Query 028079
Match_columns 214
No_of_seqs 141 out of 1093
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 4.7E-75 1E-79 493.0 22.4 187 27-213 1-187 (188)
2 PRK00642 inorganic pyrophospha 100.0 3.5E-71 7.6E-76 474.9 21.5 178 31-208 5-204 (205)
3 PRK01250 inorganic pyrophospha 100.0 1.9E-69 4E-74 454.9 20.2 171 36-206 1-175 (176)
4 PLN02707 Soluble inorganic pyr 100.0 2.1E-68 4.5E-73 472.3 20.8 199 12-212 35-259 (267)
5 PRK02230 inorganic pyrophospha 100.0 8.9E-65 1.9E-69 428.8 19.7 159 49-207 3-162 (184)
6 cd00412 pyrophosphatase Inorga 100.0 7.9E-65 1.7E-69 419.4 17.5 154 49-202 1-155 (155)
7 PF00719 Pyrophosphatase: Inor 100.0 2.3E-64 5.1E-69 416.8 15.8 155 52-206 1-156 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 1.3E-62 2.8E-67 411.7 17.6 170 36-206 1-171 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 2.9E-58 6.2E-63 403.0 15.7 198 13-212 7-235 (279)
10 KOG1626 Inorganic pyrophosphat 92.0 0.14 3.1E-06 46.2 3.1 50 17-66 20-70 (279)
11 COG1094 Predicted RNA-binding 58.3 26 0.00057 30.5 5.5 111 60-202 36-163 (194)
12 PF07177 Neuralized: Neuralize 44.0 24 0.00053 25.3 2.7 22 105-126 30-51 (69)
13 cd05694 S1_Rrp5_repeat_hs2_sc2 43.8 17 0.00037 26.1 1.9 28 90-127 30-57 (74)
14 smart00588 NEUZ domain in neur 37.2 43 0.00093 26.6 3.4 47 100-150 26-72 (123)
15 COG4766 EutQ Ethanolamine util 37.1 28 0.00061 29.6 2.4 30 54-91 145-174 (176)
16 PLN02150 terpene synthase/cycl 34.5 61 0.0013 24.7 3.7 26 188-213 19-45 (96)
17 PF06249 EutQ: Ethanolamine ut 32.8 34 0.00074 28.6 2.2 28 55-90 123-150 (152)
18 KOG1110 Putative steroid membr 32.5 25 0.00054 30.4 1.3 38 138-176 108-145 (183)
19 cd01460 vWA_midasin VWA_Midasi 32.0 21 0.00046 32.2 0.9 27 148-174 237-263 (266)
20 PF13333 rve_2: Integrase core 29.8 44 0.00094 22.2 2.0 34 169-205 2-35 (52)
21 TIGR01659 sex-lethal sex-letha 27.8 2.6E+02 0.0055 26.0 7.3 87 116-202 131-257 (346)
22 PF09608 Alph_Pro_TM: Putative 24.9 96 0.0021 27.5 3.8 43 89-132 25-69 (236)
23 PF09476 Pilus_CpaD: Pilus bio 24.5 2.1E+02 0.0045 24.6 5.7 47 157-203 52-104 (203)
24 COG4447 Uncharacterized protei 24.2 1.7E+02 0.0038 27.4 5.3 102 35-142 31-164 (339)
25 cd02861 E_set_proteins_like E 23.0 95 0.0021 22.2 2.9 33 36-68 23-56 (82)
26 cd05695 S1_Rrp5_repeat_hs3 S1_ 21.9 76 0.0017 21.9 2.1 33 90-128 25-57 (66)
27 COG4050 Uncharacterized protei 21.6 1.6E+02 0.0035 24.2 4.1 38 49-93 59-101 (152)
28 smart00362 RRM_2 RNA recogniti 21.3 1.8E+02 0.0038 18.2 3.7 38 163-200 12-59 (72)
29 PF07469 DUF1518: Domain of un 21.1 51 0.0011 23.5 1.0 15 83-97 18-32 (58)
30 PTZ00162 DNA-directed RNA poly 20.8 1.9E+02 0.0042 24.3 4.7 61 87-153 103-171 (176)
31 PF14259 RRM_6: RNA recognitio 20.5 87 0.0019 20.9 2.1 39 163-201 11-60 (70)
32 PF00076 RRM_1: RNA recognitio 20.5 1.2E+02 0.0026 19.6 2.8 39 163-201 11-60 (70)
33 PF07765 KIP1: KIP1-like prote 20.3 64 0.0014 24.0 1.4 19 160-178 52-70 (74)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=4.7e-75 Score=493.00 Aligned_cols=187 Identities=90% Similarity=1.438 Sum_probs=182.2
Q ss_pred cccCCCcccCCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceE
Q 028079 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDV 106 (214)
Q Consensus 27 ~~~~~~~~~spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDv 106 (214)
||.++..++|||||||++++.|+.||||||||+||++|||+|+++|.|++||++++++.||||||||||||++|||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCCCceeEecc
Q 028079 107 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVED 186 (214)
Q Consensus 107 lvl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~legK~v~~~~ 186 (214)
|||++.|++||++++|||||+|+|+|+||+|||||||+.+||+|++|++++|||++++++|+|||++||.+|||++.+++
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g 160 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 160 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 028079 187 FLPAEAAIEAIKYSMDLYASYIVESLR 213 (214)
Q Consensus 187 ~~~~~~A~~vI~~~~~~~~~~~~~~~~ 213 (214)
|.|+++|+++|++|+++|++++...++
T Consensus 161 ~~~~~~A~~~I~~~~~~y~~~~~~~~~ 187 (188)
T PLN02373 161 FLPAEAAIEAIQYSMDLYAEYIVESLR 187 (188)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998887654
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.5e-71 Score=474.89 Aligned_cols=178 Identities=43% Similarity=0.699 Sum_probs=171.2
