Query 028080
Match_columns 214
No_of_seqs 125 out of 1121
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 7.9E-47 1.7E-51 313.1 18.6 164 4-191 13-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 7.7E-40 1.7E-44 276.7 17.8 167 4-192 28-196 (205)
3 PF03641 Lysine_decarbox: Poss 100.0 3.1E-38 6.8E-43 250.1 15.2 132 40-188 1-133 (133)
4 TIGR00725 conserved hypothetic 100.0 1.4E-35 2.9E-40 241.8 15.9 146 4-188 12-158 (159)
5 TIGR00732 dprA DNA protecting 99.0 2.7E-08 5.8E-13 85.2 15.0 142 10-187 62-219 (220)
6 PF02481 DNA_processg_A: DNA r 98.1 6.1E-05 1.3E-09 64.2 11.5 128 11-164 63-206 (212)
7 PRK10736 hypothetical protein; 97.3 0.012 2.5E-07 54.4 14.7 144 11-190 126-285 (374)
8 COG0758 Smf Predicted Rossmann 96.3 0.11 2.4E-06 47.6 13.2 145 11-191 130-289 (350)
9 PF12694 MoCo_carrier: Putativ 93.6 1 2.2E-05 36.4 9.8 98 31-146 1-98 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 92.0 0.26 5.7E-06 37.2 4.3 44 86-147 51-98 (113)
11 PRK10565 putative carbohydrate 87.9 4 8.8E-05 39.2 9.6 35 106-148 322-356 (508)
12 PF13528 Glyco_trans_1_3: Glyc 83.2 21 0.00045 30.9 11.2 64 106-190 252-316 (318)
13 KOG3614 Ca2+/Mg2+-permeable ca 81.8 5.4 0.00012 42.4 7.7 54 107-168 271-325 (1381)
14 COG1597 LCB5 Sphingosine kinas 73.8 7.1 0.00015 34.8 5.3 46 10-60 46-91 (301)
15 PRK13609 diacylglycerol glucos 70.3 25 0.00055 31.4 8.1 65 106-195 275-339 (380)
16 PRK13608 diacylglycerol glucos 70.2 8.3 0.00018 35.1 5.0 63 106-193 275-337 (391)
17 PF11071 DUF2872: Protein of u 67.8 13 0.00027 29.8 4.8 74 87-189 63-137 (141)
18 PF04101 Glyco_tran_28_C: Glyc 65.7 6.3 0.00014 31.2 2.9 68 106-192 74-142 (167)
19 COG0707 MurG UDP-N-acetylgluco 62.9 11 0.00024 34.6 4.3 84 81-194 237-324 (357)
20 PRK00696 sucC succinyl-CoA syn 61.5 1.3E+02 0.0028 27.5 13.8 72 105-191 311-384 (388)
21 PLN02605 monogalactosyldiacylg 59.2 33 0.00072 30.9 6.8 64 106-194 284-347 (382)
22 TIGR01133 murG undecaprenyldip 59.1 22 0.00048 30.9 5.4 70 106-196 252-323 (348)
23 PRK00726 murG undecaprenyldiph 56.8 33 0.00072 30.2 6.2 69 106-196 254-326 (357)
24 cd03785 GT1_MurG MurG is an N- 55.8 40 0.00088 29.3 6.5 16 180-195 310-325 (350)
25 TIGR03646 YtoQ_fam YtoQ family 54.8 22 0.00047 28.6 4.1 74 87-189 66-140 (144)
26 COG1819 Glycosyl transferases, 54.6 1.3E+02 0.0027 28.0 9.9 125 28-193 238-367 (406)
27 cd03786 GT1_UDP-GlcNAc_2-Epime 54.2 53 0.0012 28.7 7.1 60 106-195 279-338 (363)
28 PRK00025 lpxB lipid-A-disaccha 54.1 15 0.00032 32.7 3.5 19 178-196 325-343 (380)
29 PRK02645 ppnK inorganic polyph 52.8 21 0.00044 32.0 4.2 50 106-165 59-117 (305)
30 cd01171 YXKO-related B.subtili 52.4 54 0.0012 27.8 6.6 35 106-148 79-113 (254)
31 PF13607 Succ_CoA_lig: Succiny 52.3 81 0.0018 24.9 7.1 37 104-147 54-90 (138)
32 PF01182 Glucosamine_iso: Gluc 51.5 49 0.0011 27.4 6.1 41 106-150 22-62 (199)
33 TIGR01426 MGT glycosyltransfer 50.3 25 0.00053 31.7 4.4 67 106-195 293-360 (392)
34 CHL00200 trpA tryptophan synth 49.9 60 0.0013 28.5 6.6 40 117-164 75-119 (263)
35 PF01256 Carb_kinase: Carbohyd 49.5 46 0.001 28.8 5.8 128 30-191 2-134 (242)
36 PLN02591 tryptophan synthase 48.6 52 0.0011 28.7 6.0 40 117-164 62-106 (250)
37 KOG0832 Mitochondrial/chloropl 47.6 50 0.0011 28.9 5.5 44 7-55 92-136 (251)
38 COG3967 DltE Short-chain dehyd 47.0 25 0.00054 30.6 3.6 29 27-55 5-33 (245)
39 COG3660 Predicted nucleoside-d 46.8 39 0.00084 30.5 4.8 50 106-168 246-296 (329)
40 PF06258 Mito_fiss_Elm1: Mitoc 46.4 58 0.0012 29.3 6.0 71 106-191 230-308 (311)
41 PRK00861 putative lipid kinase 44.7 47 0.001 29.1 5.1 44 11-60 46-89 (300)
42 PF03492 Methyltransf_7: SAM d 44.1 23 0.00051 32.1 3.2 43 148-190 198-242 (334)
43 KOG1584 Sulfotransferase [Gene 43.1 15 0.00032 33.2 1.7 68 112-200 151-221 (297)
44 cd06259 YdcF-like YdcF-like. Y 42.4 1E+02 0.0023 23.6 6.4 11 106-116 1-11 (150)
45 COG0063 Predicted sugar kinase 41.7 2.4E+02 0.0052 25.2 9.1 98 26-144 32-135 (284)
46 COG3613 Nucleoside 2-deoxyribo 41.2 1.3E+02 0.0027 25.1 6.7 45 106-160 70-122 (172)
47 PF04230 PS_pyruv_trans: Polys 39.7 66 0.0014 26.2 5.1 38 106-146 65-107 (286)
48 KOG4175 Tryptophan synthase al 39.7 97 0.0021 26.9 6.0 33 117-156 78-110 (268)
49 PRK13054 lipid kinase; Reviewe 39.3 72 0.0016 28.0 5.5 45 11-60 45-92 (300)
50 PF00106 adh_short: short chai 39.2 50 0.0011 25.3 4.1 30 29-58 2-31 (167)
51 PRK13055 putative lipid kinase 38.9 69 0.0015 28.7 5.4 45 11-60 48-93 (334)
52 PRK13337 putative lipid kinase 38.8 77 0.0017 27.9 5.6 45 11-60 46-91 (304)
53 PRK05854 short chain dehydroge 38.7 48 0.001 29.1 4.3 32 27-58 14-45 (313)
54 COG4671 Predicted glycosyl tra 38.5 1.2E+02 0.0026 28.4 6.8 83 86-196 284-367 (400)
55 smart00046 DAGKc Diacylglycero 38.2 31 0.00068 26.3 2.7 42 108-154 52-93 (124)
56 PF06908 DUF1273: Protein of u 38.1 2.3E+02 0.005 23.4 12.4 100 3-112 19-137 (177)
57 TIGR00060 L18_bact ribosomal p 37.9 96 0.0021 24.0 5.3 42 9-51 66-111 (114)
58 cd00432 Ribosomal_L18_L5e Ribo 37.8 1.3E+02 0.0027 22.3 5.9 43 8-51 56-102 (103)
59 TIGR03702 lip_kinase_YegS lipi 37.5 78 0.0017 27.7 5.4 45 11-60 41-88 (293)
60 PRK04155 chaperone protein Hch 37.5 37 0.0008 30.3 3.3 33 107-145 149-187 (287)
61 cd04180 UGPase_euk_like Eukary 36.9 82 0.0018 27.6 5.4 66 107-191 2-75 (266)
62 TIGR03590 PseG pseudaminic aci 36.4 59 0.0013 28.3 4.5 26 106-146 243-268 (279)
63 PLN02668 indole-3-acetate carb 36.3 47 0.001 31.1 3.9 41 150-190 255-298 (386)
64 COG0159 TrpA Tryptophan syntha 35.7 1.2E+02 0.0027 26.9 6.3 53 117-183 77-134 (265)
65 KOG1718 Dual specificity phosp 35.5 39 0.00085 28.4 2.9 32 121-160 124-155 (198)
66 PF11834 DUF3354: Domain of un 35.0 73 0.0016 22.4 3.9 33 106-148 19-51 (69)
67 cd03147 GATase1_Ydr533c_like T 34.6 31 0.00068 29.6 2.4 32 108-145 97-134 (231)
68 TIGR00196 yjeF_cterm yjeF C-te 33.9 2.6E+02 0.0056 24.0 8.1 34 106-147 94-127 (272)
69 PF01965 DJ-1_PfpI: DJ-1/PfpI 33.7 49 0.0011 25.7 3.2 36 108-146 40-79 (147)
70 PF10087 DUF2325: Uncharacteri 33.6 1.8E+02 0.004 21.0 8.9 94 30-159 2-95 (97)
71 TIGR03702 lip_kinase_YegS lipi 33.2 72 0.0016 27.9 4.5 34 106-145 54-87 (293)
72 PRK07102 short chain dehydroge 33.0 60 0.0013 26.7 3.8 30 29-58 3-32 (243)
73 CHL00139 rpl18 ribosomal prote 33.0 1.3E+02 0.0029 22.9 5.4 43 8-51 60-106 (109)
74 TIGR01832 kduD 2-deoxy-D-gluco 32.9 71 0.0015 26.3 4.2 32 27-58 5-36 (248)
75 PRK13057 putative lipid kinase 32.7 57 0.0012 28.4 3.8 55 108-190 53-107 (287)
76 PTZ00378 hypothetical protein; 32.3 74 0.0016 30.9 4.6 48 81-130 374-422 (518)
77 PRK08813 threonine dehydratase 32.1 1.4E+02 0.0029 27.4 6.2 51 5-60 161-213 (349)
78 KOG3349 Predicted glycosyltran 31.8 90 0.0019 25.8 4.4 14 106-120 82-95 (170)
79 PRK11780 isoprenoid biosynthes 31.8 65 0.0014 27.4 3.8 12 106-118 87-98 (217)
80 cd03148 GATase1_EcHsp31_like T 31.2 42 0.00092 28.8 2.6 14 108-121 99-112 (232)
81 PF00113 Enolase_C: Enolase, C 30.9 47 0.001 29.8 2.9 49 80-130 178-226 (295)
82 PF00290 Trp_syntA: Tryptophan 30.8 92 0.002 27.4 4.7 41 117-164 70-115 (259)
83 TIGR00236 wecB UDP-N-acetylglu 30.7 1.5E+02 0.0032 26.3 6.2 20 176-195 316-335 (365)
84 PRK07677 short chain dehydroge 30.7 82 0.0018 26.1 4.3 30 29-58 3-32 (252)
85 PRK06180 short chain dehydroge 30.0 79 0.0017 26.8 4.1 31 28-58 5-35 (277)
86 cd07025 Peptidase_S66 LD-Carbo 28.8 87 0.0019 27.5 4.2 44 84-131 45-88 (282)
87 PF00890 FAD_binding_2: FAD bi 28.5 53 0.0012 29.7 2.9 28 29-58 2-29 (417)
88 PF00861 Ribosomal_L18p: Ribos 28.5 2.1E+02 0.0045 21.9 5.9 45 7-52 69-117 (119)
89 cd03812 GT1_CapH_like This fam 28.2 2.2E+02 0.0049 24.2 6.7 71 106-201 268-338 (358)
90 COG0028 IlvB Thiamine pyrophos 27.5 1.7E+02 0.0036 28.5 6.3 20 176-195 502-521 (550)
91 PRK05593 rplR 50S ribosomal pr 27.4 1.7E+02 0.0036 22.6 5.1 41 10-51 70-114 (117)
92 PRK13111 trpA tryptophan synth 27.4 2.3E+02 0.005 24.7 6.6 42 117-165 72-118 (258)
93 PRK09291 short chain dehydroge 27.3 99 0.0021 25.5 4.2 30 29-58 4-33 (257)
94 KOG3974 Predicted sugar kinase 27.2 4E+02 0.0086 24.0 7.9 104 25-150 29-143 (306)
95 PRK08217 fabG 3-ketoacyl-(acyl 26.6 1.1E+02 0.0023 25.1 4.2 32 27-58 5-36 (253)
96 PRK12446 undecaprenyldiphospho 26.5 3.5E+02 0.0076 24.3 7.9 68 106-193 254-324 (352)
97 PRK13054 lipid kinase; Reviewe 25.9 1.2E+02 0.0026 26.5 4.7 34 106-145 58-91 (300)
98 cd08189 Fe-ADH5 Iron-containin 25.6 2.6E+02 0.0057 25.4 7.0 20 105-126 84-103 (374)
99 PRK10494 hypothetical protein; 25.6 1.3E+02 0.0028 26.2 4.7 10 106-115 80-89 (259)
100 cd06424 UGGPase UGGPase cataly 25.6 2.1E+02 0.0045 26.0 6.1 11 107-117 2-12 (315)
101 cd03133 GATase1_ES1 Type 1 glu 25.5 1.3E+02 0.0027 25.7 4.5 12 106-118 84-95 (213)
102 PRK07062 short chain dehydroge 25.2 1.2E+02 0.0026 25.3 4.3 32 27-58 8-39 (265)
103 PF00781 DAGK_cat: Diacylglyce 25.2 1.5E+02 0.0032 22.4 4.5 31 30-60 57-90 (130)
104 PRK15494 era GTPase Era; Provi 25.1 3E+02 0.0066 24.7 7.2 26 179-206 202-227 (339)
105 PF00627 UBA: UBA/TS-N domain; 24.7 32 0.0007 20.6 0.5 31 157-188 6-37 (37)
106 PF03501 S10_plectin: Plectin/ 24.7 90 0.0019 23.5 3.0 44 152-197 39-83 (95)
107 cd03794 GT1_wbuB_like This fam 24.1 1.8E+02 0.0039 24.4 5.3 67 106-196 296-367 (394)
108 PRK07814 short chain dehydroge 24.1 1.3E+02 0.0027 25.3 4.3 32 27-58 10-41 (263)
109 PRK11914 diacylglycerol kinase 24.1 1.5E+02 0.0033 25.9 5.0 44 11-60 53-96 (306)
110 PRK06182 short chain dehydroge 24.1 1.3E+02 0.0027 25.4 4.3 31 28-58 4-34 (273)
111 PRK08264 short chain dehydroge 24.1 1.3E+02 0.0028 24.5 4.3 31 28-58 7-38 (238)
112 PRK12481 2-deoxy-D-gluconate 3 24.0 1.2E+02 0.0027 25.3 4.2 31 27-57 8-38 (251)
113 PRK08589 short chain dehydroge 23.6 1.3E+02 0.0027 25.5 4.2 32 27-58 6-37 (272)
114 cd01170 THZ_kinase 4-methyl-5- 23.6 4.6E+02 0.01 22.3 9.0 30 23-53 4-33 (242)
115 PRK08339 short chain dehydroge 23.5 1.3E+02 0.0029 25.3 4.3 32 27-58 8-39 (263)
116 PRK12367 short chain dehydroge 23.4 1.5E+02 0.0032 25.1 4.6 31 28-58 15-45 (245)
117 TIGR00502 nagB glucosamine-6-p 23.2 3.5E+02 0.0075 23.3 6.9 42 106-150 34-75 (259)
118 TIGR00661 MJ1255 conserved hyp 23.2 5.1E+02 0.011 22.6 11.4 45 106-165 249-293 (321)
119 PRK07035 short chain dehydroge 23.1 1.3E+02 0.0029 24.8 4.2 32 27-58 8-39 (252)
120 PRK13059 putative lipid kinase 22.9 1.2E+02 0.0027 26.5 4.1 42 108-157 59-100 (295)
121 cd00411 Asparaginase Asparagin 22.9 2.2E+02 0.0047 25.7 5.7 48 105-159 79-131 (323)
122 KOG1350 F0F1-type ATP synthase 22.8 88 0.0019 29.1 3.1 32 24-55 189-224 (521)
123 COG2515 Acd 1-aminocyclopropan 22.5 2.5E+02 0.0053 25.7 5.9 50 4-58 46-96 (323)
124 PRK08569 rpl18p 50S ribosomal 22.4 2.2E+02 0.0049 24.1 5.3 47 6-52 77-128 (193)
125 PRK09072 short chain dehydroge 22.4 1.4E+02 0.0031 24.9 4.3 31 28-58 6-36 (263)
126 TIGR00215 lpxB lipid-A-disacch 22.3 2.1E+02 0.0046 26.0 5.7 19 177-195 330-348 (385)
127 PRK08993 2-deoxy-D-gluconate 3 22.3 1.4E+02 0.003 24.8 4.2 32 27-58 10-41 (253)
128 TIGR03405 Phn_Fe-ADH phosphona 22.2 2E+02 0.0044 26.0 5.5 20 105-126 81-100 (355)
129 cd03784 GT1_Gtf_like This fami 22.2 5.6E+02 0.012 22.7 12.5 65 106-192 306-370 (401)
130 PRK08303 short chain dehydroge 22.1 1.3E+02 0.0029 26.3 4.2 31 27-57 8-38 (305)
131 TIGR01364 serC_1 phosphoserine 21.9 2.1E+02 0.0046 25.8 5.5 27 29-55 58-84 (349)
132 cd03816 GT1_ALG1_like This fam 21.9 5.2E+02 0.011 23.5 8.2 64 105-194 315-381 (415)
133 PRK12829 short chain dehydroge 21.6 1.5E+02 0.0033 24.4 4.3 32 27-58 11-42 (264)
134 PRK03708 ppnK inorganic polyph 21.6 1.4E+02 0.003 26.4 4.1 30 106-146 59-88 (277)
135 PRK05693 short chain dehydroge 21.6 1.3E+02 0.0029 25.3 3.9 30 29-58 3-32 (274)
136 cd03795 GT1_like_4 This family 21.5 2E+02 0.0044 24.3 5.2 66 106-196 265-334 (357)
137 PRK07313 phosphopantothenoylcy 21.5 1.4E+02 0.003 24.7 3.9 85 105-193 78-179 (182)
138 PRK08274 tricarballylate dehyd 21.4 70 0.0015 29.7 2.4 27 28-56 6-32 (466)
139 KOG1201 Hydroxysteroid 17-beta 21.4 1.2E+02 0.0027 27.4 3.7 31 24-54 35-65 (300)
140 PRK07424 bifunctional sterol d 21.3 1.1E+02 0.0023 28.6 3.5 36 23-58 174-209 (406)
141 PRK12745 3-ketoacyl-(acyl-carr 21.2 1.4E+02 0.0031 24.5 4.0 30 29-58 4-33 (256)
142 PRK08226 short chain dehydroge 21.2 1.5E+02 0.0033 24.6 4.2 31 28-58 7-37 (263)
143 PRK06914 short chain dehydroge 21.0 1.5E+02 0.0033 24.9 4.2 30 28-57 4-33 (280)
144 PRK06114 short chain dehydroge 20.9 1.6E+02 0.0034 24.5 4.2 33 26-58 7-39 (254)
