Query 028079
Match_columns 214
No_of_seqs 141 out of 1093
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 3.2E-75 1.1E-79 489.5 15.8 175 35-209 1-175 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 5.3E-73 1.8E-77 481.7 18.3 178 29-206 15-196 (196)
3 2prd_A Pyrophosphate phosphohy 100.0 1E-72 3.5E-77 472.8 19.6 171 36-206 1-174 (174)
4 3fq3_A Inorganic pyrophosphata 100.0 1.3E-72 4.3E-77 479.6 19.8 177 30-206 16-196 (197)
5 3ld3_A Inorganic pyrophosphata 100.0 5.3E-72 1.8E-76 476.4 19.3 177 30-206 16-196 (199)
6 2au7_A Inorganic pyrophosphata 100.0 3E-71 1E-75 464.2 20.4 170 37-206 1-174 (175)
7 2bqx_A Inorganic pyrophosphata 100.0 5.9E-71 2E-75 461.8 18.0 169 37-206 2-173 (173)
8 3d53_A Inorganic pyrophosphata 100.0 2E-70 6.7E-75 458.5 18.4 167 36-203 2-172 (173)
9 3tr4_A Inorganic pyrophosphata 100.0 3.8E-70 1.3E-74 458.6 18.2 167 39-206 6-176 (178)
10 1qez_A Ppase, S-ppase, protein 100.0 3.1E-69 1.1E-73 451.3 19.2 167 40-206 2-171 (173)
11 1e9g_A Ppase, inorganic pyroph 100.0 1.8E-70 6.2E-75 488.5 12.1 197 13-211 6-233 (286)
12 1sxv_A Inorganic pyrophosphata 100.0 9.1E-68 3.1E-72 441.9 15.8 158 49-206 11-169 (172)
13 2l76_A Nfatc2-interacting prot 37.7 39 0.0013 25.1 4.2 63 46-111 17-94 (95)
14 3goe_A DNA repair protein RAD6 34.1 32 0.0011 25.1 3.0 20 83-108 62-81 (82)
15 1jo6_A KCNMB2, potassium large 31.5 7.1 0.00024 25.5 -0.7 21 86-106 2-33 (45)
16 2cqh_A IGF-II mRNA-binding pro 30.4 62 0.0021 21.7 4.1 39 163-201 21-65 (93)
17 2cqb_A Peptidyl-prolyl CIS-tra 29.6 59 0.002 22.2 3.9 38 163-200 25-74 (102)
18 1why_A Hypothetical protein ri 29.2 44 0.0015 22.8 3.1 38 163-200 30-73 (97)
19 2ku7_A MLL1 PHD3-CYP33 RRM chi 28.4 66 0.0022 23.2 4.1 37 163-199 76-124 (140)
20 1x5s_A Cold-inducible RNA-bind 28.1 86 0.0029 21.3 4.6 39 163-201 25-75 (102)
21 2dgt_A RNA-binding protein 30; 28.0 81 0.0028 21.2 4.3 38 163-200 23-64 (92)
22 2e5j_A Methenyltetrahydrofolat 27.6 88 0.003 21.3 4.5 38 163-200 32-76 (97)
23 3bs9_A Nucleolysin TIA-1 isofo 27.5 59 0.002 21.4 3.5 39 163-201 19-69 (87)
24 2hvz_A Splicing factor, argini 26.7 1.2E+02 0.004 20.6 5.0 39 163-201 13-58 (101)
25 2cqc_A Arginine/serine-rich sp 25.5 72 0.0024 21.3 3.7 38 163-200 28-77 (95)
26 2dha_A FLJ20171 protein; RRM d 25.3 68 0.0023 23.8 3.7 38 162-199 35-87 (123)
27 1wf1_A RNA-binding protein RAL 25.3 43 0.0015 23.5 2.5 38 163-200 41-82 (110)
28 2hzc_A Splicing factor U2AF 65 24.3 77 0.0026 20.8 3.6 35 163-197 19-70 (87)
29 3mdf_A Peptidyl-prolyl CIS-tra 24.2 62 0.0021 21.2 3.1 37 164-200 21-69 (85)
30 2x1f_A MRNA 3'-END-processing 23.7 93 0.0032 21.0 4.0 38 163-200 15-64 (96)
31 2dgp_A Bruno-like 4, RNA bindi 23.3 1.2E+02 0.004 20.8 4.5 39 163-201 26-76 (106)
32 2dgs_A DAZ-associated protein 23.1 67 0.0023 21.9 3.1 36 163-198 23-70 (99)
33 2dgu_A Heterogeneous nuclear r 22.8 76 0.0026 21.9 3.4 38 163-200 24-65 (103)
34 3p5t_L Cleavage and polyadenyl 22.5 92 0.0031 20.9 3.8 38 163-200 14-65 (90)
35 2cph_A RNA binding motif prote 22.5 1.1E+02 0.0038 20.9 4.3 38 163-200 28-78 (107)
36 2dh8_A DAZ-associated protein 22.4 61 0.0021 22.3 2.8 37 163-199 29-77 (105)
