BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028079
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 117/171 (68%)
Query: 34 AAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFI 93
++P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG I
Sbjct: 8 GSNPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 67
Query: 94 PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 153
PRT ED DP D++V+M+EPV P + + R IGL MID G+KD K++AV +DP F+ +
Sbjct: 68 PRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDW 127
Query: 154 KDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 204
KDI ++P L EI FF+ YK+ + K++ VE + AEAA I ++++Y
Sbjct: 128 KDIDDVPKAFLDEIAHFFKRYKELQGKEIIVEGWEGAEAAKREILRAIEMY 178
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 115/169 (68%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLY+ YP +YG IPR
Sbjct: 19 NPFHDLEPGPNVPEVVYALIEIPKGSRNKYELDKETGLLKLDRVLYTPFHYPVDYGIIPR 78
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T ED DP D++V+M+EP P + + R IGL MID G+KD K++AV +DP F+ +KD
Sbjct: 79 TWYEDGDPFDIMVIMREPTYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKD 138
Query: 156 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 204
I ++P L EI FF+ YK+ E K++ VE + AEAA I ++++Y
Sbjct: 139 ISDVPKAFLDEIAHFFKRYKELEGKEIIVEGWEGAEAAKREILRAIEMY 187
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 159 bits (403), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 113/169 (66%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDKA+GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 204
I ++P L EI FF+ YK+ + K +E + AE A I ++++Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMY 170
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 112/169 (66%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 204
I ++P L EI FF+ YK+ + K +E + AE A I ++++Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMY 170
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D+ V+ +EPV P + + R IG+ D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIXVIXREPVYPLTIIEARPIGIXKXEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 204
I ++P L EI FF+ YK+ + K +E + AE A I +++ Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEXY 170
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFIP T+ ED
Sbjct: 3 LSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEED 62
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV D DP F + KDI +
Sbjct: 63 GDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDIND 122
Query: 159 LPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSM 201
LP +I FFE YK+ E K V + + A A I+ ++
Sbjct: 123 LPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAI 166
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 4/167 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
LE+ A ++C V+EI K +KYELDK SG + VDRVLY + YP NYGF+P T+ D
Sbjct: 6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSD 64
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+D LVL GS ++ R +G++ M D+ D+K+IA+ D DP + KDI +
Sbjct: 65 GDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDD 124
Query: 159 LPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 204
L H L +I+ FFE YK E NK V V+ F E+AI+ ++ ++ Y
Sbjct: 125 LSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAY 171
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 4/167 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
LE+ A ++C V+EI K +KYELDK SG + VDRVLY + YP NYGF+P T+ D
Sbjct: 6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALXVDRVLYGAQNYPANYGFVPNTLGSD 64
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+D LVL GS ++ R +G++ D+ D+K+IA+ D DP + KDI +
Sbjct: 65 GDPVDALVLSDVAFQAGSVVKARLVGVLNXEDESGXDEKLIALPIDKIDPTHSYVKDIDD 124
Query: 159 LPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 204
L H L +I+ FFE YK E NK V V+ F E+AI+ ++ ++ Y
Sbjct: 125 LSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAY 171
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
++ +G P N +VE+ GG+ +KYE+DK SG + VDR LY+S+VYP NYGF+P T+
Sbjct: 9 EIAVGKNPPEDVNVIVEVSLGGQPIKYEMDKKSGALFVDRFLYTSMVYPGNYGFVPHTLS 68
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDI 156
ED DP+DVL+ P+LPG + IG + M D G KD+KIIA+ + + D
Sbjct: 69 EDGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGGKDEKIIAIPTPKLTQRYNNIHDY 128
Query: 157 KELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMD 202
+LP L +I FFE YK E K +E + A E IK +++
Sbjct: 129 TDLPEITLKQIEHFFEHYKDLEPGKWAKIEGWRDKSFAHELIKQAIE 175
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Thermus Thermophilus
Length = 174
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGFIP T+ ED
Sbjct: 6 LPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAED 65
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELP 160
DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H +DI ++P
Sbjct: 66 GDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVP 125
Query: 161 PHRLAEIRRFFEDYKKNENKK---VDVEDFLPAEAAIEAIKYSMDLY 204
EI+ FFE YK E KK V V + +AA+E ++ + Y
Sbjct: 126 EGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 11 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 70
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 71 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 130
Query: 172 EDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 206
YK E K V D++ A ++ S++ + +
Sbjct: 131 VHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 166
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 14 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 73
