BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028080
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2
SV=1
Length = 204
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 2 GPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK 61
G ++ + ELG E +AR +D + G GLM V++ G+ V
Sbjct: 18 GKKRSYHDAAIELGNEL----VARSIDLV-YGGGSIGLMGLVSQAVFDGGRHV------- 65
Query: 62 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 121
G + P + ET R + + A ++D A +ALPGG GTL+E+
Sbjct: 66 -IGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSD-----AFIALPGGYGTLEEL 119
Query: 122 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
E++ QL P ++N D +Y LL F+ + G +
Sbjct: 120 LEVITWAQL----GIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFI 160
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1
Length = 244
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 70
+ ELG E +AR +D + G GLM V++ G+ V G
Sbjct: 41 AIELGKEL----VARNIDLV-YGGGSVGLMGLVSQAVHNGGRHVIGV---------IPKT 86
Query: 71 FHPY-LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 129
P + ET + S + A ++D A +ALPGG GTL+E+ E++A Q
Sbjct: 87 LMPREISGETVGEVKAVSDMHQRKAEMARQSD-----AFIALPGGYGTLEELLEVIAWAQ 141
Query: 130 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
L P ++N D +Y LL F+ + G +
Sbjct: 142 LGIHDK----PVGLLNVDGYYNPLLSFIDKAVEEGFI 174
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1
Length = 211
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 23 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 82
+AR +D + G GLM V++ G+ V G + P + ET
Sbjct: 42 VARGIDLV-YGGGSIGLMGLVSQAVYDGGRHV--------IGVIPKTLMTPEIIGETVGE 92
Query: 83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 142
R S + A ++D A +ALPGG GTL+E+ E++ QL P
Sbjct: 93 VRPVSDMHQRKAEMARQSD-----AFIALPGGYGTLEELLEVITWAQL----GIHHKPVG 143
Query: 143 VMNYDSFYKKLLDFLGDCEDWGTVA 167
++N D +Y LL F+ + G ++
Sbjct: 144 LLNVDGYYNSLLTFIDQAVEEGFIS 168
>sp|P46378|FAS6_RHOFA LOG family protein ORF6 in fasciation locus OS=Rhodococcus fascians
GN=fas6 PE=2 SV=1
Length = 198
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 23 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 82
IAR + GA GLM + A+ +G G VG +TA +P
Sbjct: 47 IARSKLRLVYGGARVGLMGTLANAALDSG----GTVVGVIPESFTA------IP------ 90
Query: 83 CRFFSARKHGLIDCAVRNDSCDRTAV--------VALPGGVGTLDEMFEILALIQLERIG 134
A HGL + V +D R A+ +ALPGGVGT +E FE+L L
Sbjct: 91 ----EAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHLGLHN 146
Query: 135 SELPVPFLVMNYDSFYKKLLDFL 157
P +++N + +Y+ LL ++
Sbjct: 147 K----PCVLLNDNEYYRPLLSYI 165
>sp|P47044|YJF5_YEAST LOG family protein YJL055W OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YJL055W PE=1 SV=1
Length = 245
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 157
A VA+PGG GT +E+ E + QL P ++ N D FY KLL+FL
Sbjct: 143 AFVAMPGGYGTFEEIMECITWSQLGIHNK----PIILFNIDGFYDKLLEFL 189
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2
OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1
Length = 213
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GT +E+ E++ QL I ++ P ++N D FY LL F+ D G V
Sbjct: 107 AFIALPGGYGTFEELLEVITWSQLG-IHTK---PVGLLNVDGFYDSLLTFIDKAVDEGFV 162
Query: 167 AKDEVASLWKICDSNSEALSYLAEFY 192
+ A + N+ L L E Y
Sbjct: 163 SS--TARRIIVSAPNAPQLLQLLEEY 186
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1
Length = 250
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 70