37 1x4a_A Splicing factor, argini 22.3 94 0.0032 21.5 3.9 39 163-201 35-82 (109)
38 2la6_A RNA-binding protein FUS 22.3 72 0.0025 21.7 3.2 38 163-200 26-83 (99)
39 2kvi_A Nuclear polyadenylated 22.2 73 0.0025 21.7 3.2 38 163-200 24-65 (96)
40 2la4_A Nuclear and cytoplasmic 22.2 1.1E+02 0.0037 20.8 4.2 38 163-200 40-83 (101)
41 2xnq_A Nuclear polyadenylated 22.2 73 0.0025 22.0 3.2 38 163-200 36-77 (97)
42 1x5u_A Splicing factor 3B subu 22.1 91 0.0031 21.3 3.7 37 163-199 28-76 (105)
43 3md1_A Nuclear and cytoplasmic 22.1 75 0.0026 20.6 3.1 38 163-200 14-63 (83)
44 2ywk_A Putative RNA-binding pr 22.0 69 0.0024 21.5 3.0 38 163-200 29-77 (95)
45 2dnz_A Probable RNA-binding pr 21.9 99 0.0034 20.6 3.8 39 163-201 18-68 (95)
46 2cpd_A Apobec-1 stimulating pr 21.8 82 0.0028 21.5 3.4 38 163-200 28-71 (99)
47 2dnp_A RNA-binding protein 14; 21.6 88 0.003 20.9 3.5 38 163-200 22-63 (90)
48 2kxn_B Transformer-2 protein h 21.4 95 0.0032 22.8 3.9 38 163-200 59-108 (129)
49 1x5t_A Splicing factor 3B subu 21.3 1.2E+02 0.004 20.3 4.1 37 163-199 18-67 (96)
50 2yue_A Protein neuralized; str 21.2 54 0.0018 26.3 2.6 38 105-149 36-76 (168)
51 2dgw_A Probable RNA-binding pr 21.2 73 0.0025 21.3 3.0 35 163-198 23-68 (91)
52 2mss_A Protein (musashi1); RNA 21.1 99 0.0034 19.7 3.5 36 163-198 12-59 (75)
53 2ela_A Adapter protein contain 21.1 61 0.0021 25.9 2.9 35 89-134 11-45 (175)
54 3mab_A Uncharacterized protein 20.8 55 0.0019 23.9 2.3 21 156-176 67-87 (93)
55 1iqt_A AUF1, heterogeneous nuc 20.7 78 0.0027 20.2 2.9 36 163-198 12-59 (75)
56 2ek1_A RNA-binding protein 12; 20.6 65 0.0022 21.6 2.6 38 163-200 28-77 (95)
57 2cqi_A Nucleolysin TIAR; RNA r 20.3 1E+02 0.0035 21.0 3.7 38 163-200 28-75 (103)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=3.2e-75 Score=489.46 Aligned_cols=175 Identities=45% Similarity=0.803 Sum_probs=170.5
Q ss_pred cCCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 028079 35 AHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 114 (214)
Q Consensus 35 ~spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 114 (214)
+|||||||++.+.|+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 1 ~spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~ 80 (178)
T 3q46_A 1 MNPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPV 80 (178)
T ss_dssp CCTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCC
T ss_pred CCccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCCCceeEeccccCHHHHH
Q 028079 115 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAI 194 (214)
Q Consensus 115 ~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~legK~v~~~~~~~~~~A~ 194 (214)
+|||+++|||||+|+|+|+||+|||||||+.+||+|++|+|++|||++++++|+|||++||.+|||++++.+|.++++|+
T Consensus 81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~ 160 (178)
T 3q46_A 81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAK 160 (178)
T ss_dssp CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHH
T ss_pred CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028079 195 EAIKYSMDLYASYIV 209 (214)
Q Consensus 195 ~vI~~~~~~~~~~~~ 209 (214)
++|++|+++|++++.