Q ss_pred CCcccCCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccC------------
Q 028079 31 RSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC------------ 98 (214)
Q Consensus 31 ~~~~~spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~------------ 98 (214)
.+.++|||||||++++.|+.|||||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 56678999999999998999999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCcceEEEecCccCCCcce-EEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHH
Q 028079 99 ------EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171 (214)
Q Consensus 99 ------~DgDPLDvlvl~~~p~~~G~v-i~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF 171 (214)
|||||||||||++.|++||++ ++|||||+|+|+|+||+|||||||+++||+|++|++|+||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCC---ceeEeccccCHHHHHHHHHHHHHHHHHHH
Q 028079 172 EDYKKNEN---KKVDVEDFLPAEAAIEAIKYSMDLYASYI 208 (214)
Q Consensus 172 ~~YK~leg---K~v~~~~~~~~~~A~~vI~~~~~~~~~~~ 208 (214)
++||.++| |++.++||.++++|+++|++||++|++++
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHHHHHHHHHHhh
Confidence 99999995 45899999999999999999999999864
No 3
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.9e-69 Score=454.89 Aligned_cols=171 Identities=43% Similarity=0.727 Sum_probs=167.2
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCCCCC-ceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 028079 36 HPWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 114 (214)
Q Consensus 36 spwHdipl~~~~p~~v~~VIEIP~gs~-~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 114 (214)
++||++|.+++.|+.|||||||||||+ +|||+|+++|.|++||++++++.||||||||||||++||||||||||++.|+
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 379999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 028079 115 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 191 (214)
Q Consensus 115 ~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~ 191 (214)
+||++++|||||+|+|+|+||+|||||||+.+ ||+|++|++++|||++++++|+|||++||.++ ||++++.+|.|++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 69999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028079 192 AAIEAIKYSMDLYAS 206 (214)
Q Consensus 192 ~A~~vI~~~~~~~~~ 206 (214)
+|+++|++|+++|++
T Consensus 161 ~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 161 EAKAEIVEAIERAKK 175 (176)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 4
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=2.1e-68 Score=472.34 Aligned_cols=199 Identities=30% Similarity=0.497 Sum_probs=183.3
Q ss_pred CCCCCCCCcchhhhhcccCCCcccCCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecC--CCCeEEeeeccccccccc-
Q 028079 12 NSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKA--SGLIKVDRVLYSSVVYPH- 88 (214)
Q Consensus 12 ~~~~~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~--~g~i~~DR~l~~~~~yP~- 88 (214)
-.+|+++|.++|++. ....+..+|||||||++ ..+++|||||||||||++|||+|++ .++|+|||.+...+.||+
T Consensus 35 ~~~G~~~t~~~r~~~-~~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP~~ 112 (267)
T PLN02707 35 EEEGEAETLDYRVFF-SDGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYPYN 112 (267)
T ss_pred EeecCCCCcceEEEE-ECCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECCCc
Confidence 468999999999973 23467789999999999 5689999999999999999999976 568999999988888887
Q ss_pred ---ccCcccccc-------------CCCCCcceEEEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccC
Q 028079 89 ---NYGFIPRTI-------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRH 152 (214)
Q Consensus 89 ---NYGfIP~T~-------------~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~ 152 (214)
||||||||| +|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||+++||+|++
T Consensus 113 ~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~~ 192 (267)
T PLN02707 113 INWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASL 192 (267)
T ss_pred CccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcccc
Confidence 999999997 4899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhH---HHHHHHHHHHhccCCCceeEe----ccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 028079 153 YKDIKELPPHR---LAEIRRFFEDYKKNENKKVDV----EDFLPAEAAIEAIKYSMDLYASYIVESL 212 (214)
Q Consensus 153 i~~l~Dl~~~~---l~~I~~fF~~YK~legK~v~~----~~~~~~~~A~~vI~~~~~~~~~~~~~~~ 212 (214)
