BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028078
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 133 LPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCP 192
LPS+ F+ +TLC +C+ D+ + LRVLPC HEFH+ CVD WL + CP
Sbjct: 9 LPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCP 64
Query: 193 VCRHE 197
+CR +
Sbjct: 65 ICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 56.6 bits (135), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNE 205
C+ICL EGE++R LPC H FH CVD WLI CP+CR +I +E
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLPSE 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 127 RSTVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR 186
+ +++ALP + + G+E C IC +Y +G+ LPC H FH CV WL +
Sbjct: 19 KESIDALPEILVTEDHGAV--GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK 76
Query: 187 WGTFCPVCR 195
GT CPVCR
Sbjct: 77 SGT-CPVCR 84
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198
C +C EDY GE++R LPC H FH SC+ WL + + CPVCR +
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRKSL 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 153 CSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCR 195
C++CL + +GE R LP C H FH+ CVD WL T CP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWL-IRWGTFCPVCRHEI 198
LC++CLED++ + L + PC+H FH C+ WL +R CP+C +
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPV 62
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ +++++ PC H +SC+ SW G CP CR EI+
Sbjct: 334 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ +++++ PC H +SC+ SW G CP CR EI+
Sbjct: 336 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ +++++ PC H +SC+ SW G CP CR EI+
Sbjct: 336 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ +++++ PC H +SC+ SW G CP CR EI+
Sbjct: 334 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ + ++++ PC H +SC+ SW G CP CR EI+
Sbjct: 29 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ + ++++ PC H +SC+ SW G CP CR EI+
Sbjct: 26 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 97 SIPLLFWFARKLYPIDSPRRHRPEQTRQLPRSTVNALPSFVFSSVTSVRCHGRETLCSIC 156
S+ L + I + EQT++ + + A V S + V E C IC
Sbjct: 3 SMEELNRSKKDFEAIIQAKNKELEQTKE-EKEKMQAQKEEVLSHMNDV--LENELQCIIC 59
Query: 157 LEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202
E + E L C H F S C++ W+ R CP+CR +I+ T
Sbjct: 60 SEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 97 SIPLLFWFARKLYPIDSPRRHRPEQTRQLPRSTVNALPSFVFSSVTSVRCHGRETLCSIC 156
S+ L + I + EQT++ + + A V S + V E C IC
Sbjct: 3 SMEELNRSKKDFEAIIQAKNKELEQTKE-EKEKMQAQKEEVLSHMNDV--LENELQCIIC 59
Query: 157 LEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202
E + E L C H F S C++ W+ R CP+CR +I+ T
Sbjct: 60 SEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199
LC IC E+ +++++ PC H +SC+ +W G CP CR EI+
Sbjct: 340 LCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 106 RKLYPIDSPRRHRPEQTRQLPRSTVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGEN 165
+ I + EQT++ + + A V S + V E C IC E + E
Sbjct: 23 KDFEAIIQAKNKELEQTKE-EKEKMQAQKEEVLSHMNDVL--ENELQCIICSEYFIEA-- 77
Query: 166 LRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202
L C H F S C++ W+ R CP+CR +I+ T
Sbjct: 78 -VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 112
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201
LC IC E+ + ++++ PC H +SC+ +W G CP CR EI+ +
Sbjct: 28 LCKICAENDK---DVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGT 74
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNEG 206
E C IC++ G +LPC H F C+D W R CP+CR ++ + + G
Sbjct: 15 EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRN-CPICRLQMTGANESSG 66
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 153 CSICLEDYREGENL-RVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196
C ICLED + VLPC H H +C + L + G CP+C H
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML-KEGYRCPLCMH 51
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195
C ICLED LPC H F C+ W IR CP+C+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRW-IRQNPTCPLCK 47
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 153 CSICLEDYREGENL-RVLPCRHEFHSSCVDSWLIRWGTFCPVC 194
C ICLED + VLPC H H +C + L + G CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML-KEGYRCPLC 49
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 141 VTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI-- 198
V S R E +C ICL+ + + C H F + C+ + L CP CR ++
Sbjct: 44 VVSPRSLHSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 101
Query: 199 RRSTSNEGNEQVHVS 213
+RS + N +S
Sbjct: 102 KRSLRPDPNFDALIS 116
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 31.6 bits (70), Expect = 0.30, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 3 RGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHA 62
RG +F KI NA+ AG ++Y + K I + P +PA +++ + G LK+++
Sbjct: 297 RGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIEL--PNVDQMPAAFISRKDGLLLKDNS 354
Query: 63 R 63
+
Sbjct: 355 K 355
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 141 VTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198
V S R E +C ICL+ + + C H F + C+ + L CP CR ++
Sbjct: 45 VVSPRSLHSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 141 VTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI-- 198
V S R E +C ICL+ + + C H F + C+ + L CP CR ++
Sbjct: 25 VVSPRSLHSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 82
Query: 199 RRSTSNEGNEQVHVS 213
+RS + N +S
Sbjct: 83 KRSLRPDPNFDALIS 97
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 132 ALPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFC 191
ALP S++ E C IC+E E L PC H C S + + C
Sbjct: 4 ALPKDAIPSLS-------ECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVEKASLCC 53
Query: 192 PVCRHEI 198
P CR +
Sbjct: 54 PFCRRRV 60
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 166 LRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201
L V C H SCVD +R CP C +R+S
Sbjct: 21 LMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 153 CSICLEDYREGENLRVLPCRHEFHSSCVD--SWLIRWGTFCPVCRHEIRRSTSNEG 206
C+ICL+ +L PC+H F CV SWL G C +CR EI + G
Sbjct: 18 CAICLQTCVHPVSL---PCKHVFCYLCVKGASWL---GKRCALCRQEIPEDFLDSG 67
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 148 GRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPV 193
G + C ICL RE PC H F +C+ + G CPV
Sbjct: 4 GSKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 7 NFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGAN 44
+F K+QN Q+A Y +I ++K P+ TY + N
Sbjct: 170 HFRSKLQNKQSATYTLSIEIETQEKKPIKVKTYLQAPN 207
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 171 CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNEGNEQVHV 212
C+H C+D CP CR+++ RS + + N+ +
Sbjct: 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,546,494
Number of Sequences: 62578
Number of extensions: 261813
Number of successful extensions: 655
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 43
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)