T Consensus 161 ~~I~~~~~~~~~~~~ 175 (178)
T 3q46_A 161 REILRAIEMYKEKFG 175 (178)
T ss_dssp HHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=5.3e-73 Score=481.65 Aligned_cols=178 Identities=37% Similarity=0.611 Sum_probs=167.6
Q ss_pred cCCCcccCCCCCCCCCCCCCceeEEEEEeCCCCC-ceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEE
Q 028079 29 SHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 107 (214)
Q Consensus 29 ~~~~~~~spwHdipl~~~~p~~v~~VIEIP~gs~-~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvl 107 (214)
..+|+.+|+||+||++.+.|+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVL 94 (196)
T ss_dssp --------CGGGSCSCSBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTSSCCEEE
T ss_pred cccCCCCCchhhCCCCCCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCCCceEEE
Confidence 3578899999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCC--CCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEe
Q 028079 108 VLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDV 184 (214)
Q Consensus 108 vl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~d--p~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~ 184 (214)
||++.|++|||+++|||||+|.|+|+||+|||||||+++| |+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (196)
T 3gvf_A 95 VITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKV 174 (196)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999999 999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHH
Q 028079 185 EDFLPAEAAIEAIKYSMDLYAS 206 (214)
Q Consensus 185 ~~~~~~~~A~~vI~~~~~~~~~ 206 (214)
.+|.++++|+++|++|+++|++
T Consensus 175 ~gw~~~~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 175 EGWDGIDAAHKEITDGVANFKK 196 (196)
T ss_dssp EEEECHHHHHHHHHHHHHHHTC
T ss_pred ccCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999963
No 3
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=1e-72 Score=472.81 Aligned_cols=171 Identities=40% Similarity=0.677 Sum_probs=168.7
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 028079 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 115 (214)
Q Consensus 36 spwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 115 (214)
|+||+||++++.|+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~h~ip~~~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLL 80 (174)
T ss_dssp CCGGGSCCCTTTTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEECSSCCC
T ss_pred CCcccCCCCCCCCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEECCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeeeEeeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCC---CceeEeccccCHHH
Q 028079 116 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE---NKKVDVEDFLPAEA 192 (214)
Q Consensus 116 ~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le---gK~v~~~~~~~~~~ 192 (214)
|||+++||+||+|+|+|+||+|||||||+.+||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 81 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~ 160 (174)
T 2prd_A 81 PGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160 (174)
T ss_dssp TTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028079 193 AIEAIKYSMDLYAS 206 (214)
Q Consensus 193 A~~vI~~~~~~~~~ 206 (214)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 161 ALEEVRACIARYKG 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999973
No 4
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=1.3e-72 Score=479.64 Aligned_cols=177 Identities=36% Similarity=0.640 Sum_probs=167.7
Q ss_pred CCCcccCCCCCCCCCCCCCceeEEEEEeCCC-CCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEE
Q 028079 30 HRSVAAHPWHDLEIGPGAPAVCNCVVEIGKG-GKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLV 108 (214)
Q Consensus 30 ~~~~~~spwHdipl~~~~p~~v~~VIEIP~g-s~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlv 108 (214)
..|..+|+||+||++++.|+.||||||||+| |++|||+|+++|.|++||++++++.||+|||||||||++|||||||||
T Consensus 16 ~~g~~im~~~~ip~g~~~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPLDvlv 95 (197)
T 3fq3_A 16 TQGPGSMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLV 95 (197)
T ss_dssp ------CCGGGSCSCSSTTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEE
T ss_pred cCCCCcCCHHHCCCCCCCCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCCCceEEEE
Confidence 5788899999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred ecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEec
Q 028079 109 LMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVE 185 (214)
Q Consensus 109 l~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~ 185 (214)
|++.|++|||+++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.
T Consensus 96 l~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v~ 175 (197)
T 3fq3_A 96 CNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIG 175 (197)
T ss_dssp CCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEC
T ss_pred EcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCCCCeEEeC
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999 8999999
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q 028079 186 DFLPAEAAIEAIKYSMDLYAS 206 (214)
Q Consensus 186 ~~~~~~~A~~vI~~~~~~~~~ 206 (214)
+|.++++|+++|++|+++|++
T Consensus 176 ~~~~~~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 176 DWGDEDYARKFIVEAIERAKG 196 (197)
T ss_dssp CCBCHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999975
No 5
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=5.3e-72 Score=476.44 Aligned_cols=177 Identities=37% Similarity=0.595 Sum_probs=164.2
Q ss_pred CCCcccCCCCCCCCCCCCCceeEEEEEeCCCC-CceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEE
Q 028079 30 HRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLV 108 (214)
Q Consensus 30 ~~~~~~spwHdipl~~~~p~~v~~VIEIP~gs-~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlv 108 (214)
..|..+|+||+||++++.|+.||||||||||| ++|||+|+++|.|++||++++++.||+|||||||||++|||||||||
T Consensus 16 ~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlv 95 (199)
T 3ld3_A 16 TQGPGSMNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLV 95 (199)
T ss_dssp ----------CCCSCTTTTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEE
T ss_pred cCCCccCChHHCCCCCCCCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCCceEEEE
Confidence 57788999999999999999999999999998 59999999999999999999999999999999999999999999999
Q ss_pred ecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEec
Q 028079 109 LMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVE 185 (214)
Q Consensus 109 l~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~ 185 (214)
|++.|++|||+++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.