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 74 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 133
Query: 172 EDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 206
YK E K V D++ A ++ S++ + +
Sbjct: 134 VHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 169
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 13 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 72
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 73 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 132
Query: 172 EDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 206
YK E K V D++ A ++ S++ + +
Sbjct: 133 VHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 168
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
Query: 44 GPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDP 103
GPG+ + +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ ED DP
Sbjct: 1 GPGSMVQFDVTIEIPKGQRNKYEVDHKTGRVRLDRYLYTPMAYPTDYGFIEDTLGEDGDP 60
Query: 104 MDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHR 163
+D LVL+ EP+ PG + R +G+ M+D+ DDK++ V +D + H I ++P
Sbjct: 61 LDALVLLPEPLFPGVLVEARPVGMFRMVDEHGGDDKVLCVPVNDHRWDHIHGIIDVPTFE 120
Query: 164 LAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 206
L I+ FF YK E K V D++ + A ++ S++ + +
Sbjct: 121 LDAIKHFFVHYKDLEPGKFVKAADWVGRDEAEAEVQRSVERFKA 164
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICE 99
+ IG P N ++E+ GG+ +KYE+DK +G + VDR LY+ + YP NYGF+P T+ E
Sbjct: 27 ISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSE 86
Query: 100 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYK--DIK 157
D DP+DVLV P++PG + R IG++ M D KD+KIIAV + R+ K D
Sbjct: 87 DGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYT 146
Query: 158 ELPPHRLAEIRRFFEDYKKNE-NKKVDVEDF 187
++P L +I FFE YK E K V + D+
Sbjct: 147 DMPEITLKQIAHFFEHYKDLEPGKWVKIGDW 177
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 52 NCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLM 110
N ++EI G +KYE DK SG + VDR + +++ YP NYGFIP T+ D DP+DVLV+
Sbjct: 17 NVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVA 76
Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIR 168
PV+PGS ++CRAIG++ M D+ D+KIIAV D F H K++ +L I
Sbjct: 77 HHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIV 136
Query: 169 RFFEDYKKNENKK 181
FFE YK E K
Sbjct: 137 HFFEHYKDLEKGK 149
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 12/172 (6%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSV 84
SMS +V A G P N ++EI + VKYE DKA GL+ VDR + + +
Sbjct: 20 GSMSFSNVPA--------GKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGM 71
Query: 85 VYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVC 144
YP NYGFIP+T+ D DP+DVLV+ P+L GS +R RA+G++ M D+ D K++AV
Sbjct: 72 RYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVP 131
Query: 145 ADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAA 193
D P + K I ++P + +I+ FFE YK E K V VE + +AA
Sbjct: 132 HDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAA 183
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M ++ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + V+R + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVNRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ + D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLNGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P++VLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVNVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VD+ + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 202
A+I FFE YK E K V VE + AEAA I S +
Sbjct: 128 ELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFE 170
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
pdb|3LD3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
Length = 199
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
D+ G AP N V+E+ + VKYE D+ +G + VDR L +++ YP NYGFIP TI
Sbjct: 26 DIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIA 85
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDI 156
D DP+DVLVL + PV+PG+ + R +G++ M D+ +D K++AV A D + + +
Sbjct: 86 GDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNY 145
Query: 157 KELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSM 201
+LP L I FF YKK E K V V + A +A E I+ ++
Sbjct: 146 SDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAASAKELIRSAI 191
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 44 GPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P N ++EI + VKYE DK L VDR L +S+ YP NYGFIP T D D
Sbjct: 30 GDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHTCAGDGD 89
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELP 160
P+DVLV + PV+ G+ +R R +G++ M D+ +D KI+AV D + + KD + P
Sbjct: 90 PVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIKDYSDFP 149
Query: 161 PHRLAEIRRFFEDYKK-NENKKVDVEDF 187
L I FF YKK E+K V VE +
Sbjct: 150 VSFLNSISHFFTFYKKLEEDKFVSVEGW 177
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 52 NCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLM 110
N ++EI GG+VKYE DK G + VDR +S YP NYGF+P T+ +D DP+DVLVL
Sbjct: 18 NVIIEIPANGGEVKYEYDKELGFLTVDRFXPTSXRYPCNYGFVPSTLAQDGDPLDVLVLT 77
Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV-----CADDPEFRHYKDIKELPPHRLA 165
PV PG R RA+G+ D+ +D K++AV C + KDI L L
Sbjct: 78 PVPVQPGVLXRVRALGIXKXEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSL---LLD 134
Query: 166 EIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSM 201
I FFE YK E NK V+ + EAA + + S+
Sbjct: 135 AISHFFERYKDLEPNKWAKVKGWEDKEAAKKEFEASI 171