+ ELG E +AR +D + G GLM V++ G+ V G
Sbjct: 48 AVELGKEL----VARNIDLV-YGGGSVGLMGLVSQAVYNGGRHVIGV---------IPKT 93
Query: 71 FHPY-LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 129
P + ET + + + A ++D A +ALPGG GTL+E+ E++A Q
Sbjct: 94 LMPREITGETVGEVKAVADMHQRKAEMARQSD-----AFIALPGGYGTLEELLEVIAWAQ 148
Query: 130 LERIGSELPVPFLVMNYDSFYKKLLDFL 157
L + PV L N D +Y LL F+
Sbjct: 149 LGI--HDKPVGLL--NVDGYYNSLLSFI 172
>sp|Q84M85|LOGL5_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL5 OS=Oryza sativa subsp. japonica GN=LOGL5 PE=2 SV=1
Length = 246
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL RI + P ++N D +Y LL F+ G V
Sbjct: 131 AFIALPGGYGTLEELLEVITWAQL-RIHHK---PVGLLNVDGYYDSLLAFIDKAVHEGFV 186
Query: 167 A 167
+
Sbjct: 187 S 187
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7
OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2
Length = 217
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL G P ++N D +Y LL F+ D G +
Sbjct: 107 AFIALPGGYGTLEELLEVITWAQL---GIHRK-PVGLLNVDGYYNSLLTFIDKAVDEGFI 162
Query: 167 AKDEVASLWKICDSNSEAL-----SYLAEFYDLSS 196
+ +A + N++ L Y EF +++S
Sbjct: 163 SP--MARRIIVSAPNAKELVRQLEEYEPEFDEITS 195
>sp|Q851C7|LOGL4_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOG4 OS=Oryza sativa subsp. japonica GN=LOGL4 PE=3 SV=1
Length = 230
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GT++E+ EI+A QL P ++N D +Y LL + G +
Sbjct: 119 AFIALPGGYGTIEELLEIIAWAQLGIHNK----PVGLLNVDGYYNNLLSLFDKGVEEGFI 174
Query: 167 AKDEVA-SLWKICDSNSEALSYLAE 190
D A +++ + D+ E L+ L E
Sbjct: 175 --DAAARNIFVLADNAGELLTKLTE 197
>sp|Q5ZC82|LOG_ORYSJ Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
OS=Oryza sativa subsp. japonica GN=LOG PE=1 SV=1
Length = 242
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL P ++N D FY L F+ G +
Sbjct: 134 AFIALPGGYGTLEELLEVITWAQL----GIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFI 189
Query: 167 AKD 169
A+D
Sbjct: 190 AED 192
>sp|B7E7M8|LOGL9_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL9 OS=Oryza sativa subsp. japonica GN=LOGL9 PE=2 SV=1
Length = 227
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 22/147 (14%)
Query: 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 70
+ ELG E +AR +D + G GLM V + G V G G+
Sbjct: 67 AVELGKEL----VARKVDLV-YGGGSLGLMGEVAEAVRNGGGHVIGVIPTTLMGKEVTG- 120
Query: 71 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 130
ET R + + A R+D A VALPGG GTL+E+ E++A QL
Sbjct: 121 -------ETVGEVREVGSMHERKAEMARRSD-----AFVALPGGYGTLEEVVEVIAWAQL 168
Query: 131 ERIGSELPVPFLVMNYDSFYKKLLDFL 157
P ++N D +Y LL F+
Sbjct: 169 GIHAK----PVGLLNVDGYYDFLLAFV 191
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3
OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1
Length = 215
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 23 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY-LPLETYL 81
++R +D + G GLM V++ G+ V G P L ET
Sbjct: 42 VSRNIDLV-YGGGSIGLMGLVSQAVHDGGRHVIGI---------IPKTLMPRELTGETVG 91
Query: 82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 141
R + + A +D A +ALPGG GTL+E+ E++ QL P
Sbjct: 92 EVRAVADMHQRKAEMAKHSD-----AFIALPGGYGTLEELLEVITWAQL----GIHDKPV 142
Query: 142 LVMNYDSFYKKLLDFLGDCEDWGTVA 167
++N D +Y LL F+ + G ++
Sbjct: 143 GLLNVDGYYNSLLSFIDKAVEEGFIS 168
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4
OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1
Length = 215