145 COG1454 EutG Alcohol dehydroge 20.8 4.1E+02 0.0089 24.8 7.2 41 12-58 18-63 (377)
146 TIGR00262 trpA tryptophan synt 20.8 3.6E+02 0.0078 23.4 6.6 42 117-165 70-116 (256)
147 PF05159 Capsule_synth: Capsul 20.8 93 0.002 26.6 2.8 31 106-152 201-231 (269)
148 PRK05993 short chain dehydroge 20.7 1.5E+02 0.0032 25.1 4.1 31 28-58 5-35 (277)
149 cd03822 GT1_ecORF704_like This 20.7 2E+02 0.0042 24.3 4.8 17 178-194 318-334 (366)
150 cd06313 PBP1_ABC_sugar_binding 20.6 4.7E+02 0.01 21.8 7.1 33 105-146 56-88 (272)
151 PRK05717 oxidoreductase; Valid 20.6 1.6E+02 0.0034 24.4 4.2 32 26-57 9-40 (255)
152 PRK15454 ethanol dehydrogenase 20.6 5.8E+02 0.013 23.5 8.2 11 105-115 107-117 (395)
153 PRK07063 short chain dehydroge 20.5 1.6E+02 0.0036 24.4 4.3 32 27-58 7-38 (260)
154 cd04193 UDPGlcNAc_PPase UDPGlc 20.4 2.4E+02 0.0052 25.5 5.5 41 106-160 16-59 (323)
155 PRK09922 UDP-D-galactose:(gluc 20.3 5.5E+02 0.012 22.5 7.8 66 106-196 259-326 (359)
156 PHA03359 UL17 tegument protein 20.3 53 0.0012 32.9 1.3 22 106-127 649-670 (686)
157 smart00516 SEC14 Domain in hom 20.1 2.8E+02 0.0061 20.9 5.3 65 117-189 79-145 (158)
158 TIGR03325 BphB_TodD cis-2,3-di 20.1 1.7E+02 0.0036 24.5 4.2 32 27-58 5-36 (262)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=7.9e-47 Score=313.13 Aligned_cols=164 Identities=26% Similarity=0.411 Sum_probs=144.2
Q ss_pred CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCcccee
Q 028080 4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETYL 81 (214)
Q Consensus 4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~i 81 (214)
.+|.|. .|++||++ ||++|..+|||||.+|+|+|+++||+++||.|+||+|.. ...+ .+|++++ .++
T Consensus 13 ~~~~~~~~A~~lG~~-----la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~----~~~~~~~--~~i 81 (178)
T TIGR00730 13 GNAAYKELAAELGAY-----LAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGE----VVHQNLT--ELI 81 (178)
T ss_pred CCcHHHHHHHHHHHH-----HHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhh----ccCCCCC--ceE
Confidence 456665 58999999 999965566666669999999999999999999999853 2222 3599997 567
Q ss_pred ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080 82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE 161 (214)
Q Consensus 82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~ 161 (214)
.+++|++||..|++.| ||||+||||+|||+|++++|+|.|++.+ +||++++|++|||+++++|+++++
T Consensus 82 ~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~~~~l~~~l~~~~ 149 (178)
T TIGR00730 82 EVNGMHERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGHFDGLVEWLKYSI 149 (178)
T ss_pred EECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcchHHHHHHHHHHHH
Confidence 8899999999999987 9999999999999999999999999874 799999999999999999999999
Q ss_pred HcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080 162 DWGTVAKDEVASLWKICDSNSEALSYLAEF 191 (214)
Q Consensus 162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~ 191 (214)
++||+++++ .+.+.+++|++|++++|++|
T Consensus 150 ~~gfi~~~~-~~~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 150 QEGFISESH-LKLIHVVSRPDELIEQVQNY 178 (178)
T ss_pred HCCCCCHHH-cCcEEEcCCHHHHHHHHHhC
Confidence 999999975 58899999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=7.7e-40 Score=276.70 Aligned_cols=167 Identities=32% Similarity=0.459 Sum_probs=147.0
Q ss_pred CcH-HHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080 4 DHP-HYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 82 (214)
Q Consensus 4 ~~~-~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~ 82 (214)
.++ .|+.|++||++ ||++| ++|||||++|+|||+|+||+++||.||||+|..... .. ++|++++ .+++
T Consensus 28 ~~~~~~~~a~~lg~~-----la~~g-~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~-~e--~~~~~~~--~l~~ 96 (205)
T COG1611 28 EPEEYYELARELGRE-----LAKRG-LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHE-QE--PPNYEVI--ELIT 96 (205)
T ss_pred CCHHHHHHHHHHHHH-----HHhCC-cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchh-hc--cCccccc--eeee
Confidence 444 67789999999 99994 999999999999999999999999999999966432 11 2455554 5788
Q ss_pred cCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHH-hHH
Q 028080 83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCE 161 (214)
Q Consensus 83 ~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~-~~~ 161 (214)
+.+|++||..|.++| ||||++|||+||++|+|++|+|.|++.+. ..+|+++++.++||+++.++++ +++
T Consensus 97 ~~~~~~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~~~~~~~~~d~~~i 166 (205)
T COG1611 97 GMDFAERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGFWEPLLEFLDPHLI 166 (205)
T ss_pred cCCHHHHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHHHHHHHHHhCHHHH
Confidence 899999999999997 99999999999999999999999998863 2678888999999999999999 899
Q ss_pred HcCCCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080 162 DWGTVAKDEVASLWKICDSNSEALSYLAEFY 192 (214)
Q Consensus 162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~ 192 (214)
.+++++++ ..+++++++|++++++.+.+++
T Consensus 167 ~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 196 (205)
T COG1611 167 VEGLISEA-DRELLIVVDDAEEAIDAILKYL 196 (205)
T ss_pred HhhcCChh-hhhheeeecCHHHHHHHHHHhc
Confidence 99999986 5688999999999999999985
No 3
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=3.1e-38 Score=250.10 Aligned_cols=132 Identities=39% Similarity=0.604 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCccc-ccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCH
Q 028080 40 MDAVTKGAMQAGKPVGGFKVGKEAG-EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 118 (214)
Q Consensus 40 M~ava~ga~~~gG~viGIi~~~e~~-e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTL 118 (214)
|||+|+||+++||.|+||+|..... + +.+|++++ .++++++|++||..|++.| ||||+||||+|||
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~---~~~~~~~~--~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl 67 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFE---EPPNPYVT--ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTL 67 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTT---TTCCTTSS--EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHH
T ss_pred CcHHHHHHHHcCCeEEEEecCcccccc---ccCCcccC--ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchH
Confidence 9999999999999999999864322 2 23699997 5788899999999999997 9999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHH
Q 028080 119 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 188 (214)
Q Consensus 119 eEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l 188 (214)
+|+|++|+|.|++.+ .++|+||+|.+|||+++++++++++++||+++++. +++.+++|++|++++|
T Consensus 68 ~El~~~~~~~~l~~~---~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 68 DELFEALTLMQLGRH---NKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHTTSS---TS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHhhccc---cCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence 999999999999876 34599999999999999999999999999999754 7999999999999975
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.4e-35 Score=241.84 Aligned_cols=146 Identities=26% Similarity=0.304 Sum_probs=121.7
Q ss_pred CcHHHHH-HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080 4 DHPHYLQ-SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 82 (214)
Q Consensus 4 ~~~~y~~-A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~ 82 (214)
.+|.|.+ |++||++ ||++| +.|++||+.|+|++++++|+++||.||||+|.... ..|++++ ..+.
T Consensus 12 ~~~~~~~~A~~lg~~-----La~~g-~~lv~Gg~~GlM~a~a~ga~~~gg~viGVlp~~l~------~~~~~~~--~~i~ 77 (159)
T TIGR00725 12 KSEELYEIAYRLGKE-----LAKKG-HILINGGRTGVMEAVSKGAREAGGLVVGILPDEDF------AGNPYLT--IKVK 77 (159)
T ss_pred CChHHHHHHHHHHHH-----HHHCC-CEEEcCCchhHHHHHHHHHHHCCCeEEEECChhhc------cCCCCce--EEEE
Confidence 3667775 7999999 99995 67888999999999999999999999999985321 2488876 4556
Q ss_pred cCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHH
Q 028080 83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED 162 (214)
Q Consensus 83 ~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~ 162 (214)
+..+++||++|+++| ||||++|||+|||+|+|++|++ +||++++|.+|||+++++++ +.
T Consensus 78 ~~~~~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~~----------~kpv~~l~~~g~~~~~l~~~--~~- 136 (159)
T TIGR00725 78 TGMNFARNFILVRSA--------DVVVSVGGGYGTAIEILGAYAL----------GGPVVVLRGTGGWTDRLSQV--LI- 136 (159)
T ss_pred CCCcchHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHHc----------CCCEEEEECCCcchHHHHHH--Hh-
Confidence 566689999999997 9999999999999999999983 68999999999999998864 44
Q ss_pred cCCCChhhhcccEEEeCCHHHHHHHH
Q 028080 163 WGTVAKDEVASLWKICDSNSEALSYL 188 (214)
Q Consensus 163 ~gfi~~~~~~~~i~~~~s~ee~~~~l 188 (214)
+++..+ +.+.+++|+||+++.+
T Consensus 137 ~~~~~~----~~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 137 EGVYLD----ERVIVEITPAEAVKLA 158 (159)
T ss_pred cccccc----ceeEecCCHHHHHHhh
Confidence 444443 2588999999999864
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.96 E-value=2.7e-08 Score=85.24 Aligned_cols=142 Identities=16% Similarity=0.076 Sum_probs=98.7
Q ss_pred HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccc-------cccC---CCCCCC
Q 028080 10 QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS---NFHPYL 75 (214)
Q Consensus 10 ~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e-------~~~~---~~n~~l 75 (214)
.|++|++. |+++ ++.|++|+.-|++.++.++|+++||.+|+|++. +. +.+ .... -..+|-
T Consensus 62 ~a~~l~~~-----l~~~-g~~IVSG~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p 135 (220)
T TIGR00732 62 WTRKLAEE-----LAKN-GVTIVSGLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYP 135 (220)
T ss_pred HHHHHHHH-----HHhC-CCEEEcCchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecC
Confidence 37899999 9998 688999999999999999999999999999863 21 110 0000 011222
Q ss_pred CccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHH
Q 028080 76 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL 153 (214)
Q Consensus 76 ~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l 153 (214)
+. ....-..|..|+.++..+| |++|++-.+ .||+.+.-.++.+ +|||+.+-. ..+++.
T Consensus 136 ~~-~~~~~~~f~~RNriia~ls--------~~vivve~~~~sGtl~ta~~A~~~----------gr~v~~~pg-~~~~~~ 195 (220)
T TIGR00732 136 PD-TKPIKYNFPKRNRIISGLS--------RAVLVVEAPLKSGALITARYALEQ----------GREVFAYPG-DLNSPE 195 (220)
T ss_pred CC-CCCCcccHHHHHHHHHHhc--------CEEEEEECCCCCchHHHHHHHHHh----------CCcEEEEcC-CCCCcc
Confidence 21 1111245789999999987 999999987 7999887655553 689998843 455555
Q ss_pred HHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHH
Q 028080 154 LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 187 (214)
Q Consensus 154 ~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~ 187 (214)
-+--..++++|. ..+.+++|+++.
T Consensus 196 ~~G~~~Li~~GA----------~~i~~~~d~~~~ 219 (220)
T TIGR00732 196 SDGCHKLIEQGA----------ALITSAKDILET 219 (220)
T ss_pred chHHHHHHHCCC----------EEECCHHHHHHh
Confidence 555566776662 245677777664
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=98.06 E-value=6.1e-05 Score=64.17 Aligned_cols=128 Identities=21% Similarity=0.185 Sum_probs=72.9
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---cccc-------ccC---CCCCCCC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLP 76 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e~-------~~~---~~n~~l~ 76 (214)
|++|++. |+++ ++.|++|+-.|+-.++.++|+++||.+|.|++. ++ |.+. ... -.++|.+
T Consensus 63 a~~l~~~-----l~~~-g~~vvSGlA~GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p 136 (212)
T PF02481_consen 63 AKKLARE-----LAKA-GIVVVSGLAKGIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPP 136 (212)
T ss_dssp HHHHHHH-----HHHH-T-EEEE---TTHHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-T
T ss_pred HHHHHHH-----HhhC-CEEEEcCCCCCHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCC
Confidence 6899999 9998 789999999999999999999999999999862 21 1110 000 0122222
Q ss_pred ccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeC--CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080 77 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL 154 (214)
Q Consensus 77 ~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP--GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~ 154 (214)
+.......|.+|+.++..+| |++|+.- =..||+.-+-.++.+ +|||+.+. ...+++..