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 38 WHDLEIGPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRT 96
++ + G P +EI +KYE+DK + VDR + YP NYG+I T
Sbjct: 4 YNTIPAGKDLPNDIYVAIEIPANASPIKYEIDKDXDALLVDRFXATPXFYPANYGYINNT 63
Query: 97 ICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE--FRHYK 154
+ +D D +DVLV+ PV PGS +R R +G++ D+ D+K++AV + +
Sbjct: 64 LADDGDALDVLVITPYPVAPGSVIRARPVGVLKXSDEAGGDEKLLAVPHEKLTQLYNDIH 123
Query: 155 DIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMDLY 204
DI ++P +I FFE YK E K V VE + A+AA AI S Y
Sbjct: 124 DIDDVPQLLKDQIVHFFEHYKDLEKGKWVKVEGWENADAARAAIVKSAAAY 174
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D A G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G +K R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLKFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 163 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 222
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 223 THDSWKQLI 231
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 163 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 222
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 223 THDSWKQLI 231
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITREETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HN+G P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNFGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VV+I + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVDIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP++VL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D++P+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP++VL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIEVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE + K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETEWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ ++DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGENDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKY 199
D P+ +D+++ P L +F YK K EN+ + + A++ IK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
Query: 200 SMDLYASYI 208
+ D + I
Sbjct: 222 THDSWKQLI 230
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 50 VCNCVVEIGKGGKVKYELDK----------ASGLIKVDRVLYSSVVYPHNYGFIPRTICE 99
+ N VVEI + K E+ K G ++ R + Y HNYG P+T +
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQNTKGKLRFVRNCFPHHGYIHNYGAFPQTWED 101
Query: 100 ------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD 147
D++P+DVL + + G +A+G+M ++D+GE D K+IA+ +D
Sbjct: 102 PNVSHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMALLDEGETDWKVIAIDIND 161
Query: 148 ---PEFRHYKDIKELPPHRLAEIRRFFEDYK 175
P+ +D+++ P L +F YK
Sbjct: 162 PLAPKLNDIEDVEKYFPGLLRATDEWFRIYK 192
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 167 IRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 208
+ RFFE +N++ V +E+FL A E I SM L+ + I
Sbjct: 59 VERFFEKMDRNQDGVVTIEEFLEACQKDENIMSSMQLFENVI 100
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 151 RH-YKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 208
RH Y ++E P L + RFF+ +N++ V +++FL E I SM L+ + I
Sbjct: 200 RHTYPILREDAP--LEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENVI 256
>pdb|1CKV|A Chain A, Structure Of The Soluble Methane Monooxygenase Regulatory
Protein B
pdb|4GAM|D Chain D, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|I Chain I, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|N Chain N, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|S Chain S, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 141
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 145 ADDPEFRHYKDIKELPPHRLAEIRRFFE-----DYKKNENKKVDVED-----FLPAEAAI 194
AD+ + H D L + EI F E DYKKN N V+VED ++ A I
Sbjct: 26 ADENQVVHESDTVVLVLKKSDEINTFIEEILLTDYKKNVNPTVNVEDRAGYWWIKANGKI 85
Query: 195 E 195
E
Sbjct: 86 E 86
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 104 MDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHR 163
DVL+ + VL + + + MI++ K + V ++ Y+ + P+R
Sbjct: 180 FDVLLPQHDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPKGDDWARYRGASLITPNR 239
Query: 164 LAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAI 197
AE+R +K ++ + V + L AE I+A+
Sbjct: 240 -AELREVVGQWKSEDDLRARVAN-LRAELDIDAL 271
>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant)
Crystal Structure After 2 Hours In A Flow Cell
Determined By Time-Resolved Laue Diffraction
Length = 313
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGQGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane
Synthase Determined By Mad
Length = 313
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 34 AAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----VV 85
A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 29 ASHPGLVVELVPXVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSXKDVPVE 88
Query: 86 YPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 89 FPQGLGLV--TICEREDPRDAFV 109
>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible
Multidomain Polymerase With A Single Catalytic Site
Length = 313
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase
pdb|1GTK|A Chain A, Time-Resolved And Static-Ensemble Structural Chemistry Of
Hydroxymethylbilane Synthase
Length = 313
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,044,428
Number of Sequences: 62578
Number of extensions: 307151
Number of successful extensions: 833
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 55
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)