|+||+||+++. +++|+|||++||.++||++.+ ++|.|+++|+++|++||++|++++++..
T Consensus 193 i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~~ 259 (267)
T PLN02707 193 VNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRSI 259 (267)
T ss_pred cCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999998665 899999999999999999876 5899999999999999999999987543
No 5
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=8.9e-65 Score=428.75 Aligned_cols=159 Identities=42% Similarity=0.699 Sum_probs=155.4
Q ss_pred ceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeE
Q 028079 49 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (214)
Q Consensus 49 ~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l 128 (214)
+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||++++|||||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCCCcee-EeccccCHHHHHHHHHHHHHHHHHH
Q 028079 129 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKV-DVEDFLPAEAAIEAIKYSMDLYASY 207 (214)
Q Consensus 129 ~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~legK~v-~~~~~~~~~~A~~vI~~~~~~~~~~ 207 (214)
+|+|+||.|||||||+.+||.|++|++++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+++|+++
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998876 6999999999999999999999875
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=7.9e-65 Score=419.43 Aligned_cols=154 Identities=53% Similarity=0.920 Sum_probs=150.7
Q ss_pred ceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeE
Q 028079 49 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (214)
Q Consensus 49 ~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l 128 (214)
+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|++||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCCC-ceeEeccccCHHHHHHHHHHHHH
Q 028079 129 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNEN-KKVDVEDFLPAEAAIEAIKYSMD 202 (214)
Q Consensus 129 ~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~leg-K~v~~~~~~~~~~A~~vI~~~~~ 202 (214)
+|+|+||+|||||||+.+||+|++|++++|||++++++|+|||++||.++| |++++.+|.|+++|+++|++||+
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~~ 155 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999996 78999999999999999999984
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=2.3e-64 Score=416.81 Aligned_cols=155 Identities=54% Similarity=0.904 Sum_probs=147.3
Q ss_pred EEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeEeee
Q 028079 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMI 131 (214)
Q Consensus 52 ~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~mi 131 (214)
||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|++||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccC-CCceeEeccccCHHHHHHHHHHHHHHHHH
Q 028079 132 DQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKN-ENKKVDVEDFLPAEAAIEAIKYSMDLYAS 206 (214)
Q Consensus 132 D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~l-egK~v~~~~~~~~~~A~~vI~~~~~~~~~ 206 (214)
|+||+|||||||+.+||+|++|++++|++++.+++|+|||++||.+ +||++.+++|.++++|+++|++||++|++
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERYKK 156 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999999999986
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.3e-62 Score=411.68 Aligned_cols=170 Identities=48% Similarity=0.809 Sum_probs=166.6
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 028079 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 115 (214)
Q Consensus 36 spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 115 (214)
|+||++|++++. +.++|+||||+||++|||+|++++.+.+||++++++.||+||||||+||++|||||||||++++|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 589999999988 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHH
Q 028079 116 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 194 (214)
Q Consensus 116 ~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A~ 194 (214)
|||+++||+||+|+|+|+||.|||||||+..||+|++|++++|+|.+++++|+|||++||.+| ||++++.||.|+++|+
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028079 195 EAIKYSMDLYAS 206 (214)
Q Consensus 195 ~vI~~~~~~~~~ 206 (214)
++|++|+++|++
T Consensus 160 ~~i~~~~~~~k~ 171 (171)
T COG0221 160 KEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHHHhhC
Confidence 999999999974
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=2.9e-58 Score=402.95 Aligned_cols=198 Identities=38% Similarity=0.593 Sum_probs=177.6
Q ss_pred CCCCCCCcchhhhhcccC-CCcccCCCCCCCCCCCCCceeEEEEEeCCCCCceEEEec-----------CCCCeEEeeec
Q 028079 13 SGGPPVALNERILSSMSH-RSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDK-----------ASGLIKVDRVL 80 (214)
Q Consensus 13 ~~~~~~~~~~r~~~~~~~-~~~~~spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~-----------~~g~i~~DR~l 80 (214)
..|+..++++|++ +.+ .+..+|||||+|+..+....||||+||||++++|+|+.+ ++|.++++|.+
T Consensus 7 e~g~~~s~~~rvy--~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~ 84 (279)
T KOG1626|consen 7 ETGKKYSLDYRVY--FPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNL 84 (279)
T ss_pred eccccCCccceee--ecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEec
Confidence 4678889999987 555 455899999999999878899999999999999999985 44678888999
Q ss_pred ccccccccccCccccccC------------CCCCcceEEEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCC
Q 028079 81 YSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDP 148 (214)
Q Consensus 81 ~~~~~yP~NYGfIP~T~~------------~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp 148 (214)
|++..||+|||||||||+ |||||||||+||+.+..+|++++||+||+|+||||||+|||||||.++||
T Consensus 85 fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnDP 164 (279)
T KOG1626|consen 85 FPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVNDP 164 (279)
T ss_pred ccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCCc
Confidence 999999999999999997 57799999999999999999999999999999999999999999999999
Q ss_pred ---CccCCCCCCCCChhHHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 028079 149 ---EFRHYKDIKELPPHRLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYSMDLYASYIVESL 212 (214)
Q Consensus 149 ---~~~~i~~l~Dl~~~~l~~I~~fF~~YK~leg----K~v~~~~~~~~~~A~~vI~~~~~~~~~~~~~~~ 212 (214)
.|.+|+|++.++|++|+++++|||.||.++| +++..+.|++++.|.++|++||+.|+++|.++|
T Consensus 165 ~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 165 LASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred chhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 4555555566789999999999999996655 457778999999999999999999999999776
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=91.98 E-value=0.14 Score=46.23 Aligned_cols=50 Identities=36% Similarity=0.481 Sum_probs=44.5
Q ss_pred CCCcchhhhhcccCCCcccCCCCCCCCCCCCCceeEEEEEeC-CCCCceEE
Q 028079 17 PVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIG-KGGKVKYE 66 (214)
Q Consensus 17 ~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p~~v~~VIEIP-~gs~~KyE 66 (214)
..+++.|++|+|.+..-.+++||++......|..+|+++||. +++.++|+
T Consensus 20 ~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pik 70 (279)
T KOG1626|consen 20 FPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIK 70 (279)
T ss_pred ecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcce
Confidence 456788999999999999999999999999999999999999 78777654
No 11
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=58.26 E-value=26 Score=30.50 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=82.2
Q ss_pred CCCceEEEecCCCCeEEeeeccccccc----------ccccCccccc---cCCCCCcceEEEecCccCCCcc---eEEEE
Q 028079 60 GGKVKYELDKASGLIKVDRVLYSSVVY----------PHNYGFIPRT---ICEDSDPMDVLVLMQEPVLPGS---FLRCR 123 (214)
Q Consensus 60 gs~~KyE~d~~~g~i~~DR~l~~~~~y----------P~NYGfIP~T---~~~DgDPLDvlvl~~~p~~~G~---vi~vr 123 (214)
-+..|.++|.++|.+.+...-.+..++ -..=||=|.- +-.|+=-|||+.|+.....++. .+..|
T Consensus 36 ~~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~~LL~d~~~levIdi~~~~~~~~~~l~R~kgR 115 (194)
T COG1094 36 KTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGR 115 (194)
T ss_pred hcCeEEEEECCCCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEEEEEHHHhccCchhhhhHhhce
Confidence 455788999999987776542222221 1366776653 4578899999999986665565 45688
Q ss_pred EeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCCCceeEe-ccccCHHHHHHHHHHHHH
Q 028079 124 AIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDV-EDFLPAEAAIEAIKYSMD 202 (214)
Q Consensus 124 viG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~legK~v~~-~~~~~~~~A~~vI~~~~~ 202 (214)
+|| .++ .++..|+..=+.|-..-|++|.+ +++.+.+.|.+.|+.++.