T Consensus 137 -~~~~~~~~f~~RNRiiaaLs--------~~~vvvea~~~sGt~~ta~~A~~~----------gr~v~~vp-~~~~~~~~ 196 (212)
T PF02481_consen 137 -GTKPSRWRFPERNRIIAALS--------DAVVVVEAGEKSGTLHTARFALEQ----------GRPVFAVP-GPIDDPNS 196 (212)
T ss_dssp -T----TTHHHHHHHHHHHH---------S-EEE----TT-THHHHHHHHHHH----------T--EEE-----TT-GGG
T ss_pred -CCCcccccChHHHHHHHHhC--------CeEEEEecCCCChHHHHHHHHHHc----------CCeEEEEe-CCCCCccc
Confidence 11223356889999999987 8888875 456788776655544 57998874 45677666
Q ss_pred HHHHhHHHcC
Q 028080 155 DFLGDCEDWG 164 (214)
Q Consensus 155 ~~l~~~~~~g 164 (214)
+.-..++++|
T Consensus 197 ~G~~~Li~~G 206 (212)
T PF02481_consen 197 EGNNELIKEG 206 (212)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 6666777776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=97.25 E-value=0.012 Score=54.43 Aligned_cols=144 Identities=16% Similarity=0.052 Sum_probs=95.6
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEec-CCc---ccc-------ccc---CCCCCCCC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV-GKE---AGE-------WTA---SNFHPYLP 76 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~-~~e---~~e-------~~~---~~~n~~l~ 76 (214)
++++++. ||++ ++.|++|+--|+=.++.++|+++||.+|+|+. .+. |.+ ... --.++|-+
T Consensus 126 ~~~l~~~-----la~~-g~~IVSGlA~GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~ 199 (374)
T PRK10736 126 GRLFCEE-----LAKN-GLTITSGLARGIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPL 199 (374)
T ss_pred HHHHHHH-----HHHC-CCEEECcchhhHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCC
Confidence 6899999 9998 68899999999999999999999999999974 111 110 000 00112211
Q ss_pred ccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeC--CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080 77 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL 154 (214)
Q Consensus 77 ~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP--GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~ 154 (214)
.......+|..|+.++.-+| +++|+.- =-.|||.=.-.++. .+|+|+.+- ...+++.-
T Consensus 200 -~~~p~~~~Fp~RNRIIagLS--------~~viVvEA~~kSGsliTA~~Al~----------~gR~VfavP-G~i~~~~s 259 (374)
T PRK10736 200 -DTPPLAANFPRRNRIISGLS--------KGVLVVEAALRSGSLVTARCALE----------QGRDVFALP-GPIGNPGS 259 (374)
T ss_pred -CCCCChhhhhHhhhHHHHhC--------CeEEEEEeCCCCchHHHHHHHHH----------hCCeEEEEc-CCCCCccc
Confidence 00111257899999999887 8888775 34567654433333 268998873 34556555
Q ss_pred HHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHh
Q 028080 155 DFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 190 (214)
Q Consensus 155 ~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~ 190 (214)
+-..+++++|. ..+.+++|+++.+..
T Consensus 260 ~G~n~LI~~GA----------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 260 EGPHWLIKQGA----------YLVTSPEDILENLQF 285 (374)
T ss_pred hhHHHHHHCCC----------EEeCCHHHHHHHhhh
Confidence 55566766551 357788999888853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=96.30 E-value=0.11 Score=47.63 Aligned_cols=145 Identities=19% Similarity=0.137 Sum_probs=92.0
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccc-------cccC--CCCCCCCc
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS--NFHPYLPL 77 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e-------~~~~--~~n~~l~~ 77 (214)
++.|++. |+++ ++.|++|+-.|+=.++.++|++++|.+|+|+.. ++ |.+ .... -.++|.+.
T Consensus 130 ~~~~a~~-----L~~~-g~~IvSGlA~GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~ 203 (350)
T COG0758 130 TRDLAEY-----LAQN-GITIVSGLARGIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPD 203 (350)
T ss_pred HHHHHHH-----HHhC-CeEEEecCcceecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCC
Confidence 6899999 9998 688999999999999999999999999999741 11 000 0000 01234331
Q ss_pred cceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH
Q 028080 78 ETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD 155 (214)
Q Consensus 78 e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~ 155 (214)
......+|..|+++..-+| +++|+.-.+ .|+|-=.-.++.. .+.|+.+-. ...++.-+
T Consensus 204 -~~p~~~~Fp~RNRiIagLS--------~gvlVvEA~~kSGSLiTA~~Aleq----------gR~VfavPg-~~~~~~s~ 263 (350)
T COG0758 204 -TEPNKGNFPRRNRLIAGLS--------DGVLVVEAGLKSGSLITAKYALEQ----------GRDVFAVPG-SIDNPRSE 263 (350)
T ss_pred -CCcccccchHHHHHHHHhc--------CceEEEecCcccccHHHHHHHHHc----------CCeeEEcCC-Cccccccc
Confidence 1222357899999998887 988888665 5777655444443 456665533 33444333
Q ss_pred HHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080 156 FLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 191 (214)
Q Consensus 156 ~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~ 191 (214)
--..++++|- ..+.+.+++++.+...
T Consensus 264 G~~~LI~~GA----------~lv~~~~dil~~l~~~ 289 (350)
T COG0758 264 GCNKLIKEGA----------KLVTSAEDILEELNAL 289 (350)
T ss_pred chHHHHHccc----------hhcccHHHHHHHhhhh
Confidence 3344566562 1344556666666543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=93.60 E-value=1 Score=36.40 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=49.5
Q ss_pred EEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEEE
Q 028080 31 TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVA 110 (214)
Q Consensus 31 V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~ 110 (214)
|++||-.|+=.|+-+.|+++|-..-|-.|.--..|+.. -+..|-- ......+...|....+.-| |+-++
T Consensus 1 IiSGGQTGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~-ip~~Y~L--~E~~~~~Y~~RT~~NV~Ds--------DgTlI 69 (145)
T PF12694_consen 1 IISGGQTGVDRAALDAAIAHGIPHGGWCPKGRRAEDGP-IPARYPL--QETPSSGYRQRTEWNVRDS--------DGTLI 69 (145)
T ss_dssp EE----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS---TTS----EE-SS--HHHHHHHHHHTS--------SEEEE
T ss_pred CccCccccHHHHHHHHHHHcCCCccCcCCCCcccccCc-CCccccc--eecCCCCHHHHHHhhhhhc--------CeEEE
Confidence 68999999999999999999988888887422222211 1233321 1234467789999988876 99888
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080 111 LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 111 lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
|-=|. |.- -..+|..-=.+ +.||+.+++.
T Consensus 70 ~~~g~--l~G-Gt~lT~~~a~~----~~KP~l~i~~ 98 (145)
T PF12694_consen 70 FTRGE--LTG-GTALTVEFARK----HGKPCLHIDL 98 (145)
T ss_dssp EESSS----H-HHHHHHHHHHH----TT--EEEETS
T ss_pred EecCC--CCc-HHHHHHHHHHH----hCCCEEEEec
Confidence 87443 221 01222221122 4799998865
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=92.02 E-value=0.26 Score=37.22 Aligned_cols=44 Identities=27% Similarity=0.212 Sum_probs=34.4
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCC----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC
Q 028080 86 FSARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD 147 (214)
Q Consensus 86 m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~ 147 (214)
..+|....++.| |++|+...+ .||.-|+..+..+ +|||+++..+
T Consensus 51 i~~~d~~~i~~~--------D~via~l~~~~~d~Gt~~ElG~A~al----------gkpv~~~~~d 98 (113)
T PF05014_consen 51 IFERDLEGIREC--------DIVIANLDGFRPDSGTAFELGYAYAL----------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHS--------SEEEEEECSSS--HHHHHHHHHHHHT----------TSEEEEEECC
T ss_pred HHHHHHHHHHHC--------CEEEEECCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC
Confidence 456666666665 999998877 9999999877664 6899999764
No 11
>PRK10565 putative carbohydrate kinase; Provisional
Probab=87.90 E-value=4 Score=39.18 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 148 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g 148 (214)
|++++=|| .|+-++..+++... .. .++|+ +++.++
T Consensus 322 ~a~viGpG-lg~~~~~~~~~~~~--~~----~~~P~-VLDAda 356 (508)
T PRK10565 322 DVVVIGPG-LGQQEWGKKALQKV--EN----FRKPM-LWDADA 356 (508)
T ss_pred CEEEEeCC-CCCCHHHHHHHHHH--Hh----cCCCE-EEEchH
Confidence 98888886 78866655444322 11 36787 556655
No 12
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=83.25 E-value=21 Score=30.88 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=39.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEE-eCCHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNSEA 184 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~s~ee~ 184 (214)
|++|.- ||.+|+.|. +++ .||++++-..++++.... -+.+.+.|.... +.. .-+++.+
T Consensus 252 d~vIs~-~G~~t~~Ea---~~~----------g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~------~~~~~~~~~~l 310 (318)
T PF13528_consen 252 DLVISK-GGYTTISEA---LAL----------GKPALVIPRPGQDEQEYN-ARKLEELGLGIV------LSQEDLTPERL 310 (318)
T ss_pred CEEEEC-CCHHHHHHH---HHc----------CCCEEEEeCCCCchHHHH-HHHHHHCCCeEE------cccccCCHHHH
Confidence 866655 889998885 333 689999877666766543 133444443211 111 1267888
Q ss_pred HHHHHh
Q 028080 185 LSYLAE 190 (214)
Q Consensus 185 ~~~l~~ 190 (214)
.++|++
T Consensus 311 ~~~l~~ 316 (318)
T PF13528_consen 311 AEFLER 316 (318)
T ss_pred HHHHhc
Confidence 887765
No 13
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.78 E-value=5.4 Score=42.39 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHh-HHHcCCCCh
Q 028080 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAK 168 (214)
Q Consensus 107 a~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~-~~~~gfi~~ 168 (214)
.++++.||.+|+.=+.+..+.. ++.|+++....|==.+++++... ..+.|+++.
T Consensus 271 vc~v~eGg~nti~~I~~~v~~~--------~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~ 325 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTDK--------PPIPVVVCAGSGRAADILAFAHEEHGAPGILSD 325 (1381)
T ss_pred EEEEecCCchHHHHHHHHhccC--------CCCceEEEcCCchHHHHHHHHHHhhcCCCcccH
Confidence 6889999999987766554431 57899999888888888888765 455566554
No 14
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=73.81 E-value=7.1 Score=34.85 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC
Q 028080 10 QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60 (214)
Q Consensus 10 ~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~ 60 (214)
.|.++.+. ++..+.-.|+.+||-|....++.|....+...+||+|.
T Consensus 46 ~a~~~a~~-----a~~~~~D~via~GGDGTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 46 DAIEIARE-----AAVEGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred cHHHHHHH-----HHhcCCCEEEEecCcchHHHHHHHHhcCCCCceEEecC
Confidence 47788888 88777778999999999999999999999888999984
No 15
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=70.33 E-value=25 Score=31.37 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=37.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|++|.-+|| .|+.| +++. .+|+|+++..+.+.. ...+.+.+.|+ ...+.+++++.
T Consensus 275 D~~v~~~gg-~t~~E---A~a~----------g~PvI~~~~~~g~~~--~n~~~~~~~G~---------~~~~~~~~~l~ 329 (380)
T PRK13609 275 SCMITKPGG-ITLSE---AAAL----------GVPVILYKPVPGQEK--ENAMYFERKGA---------AVVIRDDEEVF 329 (380)
T ss_pred cEEEeCCCc-hHHHH---HHHh----------CCCEEECCCCCCcch--HHHHHHHhCCc---------EEEECCHHHHH
Confidence 988876665 36544 5554 589998764322211 00111222232 33568889999
Q ss_pred HHHHhhhcCC
Q 028080 186 SYLAEFYDLS 195 (214)
Q Consensus 186 ~~l~~~~~~~ 195 (214)
+.|.+.+..|
T Consensus 330 ~~i~~ll~~~ 339 (380)
T PRK13609 330 AKTEALLQDD 339 (380)
T ss_pred HHHHHHHCCH
Confidence 8888876433
No 16
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=70.25 E-value=8.3 Score=35.14 Aligned_cols=63 Identities=29% Similarity=0.407 Sum_probs=36.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|++|.-|||. |+.| +++. .+|+|++++.+- .+..+. ..+.+.| .-..++|++++.
T Consensus 275 Dl~I~k~gg~-tl~E---A~a~----------G~PvI~~~~~pg-qe~~N~-~~~~~~G---------~g~~~~~~~~l~ 329 (391)
T PRK13608 275 QLMITKPGGI-TISE---GLAR----------CIPMIFLNPAPG-QELENA-LYFEEKG---------FGKIADTPEEAI 329 (391)
T ss_pred hEEEeCCchH-HHHH---HHHh----------CCCEEECCCCCC-cchhHH-HHHHhCC---------cEEEeCCHHHHH
Confidence 9999878775 7555 5554 589999875321 111110 0112222 223467888888
Q ss_pred HHHHhhhc
Q 028080 186 SYLAEFYD 193 (214)
Q Consensus 186 ~~l~~~~~ 193 (214)
+.+.+.+.
T Consensus 330 ~~i~~ll~ 337 (391)
T PRK13608 330 KIVASLTN 337 (391)
T ss_pred HHHHHHhc
Confidence 88887754
No 17
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=67.77 E-value=13 Score=29.81 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=44.7
Q ss_pred HHHHHHhHhhhhhcCCCCccEEEEeCCCC-CCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCC
Q 028080 87 SARKHGLIDCAVRNDSCDRTAVVALPGGV-GTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT 165 (214)
Q Consensus 87 ~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~-GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf 165 (214)
.-|-+.+++.| |.+|+.-|-- =--+--|.+=.-.. ..||+|++.....--||.+ .
T Consensus 63 ~iRT~~li~~a--------DvVVvrFGekYKQWNaAfDAg~a~A-------lgKplI~lh~~~~~HpLKE----v----- 118 (141)
T PF11071_consen 63 AIRTRTLIEKA--------DVVVVRFGEKYKQWNAAFDAGYAAA-------LGKPLITLHPEELHHPLKE----V----- 118 (141)
T ss_pred HHHHHHHHhhC--------CEEEEEechHHHHHHHHhhHHHHHH-------cCCCeEEecchhccccHHH----H-----
Confidence 46778888887 9999987741 11122222222222 2689999987654334332 2
Q ss_pred CChhhhcccEEEeCCHHHHHHHHH
Q 028080 166 VAKDEVASLWKICDSNSEALSYLA 189 (214)
Q Consensus 166 i~~~~~~~~i~~~~s~ee~~~~l~ 189 (214)
+. ....++.+|+++++.|+
T Consensus 119 -da----~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 119 -DA----AALAVAETPEQVVEILR 137 (141)
T ss_pred -hH----hhHhhhCCHHHHHHHHH
Confidence 11 22357999999999885
No 18
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=65.68 E-value=6.3 Score=31.16 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccch-HHHHHHHhHHHcCCCChhhhcccEEEeCCHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK-KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 184 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~-~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~ 184 (214)
| +|+--||.||+.|+. + ..+|.|++-..+-.+ .-...-+.+.+.|.... +..-+.+++++
T Consensus 74 D-lvIs~aG~~Ti~E~l---~----------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~-----~~~~~~~~~~L 134 (167)
T PF04101_consen 74 D-LVISHAGAGTIAEAL---A----------LGKPAIVIPLPGAADNHQEENAKELAKKGAAIM-----LDESELNPEEL 134 (167)
T ss_dssp S-EEEECS-CHHHHHHH---H----------CT--EEEE--TTT-T-CHHHHHHHHHHCCCCCC-----SECCC-SCCCH
T ss_pred C-EEEeCCCccHHHHHH---H----------cCCCeeccCCCCcchHHHHHHHHHHHHcCCccc-----cCcccCCHHHH
Confidence 8 777778889988854 3 268988874322111 21222233555554221 11223346667
Q ss_pred HHHHHhhh
Q 028080 185 LSYLAEFY 192 (214)
Q Consensus 185 ~~~l~~~~ 192 (214)
.+.+.+..