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL + PV L N D +Y LL F+ + G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQLGI--HDKPVGLL--NVDGYYNSLLSFIDKAVEEGFI 167
Query: 167 AKD 169
+ +
Sbjct: 168 STN 170
>sp|Q0DFG8|LOGL8_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL8 OS=Oryza sativa subsp. japonica GN=LOGL8 PE=2 SV=3
Length = 266
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL P ++N D FY LL F+ + G +
Sbjct: 156 AFIALPGGYGTLEELLEVITWAQL----GIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFI 211
Query: 167 AKD 169
++
Sbjct: 212 TEE 214
>sp|Q8LBB7|LOG5_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5
OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 109 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
+ALPGG GTL+E+ E++A QL + PV L N D +Y LL F+ D G +
Sbjct: 109 IALPGGYGTLEELLEVIAWAQLGI--HDKPVGLL--NVDGYYNYLLTFIDKAVDDGFI 162
>sp|P48636|Y4923_PSEAE LOG family protein PA4923 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA4923 PE=3
SV=2
Length = 195
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED 162
A +ALPGG+GTL+E+FE+ QL P ++ + FY LL FL D
Sbjct: 102 AFIALPGGLGTLEELFEVWTWGQLGYHAK----PLGLLEVNGFYDPLLTFLDHLVD 153
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1
OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1
Length = 213
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GTL+E+ E++ QL + PV L N + +Y LL F+ + G +
Sbjct: 106 AFIALPGGYGTLEELLEVITWAQLGI--HDKPVGLL--NVEGYYNSLLSFIDKAVEEGFI 161
Query: 167 A 167
+
Sbjct: 162 S 162
>sp|Q5TKP8|LOGL7_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL7 OS=Oryza sativa subsp. japonica GN=LOGL7 PE=2 SV=1
Length = 223
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GT++E+ E++ QL + PV L N D +Y LL E G +
Sbjct: 115 AFIALPGGYGTMEELLEMITWCQLGI--HDKPVGLL--NVDGYYDPLLALFDKGEAEGFI 170
Query: 167 AKDEVASLWKICDSNSEALSYLAEFYDL 194
D ++ + SE L+ + ++ L
Sbjct: 171 NSD-CRQIFVSAPTASELLTKMEQYTRL 197
>sp|Q9LYV8|LOG6_ARATH Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOG6 OS=Arabidopsis thaliana GN=LOG6 PE=3 SV=2
Length = 201
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A + LPGG GTL+E+ E++ QL + PV L N D +Y LL F+ + G +
Sbjct: 117 AFITLPGGYGTLEELLEVITWAQLGI--HDKPVGLL--NVDGYYDALLLFIDKAVEEGFI 172
>sp|Q1ILN0|MUTL_KORVE DNA mismatch repair protein MutL OS=Koribacter versatilis (strain
Ellin345) GN=mutL PE=3 SV=1
Length = 647
Score = 33.9 bits (76), Expect = 0.92, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 114 GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS 173
G TLD++ + A I+LERIG P P+L N D ++ ++ G+ G ++K E+
Sbjct: 214 GNETLDQLIPLAAQIKLERIGLPKPPPWLRKNEDDEEEQTVE-PGEVRLHGFISKPEIQK 272
Query: 174 L 174
L
Sbjct: 273 L 273
>sp|Q8LR50|LOGL1_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase
LOGL1 OS=Oryza sativa subsp. japonica GN=LOGL1 PE=2 SV=1
Length = 223
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
A +ALPGG GT++E+ E++ QL + PV L N D +Y LL G +
Sbjct: 117 AFIALPGGYGTMEELLEMITWSQLGI--HDKPVGLL--NVDGYYDPLLALFDKGAAEGFI 172
Query: 167 AKD 169
D
Sbjct: 173 KAD 175
>sp|Q84MC2|LOG8_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8
OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1
Length = 216
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 107 AVVALPGGVGTLDEMFEILALIQL----ERIGSELPVPFLVMNYDSFYKKLL 154
A +ALPGG GT++E+ E++ QL + +G ++N D +Y LL