T Consensus 96 l~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~ 175 (199)
T 3ld3_A 96 LARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVG 175 (199)
T ss_dssp CCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEE
T ss_pred ecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEec
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999998 7999999
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q 028079 186 DFLPAEAAIEAIKYSMDLYAS 206 (214)
Q Consensus 186 ~~~~~~~A~~vI~~~~~~~~~ 206 (214)
+|.++++|+++|++|+++|++
T Consensus 176 gw~~~~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 176 CWQDAASAKELIRSAIIAAKK 196 (199)
T ss_dssp EEEEHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 6
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=3e-71 Score=464.18 Aligned_cols=170 Identities=39% Similarity=0.632 Sum_probs=167.9
Q ss_pred CCCCCCCCCCCCceeEEEEEeCCCCC-ceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 028079 37 PWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 115 (214)
Q Consensus 37 pwHdipl~~~~p~~v~~VIEIP~gs~-~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 115 (214)
+||+||++++.|+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~~ip~~~~~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQ 80 (175)
T ss_dssp CGGGCCSCSBTTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCCC
T ss_pred CcccCCCCCCCCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEECCCCCC
Confidence 69999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHH
Q 028079 116 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 192 (214)
Q Consensus 116 ~G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~ 192 (214)
|||+++||+||+|.|+|+||+|||||||+.+ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~ 160 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEccccCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028079 193 AIEAIKYSMDLYAS 206 (214)
Q Consensus 193 A~~vI~~~~~~~~~ 206 (214)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 161 AKAEIVASFERAKN 174 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 7
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=5.9e-71 Score=461.77 Aligned_cols=169 Identities=41% Similarity=0.687 Sum_probs=161.6
Q ss_pred CCCCCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCC
Q 028079 37 PWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLP 116 (214)
Q Consensus 37 pwHdipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~ 116 (214)
+||+||++++ |+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.|
T Consensus 2 ~~~~ip~~~~-p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~ 80 (173)
T 2bqx_A 2 NLEKLEVSHD-ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQA 80 (173)
T ss_dssp -----CCCEE-TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECCSSCCCT
T ss_pred CcccCCCCCC-CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEECCCCCCC
Confidence 8999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHH
Q 028079 117 GSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAA 193 (214)
Q Consensus 117 G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A 193 (214)
||+++||+||+|+|+|+||+|||||||+.+ ||+|+++++++|||++++++|+|||++||.+| ||++++.+|.++++|
T Consensus 81 G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A 160 (173)
T 2bqx_A 81 GSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESA 160 (173)
T ss_dssp TCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHHHH
T ss_pred ceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcCcCHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028079 194 IEAIKYSMDLYAS 206 (214)
Q Consensus 194 ~~vI~~~~~~~~~ 206 (214)
+++|++|+++|++
T Consensus 161 ~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 161 IKVLEKAIKAYQG 173 (173)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999964
No 8
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=2e-70 Score=458.53 Aligned_cols=167 Identities=40% Similarity=0.624 Sum_probs=164.1
Q ss_pred CCCCCCCCCCCCCceeEEEEEeCCCCC-ceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 028079 36 HPWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 114 (214)
Q Consensus 36 spwHdipl~~~~p~~v~~VIEIP~gs~-~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 114 (214)
++||+||++++ |+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 2 m~~~~ip~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~ 80 (173)
T 3d53_A 2 MFIKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPV 80 (173)
T ss_dssp -CGGGSCSCSS-TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCC-CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEECCCcc
Confidence 48999999999 999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 028079 115 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 191 (214)
Q Consensus 115 ~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~ 191 (214)
.|||+++||+||+|+|+|+||+|||||||+.+ ||+|+++++++|||++++++|+|||++||.+| ||++++.+|.+++
T Consensus 81 ~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~ 160 (173)
T 3d53_A 81 VPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKV 160 (173)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 028079 192 AAIEAIKYSMDL 203 (214)
Q Consensus 192 ~A~~vI~~~~~~ 203 (214)
+|+++|++|+++
T Consensus 161 ~A~~~I~~~~~~ 172 (173)
T 3d53_A 161 KAETLIKEGIDR 172 (173)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 9
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=3.8e-70 Score=458.58 Aligned_cols=167 Identities=38% Similarity=0.635 Sum_probs=162.2