T Consensus 116 IIG------~~G--------------------------kTr~~IE~lt~~~I~V~g~tVaiiG~~~~v~iAr~AVemli~ 163 (194)
T COG1094 116 IIG------REG--------------------------KTRRAIEELTGVYISVYGKTVAIIGGFEQVEIAREAVEMLIN 163 (194)
T ss_pred eeC------CCc--------------------------hHHHHHHHHhCCeEEEeCcEEEEecChhhhHHHHHHHHHHHc
Confidence 988 121 47889999999999999999876 689999999999998876
No 12
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=43.98 E-value=24 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.7
Q ss_pred eEEEecCccCCCcceEEEEEee
Q 028079 105 DVLVLMQEPVLPGSFLRCRAIG 126 (214)
Q Consensus 105 Dvlvl~~~p~~~G~vi~vrviG 126 (214)
..||++++|+.+|+.+.+|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 3689999999999999999853
No 13
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.80 E-value=17 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=21.3
Q ss_pred cCccccccCCCCCcceEEEecCccCCCcceEEEEEeee
Q 028079 90 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 127 (214)
Q Consensus 90 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~ 127 (214)
=||||.+--.+. ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 488887755443 5688999999999864
No 14
>smart00588 NEUZ domain in neuralized proteins.
Probab=37.23 E-value=43 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCCcceEEEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCc
Q 028079 100 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEF 150 (214)
Q Consensus 100 DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~ 150 (214)
+.+.-+.+|+++.|+.+|+.+.+|+.-.-..- .-.==+++-..||..
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~~ 72 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPAT 72 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCccc
Confidence 44467889999999999999999987432111 001224667778853
No 15
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=37.10 E-value=28 Score=29.61 Aligned_cols=30 Identities=37% Similarity=0.757 Sum_probs=20.5
Q ss_pred EEEeCCCCCceEEEecCCCCeEEeeecccccccccccC
Q 028079 54 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG 91 (214)
Q Consensus 54 VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYG 91 (214)
||=|||||..++-. +|. -|++| ..||+|+-
T Consensus 145 vifiPKgssIefst---~ge---a~fly--vtyPanWq 174 (176)
T COG4766 145 VIFIPKGSSIEFST---TGE---AKFLY--VTYPANWQ 174 (176)
T ss_pred EEEecCCCeEEEec---cce---EEEEE--EEcccccc
Confidence 34599999888753 332 25655 68999974
No 16
>PLN02150 terpene synthase/cyclase family protein
Probab=34.50 E-value=61 Score=24.69 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHH-HHHHHHHHhhhc
Q 028079 188 LPAEAAIEAIKYSM-DLYASYIVESLR 213 (214)
Q Consensus 188 ~~~~~A~~vI~~~~-~~~~~~~~~~~~ 213 (214)
.+.++|.+.|++-+ +.|++..+|+|+
T Consensus 19 ~seeeA~~~i~~li~~~WK~iN~e~l~ 45 (96)
T PLN02150 19 VTKEEAVSELKKMIRDNYKIVMEEFLT 45 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36789999998888 689999999886
No 17
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=32.76 E-value=34 Score=28.57 Aligned_cols=28 Identities=32% Similarity=0.678 Sum_probs=15.1