T Consensus 135 ~~~i~~l~ 142 (167)
T PF04101_consen 135 AEAIEELL 142 (167)
T ss_dssp HHHHHCHC
T ss_pred HHHHHHHH
Confidence 77776654
No 19
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=62.90 E-value=11 Score=34.63 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred eecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccc---hHHHHHH
Q 028080 81 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY---KKLLDFL 157 (214)
Q Consensus 81 i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w---~~l~~~l 157 (214)
+.+..|.+.....+..| |.+|.=+| ..|+.|+.. ..+|.|++-. .++ +...+ -
T Consensus 237 ~~v~~f~~dm~~~~~~A--------DLvIsRaG-a~Ti~E~~a-------------~g~P~IliP~-p~~~~~~Q~~N-A 292 (357)
T COG0707 237 VRVLPFIDDMAALLAAA--------DLVISRAG-ALTIAELLA-------------LGVPAILVPY-PPGADGHQEYN-A 292 (357)
T ss_pred EEEeeHHhhHHHHHHhc--------cEEEeCCc-ccHHHHHHH-------------hCCCEEEeCC-CCCccchHHHH-H
Confidence 33344555555555555 97776665 579999752 1579999965 466 22211 1
Q ss_pred HhHHHcCCCChhhhcccEEEeC-CHHHHHHHHHhhhcC
Q 028080 158 GDCEDWGTVAKDEVASLWKICD-SNSEALSYLAEFYDL 194 (214)
Q Consensus 158 ~~~~~~gfi~~~~~~~~i~~~~-s~ee~~~~l~~~~~~ 194 (214)
+.+.+.|.- ..+.-.+ |++++.+.|.+.+..
T Consensus 293 ~~l~~~gaa------~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 293 KFLEKAGAA------LVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred HHHHhCCCE------EEeccccCCHHHHHHHHHHHhcC
Confidence 224444431 1111222 578999999887643
No 20
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=61.55 E-value=1.3e+02 Score=27.50 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=41.7
Q ss_pred ccEEE-EeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc-cchHHHHHHHhHHHcCCCChhhhcccEEEeCCHH
Q 028080 105 RTAVV-ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182 (214)
Q Consensus 105 sDa~I-~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g-~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~e 182 (214)
.|+++ .++||+...+++.+.+.-..-.. ..+||+++- ..| .-+...+ .+.+.|+ -+.+++|++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~---~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi--------~ip~f~~pe 375 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEV---GVTVPLVVR-LEGTNVELGKK---ILAESGL--------NIIAADTLD 375 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhc---CCCCcEEEE-eCCCCHHHHHH---HHHHCCC--------CceecCCHH
Confidence 46665 46678877888887776542211 137899554 333 2222221 1322221 156889999
Q ss_pred HHHHHHHhh
Q 028080 183 EALSYLAEF 191 (214)
Q Consensus 183 e~~~~l~~~ 191 (214)
++++.+.+.
T Consensus 376 ~A~~al~~~ 384 (388)
T PRK00696 376 DAAQKAVEA 384 (388)
T ss_pred HHHHHHHHH
Confidence 999999864
No 21
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=59.21 E-value=33 Score=30.92 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=37.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|++|.-+| .+|+.| +++. .+|+|+.+.-. ....-. .+.+.+.|. -..+.|++++.
T Consensus 284 Dv~V~~~g-~~ti~E---Ama~----------g~PvI~~~~~p-gqe~gn-~~~i~~~g~---------g~~~~~~~~la 338 (382)
T PLN02605 284 DCIITKAG-PGTIAE---ALIR----------GLPIILNGYIP-GQEEGN-VPYVVDNGF---------GAFSESPKEIA 338 (382)
T ss_pred CEEEECCC-cchHHH---HHHc----------CCCEEEecCCC-ccchhh-HHHHHhCCc---------eeecCCHHHHH
Confidence 99887555 478666 5553 68999987411 011100 122232231 12458999999
Q ss_pred HHHHhhhcC
Q 028080 186 SYLAEFYDL 194 (214)
Q Consensus 186 ~~l~~~~~~ 194 (214)
+.+.+.+..
T Consensus 339 ~~i~~ll~~ 347 (382)
T PLN02605 339 RIVAEWFGD 347 (382)
T ss_pred HHHHHHHcC
Confidence 999887643
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=59.09 E-value=22 Score=30.93 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeC--CHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD--SNSE 183 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~--s~ee 183 (214)
|++|. ++|..|+-| +++. .+|+|..+..+.-... .....++.++ .. ..+.-.. ++++
T Consensus 252 d~~v~-~~g~~~l~E---a~~~----------g~Pvv~~~~~~~~~~~-~~~~~~i~~~-----~~-G~~~~~~~~~~~~ 310 (348)
T TIGR01133 252 DLVIS-RAGASTVAE---LAAA----------GVPAILIPYPYAADDQ-YYNAKFLEDL-----GA-GLVIRQKELLPEK 310 (348)
T ss_pred CEEEE-CCChhHHHH---HHHc----------CCCEEEeeCCCCccch-hhHHHHHHHC-----CC-EEEEecccCCHHH
Confidence 98886 555557655 4443 6899988653211110 0001122211 11 1122222 5999
Q ss_pred HHHHHHhhhcCCC
Q 028080 184 ALSYLAEFYDLSS 196 (214)
Q Consensus 184 ~~~~l~~~~~~~~ 196 (214)
+.+.|.+.+..|.
T Consensus 311 l~~~i~~ll~~~~ 323 (348)
T TIGR01133 311 LLEALLKLLLDPA 323 (348)
T ss_pred HHHHHHHHHcCHH
Confidence 9999998875443
No 23
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=56.82 E-value=33 Score=30.20 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=37.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc--cchHHHHHHHhHHHcCCCChhhhcccEEEeCC--H
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS--FYKKLLDFLGDCEDWGTVAKDEVASLWKICDS--N 181 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g--~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s--~ 181 (214)
|++|. ++|.+|+-| +++. .+|+|.....+ ..+.... -+.+.+.|. ..+.-.++ +
T Consensus 254 d~~i~-~~g~~~~~E---a~~~----------g~Pvv~~~~~~~~~~~~~~~-~~~i~~~~~-------g~~~~~~~~~~ 311 (357)
T PRK00726 254 DLVIC-RAGASTVAE---LAAA----------GLPAILVPLPHAADDHQTAN-ARALVDAGA-------ALLIPQSDLTP 311 (357)
T ss_pred CEEEE-CCCHHHHHH---HHHh----------CCCEEEecCCCCCcCcHHHH-HHHHHHCCC-------EEEEEcccCCH
Confidence 98885 566677555 4554 68999876421 1111110 122333231 11222234 8
Q ss_pred HHHHHHHHhhhcCCC
Q 028080 182 SEALSYLAEFYDLSS 196 (214)
Q Consensus 182 ee~~~~l~~~~~~~~ 196 (214)
+++.+.|++.+..|.
T Consensus 312 ~~l~~~i~~ll~~~~ 326 (357)
T PRK00726 312 EKLAEKLLELLSDPE 326 (357)
T ss_pred HHHHHHHHHHHcCHH
Confidence 999999998765544
No 24
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=55.80 E-value=40 Score=29.27 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhhhcCC
Q 028080 180 SNSEALSYLAEFYDLS 195 (214)
Q Consensus 180 s~ee~~~~l~~~~~~~ 195 (214)
|++++.+.|.+++..|
T Consensus 310 ~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 310 TPERLAAALLELLSDP 325 (350)
T ss_pred CHHHHHHHHHHHhcCH
Confidence 7999999999886543
No 25
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=54.80 E-value=22 Score=28.57 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=43.9
Q ss_pred HHHHHHhHhhhhhcCCCCccEEEEeCCCC-CCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCC
Q 028080 87 SARKHGLIDCAVRNDSCDRTAVVALPGGV-GTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT 165 (214)
Q Consensus 87 ~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~-GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf 165 (214)
.-|-+.+++.| |.+|+.-|-- =--+--|.+=.-.- ..||+|++.....--||.+ .
T Consensus 66 aiRT~~li~~a--------DvvVvrFGekYKQWNaAfDAg~aaA-------lgKplI~lh~~~~~HpLKE----v----- 121 (144)
T TIGR03646 66 NIRTRKLIEKA--------DVVIALFGEKYKQWNAAFDAGYAAA-------LGKPLIILRPEELIHPLKE----V----- 121 (144)
T ss_pred hHHHHHHHhhC--------CEEEEEechHHHHHHHHhhHHHHHH-------cCCCeEEecchhccccHHH----H-----
Confidence 46777788887 9999987741 11222222222211 2689999987643333322 2
Q ss_pred CChhhhcccEEEeCCHHHHHHHHH
Q 028080 166 VAKDEVASLWKICDSNSEALSYLA 189 (214)
Q Consensus 166 i~~~~~~~~i~~~~s~ee~~~~l~ 189 (214)
+. ...-++.+|+.+++.|+
T Consensus 122 -da----aA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 122 -DN----KAQAVVETPEQAIETLK 140 (144)
T ss_pred -hH----HHHHHhcCHHHHHHHHH
Confidence 11 12357899999999885
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=54.61 E-value=1.3e+02 Score=27.99 Aligned_cols=125 Identities=19% Similarity=0.150 Sum_probs=64.9
Q ss_pred CcEEEecCccc----HHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCC
Q 028080 28 DCTTWSGAGPG----LMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSC 103 (214)
Q Consensus 28 ~~~V~~GG~~G----lM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~ 103 (214)
..+.++=|+.+ +-..+.+.+.+.+.++|=-....... +.-++ +..++...... ..++..|
T Consensus 238 ~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~-------~~~~p-~n~~v~~~~p~--~~~l~~a------ 301 (406)
T COG1819 238 PIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDT-------LVNVP-DNVIVADYVPQ--LELLPRA------ 301 (406)
T ss_pred CeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccc-------cccCC-CceEEecCCCH--HHHhhhc------
Confidence 34445556666 55666677777777665333221110 11111 12333333322 2255554
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEE-eCCHH
Q 028080 104 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNS 182 (214)
Q Consensus 104 ~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~s~e 182 (214)
|+ ++-.||.||..|. +. ..+|+|++-. .||..... ....+.|. ...+.+ .-+++
T Consensus 302 --d~-vI~hGG~gtt~ea---L~----------~gvP~vv~P~--~~DQ~~nA-~rve~~G~------G~~l~~~~l~~~ 356 (406)
T COG1819 302 --DA-VIHHGGAGTTSEA---LY----------AGVPLVVIPD--GADQPLNA-ERVEELGA------GIALPFEELTEE 356 (406)
T ss_pred --CE-EEecCCcchHHHH---HH----------cCCCEEEecC--CcchhHHH-HHHHHcCC------ceecCcccCCHH
Confidence 64 5679999998884 33 3789999864 36654331 22333332 112222 35677
Q ss_pred HHHHHHHhhhc
Q 028080 183 EALSYLAEFYD 193 (214)
Q Consensus 183 e~~~~l~~~~~ 193 (214)
.+.+.+++.+.
T Consensus 357 ~l~~av~~vL~ 367 (406)
T COG1819 357 RLRAAVNEVLA 367 (406)
T ss_pred HHHHHHHHHhc
Confidence 77777777653
No 27
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=54.19 E-value=53 Score=28.73 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=34.7
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|+||.=+| |..+|. +. ..+|+|..+..+.+.. +.+.|. .+.+.++++++.
T Consensus 279 d~~v~~Sg--gi~~Ea---~~----------~g~PvI~~~~~~~~~~-------~~~~g~--------~~~~~~~~~~i~ 328 (363)
T cd03786 279 DLVLTDSG--GIQEEA---SF----------LGVPVLNLRDRTERPE-------TVESGT--------NVLVGTDPEAIL 328 (363)
T ss_pred cEEEEcCc--cHHhhh---hh----------cCCCEEeeCCCCccch-------hhheee--------EEecCCCHHHHH
Confidence 98885555 555453 22 2589999874332222 222231 123345799999
Q ss_pred HHHHhhhcCC
Q 028080 186 SYLAEFYDLS 195 (214)
Q Consensus 186 ~~l~~~~~~~ 195 (214)
+.+.+.+..|
T Consensus 329 ~~i~~ll~~~ 338 (363)
T cd03786 329 AAIEKLLSDE 338 (363)
T ss_pred HHHHHHhcCc
Confidence 9999886543
No 28
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=54.09 E-value=15 Score=32.69 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=14.1
Q ss_pred eCCHHHHHHHHHhhhcCCC
Q 028080 178 CDSNSEALSYLAEFYDLSS 196 (214)
Q Consensus 178 ~~s~ee~~~~l~~~~~~~~ 196 (214)
..|++++.+.+.+.+..|.
T Consensus 325 ~~~~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 325 EATPEKLARALLPLLADGA 343 (380)
T ss_pred CCCHHHHHHHHHHHhcCHH
Confidence 4578899999988865444
No 29
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.76 E-value=21 Score=32.03 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=32.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC---ccchHH------HHHHHhHHHcCC
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD---SFYKKL------LDFLGDCEDWGT 165 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~---g~w~~l------~~~l~~~~~~gf 165 (214)
|.+|++ ||=||+.+.+..+.- .++|++-+|.. ||.... .+.++.+.+..+
T Consensus 59 d~vi~~-GGDGT~l~~~~~~~~---------~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~ 117 (305)
T PRK02645 59 DLAIVL-GGDGTVLAAARHLAP---------HDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRY 117 (305)
T ss_pred CEEEEE-CCcHHHHHHHHHhcc---------CCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCc
Confidence 766666 999999987654431 37899999962 566653 345555554443
No 30
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=52.40 E-value=54 Score=27.79 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=19.7
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 148 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g 148 (214)
|++++ .+|+|+-+.+..++.... . ++.|+ +++.++
T Consensus 79 d~v~i-g~gl~~~~~~~~i~~~~~--~----~~~pv-VlDa~~ 113 (254)
T cd01171 79 DAVVI-GPGLGRDEEAAEILEKAL--A----KDKPL-VLDADA 113 (254)
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHH--h----cCCCE-EEEcHH
Confidence 87666 555888655544444321 1 25786 467654
No 31
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=52.33 E-value=81 Score=24.90 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC
Q 028080 104 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 147 (214)
Q Consensus 104 ~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~ 147 (214)
+..++++.-=|++--.+|++++.-.. .+||||++...
