Query 028077
Match_columns 214
No_of_seqs 89 out of 91
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028077.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028077hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dcfa1 e.3.1.1 (A:5-392) 6-am 54.7 11 0.00083 31.0 6.3 26 151-176 70-95 (388)
2 d2veaa2 d.110.2.4 (A:327-514) 29.6 26 0.0019 26.7 4.3 52 146-199 26-78 (188)
3 d2hdsa1 e.3.1.1 (A:4-361) AMPC 27.2 48 0.0035 25.8 5.6 56 157-213 22-94 (358)
4 d2drwa1 e.3.1.1 (A:2-363) D-Am 21.7 65 0.0047 25.2 5.4 60 153-213 15-92 (362)
5 d2aj7a1 b.158.1.1 (A:1-148) Hy 18.5 20 0.0015 26.7 1.4 16 46-61 18-33 (148)
6 d3c2wa2 d.110.2.4 (A:310-494) 18.1 46 0.0034 25.2 3.5 41 152-195 36-76 (185)
7 d1n0wa_ c.37.1.11 (A:) DNA rep 15.3 6.3 0.00046 27.1 -2.2 15 47-61 2-16 (242)
8 d1wxxa1 b.122.1.9 (A:1-64) Hyp 14.3 98 0.0071 19.6 3.9 22 161-182 34-55 (64)
9 d1onha_ e.3.1.1 (A:) AMPC beta 12.7 1.7E+02 0.012 22.5 5.8 57 156-213 23-96 (363)
10 d1vk6a2 d.113.1.4 (A:126-256) 12.4 50 0.0036 22.6 2.1 16 157-172 3-18 (131)
No 1
>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}
Probab=54.69 E-value=11 Score=31.01 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.0
Q ss_pred HHHhhhccccEEEEEECCEEEEEeee
Q 028077 151 YVLLRNTNSISVLISIRGELCVRGYW 176 (214)
Q Consensus 151 ~~LLtnT~a~svlV~~~g~~l~RG~l 176 (214)
..+|..|.+.++||.++|+++.--+.
T Consensus 70 ~~~l~~~~t~a~lV~~~G~iv~E~y~ 95 (388)
T d2dcfa1 70 EQRLEQTYTDAFLVLRGTEVVAEYYR 95 (388)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEEC
T ss_pred HHHHHhcCCcEEEEEECCEEEEEEec
Confidence 45568999999999999999863343
No 2
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=29.58 E-value=26 Score=26.71 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhccccEEEEEECCEEEEEeeecCCCCCChhHHHHHHHHhcc-ccc
Q 028077 146 LAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIE-NIG 199 (214)
Q Consensus 146 LAWaS~~LLtnT~a~svlV~~~g~~l~RG~l~~p~d~~~g~I~~~~~~~~~-~~y 199 (214)
|.--..-|+.-.+|.++.|+++|++..-|- .|++-.-..|.+|+..... +.|
T Consensus 26 l~~~~~~ll~l~~A~G~al~~~~~~~~~G~--~P~~~~i~~L~~wl~~~~~~~~~ 78 (188)
T d2veaa2 26 LTNHPDRLLGLTGSQGAAICFGEKLILVGE--TPDEKAVQYLLQWLENREVQDVF 78 (188)
T ss_dssp HHTCHHHHHHTTTCSEEEEEETTEEEEEES--CCCHHHHHHHHHHHHHTTCCSCE
T ss_pred HHhCCHHHHhhcCCCEEEEEECCEEEEeCC--CcCHHHHHHHHHHHHhcCCCCce
Confidence 444567899999999999999999988884 4545556788999887654 444
No 3
>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]}
Probab=27.16 E-value=48 Score=25.80 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=32.9
Q ss_pred ccccEEEEEECCEEEE--EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--ccCCCC
Q 028077 157 TNSISVLISIRGELCV--RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (214)
Q Consensus 157 T~a~svlV~~~g~~l~--RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (214)
.+-.+|.|+++|+++. .|+.+.. .| ++|.-..--++.- .+.+..||.+++ |+|+..
T Consensus 22 ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~l-v~~G~l~ld~~v~~ylp~~~ 94 (358)
T d2hdsa1 22 IPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDA-IARGEIKLSDPTTKYWPELT 94 (358)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHH-HHTTSCCTTSBHHHHCTTCC
T ss_pred CCeEEEEEEECCEEEEEeEEeeccccCCCCCCCCEEeccchHHHHHHHHHHHH-HhcCCcccchhhhhhccccc
Confidence 5677899999999864 5765332 11 3443222222222 233445888887 899763
No 4
>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}
Probab=21.70 E-value=65 Score=25.20 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=34.3
Q ss_pred HhhhccccEEEEEECCEEEE---EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--ccCCCC
Q 028077 153 LLRNTNSISVLISIRGELCV---RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (214)
Q Consensus 153 LLtnT~a~svlV~~~g~~l~---RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (214)
+-..-+..+|.|+.+|+++. .|+.... .+ ++|.-..--+++-.++ +..||.|++ |+|+..