Q ss_pred EEeCCCCCceEEEecCCCCeEEeeeccccccccccc
Q 028079 55 VEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNY 90 (214)
Q Consensus 55 IEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NY 90 (214)
+=||+||+..|.-... -|.+| ..||+||
T Consensus 123 i~iPkGs~I~fst~~~------a~~~Y--v~yPa~W 150 (152)
T PF06249_consen 123 IFIPKGSTITFSTPDY------ARFFY--VTYPANW 150 (152)
T ss_dssp EEE-TT-EEEEEEEEE------EEEEE--EEESTT-
T ss_pred EEECCCCEEEEecCCC------EEEEE--EECCCcc
Confidence 3488888888853211 13444 6899987
No 18
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=32.46 E-value=25 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhcc
Q 028079 138 DKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK 176 (214)
Q Consensus 138 ~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~ 176 (214)
.+.||...-|. -+.+.|++||.+..++.+.+|...||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 34445444444 456778999999999999999999985
No 19
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=32.04 E-value=21 Score=32.16 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCccCCCCCCCCChhHHHHHHHHHHHh
Q 028079 148 PEFRHYKDIKELPPHRLAEIRRFFEDY 174 (214)
Q Consensus 148 p~~~~i~~l~Dl~~~~l~~I~~fF~~Y 174 (214)
|.|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456667899999999999999999854
No 20
>PF13333 rve_2: Integrase core domain
Probab=29.79 E-value=44 Score=22.25 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=25.2
Q ss_pred HHHHHhccCCCceeEeccccCHHHHHHHHHHHHHHHH
Q 028079 169 RFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 205 (214)
Q Consensus 169 ~fF~~YK~legK~v~~~~~~~~~~A~~vI~~~~~~~~ 205 (214)
.||.+.|.-- +.-..|.+.+++.+.|.+-++.|.
T Consensus 2 sff~~lK~E~---~~~~~~~t~eel~~~I~~YI~~yN 35 (52)
T PF13333_consen 2 SFFGTLKTEM---LYRQKFKTREELKQAIDEYIDYYN 35 (52)
T ss_pred cchHhhcchh---cCCcccchHHHHHHHHHHHHHHhc
Confidence 5788777432 222368999999999999998873
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=27.76 E-value=2.6e+02 Score=26.03 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=52.1
Q ss_pred CcceEEEEEe-----------eeEeeeeCC------------CCccEEEEEeCCCCCccCCCC----CCCCChh-HHHHH
Q 028079 116 PGSFLRCRAI-----------GLMPMIDQG------------EKDDKIIAVCADDPEFRHYKD----IKELPPH-RLAEI 167 (214)
Q Consensus 116 ~G~vi~vrvi-----------G~l~miD~g------------e~D~KiiaV~~~dp~~~~i~~----l~Dl~~~-~l~~I 167 (214)
-|.|+.||++ |.+.+.|.. +...|-|-|....|....+++ +..||.. .-++|
T Consensus 131 ~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L 210 (346)
T TIGR01659 131 IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQL 210 (346)
T ss_pred cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHH
Confidence 3788888885 566665543 234555666544332222221 2345543 33578
Q ss_pred HHHHHHhccCC----------Cc--eeEeccccCHHHHHHHHHHHHH
Q 028079 168 RRFFEDYKKNE----------NK--KVDVEDFLPAEAAIEAIKYSMD 202 (214)
Q Consensus 168 ~~fF~~YK~le----------gK--~v~~~~~~~~~~A~~vI~~~~~ 202 (214)
+++|..|-... |+ -+.+..|.+.++|.+.|+....