T Consensus 54 ~t~~I~ly~E~~~d~~~f~~~~~~a~-------~~KPVv~lk~G 90 (138)
T PF13607_consen 54 DTRVIVLYLEGIGDGRRFLEAARRAA-------RRKPVVVLKAG 90 (138)
T ss_dssp S--EEEEEES--S-HHHHHHHHHHHC-------CCS-EEEEE--
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHh-------cCCCEEEEeCC
Confidence 35888888889999999988877642 25999999863
No 32
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=51.51 E-value=49 Score=27.44 Aligned_cols=41 Identities=29% Similarity=0.279 Sum_probs=28.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 150 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w 150 (214)
.+.|+|+||. |...+++.|.-..-. +. .-+.+.+++.+.+|
T Consensus 22 ~~~i~LsgGs-tp~~~y~~L~~~~~~--~i-~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 22 RAVIALSGGS-TPKPLYQELAKLHKE--RI-DWSRVHFFNVDERV 62 (199)
T ss_dssp SEEEEE--SC-THHHHHHHHHHHHHT--CS-CGGGEEEEESEEES
T ss_pred CEEEEEcCCH-HHHHHHHHHhhhccc--cC-ChhHeEEEeCcccc
Confidence 8999999995 777888888875411 11 24678899988888
No 33
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=50.34 E-value=25 Score=31.70 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEE-eCCHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNSEA 184 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~s~ee~ 184 (214)
|+ ++..||.||+.|.. . ..+|+|++-. ...+.. ..+.+.+.|.- ..+.. .-+++++
T Consensus 293 ~~-~I~hgG~~t~~Eal---~----------~G~P~v~~p~-~~dq~~--~a~~l~~~g~g------~~l~~~~~~~~~l 349 (392)
T TIGR01426 293 DA-FITHGGMNSTMEAL---F----------NGVPMVAVPQ-GADQPM--TARRIAELGLG------RHLPPEEVTAEKL 349 (392)
T ss_pred CE-EEECCCchHHHHHH---H----------hCCCEEecCC-cccHHH--HHHHHHHCCCE------EEeccccCCHHHH
Confidence 75 55788999988743 3 2689988753 222222 22334444421 11111 2367888
Q ss_pred HHHHHhhhcCC
Q 028080 185 LSYLAEFYDLS 195 (214)
Q Consensus 185 ~~~l~~~~~~~ 195 (214)
.+.+.+.+..|
T Consensus 350 ~~ai~~~l~~~ 360 (392)
T TIGR01426 350 REAVLAVLSDP 360 (392)
T ss_pred HHHHHHHhcCH
Confidence 88888876544
No 34
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=49.85 E-value=60 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.631 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH-----HHHhHHHcC
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWG 164 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~g 164 (214)
|++.+|+.+.-.. . .++.|++++ +||+++.+ |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r--~---~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN--G---EIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh--c---CCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 6788887766543 1 147899887 48888776 566676655
No 35
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=49.55 E-value=46 Score=28.75 Aligned_cols=128 Identities=23% Similarity=0.172 Sum_probs=58.4
Q ss_pred EEEec--CcccHHHHHHHHHHhcC-CcEEEEecCCcccccccCCCCCCCCcccee-ecCchHHH-HHHhHhhhhhcCCCC
Q 028080 30 TTWSG--AGPGLMDAVTKGAMQAG-KPVGGFKVGKEAGEWTASNFHPYLPLETYL-TCRFFSAR-KHGLIDCAVRNDSCD 104 (214)
Q Consensus 30 ~V~~G--G~~GlM~ava~ga~~~g-G~viGIi~~~e~~e~~~~~~n~~l~~e~~i-~~~~m~~R-k~~m~~~s~~~~~~~ 104 (214)
+|++| +++|----++++|.+.| |.|.=+.|....... ..+.+ |..+ ....-... -....+..
T Consensus 2 lvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~-----~~~~P-e~m~~~~~~~~~~~~~~~~~~~------- 68 (242)
T PF01256_consen 2 LVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPVI-----ASYSP-EAMVSPLPSDEDVEILELLEKA------- 68 (242)
T ss_dssp EEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHH-----HHHTT-TSEEEETTHCCHHHHHHHHCH--------
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHH-----HhCCc-eeEEecccchhhhhhHhhhccC-------
Confidence 45555 44566666778888887 555555543211110 11122 2222 21100111 11123333
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHH
Q 028080 105 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 184 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~ 184 (214)
|++++=|| .|+-++-.+++.... . .++| ++++-++ |. .+.+.. .. ....++++..+-|.
T Consensus 69 -~av~iGPG-lg~~~~~~~~~~~~~--~----~~~p-~VlDADa----L~----~l~~~~--~~--~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 69 -DAVVIGPG-LGRDEETEELLEELL--E----SDKP-LVLDADA----LN----LLAENP--KK--RNAPVILTPHPGEF 127 (242)
T ss_dssp -SEEEE-TT--SSSHHHHHHHHHHH--H----HCST-EEEECHH----HH----CHHHCC--CC--SSSCEEEE-BHHHH
T ss_pred -CEEEeecC-CCCchhhHHHHHHHH--h----hcce-EEEehHH----HH----HHHhcc--cc--CCCCEEECCCHHHH
Confidence 88888876 567676555443321 1 1568 4555432 21 121111 11 23456788888888
Q ss_pred HHHHHhh
Q 028080 185 LSYLAEF 191 (214)
Q Consensus 185 ~~~l~~~ 191 (214)
-+.+...
T Consensus 128 ~rL~~~~ 134 (242)
T PF01256_consen 128 ARLLGKS 134 (242)
T ss_dssp HHHHTTT
T ss_pred HHHhCCc
Confidence 8876543
No 36
>PLN02591 tryptophan synthase
Probab=48.59 E-value=52 Score=28.73 Aligned_cols=40 Identities=25% Similarity=0.645 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH-----HHHhHHHcC
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWG 164 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~g 164 (214)
|++.+|+.+.-.. . ..+.|++++ +||+++.+ |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r--~---~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA--P---QLSCPIVLF---TYYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh--c---CCCCCEEEE---ecccHHHHhHHHHHHHHHHHcC
Confidence 7888888776533 1 146899887 48887665 566666655
No 37
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.63 E-value=50 Score=28.91 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHH-HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEE
Q 028080 7 HYLQ-SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG 55 (214)
Q Consensus 7 ~y~~-A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~vi 55 (214)
.|.. |..+-.- +|.+||..++-|-..|-|+-+-+.|.+++|..+
T Consensus 92 ~~Lr~A~~fVa~-----vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 92 SYLRRALNFVAH-----VAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHH-----HHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 4554 7788888 999999999999999999999999999999764
No 38
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=47.04 E-value=25 Score=30.59 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEE
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVG 55 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~vi 55 (214)
|.++++|||+.|+=-+.++-..+.|-.||
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VI 33 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVI 33 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEE
Confidence 56889999999999999999999998774
No 39
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.78 E-value=39 Score=30.47 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=35.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCcc-chHHHHHHHhHHHcCCCCh
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF-YKKLLDFLGDCEDWGTVAK 168 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~-w~~l~~~l~~~~~~gfi~~ 168 (214)
|+||+---.+.-..|- ++ ..||+.++-.++| -..+--|++.+++.+..++
T Consensus 246 dyii~TaDSinM~sEA---as----------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~ 296 (329)
T COG3660 246 DYIISTADSINMCSEA---AS----------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARP 296 (329)
T ss_pred ceEEEecchhhhhHHH---hc----------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccc
Confidence 9999977666666653 33 2689999988888 5555666677877665554
No 40
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=46.39 E-value=58 Score=29.29 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=46.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhccc--------EEE
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASL--------WKI 177 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~--------i~~ 177 (214)
|+||+-+-.+-=+.| +++. .|||.++...+--..+-.+++.|.+.|.+++-+ +. +.-
T Consensus 230 d~i~VT~DSvSMvsE---A~~t----------G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~--~~~~~~~~~~~~p 294 (311)
T PF06258_consen 230 DAIVVTEDSVSMVSE---AAAT----------GKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT--GWRDLEQWTPYEP 294 (311)
T ss_pred CEEEEcCccHHHHHH---HHHc----------CCCEEEecCCCcchHHHHHHHHHHHCCCEEECC--CcccccccccCCC
Confidence 999997665544444 4442 589999998765556777778899999887632 22 122
Q ss_pred eCCHHHHHHHHHhh
Q 028080 178 CDSNSEALSYLAEF 191 (214)
Q Consensus 178 ~~s~ee~~~~l~~~ 191 (214)
.+..+.+.+.|.+.
T Consensus 295 l~et~r~A~~i~~r 308 (311)
T PF06258_consen 295 LDETDRVAAEIRER 308 (311)
T ss_pred ccHHHHHHHHHHHH
Confidence 34456666666654
No 41
>PRK00861 putative lipid kinase; Reviewed
Probab=44.73 E-value=47 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=33.1
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~ 60 (214)
|.++.+. .+..+.-+|+..||-|-.-.+..+.... +..+||+|.
T Consensus 46 a~~~a~~-----~~~~~~d~vv~~GGDGTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQE-----AIERGAELIIASGGDGTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHH-----HHhcCCCEEEEECChHHHHHHHHHHhcC-CCcEEEEcC
Confidence 5566666 6555556788889999999999998765 467999984
No 42
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=44.08 E-value=23 Score=32.08 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=31.8
Q ss_pred ccchHHHHHHHhHHHcCCCChhhhcc--cEEEeCCHHHHHHHHHh
Q 028080 148 SFYKKLLDFLGDCEDWGTVAKDEVAS--LWKICDSNSEALSYLAE 190 (214)
Q Consensus 148 g~w~~l~~~l~~~~~~gfi~~~~~~~--~i~~~~s~ee~~~~l~~ 190 (214)
.+|+.+-+.+..|+.+|.|+++.++. +..++.++||+.+.+++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 47999999999999999999887644 33667999999998875
No 43
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=43.08 E-value=15 Score=33.19 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHH---cCCCChhhhcccEEEeCCHHHHHHHH
Q 028080 112 PGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED---WGTVAKDEVASLWKICDSNSEALSYL 188 (214)
Q Consensus 112 PGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~---~gfi~~~~~~~~i~~~~s~ee~~~~l 188 (214)
-.+.||+||+|+..+-. .++++ .||+.++.+.+ +.. -=|++-++ .-.+|...++.|
T Consensus 151 ~~~~~~~e~~fe~F~~G------------~~~~G--p~~dHVl~~W~-~~~~~~VLFl~YEd------mk~dp~~~ikrl 209 (297)
T KOG1584|consen 151 QPGPGTFEEFFESFCNG------------VVPYG--PWWDHVLGYWE-LEDPKNVLFLKYED------MKADPKGEIKKL 209 (297)
T ss_pred CCCCCcHHHHHHHHhCC------------cCCcC--ChHHHHHHHHH-hcCCCceEEEEHHH------hhhCHHHHHHHH
Confidence 46778899999988852 23454 59999998876 211 01111111 125788999999
Q ss_pred HhhhcCCCcccc
Q 028080 189 AEFYDLSSIDKR 200 (214)
Q Consensus 189 ~~~~~~~~~~~~ 200 (214)
.+|+..|...+.
T Consensus 210 aeFLg~~~~~Ee 221 (297)
T KOG1584|consen 210 AEFLGCPFTKEE 221 (297)
T ss_pred HHHhCCCCCHHH
Confidence 999877665544
No 44
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=42.45 E-value=1e+02 Score=23.63 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=4.8
Q ss_pred cEEEEeCCCCC
Q 028080 106 TAVVALPGGVG 116 (214)
Q Consensus 106 Da~I~lPGG~G 116 (214)
|++|+|+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 34444444444
No 45
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=41.68 E-value=2.4e+02 Score=25.16 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=51.1
Q ss_pred cCCcEEEecCc--ccHHHHHHHHHHhcCC-cEEEEecCCcccccccCCCCCCCCccc-eeecCchHHHHH-HhHhhhhhc
Q 028080 26 LLDCTTWSGAG--PGLMDAVTKGAMQAGK-PVGGFKVGKEAGEWTASNFHPYLPLET-YLTCRFFSARKH-GLIDCAVRN 100 (214)
Q Consensus 26 ~~~~~V~~GG~--~GlM~ava~ga~~~gG-~viGIi~~~e~~e~~~~~~n~~l~~e~-~i~~~~m~~Rk~-~m~~~s~~~ 100 (214)
+|..+|++|.. .|---.++.+|...|. .|.=..|.. ... ....+.+ |. ++.+.....+.+ .+.+..
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~-~~~----~~~s~~P-e~mv~~~~~~~~~~~~~~~~~~--- 102 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPE-AAS----ALKSYLP-ELMVIEVEGKKLLEERELVERA--- 102 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchh-hhh----hHhhcCc-ceeEeecccchhhHHhhhhccC---
Confidence 44555666652 6888888899999884 333233321 110 0122333 22 222233332222 445554
Q ss_pred CCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCC-ccEEEE
Q 028080 101 DSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP-VPFLVM 144 (214)
Q Consensus 101 ~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~-kPiill 144 (214)
|++++ .-|.|.-+|..+++...-. .. +|+|+-
T Consensus 103 -----~avvi-GpGlG~~~~~~~~~~~~l~------~~~~p~ViD 135 (284)
T COG0063 103 -----DAVVI-GPGLGRDAEGQEALKELLS------SDLKPLVLD 135 (284)
T ss_pred -----CEEEE-CCCCCCCHHHHHHHHHHHh------ccCCCEEEe
Confidence 76655 4578998877666554321 12 788764
No 46
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=41.21 E-value=1.3e+02 Score=25.14 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=31.4
Q ss_pred cEEEEeCCC------CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC--ccchHHHHHHHhH
Q 028080 106 TAVVALPGG------VGTLDEMFEILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLGDC 160 (214)
Q Consensus 106 Da~I~lPGG------~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~--g~w~~l~~~l~~~ 160 (214)
|++|+.-=+ .||.-|+-.++++ .||++.+..+ .|...+-.++-..
T Consensus 70 D~vla~ld~fr~~~DsGTa~E~GYa~Al----------gKPv~~~~~d~~~~~~r~~~~~~~~ 122 (172)
T COG3613 70 DIVLANLDPFRPDPDSGTAFELGYAIAL----------GKPVYAYRKDAANYASRLNAHLGEV 122 (172)
T ss_pred CEEEEecCCCCCCCCCcchHHHHHHHHc----------CCceEEEeecccchhhHHHHhHHHH
Confidence 999988655 6899999988875 5899888754 2344444444333
No 47
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=39.70 E-value=66 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=20.9
Q ss_pred cEEEEeCCC-----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080 106 TAVVALPGG-----VGTLDEMFEILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 106 Da~I~lPGG-----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
|.+|+.+|| ..+....+..+.+...-.. .+||+++++.
T Consensus 65 ~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~~~g~ 107 (286)
T PF04230_consen 65 DDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKK---LGKPVIILGQ 107 (286)
T ss_pred CeEEEECCcccccCCCcchhhHHHHHHHHHHHh---cCCCeEEECc
Confidence 777777775 2333332222333333222 5899999986
No 48
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.65 E-value=97 Score=26.85 Aligned_cols=33 Identities=24% Similarity=0.690 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHH
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 156 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~ 156 (214)
||+-+++++....-. | ...||+|+ |||+|+++.
T Consensus 78 tl~~i~emvk~ar~~--g--vt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQ--G--VTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhccc--C--cccceeee---ecccHHHhh
Confidence 899998887765322 1 35799998 599999875
No 49
>PRK13054 lipid kinase; Reviewed
Probab=39.29 E-value=72 Score=27.98 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcC-C--cEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAG-K--PVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~g-G--~viGIi~~ 60 (214)
|.++.+. .++.+.-.|+..||-|..-.++.+....+ + ..+||+|.
T Consensus 45 a~~~a~~-----~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 45 AARYVEE-----ALALGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHH-----HHHcCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 4556655 54444456667777777666677776542 2 36999984
No 50
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.21 E-value=50 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.6
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.++++||..|+=.++++...+.|+.++-++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEe
Confidence 468999999999999999999988665554
No 51
>PRK13055 putative lipid kinase; Reviewed
Probab=38.92 E-value=69 Score=28.72 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=32.2
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcC-CcEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~g-G~viGIi~~ 60 (214)
|.++.+. .+..+.-+|+-.||-|.+-.+..|....+ ...+||+|.
T Consensus 48 a~~~~~~-----~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKR-----AAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHH-----HhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 4556655 55554456778888899999999988654 356999984
No 52
>PRK13337 putative lipid kinase; Reviewed
Probab=38.79 E-value=77 Score=27.86 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCC-cEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG-~viGIi~~ 60 (214)
|.++.+. +++.+.-.|+..||-|..-.+..|....+- ..+||+|.