Sbjct: 108 AFIALPGGYGTMEELLEMITWSQLGIHKKTVG--------LLNVDGYYNNLL 151
>sp|P0ADS1|YGDH_SHIFL LOG family protein YgdH OS=Shigella flexneri GN=ygdH PE=3 SV=1
Length = 454
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG--EWTASNFHPYLPLETYLTC 83
L + +G GPG M+A KGA G +K + G E + P PL L
Sbjct: 176 LRELNICTGCGPGAMEAPMKGA-AVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELII 234
Query: 84 RFFSARKHGLIDCAVRNDSCDRTA--VVALPGGVGTLDEMFEILALI 128
+ D R ++ R A ++ PGGVGT +E+ +L ++
Sbjct: 235 ---------MPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGIL 272
>sp|P0ADR8|YGDH_ECOLI LOG family protein YgdH OS=Escherichia coli (strain K12) GN=ygdH
PE=1 SV=1
Length = 454
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG--EWTASNFHPYLPLETYLTC 83
L + +G GPG M+A KGA G +K + G E + P PL L
Sbjct: 176 LRELNICTGCGPGAMEAPMKGA-AVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELII 234
Query: 84 RFFSARKHGLIDCAVRNDSCDRTA--VVALPGGVGTLDEMFEILALI 128
+ D R ++ R A ++ PGGVGT +E+ +L ++
Sbjct: 235 ---------MPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGIL 272
>sp|P0ADR9|YGDH_ECOL6 LOG family protein YgdH OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=ygdH PE=3 SV=1
Length = 454
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG--EWTASNFHPYLPLETYLTC 83
L + +G GPG M+A KGA G +K + G E + P PL L
Sbjct: 176 LRELNICTGCGPGAMEAPMKGA-AVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELII 234
Query: 84 RFFSARKHGLIDCAVRNDSCDRTA--VVALPGGVGTLDEMFEILALI 128
+ D R ++ R A ++ PGGVGT +E+ +L ++
Sbjct: 235 ---------MPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGIL 272
>sp|P0ADS0|YGDH_ECO57 LOG family protein YgdH OS=Escherichia coli O157:H7 GN=ygdH PE=3
SV=1
Length = 454
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG--EWTASNFHPYLPLETYLTC 83
L + +G GPG M+A KGA G +K + G E + P PL L
Sbjct: 176 LRELNICTGCGPGAMEAPMKGA-AVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELII 234
Query: 84 RFFSARKHGLIDCAVRNDSCDRTA--VVALPGGVGTLDEMFEILALI 128
+ D R ++ R A ++ PGGVGT +E+ +L ++
Sbjct: 235 ---------MPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGIL 272
>sp|Q1WSN8|KUP_LACS1 Probable potassium transport system protein kup OS=Lactobacillus
salivarius (strain UCC118) GN=kup PE=3 SV=1
Length = 674
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 149 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKS 208
F KL D+L D E+W ++ +D L ++ + + L Y++ L+ +DKR ++V ++
Sbjct: 445 FGNKLRDYLSDEEEWVSL-RDYKDVLQELSNDDRIPL-YISNLVMLTKVDKRTYKVKRET 502
Query: 209 THGIV 213
+ I+
Sbjct: 503 LYSIL 507
>sp|O06986|YVDD_BACSU LOG family protein YvdD OS=Bacillus subtilis (strain 168) GN=yvdD
PE=1 SV=1
Length = 191
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 31 TWSGAGPGLMDAVTKGAMQ-AGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
+ G+ GLM + M+ G +G G +GE N L + R
Sbjct: 37 VYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQN------LTELIEVNGMHER 90
Query: 90 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 130
K + + A +++PGG GT +E+FE+L Q+
Sbjct: 91 KAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQI 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,562,391
Number of Sequences: 539616
Number of extensions: 3417004
Number of successful extensions: 7535
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7504
Number of HSP's gapped (non-prelim): 30
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)