Q ss_pred CCCCCCCCCCceeEEEEEeCCCCC-ceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCc
Q 028079 39 HDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPG 117 (214)
Q Consensus 39 Hdipl~~~~p~~v~~VIEIP~gs~-~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G 117 (214)
|+||++++. +.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|++||
T Consensus 6 h~ip~g~~~-~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp --CCCEEET-TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTT
T ss_pred ccCCCCCCC-CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECCCCCCCe
Confidence 999999887 99999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHH
Q 028079 118 SFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 194 (214)
Q Consensus 118 ~vi~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A~ 194 (214)
|+++|||||+|+|+|+||+|||||||+.+ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~ 164 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAK 164 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHH
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCcCHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028079 195 EAIKYSMDLYAS 206 (214)
Q Consensus 195 ~vI~~~~~~~~~ 206 (214)
++|++|+++|++
T Consensus 165 ~~I~~~~~~~~~ 176 (178)
T 3tr4_A 165 KEFEASIVRFKE 176 (178)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 10
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=3.1e-69 Score=451.34 Aligned_cols=167 Identities=45% Similarity=0.748 Sum_probs=162.7
Q ss_pred CCCCCCCCCceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCcce
Q 028079 40 DLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSF 119 (214)
Q Consensus 40 dipl~~~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v 119 (214)
+||.+++.|+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.|||+
T Consensus 2 ~i~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~G~v 81 (173)
T 1qez_A 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSV 81 (173)
T ss_dssp CCCSCTTTTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTTCE
T ss_pred CcCCCCCCCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCCCCCccE
Confidence 56777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEeeeeCCCCccEEEEEeCC--CCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHHHH
Q 028079 120 LRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEA 196 (214)
Q Consensus 120 i~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A~~v 196 (214)
++||+||+|+|+|+||+|||||||+.+ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~ 161 (173)
T 1qez_A 82 IEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNR 161 (173)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHH
T ss_pred EEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHH
Q 028079 197 IKYSMDLYAS 206 (214)
Q Consensus 197 I~~~~~~~~~ 206 (214)
|++|+++|++
T Consensus 162 I~~~~~~~~~ 171 (173)
T 1qez_A 162 IQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 11
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=1.8e-70 Score=488.54 Aligned_cols=197 Identities=26% Similarity=0.427 Sum_probs=185.5
Q ss_pred CCCCCCCcchhhhhcccCCCcccCCCCCCCCCCCCC-ceeEEEEEeCCCCCceEEEecCC-----------CCeEEeeec
Q 028079 13 SGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAP-AVCNCVVEIGKGGKVKYELDKAS-----------GLIKVDRVL 80 (214)
Q Consensus 13 ~~~~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p-~~v~~VIEIP~gs~~KyE~d~~~-----------g~i~~DR~l 80 (214)
.+|++++.++|++ +...+..+||||+||++++.+ +.|||||||||||++|||+|+++ |.+++||++
T Consensus 6 ~~G~~~t~~~r~~--~~~~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~l 83 (286)
T 1e9g_A 6 QIGAKNTLEYKVY--IEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNC 83 (286)
T ss_dssp EEEETTSTTCEEE--EEETTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCEE
T ss_pred eecCCCCcceEEE--EEeCCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEecc
Confidence 4689999999997 455689999999999998864 89999999999999999999987 778889999
Q ss_pred ccccccccccCcccccc------------CCCCCcceEEEecCccCCCcceEEEEEeeeEeeeeCCCCccEEEEEeCCCC
Q 028079 81 YSSVVYPHNYGFIPRTI------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDP 148 (214)
Q Consensus 81 ~~~~~yP~NYGfIP~T~------------~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~KiiaV~~~dp 148 (214)
++++.||+||||||||| +|||||||||||++.|++||++++|||||+|+|+|+||+|||||||+.+||
T Consensus 84 ~~~~~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~Dp 163 (286)
T 1e9g_A 84 FPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDP 163 (286)
T ss_dssp TTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTST
T ss_pred CCCCCCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCCc
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCh---hHHHHHHHHHHHhccCCCce---eEe-ccccCHHHHHHHHHHHHHHHHHHHHhh
Q 028079 149 EFRHYKDIKELPP---HRLAEIRRFFEDYKKNENKK---VDV-EDFLPAEAAIEAIKYSMDLYASYIVES 211 (214)
Q Consensus 149 ~~~~i~~l~Dl~~---~~l~~I~~fF~~YK~legK~---v~~-~~~~~~~~A~~vI~~~~~~~~~~~~~~ 211 (214)
+|++|+|++||++ +++++|+|||++||.+|||+ +.+ ++|.++++|+++|++||++|++++.++
T Consensus 164 ~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~~~ 233 (286)
T 1e9g_A 164 LAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233 (286)
T ss_dssp TGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999977 89999999999999999998 344 799999999999999999999998754
No 12
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=9.1e-68 Score=441.94 Aligned_cols=158 Identities=37% Similarity=0.737 Sum_probs=154.9
Q ss_pred ceeEEEEEeCCCCCceEEEecCCCCeEEeeecccccccccccCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeE
Q 028079 49 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (214)
Q Consensus 49 ~~v~~VIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l 128 (214)
..|||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|++|||+++|||||+|
T Consensus 11 ~~~nvvIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~r~iGvl 90 (172)
T 1sxv_A 11 MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMF 90 (172)
T ss_dssp CCEEEEEEECTTCCEEC-CCTTTCCCCCCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECCCCCeEEEEEcCCCCEEEEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEEEEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCccEEEEEeCCCCCccCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHHHHHHHHHHHHHH
Q 028079 129 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 206 (214)
Q Consensus 129 ~miD~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A~~vI~~~~~~~~~ 206 (214)
.|+|+||+|||||||+.+||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+++|++|+++|++
T Consensus 91 ~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 91 RMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 169 (172)
T ss_dssp EEEETTEECCEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCCEEEEEeCCCCCccccCChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999986
No 13
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=37.74 E-value=39 Score=25.11 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=41.0
Q ss_pred CCCceeEEEEEeCCCCCceEEEecCCCCeEE------------e--eecccccccccccCccccccC-CCCCcceEEEec
Q 028079 46 GAPAVCNCVVEIGKGGKVKYELDKASGLIKV------------D--RVLYSSVVYPHNYGFIPRTIC-EDSDPMDVLVLM 110 (214)
Q Consensus 46 ~~p~~v~~VIEIP~gs~~KyE~d~~~g~i~~------------D--R~l~~~~~yP~NYGfIP~T~~-~DgDPLDvlvl~ 110 (214)
.....+|+-|- -+|+...|.+-+.+.+=++ + |+++-+. +.|=---|++++ +|||-+|++++.
T Consensus 17 ~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~--rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 17 ETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET--ELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp SCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE--ECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc--CCCCCCCHhHcCCCCCCEEEEEEec
Confidence 34566888888 5788899999887764111 1 3333222 234444566665 899999999987
Q ss_pred C
Q 028079 111 Q 111 (214)
Q Consensus 111 ~ 111 (214)
+
T Consensus 94 ~ 94 (95)
T 2l76_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=34.15 E-value=32 Score=25.07 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.1
Q ss_pred ccccccccCccccccCCCCCcceEEE
Q 028079 83 SVVYPHNYGFIPRTICEDSDPMDVLV 108 (214)
Q Consensus 83 ~~~yP~NYGfIP~T~~~DgDPLDvlv 108 (214)
+..+|.+|+. .|||-+||++
T Consensus 62 p~~tp~Dlem------eD~D~IDvmL 81 (82)
T 3goe_A 62 PNDQVQSTEL------EDEDQVSVVL 81 (82)
T ss_dssp TTSBGGGSSC------CTTCEEEEEC
T ss_pred ccCChhhhCC------cCCceeeeee
Confidence 4566777765 6999999974
No 15
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=31.52 E-value=7.1 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=15.6
Q ss_pred cccccCccccccC-----------CCCCcceE
Q 028079 86 YPHNYGFIPRTIC-----------EDSDPMDV 106 (214)
Q Consensus 86 yP~NYGfIP~T~~-----------~DgDPLDv 106 (214)
+||.++=+++|+. .||||||+
T Consensus 2 ~~~~~~k~~~~~~~~~~R~iy~~~~dgd~~dk 33 (45)
T 1jo6_A 2 FIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDK 33 (45)
T ss_dssp CCSSCCCCCCSSSSCSTTSSHHHHHHHHTTTS
T ss_pred cccccccceeeeccccccccccccccCCcccc
Confidence 4677777777773 48999997
No 16
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.39 E-value=62 Score=21.74 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcc-CCC-----ceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKK-NEN-----KKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~-leg-----K~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-. .+. +.+.+..|.+.+.|.+.|++.+
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHcc
Confidence 44678999999987 443 3355667899999988887543
No 17
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.56 E-value=59 Score=22.23 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-..+ .+.+.+..|.+.++|.+.|+..
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3568899999985432 1335667899999999888753
No 18
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.21 E-value=44 Score=22.80 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l------egK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-.. .+|.+.+..|.+.++|.+.|+..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence 346789999999643 24556677889999998887753
No 19
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=28.40 E-value=66 Score=23.17 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccC------------CCceeEeccccCHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKY 199 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l------------egK~v~~~~~~~~~~A~~vI~~ 199 (214)
.-++|+++|..|-.. ..|.+.+..|.+.++|.+.|+.
T Consensus 76 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 76 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 346899999998432 1244667789999999888764
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.14 E-value=86 Score=21.33 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-..+ .+.+.+..|.+.++|.+.|+..+
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 4467899999984322 12356678999999998887543
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.04 E-value=81 Score=21.16 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~leg----K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-.... +.+.+..|.+.++|.+.|+..