T Consensus 46 a~~~a~~-----~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAER-----AVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHH-----HHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 5566666 666555567788888888888888776543 47999984
No 53
>PRK05854 short chain dehydrogenase; Provisional
Probab=38.67 E-value=48 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=27.6
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..+|+|||+.|+-.++++.-.+.|..|+.+-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999999998887663
No 54
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=38.46 E-value=1.2e+02 Score=28.39 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=42.6
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC-CccchHHHHHHHhHHHcC
Q 028080 86 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWG 164 (214)
Q Consensus 86 m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~-~g~w~~l~~~l~~~~~~g 164 (214)
|..|-..++.-| +.+|. -||+.|.=| +++. +||.+++-. .+-=..++.- +.+.+-|
T Consensus 284 f~~~~~~ll~gA--------~~vVS-m~GYNTvCe---ILs~----------~k~aLivPr~~p~eEQliRA-~Rl~~LG 340 (400)
T COG4671 284 FRNDFESLLAGA--------RLVVS-MGGYNTVCE---ILSF----------GKPALIVPRAAPREEQLIRA-QRLEELG 340 (400)
T ss_pred hhhhHHHHHHhh--------heeee-cccchhhhH---HHhC----------CCceEEeccCCCcHHHHHHH-HHHHhcC
Confidence 445555566655 76555 588999655 5554 688777642 1111222221 2344445
Q ss_pred CCChhhhcccEEEeCCHHHHHHHHHhhhcCCC
Q 028080 165 TVAKDEVASLWKICDSNSEALSYLAEFYDLSS 196 (214)
Q Consensus 165 fi~~~~~~~~i~~~~s~ee~~~~l~~~~~~~~ 196 (214)
.++- +..---+++-+.++|...+..|+
T Consensus 341 L~dv-----L~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 341 LVDV-----LLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred ccee-----eCcccCChHHHHHHHHhcccCCC
Confidence 4321 00111236777777777655443
No 55
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=38.22 E-value=31 Score=26.30 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=25.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080 108 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL 154 (214)
Q Consensus 108 ~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~ 154 (214)
+|+.-||=||+.|+...+.-... ..+..|+.++-. |-=+.+-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~----~~~~~plgiiP~-GTgNdfa 93 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKREL----PLPEPPVAVLPL-GTGNDLA 93 (124)
T ss_pred EEEEEccccHHHHHHHHHHhccc----ccCCCcEEEeCC-CChhHHH
Confidence 67779999999999766632111 001157877743 4344443
No 56
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=38.12 E-value=2.3e+02 Score=23.38 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCcHHHHHH-HHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCC-----cEEEEecCCccc-ccccC------
Q 028080 3 PDHPHYLQS-FELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-----PVGGFKVGKEAG-EWTAS------ 69 (214)
Q Consensus 3 ~~~~~y~~A-~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG-----~viGIi~~~e~~-e~~~~------ 69 (214)
.+||.+..- ..|-+.+.. +-+.|-.-+++||..|+=--++..|++... +.+-++|..+.. .|...
T Consensus 19 ~~~~~~~~ik~~L~~~i~~--lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~ 96 (177)
T PF06908_consen 19 EKDPKIQVIKKALKKQIIE--LIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQ 96 (177)
T ss_dssp S--HHHHHHHHHHHHHHHH--HHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH--HHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHH
Confidence 467777752 344443211 345577789999999988888888887753 333445643211 11100
Q ss_pred ------CCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeC
Q 028080 70 ------NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP 112 (214)
Q Consensus 70 ------~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP 112 (214)
+...+++.+....-..|..|+..|++.| |.+|++=
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhs--------d~~iavy 137 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSPGQLQKRNRFMVDHS--------DGLIAVY 137 (177)
T ss_dssp HHHHH-SEEEESSSSB---HHHHHHHHHHHHHHS--------SEEEEE-
T ss_pred HHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCC--------CeEEEEE
Confidence 0000011000011134679999999987 9888874
No 57
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=37.87 E-value=96 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhHHHHHhcCCcE-EEe-cCc--ccHHHHHHHHHHhcC
Q 028080 9 LQSFELGGEARHLQIARLLDCT-TWS-GAG--PGLMDAVTKGAMQAG 51 (214)
Q Consensus 9 ~~A~~LG~~~~~~~lA~~~~~~-V~~-GG~--~GlM~ava~ga~~~g 51 (214)
..|+.+|+.++..-++. |..- |+- ||. -|-+.|+++||.++|
T Consensus 66 ~aA~~vG~~la~ra~~~-gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 66 DAAKKVGKLVAERLKEK-GIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHC-CCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 45788999855554443 3333 443 555 599999999999987
No 58
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=37.77 E-value=1.3e+02 Score=22.32 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhHHHHHhcCCcEE-E-ecCcc--cHHHHHHHHHHhcC
Q 028080 8 YLQSFELGGEARHLQIARLLDCTT-W-SGAGP--GLMDAVTKGAMQAG 51 (214)
Q Consensus 8 y~~A~~LG~~~~~~~lA~~~~~~V-~-~GG~~--GlM~ava~ga~~~g 51 (214)
+..|+.+|+.|+..-+. .|..-| + -||.. |-+.|+++++.+.|
T Consensus 56 ~~aA~~vG~~la~r~~~-~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALE-KGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 45578999994333222 222233 2 36664 99999999999977
No 59
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=37.54 E-value=78 Score=27.67 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcC-C--cEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAG-K--PVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~g-G--~viGIi~~ 60 (214)
|.++.+. +++.+.-.|+..||-|..-.+..|....+ + ..+||+|.
T Consensus 41 a~~~a~~-----~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAE-----ALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHH-----HHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 6677777 66665556778888898888888887653 2 25899983
No 60
>PRK04155 chaperone protein HchA; Provisional
Probab=37.45 E-value=37 Score=30.27 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCHHHH------HHHHHHHHhhhhcCCCCccEEEEc
Q 028080 107 AVVALPGGVGTLDEM------FEILALIQLERIGSELPVPFLVMN 145 (214)
Q Consensus 107 a~I~lPGG~GTLeEl------~e~lt~~ql~~~~~~~~kPiilln 145 (214)
..|++|||.|.+..| .+++.|.. ..+|||+-+-
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~------~~~K~VaAIC 187 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWAL------DNDRFIITLC 187 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHH------HcCCEEEEEC
Confidence 356899999987654 34444432 1478887654
No 61
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=36.87 E-value=82 Score=27.56 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEc---CCccchHHHHHHHhHHH---cCCCChhhhcccEEEe--
Q 028080 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---YDSFYKKLLDFLGDCED---WGTVAKDEVASLWKIC-- 178 (214)
Q Consensus 107 a~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln---~~g~w~~l~~~l~~~~~---~gfi~~~~~~~~i~~~-- 178 (214)
|+|+|-||.||= ++. ..+||++=++ ...+.+-.++.+..+.. ++. .. ..++.+
T Consensus 2 a~viLaGG~GtR-----------Lg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~----~I-p~~imts~ 62 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSC----KI-PEQLMNSK 62 (266)
T ss_pred EEEEECCCCccc-----------cCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCC----CC-CEEEEcCc
Confidence 689999999992 222 1467776444 45566666666655422 121 01 222222
Q ss_pred CCHHHHHHHHHhh
Q 028080 179 DSNSEALSYLAEF 191 (214)
Q Consensus 179 ~s~ee~~~~l~~~ 191 (214)
.+.++..++++++
T Consensus 63 ~t~~~t~~~l~~~ 75 (266)
T cd04180 63 YTHEKTQCYFEKI 75 (266)
T ss_pred hhHHHHHHHHHHc
Confidence 4567788888775
No 62
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=36.37 E-value=59 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=18.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
|.+|. +|| +|+-|+ ++. .+|++++-.
T Consensus 243 Dl~Is-~~G-~T~~E~---~a~----------g~P~i~i~~ 268 (279)
T TIGR03590 243 DLAIG-AAG-STSWER---CCL----------GLPSLAICL 268 (279)
T ss_pred CEEEE-CCc-hHHHHH---HHc----------CCCEEEEEe
Confidence 98888 666 897775 343 679988864
No 63
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=36.35 E-value=47 Score=31.05 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=32.5
Q ss_pred chH-HHHHHHhHHHcCCCChhhhcc--cEEEeCCHHHHHHHHHh
Q 028080 150 YKK-LLDFLGDCEDWGTVAKDEVAS--LWKICDSNSEALSYLAE 190 (214)
Q Consensus 150 w~~-l~~~l~~~~~~gfi~~~~~~~--~i~~~~s~ee~~~~l~~ 190 (214)
|.. +-+.++.|+.+|.|++++.+. +..++.|++|+.+.+++
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 544 666788999999999987644 45678999999999874
No 64
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.66 E-value=1.2e+02 Score=26.87 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchH-----HHHHHHhHHHcCCCChhhhcccEEEeCCHHH
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK-----LLDFLGDCEDWGTVAKDEVASLWKICDSNSE 183 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~-----l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee 183 (214)
|++..++++....- ++...|++|+. ||++ +.+|++.+.+.|. +-+++.|=|-|
T Consensus 77 t~~~~lel~~~~r~----~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv-------dGlivpDLP~e 134 (265)
T COG0159 77 TLEDTLELVEEIRA----KGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV-------DGLLVPDLPPE 134 (265)
T ss_pred CHHHHHHHHHHHHh----cCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC-------CEEEeCCCChH
Confidence 67777777765431 11467999995 6665 4556666666563 23456666533
No 65
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=35.48 E-value=39 Score=28.39 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhH
Q 028080 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 160 (214)
Q Consensus 121 l~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~ 160 (214)
+.|+..|.|- .+|+|==|. |||..|++.=+++
T Consensus 124 LreAy~~vKa-------~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 124 LREAYHWVKA-------RRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred HHHHHHHHHh-------hCceeCCCc-cHHHHHHHHHHHh
Confidence 3446666543 579998885 8999999865555
No 66
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=34.95 E-value=73 Score=22.41 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=23.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 148 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g 148 (214)
--+|.|| +|++||+.+.+. +++. .|--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~~-kfg~------~~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIASE-KFGF------SATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHHH-HhCC------CceEEEcCCC
Confidence 5689999 599999987665 5542 2656676554
No 67
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=34.56 E-value=31 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHH------HHHHHHHhhhhcCCCCccEEEEc
Q 028080 108 VVALPGGVGTLDEMF------EILALIQLERIGSELPVPFLVMN 145 (214)
Q Consensus 108 ~I~lPGG~GTLeEl~------e~lt~~ql~~~~~~~~kPiilln 145 (214)
.|++|||.|.+..+. +++.... ..+|||..+-
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~------~~gK~iaAIC 134 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIY------ANGGVVAAVC 134 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHH------HcCCEEEEEC
Confidence 568899999765443 3333221 1478987665
No 68
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=33.89 E-value=2.6e+02 Score=24.00 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=19.1
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 147 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~ 147 (214)
|++++ .||+++-+.+.++..... . ..+|+ +++..
T Consensus 94 davvi-g~Gl~~~~~~~~l~~~~~--~----~~~pv-VlDa~ 127 (272)
T TIGR00196 94 DVVVI-GPGLGQDPSFKKAVEEVL--E----LDKPV-VLDAD 127 (272)
T ss_pred CEEEE-cCCCCCCHHHHHHHHHHH--h----cCCCE-EEEhH
Confidence 76665 666999766444443322 1 36786 45554
No 69
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=33.67 E-value=49 Score=25.68 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHH----HHHHHHHhhhhcCCCCccEEEEcC
Q 028080 108 VVALPGGVGTLDEMF----EILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 108 ~I~lPGG~GTLeEl~----e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
.|++|||.|..+-+. .+..+.+--. . .+|||.-+-.
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~-~--~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFY-E--AGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHH-H--TT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHH-H--cCCeEEecCC
Confidence 678999999655554 1223322211 1 4789987764
No 70
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.62 E-value=1.8e+02 Score=20.95 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=53.1
Q ss_pred EEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEE
Q 028080 30 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVV 109 (214)
Q Consensus 30 ~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I 109 (214)
+++-||........-+-+.+.|+..+-. ..... . .....+-...+..+ |.+|
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~----------~--------~~~~~~l~~~i~~a--------D~VI 53 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH--GRDGG----------D--------EKKASRLPSKIKKA--------DLVI 53 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCC----------C--------ccchhHHHHhcCCC--------CEEE
Confidence 4566777777778888888888876555 11110 0 00111122233344 9999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHh
Q 028080 110 ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 159 (214)
Q Consensus 110 ~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~ 159 (214)
++-+=+.=- ..+...+. .+..++|+++.+..+ |..+.+.|+.
T Consensus 54 v~t~~vsH~----~~~~vk~~---akk~~ip~~~~~~~~-~~~l~~~l~~ 95 (97)
T PF10087_consen 54 VFTDYVSHN----AMWKVKKA---AKKYGIPIIYSRSRG-VSSLERALER 95 (97)
T ss_pred EEeCCcChH----HHHHHHHH---HHHcCCcEEEECCCC-HHHHHHHHHh
Confidence 998765531 01222222 222589999998544 7887776654
No 71
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=33.22 E-value=72 Score=27.88 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=22.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 145 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln 145 (214)
| .|+.-||=||+.|+...+.-. + ...+.|+.++-
T Consensus 54 d-~vv~~GGDGTi~ev~ngl~~~--~---~~~~~~lgiiP 87 (293)
T TIGR03702 54 S-TVIAGGGDGTLREVATALAQI--R---DDAAPALGLLP 87 (293)
T ss_pred C-EEEEEcCChHHHHHHHHHHhh--C---CCCCCcEEEEc
Confidence 5 566889999999998776421 1 00135777774
No 72
>PRK07102 short chain dehydrogenase; Provisional
Probab=33.02 E-value=60 Score=26.74 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=26.0
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
..+++||..|+-.++++...+.|..|+.+-
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 568999999999999999999888877664
No 73
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=33.01 E-value=1.3e+02 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhHHHHHhcCCcE-EEe-cCc--ccHHHHHHHHHHhcC
Q 028080 8 YLQSFELGGEARHLQIARLLDCT-TWS-GAG--PGLMDAVTKGAMQAG 51 (214)
Q Consensus 8 y~~A~~LG~~~~~~~lA~~~~~~-V~~-GG~--~GlM~ava~ga~~~g 51 (214)
...|+.+|+.++..-+.. |..- ++- ||. -|-+.|+++||.++|
T Consensus 60 ~~aA~~vG~lla~ra~~~-gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKK-GITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 345688888844443333 3333 343 443 599999999999987
No 74
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=32.88 E-value=71 Score=26.30 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..+++|||+.|+=.++++...+.|-.|+.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 45789999999999999999999988887764
No 75
>PRK13057 putative lipid kinase; Reviewed
Probab=32.74 E-value=57 Score=28.39 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHH
Q 028080 108 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 187 (214)
Q Consensus 108 ~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~ 187 (214)
.|+.-||=||+.|+...+.- .+.|+.++-.. +..++.+.+-+-.+++++++.
T Consensus 53 ~iiv~GGDGTv~~v~~~l~~---------~~~~lgiiP~G-------------------T~Ndfar~Lg~~~~~~~a~~~ 104 (287)
T PRK13057 53 LVIVGGGDGTLNAAAPALVE---------TGLPLGILPLG-------------------TANDLARTLGIPLDLEAAARV 104 (287)
T ss_pred EEEEECchHHHHHHHHHHhc---------CCCcEEEECCC-------------------CccHHHHHcCCCCCHHHHHHH
Q ss_pred HHh
Q 028080 188 LAE 190 (214)
Q Consensus 188 l~~ 190 (214)
|..