T Consensus 15 ~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~-G~l~ldd~v~~ylp~~~ 92 (362)
T d2drwa1 15 VARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQD-GTVDLDEPITRWFPDLP 92 (362)
T ss_dssp HTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHT-TSCCTTSBGGGTCTTST
T ss_pred HHcCCCeEEEEEEECCEEEEEEeEEEeccccCCCCCCCCeEEeeehHHHHHHHHHHHHHHc-CCCCCCceeeeeecccc
Confidence 33455677889999999642 6765421 11 3444333333333333 334888777 888753
No 5
>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus halodurans [TaxId: 86665]}
Probab=18.50 E-value=20 Score=26.75 Aligned_cols=16 Identities=31% Similarity=0.779 Sum_probs=13.7
Q ss_pred eeeeeecCCCCCCCCC
Q 028077 46 SVLRFTFGIPGFDESY 61 (214)
Q Consensus 46 sv~Rftlgipg~dd~~ 61 (214)
.++.|.-|||||.|-+
T Consensus 18 ~ii~Fp~Gi~GFe~~~ 33 (148)
T d2aj7a1 18 RLIAFDQGIPAFEDEK 33 (148)
T ss_dssp GEEECTTCBTTBTTCC
T ss_pred cEEEcCCCCCCCCccc
Confidence 4799999999998754
No 6
>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.07 E-value=46 Score=25.17 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHhhhccccEEEEEECCEEEEEeeecCCCCCChhHHHHHHHHhc
Q 028077 152 VLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQI 195 (214)
Q Consensus 152 ~LLtnT~a~svlV~~~g~~l~RG~l~~p~d~~~g~I~~~~~~~~ 195 (214)
-|++=..|.+++|+++|++...| .|++.....+++|+..+.
T Consensus 36 ~ll~l~~AdG~ai~~~g~~~~~g---~p~~~~i~~l~~wl~~~~ 76 (185)
T d3c2wa2 36 GIAALIPCDGALVMLGGRTLSIR---GDFERQAGNVLQRLQRDP 76 (185)
T ss_dssp SHHHHTTCSEEEEEETTEEEEES---SCCHHHHHHHHHHHTTST
T ss_pred HHHhhhCCCEEEEEECCEEEEcC---CCCHHHHHHHHHHHhhCC
Confidence 47888999999999999986555 354556678888886543
No 7
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=6.3 Score=27.11 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.2
Q ss_pred eeeeecCCCCCCCCC
Q 028077 47 VLRFTFGIPGFDESY 61 (214)
Q Consensus 47 v~Rftlgipg~dd~~ 61 (214)
+.|++-|||+||+-.
T Consensus 2 ~~ri~TG~~~LD~ll 16 (242)
T d1n0wa_ 2 IIQITTGSKELDKLL 16 (242)
T ss_dssp CCEECCSCHHHHHHT
T ss_pred CCEEcCCCHHHHHhh
Confidence 579999999999743
No 8
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.29 E-value=98 Score=19.64 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=17.1
Q ss_pred EEEEEECCEEEEEeeecCCCCC
Q 028077 161 SVLISIRGELCVRGYWQTPDGA 182 (214)
Q Consensus 161 svlV~~~g~~l~RG~l~~p~d~ 182 (214)
.++|+++|+.+.+|++++.+.+
T Consensus 34 ~~~v~~~~~~lg~g~~np~S~I 55 (64)
T d1wxxa1 34 LYPVYWGRRFLALALYNPHTDL 55 (64)
T ss_dssp EEEEEETTEEEEEEEECTTSSS
T ss_pred eEEEEECCcEEEEEEECCCCCE
Confidence 4566788887889999988664
No 9
>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]}
Probab=12.70 E-value=1.7e+02 Score=22.53 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=32.2
Q ss_pred hccccEEEEEECCEEEE--EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--ccCCCC
Q 028077 156 NTNSISVLISIRGELCV--RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (214)
Q Consensus 156 nT~a~svlV~~~g~~l~--RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (214)
..+..+|.|..+|+++. -|+.... .| ++|. +..-+.-+..+.+..+|.|++ |+|+..
T Consensus 23 ~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~-~ta~~i~~L~e~G~l~lddpv~~ylp~~~ 96 (363)
T d1onha_ 23 SVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKT-FTGVLGGDAIARGEISLDDPVTRYWPQLT 96 (363)
T ss_dssp TCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHH-HHHHHHHHHHHHTSCCTTSBGGGTCTTCC
T ss_pred CCCeEEEEEEECCEEEEEeEEecccCCCCCCCCCCEEEeeehHHH-HHHHHHHHHHhcCcceeeeccchhhhhcc
Confidence 35777889999999864 5664321 11 3443 222222223333455787765 888753
No 10
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=12.44 E-value=50 Score=22.55 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=11.8
Q ss_pred ccccEEEEEECCEEEE
Q 028077 157 TNSISVLISIRGELCV 172 (214)
Q Consensus 157 T~a~svlV~~~g~~l~ 172 (214)
++|-.++|..++++++
T Consensus 3 ~paViv~i~~~~~vLL 18 (131)
T d1vk6a2 3 APCIIVAIRRDDSILL 18 (131)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred ccEEEEEEEeCCEEEE
Confidence 4566778889999853
Done!