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 44678999999965542 335566889999998888754
No 22
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.58 E-value=88 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCC-------CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|+..
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 4467899999996653 2345666789999998888653
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=27.54 E-value=59 Score=21.37 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.++...
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 346789999988432 12 2355667899999998887543
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=26.69 E-value=1.2e+02 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccCC-------CceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.+++-+
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHC
Confidence 4467899999996543 24456678899999998887543
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.52 E-value=72 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|+..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 4567999999985321 2 225566889999998888754
No 26
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.30 E-value=68 Score=23.85 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhccC-------------CCc--eeEeccccCHHHHHHHHHH
Q 028079 162 HRLAEIRRFFEDYKKN-------------ENK--KVDVEDFLPAEAAIEAIKY 199 (214)
Q Consensus 162 ~~l~~I~~fF~~YK~l-------------egK--~v~~~~~~~~~~A~~vI~~ 199 (214)
-.-++|++||..|... .|+ -+.+..|.+.++|.+.|+.
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 3556899999999532 233 2566789999999988864
No 27
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=25.26 E-value=43 Score=23.48 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|++.
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 82 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGE 82 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 5678999999997654 2445566788888888887653
No 28
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=24.30 E-value=77 Score=20.77 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHh----c-------c------CCCceeEeccccCHHHHHHHH
Q 028079 163 RLAEIRRFFEDY----K-------K------NENKKVDVEDFLPAEAAIEAI 197 (214)
Q Consensus 163 ~l~~I~~fF~~Y----K-------~------legK~v~~~~~~~~~~A~~vI 197 (214)
.-++|+++|..| - . ...|.+.+..|.+.+.|.+.+
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 346889999999 3 1 112445666788999988876
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=24.22 E-value=62 Score=21.17 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 028079 164 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 164 l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
-++|+++|..|-... | +.+.+..|.+.+.|.+.++..
T Consensus 21 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 21 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 468899999985321 2 235566789999998888654
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.73 E-value=93 Score=21.02 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 15 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3467899999984211 2 335667889999998888754
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=23.30 E-value=1.2e+02 Score=20.80 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+..+
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3457899999985321 23466678899999998887543
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.08 E-value=67 Score=21.87 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIK 198 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~ 198 (214)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|+
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 4457899999884211 23466678899999988875
No 33
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=22.82 E-value=76 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... -+.+.+..|.+.++|.+.|+..
T Consensus 24 t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 24 TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEM 65 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHH
Confidence 4467899999996433 1335566789999998888753
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=22.53 E-value=92 Score=20.89 Aligned_cols=38 Identities=0% Similarity=-0.070 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhc--cCC----------Cc--eeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYK--KNE----------NK--KVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK--~le----------gK--~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|- ... |+ .+.+..|.+.++|.+.|+..
T Consensus 14 t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 14 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 3457889999997 322 22 25566789999998887653
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.49 E-value=1.1e+02 Score=20.88 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccC-----------CC--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN-----------EN--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l-----------eg--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 28 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 456789999998421 11 346677899999999888754
No 36
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.36 E-value=61 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKY 199 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~ 199 (214)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4567899999994321 2 23556678888888888765
No 37
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.33 E-value=94 Score=21.54 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCC---------CceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE---------NKKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le---------gK~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-... .|.+.+..|.+.++|.+.|+..+
T Consensus 35 t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 35 RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 4467899999985321 13356678899999988887543
No 38
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=22.31 E-value=72 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccCCC--------------------ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNEN--------------------KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~leg--------------------K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-.... |.+.+..|.+.++|.+.|+..
T Consensus 26 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 26 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 45678999998864432 224556788999998887643
No 39
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=22.24 E-value=73 Score=21.70 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~leg----K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-.... |.+.+..|.+.+.|.+.|+.-
T Consensus 24 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 65 (96)
T 2kvi_A 24 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECE 65 (96)
T ss_dssp CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 44678999999965542 345566789999999888753
No 40
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.23 E-value=1.1e+02 Score=20.80 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le------gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|+..
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVAL 83 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHh
Confidence 3467899999996543 3456667889999998888743
No 41
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=22.17 E-value=73 Score=21.99 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|+.-
T Consensus 36 t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 36 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 4567899999996543 2445667789999998888753
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.13 E-value=91 Score=21.34 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKY 199 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~ 199 (214)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 28 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 456789999999432 11 22566778999999888864
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.06 E-value=75 Score=20.61 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... | +.+.+..|.+.++|.+.++..
T Consensus 14 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 3467899999884321 2 235566789999998887643
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=22.01 E-value=69 Score=21.49 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccC---------CC--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l---------eg--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.|+..