T Consensus 105 i~~ 107 (287)
T PRK13057 105 IAT 107 (287)
T ss_pred HHc
No 76
>PTZ00378 hypothetical protein; Provisional
Probab=32.27 E-value=74 Score=30.93 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=33.8
Q ss_pred eecCchHHH-HHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHh
Q 028080 81 LTCRFFSAR-KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 130 (214)
Q Consensus 81 i~~~~m~~R-k~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql 130 (214)
++.+|+... +-..++.+....++ +++++=|.-+||+.|..++..+.+-
T Consensus 374 ivGDDL~vT~n~~ri~~gi~~~~~--NaiLIK~NQIGTlSEtieav~lA~~ 422 (518)
T PTZ00378 374 LSGVDVYARSEYKKVESGLRGLWT--SNIVLNPCAIGTLSDVVEIVRAVGE 422 (518)
T ss_pred EECCCcCcCCCHHHHHHHHhcCCC--ceEEEccccceeHHHHHHHHHHHHH
Confidence 344555444 34444444444455 9999999999999999999998764
No 77
>PRK08813 threonine dehydratase; Provisional
Probab=32.08 E-value=1.4e+02 Score=27.43 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=38.8
Q ss_pred cHHHHHH-HHHHhhhhHHHHHhcC-CcEEEecCcccHHHHHHHHHHhcCCcEEEEecC
Q 028080 5 HPHYLQS-FELGGEARHLQIARLL-DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60 (214)
Q Consensus 5 ~~~y~~A-~~LG~~~~~~~lA~~~-~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~ 60 (214)
||..... ..+|.+ |.+.. ..+|+..|+.|+...++++.++.+-++|||-|.
T Consensus 161 np~~i~G~~Tig~E-----I~e~~pD~VvvpvGgGGliaGia~~lk~~~~rVigVqpe 213 (349)
T PRK08813 161 DPDVIAGQGTVGIE-----LAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVE 213 (349)
T ss_pred ChHHHHHHHHHHHH-----HHcCCCCEEEEEeCccHHHHHHHHHHhcCCCEEEEEEEC
Confidence 4544454 467877 66543 677888888899999999999888899999763
No 78
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.82 E-value=90 Score=25.79 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=10.7
Q ss_pred cEEEEeCCCCCCHHH
Q 028080 106 TAVVALPGGVGTLDE 120 (214)
Q Consensus 106 Da~I~lPGG~GTLeE 120 (214)
| +|+--+|.||.-|
T Consensus 82 d-lVIsHAGaGS~le 95 (170)
T KOG3349|consen 82 D-LVISHAGAGSCLE 95 (170)
T ss_pred c-EEEecCCcchHHH
Confidence 5 6677899999655
No 79
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=31.80 E-value=65 Score=27.38 Aligned_cols=12 Identities=33% Similarity=0.828 Sum_probs=9.6
Q ss_pred cEEEEeCCCCCCH
Q 028080 106 TAVVALPGGVGTL 118 (214)
Q Consensus 106 Da~I~lPGG~GTL 118 (214)
| .|++|||.|..
T Consensus 87 D-alviPGG~g~~ 98 (217)
T PRK11780 87 D-ALIVPGGFGAA 98 (217)
T ss_pred C-EEEECCCCchh
Confidence 5 56799999975
No 80
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=31.15 E-value=42 Score=28.77 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.0
Q ss_pred EEEeCCCCCCHHHH
Q 028080 108 VVALPGGVGTLDEM 121 (214)
Q Consensus 108 ~I~lPGG~GTLeEl 121 (214)
.|++|||.|++..|
T Consensus 99 av~iPGG~g~~~dl 112 (232)
T cd03148 99 AVFIPGGHGALIGI 112 (232)
T ss_pred EEEECCCCCChhhc
Confidence 56899999997643
No 81
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=30.90 E-value=47 Score=29.82 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=31.2
Q ss_pred eeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHh
Q 028080 80 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 130 (214)
Q Consensus 80 ~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql 130 (214)
.++.+++...+...++.++....+ +++++=|.-+||+.|..++..+.+-
T Consensus 178 ~iVGDDl~vTn~~ri~~~i~~~~~--na~llK~NQigTvte~lea~~~a~~ 226 (295)
T PF00113_consen 178 QIVGDDLFVTNPKRIKKGIEKKAC--NALLLKPNQIGTVTETLEAVKLAKS 226 (295)
T ss_dssp EEEESTTTTT-HHHHHHHHHCT----SEEEE-HHHHSSHHHHHHHHHHHHH
T ss_pred eeecccccccchhhhhccchhhhc--cchhhhhhhhHHHHHHHHHHHHHHH
Confidence 345566533333333333333344 9999999999999999999999865
No 82
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.85 E-value=92 Score=27.41 Aligned_cols=41 Identities=27% Similarity=0.707 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH-----HHHhHHHcC
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWG 164 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~g 164 (214)
|++.+|+.+.-..-. ..+.|++++. ||+++.+ |++.+.+.|
T Consensus 70 ~~~~~~~~~~~ir~~----~~~~pivlm~---Y~N~i~~~G~e~F~~~~~~aG 115 (259)
T PF00290_consen 70 TLEKIFELVKEIRKK----EPDIPIVLMT---YYNPIFQYGIERFFKEAKEAG 115 (259)
T ss_dssp -HHHHHHHHHHHHHH----CTSSEEEEEE----HHHHHHH-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcc----CCCCCEEEEe---eccHHhccchHHHHHHHHHcC
Confidence 688888877765421 1579999994 9998764 445554434
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=30.74 E-value=1.5e+02 Score=26.28 Aligned_cols=20 Identities=0% Similarity=-0.090 Sum_probs=15.0
Q ss_pred EEeCCHHHHHHHHHhhhcCC
Q 028080 176 KICDSNSEALSYLAEFYDLS 195 (214)
Q Consensus 176 ~~~~s~ee~~~~l~~~~~~~ 195 (214)
.+..|++++.+.+.+++..|
T Consensus 316 lv~~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 316 LVGTDKENITKAAKRLLTDP 335 (365)
T ss_pred EeCCCHHHHHHHHHHHHhCh
Confidence 34578999999998876544
No 84
>PRK07677 short chain dehydrogenase; Provisional
Probab=30.66 E-value=82 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=25.8
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
..+++||+.|+-.++++...+.|-.++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 568899999999999999999988877663
No 85
>PRK06180 short chain dehydrogenase; Provisional
Probab=29.98 E-value=79 Score=26.82 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=26.5
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
...++|||..|+-.++++...+.|-.|+.+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 3578999999999999999988888887764
No 86
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=28.79 E-value=87 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=29.6
Q ss_pred CchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhh
Q 028080 84 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 131 (214)
Q Consensus 84 ~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~ 131 (214)
.+-.+|-+-|.+.- + ..+.||+++.-||.|+.. +..-+.|.++.
T Consensus 45 ~s~~~Ra~dL~~a~-~--d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~ 88 (282)
T cd07025 45 GTDEERAADLNAAF-A--DPEIKAIWCARGGYGANR-LLPYLDYDLIR 88 (282)
T ss_pred CCHHHHHHHHHHHh-h--CCCCCEEEEcCCcCCHHH-hhhhCCHHHHh
Confidence 34457777666532 2 223699999999999854 55557777764
No 87
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=28.53 E-value=53 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=20.2
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.+|+|||..|++-|. .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 578899999998766 5677888887774
No 88
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=28.52 E-value=2.1e+02 Score=21.94 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhHHHHHhcCCcEEEe--cCc--ccHHHHHHHHHHhcCC
Q 028080 7 HYLQSFELGGEARHLQIARLLDCTTWS--GAG--PGLMDAVTKGAMQAGK 52 (214)
Q Consensus 7 ~y~~A~~LG~~~~~~~lA~~~~~~V~~--GG~--~GlM~ava~ga~~~gG 52 (214)
.+..|+.+|..|+..-++ .|...|+. ||. .|-+.|+++|+.++|-
T Consensus 69 n~~aa~~vG~lla~ra~~-~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 69 NVEAAYLVGELLAKRALE-KGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred CEehHHHHHHHHHHHHHH-cCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 455678888885555343 34445554 443 6999999999999884
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=28.23 E-value=2.2e+02 Score=24.22 Aligned_cols=71 Identities=10% Similarity=-0.058 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|++|.-.---|.--=++|+++. .+|+|.-+..+ ....+ ..+ . ..+...++++++.
T Consensus 268 di~v~ps~~E~~~~~~lEAma~----------G~PvI~s~~~~-~~~~i-------~~~------~-~~~~~~~~~~~~a 322 (358)
T cd03812 268 DVFLFPSLYEGLPLVLIEAQAS----------GLPCILSDTIT-KEVDL-------TDL------V-KFLSLDESPEIWA 322 (358)
T ss_pred CEEEecccccCCCHHHHHHHHh----------CCCEEEEcCCc-hhhhh-------ccC------c-cEEeCCCCHHHHH
Confidence 8776532211111225566664 58999988643 22221 111 1 2233345689999
Q ss_pred HHHHhhhcCCCccccc
Q 028080 186 SYLAEFYDLSSIDKRV 201 (214)
Q Consensus 186 ~~l~~~~~~~~~~~~~ 201 (214)
+.|.+.+..|...+..
T Consensus 323 ~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 323 EEILKLKSEDRRERSS 338 (358)
T ss_pred HHHHHHHhCcchhhhh
Confidence 9999987766644433
No 90
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.52 E-value=1.7e+02 Score=28.52 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.9
Q ss_pred EEeCCHHHHHHHHHhhhcCC
Q 028080 176 KICDSNSEALSYLAEFYDLS 195 (214)
Q Consensus 176 ~~~~s~ee~~~~l~~~~~~~ 195 (214)
..+++++|+.+.|++.+..+
T Consensus 502 ~~v~~~~el~~al~~al~~~ 521 (550)
T COG0028 502 IRVETPEELEEALEEALASD 521 (550)
T ss_pred EEeCCHHHHHHHHHHHHhCC
Confidence 56789999999999886543
No 91
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=27.44 E-value=1.7e+02 Score=22.65 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHhhhhHHHHHhcCCc-EEEe-cCc--ccHHHHHHHHHHhcC
Q 028080 10 QSFELGGEARHLQIARLLDC-TTWS-GAG--PGLMDAVTKGAMQAG 51 (214)
Q Consensus 10 ~A~~LG~~~~~~~lA~~~~~-~V~~-GG~--~GlM~ava~ga~~~g 51 (214)
.|+.+|+.++..-+.. |.. +|+- ||. -|-+.|+++||.++|
T Consensus 70 aa~~vG~~la~ra~~~-gi~~vvfDrg~~~yhGrV~a~a~~are~G 114 (117)
T PRK05593 70 AAKKVGKLIAERAKAK-GIKQVVFDRGGYKYHGRVKALADAAREAG 114 (117)
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEEcCCCCcccHHHHHHHHHHHHhC
Confidence 4678888844443333 333 3443 443 599999999999987
No 92
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.40 E-value=2.3e+02 Score=24.72 Aligned_cols=42 Identities=26% Similarity=0.657 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH-----HHHhHHHcCC
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWGT 165 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~gf 165 (214)
|++++|+.+.-..- +.++.|++++ +||+++.+ |++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~----~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIRE----KDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHh----cCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 67777776664331 1147899887 48887665 5666666553
No 93
>PRK09291 short chain dehydrogenase; Provisional
Probab=27.30 E-value=99 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=25.0
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.+++|||+.|+=.++++...+.|..|+.+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 568899999999999999888888877653
No 94
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=27.17 E-value=4e+02 Score=24.03 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=57.8
Q ss_pred hcCCcEEEecCc--ccHHHHHHHHHHhcCCcEEEEecCCcccccc-----cCCCCCCCCccceeecCchHHHHHHhHhhh
Q 028080 25 RLLDCTTWSGAG--PGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT-----ASNFHPYLPLETYLTCRFFSARKHGLIDCA 97 (214)
Q Consensus 25 ~~~~~~V~~GG~--~GlM~ava~ga~~~gG~viGIi~~~e~~e~~-----~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s 97 (214)
+.|-..|+||.. .|.---++-.|...|..-+=|.-+.+....- ..-+||+++. .+-.++-..|+++-
T Consensus 29 q~GrvgViGGc~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~------~~av~~i~k~L~Rl 102 (306)
T KOG3974|consen 29 QSGRVGVIGGCLEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQ------ENAVDIIEKLLQRL 102 (306)
T ss_pred CccceEEEcccccccCccHHHHHHHHHhccceeeeeechhHHHHHhhcCCceeecccccC------CchHhHHHHHHhhe
Confidence 343334555554 6888888999999887666554322221100 0012333331 11123334455554
Q ss_pred hhcCCCCccEEEEeCCCCC----CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccc
Q 028080 98 VRNDSCDRTAVVALPGGVG----TLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 150 (214)
Q Consensus 98 ~~~~~~~sDa~I~lPGG~G----TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w 150 (214)
+|+|+=|| .| ++.++..++.... + ..+|+|+= -+|-|
T Consensus 103 --------havVIGPG-LGRdp~~~k~i~~iley~~----~--~dvP~VID-aDGL~ 143 (306)
T KOG3974|consen 103 --------HAVVIGPG-LGRDPAILKEIAKILEYLR----G--KDVPLVID-ADGLW 143 (306)
T ss_pred --------eEEEECCC-CCCCHHHHHHHHHHHHHHh----c--CCCcEEEc-CCceE
Confidence 88888776 44 5677777776643 2 36898764 46777
No 95
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.55 E-value=1.1e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...+++||..|+=.++++...+.|-.++.+-
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 35778999999999999999988887777664
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=26.48 E-value=3.5e+02 Score=24.32 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=34.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCcc---chHHHHHHHhHHHcCCCChhhhcccEEEeCCHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF---YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~---w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~e 182 (214)
|++|.- ||.+|+.|+. . ..+|+|++-...+ .+.... .+.+.+.|.... . ..-.-+++
T Consensus 254 dlvIsr-~G~~t~~E~~---~----------~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~--l---~~~~~~~~ 313 (352)
T PRK12446 254 DFVISR-AGSNAIFEFL---T----------LQKPMLLIPLSKFASRGDQILN-AESFERQGYASV--L---YEEDVTVN 313 (352)
T ss_pred CEEEEC-CChhHHHHHH---H----------cCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEE--c---chhcCCHH
Confidence 855554 5567888864 2 2689998832100 122221 233455453211 0 01112678
Q ss_pred HHHHHHHhhhc
Q 028080 183 EALSYLAEFYD 193 (214)
Q Consensus 183 e~~~~l~~~~~ 193 (214)
++.+.+.+.+.
T Consensus 314 ~l~~~l~~ll~ 324 (352)
T PRK12446 314 SLIKHVEELSH 324 (352)
T ss_pred HHHHHHHHHHc
Confidence 88888887653
No 97
>PRK13054 lipid kinase; Reviewed
Probab=25.92 E-value=1.2e+02 Score=26.54 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=21.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 145 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln 145 (214)
| .|+.-||=||+.|+...+.-.... .+.|+.++-
T Consensus 58 d-~vvv~GGDGTl~evv~~l~~~~~~-----~~~~lgiiP 91 (300)
T PRK13054 58 A-TVIAGGGDGTINEVATALAQLEGD-----ARPALGILP 91 (300)
T ss_pred C-EEEEECCccHHHHHHHHHHhhccC-----CCCcEEEEe
Confidence 5 566889999999998766421111 135777663
No 98
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.62 E-value=2.6e+02 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=13.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHH
Q 028080 105 RTAVVALPGGVGTLDEMFEILA 126 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt 126 (214)
.|++|+++|| +.-.+.-+++
T Consensus 84 ~d~IIaiGGG--S~~D~aK~ia 103 (374)
T cd08189 84 CDAILAVGGG--SVIDCAKAIA 103 (374)
T ss_pred CCEEEEeCCc--cHHHHHHHHH
Confidence 4999999998 4444444433
No 99
>PRK10494 hypothetical protein; Provisional
Probab=25.60 E-value=1.3e+02 Score=26.23 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=8.9
Q ss_pred cEEEEeCCCC
Q 028080 106 TAVVALPGGV 115 (214)
Q Consensus 106 Da~I~lPGG~ 115 (214)
|++|+|+||.