T Consensus 211 ~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 211 DTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred HHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99999986432 22 3566789999999988886544
No 22
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=24.94 E-value=96 Score=27.52 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=29.8
Q ss_pred ccCcccccc-CCCCCcceEEEecCccCCCcceE-EEEEeeeEeeee
Q 028079 89 NYGFIPRTI-CEDSDPMDVLVLMQEPVLPGSFL-RCRAIGLMPMID 132 (214)
Q Consensus 89 NYGfIP~T~-~~DgDPLDvlvl~~~p~~~G~vi-~vrviG~l~miD 132 (214)
=||.||+.- ..++.|.||+|.-.-|..+=.+- +-|+.| |||.-
T Consensus 25 ifGai~~~~~~~~~~~~dVvV~v~GP~~~v~vrrK~r~~G-iWiN~ 69 (236)
T PF09608_consen 25 IFGAIPRPDPRPSGQPYDVVVVVEGPPQPVTVRRKERVFG-IWINT 69 (236)
T ss_pred EEEeccCcccCCcCCCCCEEEEEECCCCceEEEEcceeee-EEEec
Confidence 578888743 23445999988887777665544 488888 68863
No 23
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=24.50 E-value=2.1e+02 Score=24.59 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCCChhHHHHHHHHHHHhccCCCceeEeccccC------HHHHHHHHHHHHHH
Q 028079 157 KELPPHRLAEIRRFFEDYKKNENKKVDVEDFLP------AEAAIEAIKYSMDL 203 (214)
Q Consensus 157 ~Dl~~~~l~~I~~fF~~YK~legK~v~~~~~~~------~~~A~~vI~~~~~~ 203 (214)
.-|.+...+.|+.||..|...-+..+.+.-..+ +..+.+.|++...+
T Consensus 52 ~~Lt~~q~~~l~~f~~~~~~~~~~~v~i~~psg~~n~~aa~~~~~~i~~~l~~ 104 (203)
T PF09476_consen 52 GGLTPSQRDRLRGFASRYGRRGGGRVTIDVPSGSANARAASAAAAQIRALLAA 104 (203)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHHHHHHHHHHHHH
Confidence 347789999999999999988777788876665 44455555554443
No 24
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=24.19 E-value=1.7e+02 Score=27.37 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=67.0
Q ss_pred cCCCCCCCCCCCCCceeEEEEEeCC-----CCCce-EEEecCCC------CeEEeeecccccccccccCccccc------
Q 028079 35 AHPWHDLEIGPGAPAVCNCVVEIGK-----GGKVK-YELDKASG------LIKVDRVLYSSVVYPHNYGFIPRT------ 96 (214)
Q Consensus 35 ~spwHdipl~~~~p~~v~~VIEIP~-----gs~~K-yE~d~~~g------~i~~DR~l~~~~~yP~NYGfIP~T------ 96 (214)
.+||-++.+...+|..--.+-|-|+ |++.- +|-| +.| ++.++|-.+++..|-.+=|.||.-
T Consensus 31 p~p~~~velp~~s~~l~ia~~~~g~~gwlVg~rgtiletd-d~g~tw~qal~~~gr~~f~sv~f~~~egw~vGe~sqll~ 109 (339)
T COG4447 31 PNPWTDVELPTLSPTLDIAFTESGSHGWLVGGRGTILETD-DGGITWAQALDFLGRHAFHSVSFLGMEGWIVGEPSQLLH 109 (339)
T ss_pred CCcceeeeccccCcccceeEeecCcceEEEcCcceEEEec-CCcccchhhhchhhhhheeeeeeecccccccCCcceEEE
Confidence 3578888776655655566667664 33332 3333 222 234456677787777777888743
Q ss_pred -------cC-------CCCCcceEEEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEE
Q 028079 97 -------IC-------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIA 142 (214)
Q Consensus 97 -------~~-------~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~Kiia 142 (214)
|+ --|-|+++..+... .|..+.. .|+|--.++|+..||=+.