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 446789999998422 12 235566788999998887754
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=99 Score=20.64 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 201 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~~ 201 (214)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|+..+
T Consensus 18 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 18 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4457899999884321 1 2356678899999998887543
No 46
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.85 E-value=82 Score=21.46 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh--ccCC----CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDY--KKNE----NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~Y--K~le----gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..| -... -+.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 456789999999 2221 1335566789999998887643
No 47
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=88 Score=20.87 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-... -+.+.+..|.+.++|.+.|+..
T Consensus 22 t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 22 TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 63 (90)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 4467899999996543 1235566789999998888754
No 48
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=21.44 E-value=95 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccC------------CCceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~l------------egK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+.+|..|-.. ..|.+.+..|.+.++|.+.|++.
T Consensus 59 te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 59 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 445789999998432 12335667899999999888754
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.26 E-value=1.2e+02 Score=20.28 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccCC-----------C--ceeEeccccCHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE-----------N--KKVDVEDFLPAEAAIEAIKY 199 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le-----------g--K~v~~~~~~~~~~A~~vI~~ 199 (214)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 18 t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 18 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3467899999984321 1 23566788999999888764
No 50
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.25 E-value=54 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=29.2
Q ss_pred eEEEecCccCCCcceEEEEEeeeEeeeeCCCCccE---EEEEeCCCCC
Q 028079 105 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDK---IIAVCADDPE 149 (214)
Q Consensus 105 Dvlvl~~~p~~~G~vi~vrviG~l~miD~ge~D~K---iiaV~~~dp~ 149 (214)
+.+|++++|+.+|+.+.+|+.- -+..|. =++|-..||.
T Consensus 36 ~givFS~RPl~~~E~~~v~I~~-------~~~~wsG~l~~GvT~~dP~ 76 (168)
T 2yue_A 36 RAITFSARPVRINERICVKFAE-------ISNNWNGGIRFGFTSNDPV 76 (168)
T ss_dssp CCEEEESSCCCSSCCEEEEEEE-------CCSSSSSCCEEEEESSCGG
T ss_pred ceEEEECCCCcCCCEEEEEEEe-------ecCCcceeEEEeeeecCHH
Confidence 5689999999999999999853 223343 5688888984
No 51
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.19 E-value=73 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIK 198 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le---------g--K~v~~~~~~~~~~A~~vI~ 198 (214)
.-++|+++|..| ... | +.+.+..|.+.++|.+.|+
T Consensus 23 t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 23 TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 446789999998 332 2 2255667899999988775
No 52
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=21.09 E-value=99 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIK 198 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~ 198 (214)
.-++|+.+|..|-... | +.+.+..|.+.+.|.+.++
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3457899999984321 1 2356677889988887664
No 53
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=21.05 E-value=61 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=15.9
Q ss_pred ccCccccccCCCCCcceEEEecCccCCCcceEEEEEeeeEeeeeCC
Q 028079 89 NYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 134 (214)
Q Consensus 89 NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~vi~vrviG~l~miD~g 134 (214)
.-|.+|..|+...|++. +....||-||.+.+....
T Consensus 11 ~~~~~~~~~~~~~~~~~-----------~~~f~vkYLGs~eV~~~~ 45 (175)
T 2ela_A 11 SSGLVPRGSHMTEDSIL-----------HQLFIVRFLGSMEVKSDD 45 (175)
T ss_dssp --------------CCC-----------CEEEEEEEEEEEEECSCC
T ss_pred cCCccCCCCCCCccccc-----------cceEEEEcceEEEecCCC
Confidence 56899999998888874 467889999999886543
No 54
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.76 E-value=55 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHHHhcc
Q 028079 156 IKELPPHRLAEIRRFFEDYKK 176 (214)
Q Consensus 156 l~Dl~~~~l~~I~~fF~~YK~ 176 (214)
..++++...+++++||...|.
T Consensus 67 w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 67 WHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GGGSCHHHHHHHHHHHHHHCC
T ss_pred HHHCCHHHHHHHHHHHHHhhc
Confidence 357899999999999999885
No 55
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=20.70 E-value=78 Score=20.15 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIK 198 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~ 198 (214)
.-++|+.+|..|-... | +...+..|.+.+.|.+.|+
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 3467899999985321 1 3355667888888888776
No 56
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=20.60 E-value=65 Score=21.63 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 4467899999886543 1 224556789999998888743
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.34 E-value=1e+02 Score=21.04 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccCC----------CceeEeccccCHHHHHHHHHHH
Q 028079 163 RLAEIRRFFEDYKKNE----------NKKVDVEDFLPAEAAIEAIKYS 200 (214)
Q Consensus 163 ~l~~I~~fF~~YK~le----------gK~v~~~~~~~~~~A~~vI~~~ 200 (214)
.-++|+++|..|-... +|.+.+..|.+.++|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cqi_A 28 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 75 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHh
Confidence 4567899999995321 2346667889999998888744
Done!