T Consensus 110 T~DgGqsWARi~~~e~~eg~~~sI~f~d~q---~g~m~gd--~Gail~T~DgGk~Wk~l~ 164 (339)
T COG4447 110 TTDGGQSWARIPLSEKLEGFPDSITFLDDQ---RGEMLGD--QGAILKTTDGGKNWKALV 164 (339)
T ss_pred ecCCCcchhhchhhcCCCCCcceeEEecch---hhhhhcc--cceEEEecCCcccHhHhc
Confidence 32 36889999998874 4555544 788888899988888754
No 25
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.96 E-value=95 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCCCC-CceEEEe
Q 028079 36 HPWHDLEIGPGAPAVCNCVVEIGKGG-KVKYELD 68 (214)
Q Consensus 36 spwHdipl~~~~p~~v~~VIEIP~gs-~~KyE~d 68 (214)
+.|..+++.+...+.+.+.+++|.|+ .=||-+|
T Consensus 23 n~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 23 NNWNAIPMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred CCCCcccCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 46766677655557899999999988 5555554
No 26
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.92 E-value=76 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=21.8
Q ss_pred cCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeE
Q 028079 90 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (214)
Q Consensus 90 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l 128 (214)
=||+|.+.-.+. ... ..-+..|+.++||++.+-
T Consensus 25 ~g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~id 57 (66)
T cd05695 25 TGTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYVD 57 (66)
T ss_pred eEEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEEe
Confidence 377777754321 111 445889999999999754
No 27
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.56 E-value=1.6e+02 Score=24.23 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=25.4
Q ss_pred ceeEEEEEeCCCCCceEEEec-----CCCCeEEeeecccccccccccCcc
Q 028079 49 AVCNCVVEIGKGGKVKYELDK-----ASGLIKVDRVLYSSVVYPHNYGFI 93 (214)
Q Consensus 49 ~~v~~VIEIP~gs~~KyE~d~-----~~g~i~~DR~l~~~~~yP~NYGfI 93 (214)
+.=.+-||+|.|-+-+|.+-. ....|.++ ..||+||+|
T Consensus 59 GLkYAAvEVPsGVRGRmaliGPLIEeadAAIi~~-------~~p~~FGCi 101 (152)
T COG4050 59 GLKYAAVEVPSGVRGRMALIGPLIEEADAAIIVE-------EAPFGFGCI 101 (152)
T ss_pred cceeeEEecCCCccceeeeeehhhhhcceeeEec-------cCCccccee
Confidence 556788999999999997631 11122222 347899988
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=21.28 E-value=1.8e+02 Score=18.17 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhccCC------C----ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------N----KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------g----K~v~~~~~~~~~~A~~vI~~~ 200 (214)
..++|++||+.|-... . +...+..|.+.+.|.+.++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh
Confidence 4568999999885321 1 234556788888888887643
No 29
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=21.13 E-value=51 Score=23.49 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=11.9
Q ss_pred ccccccccCcccccc
Q 028079 83 SVVYPHNYGFIPRTI 97 (214)
Q Consensus 83 ~~~yP~NYGfIP~T~ 97 (214)
-..||-|||..+|+-
T Consensus 18 qFpyppnyGm~qq~d 32 (58)
T PF07469_consen 18 QFPYPPNYGMSQQPD 32 (58)
T ss_pred ccccCCCCCccCCCC
Confidence 457888999998763
No 30
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=20.83 E-value=1.9e+02 Score=24.27 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=34.5
Q ss_pred ccccCccccccCCCC---Ccce--EEEec---CccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCC
Q 028079 87 PHNYGFIPRTICEDS---DPMD--VLVLM---QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 153 (214)
Q Consensus 87 P~NYGfIP~T~~~Dg---DPLD--vlvl~---~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i 153 (214)
|++ +|||.-+-.|. ||-. -+..+ ...+..|+.+++|++|+- .|++ +-++++ ...+|..+.+
T Consensus 103 p~~-ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~~ 171 (176)
T PTZ00162 103 PLK-AFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGPI 171 (176)
T ss_pred CeE-EEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCcc
Confidence 677 77776654321 1100 12222 245788999999999994 3443 346666 4445544443
No 31
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.55 E-value=87 Score=20.89 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhccCC------C-----ceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------N-----KKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------g-----K~v~~~~~~~~~~A~~vI~~~~ 201 (214)
..++|.+||..|-..+ + +...+..|.+.++|.+.++..+
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 4578999999884321 2 3455678999999999988764
No 32
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=20.47 E-value=1.2e+02 Score=19.64 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le---------g--K~v~~~~~~~~~~A~~vI~~~~ 201 (214)
..++|+++|..|-... + +...+..|.+.++|.+++++..
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 4568999999997642 1 2245567899999998887653
No 33
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=20.27 E-value=64 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHhccCC
Q 028079 160 PPHRLAEIRRFFEDYKKNE 178 (214)
Q Consensus 160 ~~~~l~~I~~fF~~YK~le 178 (214)
.|.++.-|++||+.|..|-
T Consensus 52 Rp~Li~~vee~yr~YrsLA 70 (74)
T PF07765_consen 52 RPELISLVEEFYRSYRSLA 70 (74)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998653
Done!