T Consensus 80 d~IVVLGgG~ 89 (259)
T PRK10494 80 DYIVVLGGGY 89 (259)
T ss_pred CEEEEcCCCc
Confidence 9999999986
No 100
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=25.59 E-value=2.1e+02 Score=26.01 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=10.3
Q ss_pred EEEEeCCCCCC
Q 028080 107 AVVALPGGVGT 117 (214)
Q Consensus 107 a~I~lPGG~GT 117 (214)
|||.|-||.||
T Consensus 2 a~vllaGG~GT 12 (315)
T cd06424 2 VFVLVAGGLGE 12 (315)
T ss_pred EEEEecCCCcc
Confidence 79999999999
No 101
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=25.49 E-value=1.3e+02 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.4
Q ss_pred cEEEEeCCCCCCH
Q 028080 106 TAVVALPGGVGTL 118 (214)
Q Consensus 106 Da~I~lPGG~GTL 118 (214)
| .|++|||.|..
T Consensus 84 D-alviPGG~~~~ 95 (213)
T cd03133 84 D-ALIFPGGFGAA 95 (213)
T ss_pred C-EEEECCCCchh
Confidence 5 56799999874
No 102
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.16 E-value=1.2e+02 Score=25.33 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...++|||+.|+=.++++...+.|..|+.+.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICG 39 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999998887664
No 103
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=25.15 E-value=1.5e+02 Score=22.36 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEecCcccHHHHHHHHHHhcCC---cEEEEecC
Q 028080 30 TTWSGAGPGLMDAVTKGAMQAGK---PVGGFKVG 60 (214)
Q Consensus 30 ~V~~GG~~GlM~ava~ga~~~gG---~viGIi~~ 60 (214)
.|+..||-|..-.+..+....+. ..+||+|.
T Consensus 57 ~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 57 VIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp EEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred EEEEEcCccHHHHHHHHHhhcCCCccceEEEecC
Confidence 56666666666666777776654 37999984
No 104
>PRK15494 era GTPase Era; Provisional
Probab=25.11 E-value=3e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHhhhcCCCcccccccccc
Q 028080 179 DSNSEALSYLAEFYDLSSIDKRVHEVNL 206 (214)
Q Consensus 179 ~s~ee~~~~l~~~~~~~~~~~~~~~~~~ 206 (214)
.+.+++++.|.++ .|+.+..|.++..
T Consensus 202 ~gv~eL~~~L~~~--l~~~~~~~~~~~~ 227 (339)
T PRK15494 202 KNIDGLLEYITSK--AKISPWLYAEDDI 227 (339)
T ss_pred cCHHHHHHHHHHh--CCCCCCCCCCCCC
Confidence 4689999999987 4677777766543
No 105
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=24.73 E-value=32 Score=20.60 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHhHHHcCCCChhhhcccEEEe-CCHHHHHHHH
Q 028080 157 LGDCEDWGTVAKDEVASLWKIC-DSNSEALSYL 188 (214)
Q Consensus 157 l~~~~~~gfi~~~~~~~~i~~~-~s~ee~~~~l 188 (214)
++.+.+-||-.. .....+..+ .+++.++++|
T Consensus 6 v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 6 VQQLMEMGFSRE-QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHhC
Confidence 445555588443 455555555 4778877765
No 106
>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.
Probab=24.73 E-value=90 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHcCCCChhh-hcccEEEeCCHHHHHHHHHhhhcCCCc
Q 028080 152 KLLDFLGDCEDWGTVAKDE-VASLWKICDSNSEALSYLAEFYDLSSI 197 (214)
Q Consensus 152 ~l~~~l~~~~~~gfi~~~~-~~~~i~~~~s~ee~~~~l~~~~~~~~~ 197 (214)
..+..++.+.+.|++...- |+.++ ..=-+|-+++|++|+..|+.
T Consensus 39 ~V~k~mqSL~SrgyVke~faWrh~Y--w~LT~eGIeyLR~yL~LP~e 83 (95)
T PF03501_consen 39 HVIKAMQSLKSRGYVKEQFAWRHYY--WYLTNEGIEYLREYLHLPAE 83 (95)
T ss_dssp HHHHHHHHHHHCTSEEEEECTTEEE--EEE-HHHHHHHHHHC-SSTT
T ss_pred HHHHHHhcccchhhhcCeecceEEE--EEEcchhHHHHHHHhCCChh
Confidence 5677888899999987532 33332 23346889999999887763
No 107
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=24.13 E-value=1.8e+02 Score=24.41 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=36.1
Q ss_pred cEEEEeCC-----CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCC
Q 028080 106 TAVVALPG-----GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180 (214)
Q Consensus 106 Da~I~lPG-----G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s 180 (214)
|++|.... |.+.-.=+.|+++. .+|+|..+..+. ..++ .++ .. ..+.-.+|
T Consensus 296 di~i~~~~~~~~~~~~~p~~~~Ea~~~----------G~pvi~~~~~~~-~~~~-------~~~-----~~-g~~~~~~~ 351 (394)
T cd03794 296 DVGLVPLKPGPAFEGVSPSKLFEYMAA----------GKPVLASVDGES-AELV-------EEA-----GA-GLVVPPGD 351 (394)
T ss_pred CeeEEeccCcccccccCchHHHHHHHC----------CCcEEEecCCCc-hhhh-------ccC-----Cc-ceEeCCCC
Confidence 87775433 22223335566664 579998876432 2211 111 01 12222358
Q ss_pred HHHHHHHHHhhhcCCC
Q 028080 181 NSEALSYLAEFYDLSS 196 (214)
Q Consensus 181 ~ee~~~~l~~~~~~~~ 196 (214)
++++.+.|.+.+..+.
T Consensus 352 ~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 352 PEALAAAILELLDDPE 367 (394)
T ss_pred HHHHHHHHHHHHhChH
Confidence 8999999988764343
No 108
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.13 E-value=1.3e+02 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...+++||+.|+=.++++-..+.|-.|+++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999999999888887764
No 109
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.12 E-value=1.5e+02 Score=25.90 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=30.7
Q ss_pred HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC
Q 028080 11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60 (214)
Q Consensus 11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~ 60 (214)
|.++.+. .++.+.-+|+..||-|..-.++.+.... +..+||+|.
T Consensus 53 ~~~~a~~-----~~~~~~d~vvv~GGDGTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 53 ARHLVAA-----ALAKGTDALVVVGGDGVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHH-----HHhcCCCEEEEECCchHHHHHhHHhccC-CCcEEEEeC
Confidence 5666666 6555444677778888888888887643 356999983
No 110
>PRK06182 short chain dehydrogenase; Validated
Probab=24.10 E-value=1.3e+02 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.7
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
..+++|||+.|+=.++++...+.|-.|+++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999999999999988888887764
No 111
>PRK08264 short chain dehydrogenase; Validated
Probab=24.07 E-value=1.3e+02 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCC-cEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGK-PVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG-~viGIi 58 (214)
..++++||..|+=.++++...+.|- .|+.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 5789999999999999999999987 776654
No 112
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.99 E-value=1.2e+02 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEE
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF 57 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGI 57 (214)
+-.+++|||+.|+=.++++...+.|..|+.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 4578999999999999999999999888765
No 113
>PRK08589 short chain dehydrogenase; Validated
Probab=23.60 E-value=1.3e+02 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..+++|||+.|+=.++++...+.|..|+.+-
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~ 37 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVD 37 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34778999999999999999999998887764
No 114
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=23.56 E-value=4.6e+02 Score=22.29 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=24.4
Q ss_pred HHhcCCcEEEecCcccHHHHHHHHHHhcCCc
Q 028080 23 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKP 53 (214)
Q Consensus 23 lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~ 53 (214)
++++ .-.|++=-..=-|.-++++++..||.
T Consensus 4 ~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~ 33 (242)
T cd01170 4 LREK-KPLVHCITNYVVMNFVANVLLAIGAS 33 (242)
T ss_pred hhhC-CCeEEEccchhhHhHHHHHHHHhCCc
Confidence 5666 67777777788899999999999984
No 115
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.48 E-value=1.3e+02 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=27.2
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+-..++|||+.|+=.++++...+.|..|+.+-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLS 39 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 34779999999999999999999998877653
No 116
>PRK12367 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.5e+02 Score=25.09 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=27.3
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
-..++|||+.|+=.+.++...+.|..|+.+-
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4779999999999999999999998887764
No 117
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=23.19 E-value=3.5e+02 Score=23.26 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=27.1
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccc
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 150 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w 150 (214)
-+.|+|+||. |...+++.|+-.... ++..=+.+.+++.+.+|
T Consensus 34 ~~~i~lsgGs-tP~~~y~~L~~~~~~--~~i~w~~v~~f~~DEr~ 75 (259)
T TIGR00502 34 PFVLGLPTGG-TPIGTYKQLIELHQA--GKISFQNVTTFNMDEYA 75 (259)
T ss_pred ceEEEEcCCC-ChHHHHHHHHHHhhc--cCCchhHeEEEeCeecC
Confidence 4689999994 777777777643110 11012567888888887
No 118
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=23.16 E-value=5.1e+02 Score=22.59 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=27.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCC
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT 165 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf 165 (214)
|++|.- ||.+|+.|. +. ..+|++++...+.++.... .+.+.+.|.
T Consensus 249 d~vI~~-~G~~t~~Ea---~~----------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 249 ELVITH-GGFSLISEA---LS----------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred CEEEEC-CChHHHHHH---HH----------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 876665 677897773 33 2689999886655554332 233444453
No 119
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.14 E-value=1.3e+02 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..+++|||+.|+=.++++...+.|-.|+.+-
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999888887774
No 120
>PRK13059 putative lipid kinase; Reviewed
Probab=22.93 E-value=1.2e+02 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=0.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHH
Q 028080 108 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 157 (214)
Q Consensus 108 ~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l 157 (214)
.|+.-||=||+.|+...+..... +.|+.++ +-|=.+.+-..|
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~-------~~~lgvi-P~GTgNdfAr~l 100 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNI-------DLPIGIL-PVGTANDFAKFL 100 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCC-------CCcEEEE-CCCCHhHHHHHh
No 121
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=22.92 E-value=2.2e+02 Score=25.66 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=32.5
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC-----CccchHHHHHHHh
Q 028080 105 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 159 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~-----~g~w~~l~~~l~~ 159 (214)
.|+||++=| .=||+|.+..+.+. +. .+|||||-+. ....|...++.+.
T Consensus 79 ~dGiVVtHG-TDTmeeTA~~L~~~-l~-----~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 79 YDGFVITHG-TDTMEETAYFLSLT-LE-----NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred cCcEEEEcC-cccHHHHHHHHHHH-hc-----CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 499998865 78999999888863 21 3799999864 2234444444444
No 122
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=22.75 E-value=88 Score=29.11 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=25.3
Q ss_pred HhcCCcEEEecCccc----HHHHHHHHHHhcCCcEE
Q 028080 24 ARLLDCTTWSGAGPG----LMDAVTKGAMQAGKPVG 55 (214)
Q Consensus 24 A~~~~~~V~~GG~~G----lM~ava~ga~~~gG~vi 55 (214)
|+.|-..+++|.+.| +||..|.-|+.+||.++
T Consensus 189 akGGKIGLFGGAGVGKTVlImELINNiAKaHGGySV 224 (521)
T KOG1350|consen 189 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSV 224 (521)
T ss_pred ccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEE
Confidence 444445578888887 89999999999999664
No 123
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.49 E-value=2.5e+02 Score=25.72 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEe
Q 028080 4 DHPHYLQSFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 4 ~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi 58 (214)
+|..++-.+-|+.. +.+.-.++|-.||- .=--.+.+-.|...|=+.+.+.
T Consensus 46 GNK~RKLefll~ea-----l~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~il 96 (323)
T COG2515 46 GNKIRKLEFLLGEA-----LRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLIL 96 (323)
T ss_pred ccHHHHHHHHHhhh-----hhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEE
Confidence 34555556777777 77764455555555 4667777888888887777775
No 124
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=22.43 E-value=2.2e+02 Score=24.07 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhHHHHHhcCCcEEE-ecCcc----cHHHHHHHHHHhcCC
Q 028080 6 PHYLQSFELGGEARHLQIARLLDCTTW-SGAGP----GLMDAVTKGAMQAGK 52 (214)
Q Consensus 6 ~~y~~A~~LG~~~~~~~lA~~~~~~V~-~GG~~----GlM~ava~ga~~~gG 52 (214)
..+..|+.+|.+++..-+++.-..+|+ -||.. |-.-|+++||.++|-
T Consensus 77 ~N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 77 GNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 456678899999555544432122222 36653 999999999999884
No 125
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.35 E-value=1.4e+02 Score=24.86 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=26.8
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
...+++||..|+=.++++...+.|-.|+.+-
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 5678999999999999999999998887764
No 126
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=22.33 E-value=2.1e+02 Score=26.02 Aligned_cols=19 Identities=5% Similarity=-0.230 Sum_probs=13.9
Q ss_pred EeCCHHHHHHHHHhhhcCC
Q 028080 177 ICDSNSEALSYLAEFYDLS 195 (214)
Q Consensus 177 ~~~s~ee~~~~l~~~~~~~ 195 (214)
-.-+++.+.+.+.+++..+
T Consensus 330 ~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 330 EECTPHPLAIALLLLLENG 348 (385)
T ss_pred CCCCHHHHHHHHHHHhcCC
Confidence 3457899999998886543
No 127
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=22.28 E-value=1.4e+02 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.9
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...++|||..|+=.++++...+.|-.|+++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEec
Confidence 45789999999999999999999998888763
No 128
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=22.21 E-value=2e+02 Score=25.98 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=13.4
Q ss_pred ccEEEEeCCCCCCHHHHHHHHH
Q 028080 105 RTAVVALPGGVGTLDEMFEILA 126 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt 126 (214)
.|++|+++|| +.-.+.-+++
T Consensus 81 ~D~IIaiGGG--SviD~aK~ia 100 (355)
T TIGR03405 81 CDLVIALGGG--SVIDTAKVLA 100 (355)
T ss_pred CCEEEEeCCc--cHHHHHHHHH
Confidence 3999999998 4444444433
No 129
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=22.18 E-value=5.6e+02 Score=22.73 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~ 185 (214)
|+|| --||.||+.|.. . ..+|++++-. +.|.. ..-+.+.+.|.-.. . + .-.-+++++.
T Consensus 306 d~~I-~hgG~~t~~eal---~----------~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~--l-~--~~~~~~~~l~ 363 (401)
T cd03784 306 AAVV-HHGGAGTTAAAL---R----------AGVPQLVVPF--FGDQP-FWAARVAELGAGPA--L-D--PRELTAERLA 363 (401)
T ss_pred heee-ecCCchhHHHHH---H----------cCCCEEeeCC--CCCcH-HHHHHHHHCCCCCC--C-C--cccCCHHHHH
Confidence 7666 677789988853 3 2689999853 33422 22344555553211 1 0 0113678888
Q ss_pred HHHHhhh
Q 028080 186 SYLAEFY 192 (214)
Q Consensus 186 ~~l~~~~ 192 (214)
+.+++.+
T Consensus 364 ~al~~~l 370 (401)
T cd03784 364 AALRRLL 370 (401)
T ss_pred HHHHHHh
Confidence 8787764
No 130
>PRK08303 short chain dehydrogenase; Provisional
Probab=22.07 E-value=1.3e+02 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.023 Sum_probs=26.5
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEE
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF 57 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGI 57 (214)
+-.+++|||+.|+=.++++...+.|..|+-+
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~ 38 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGATVYVT 38 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3578999999999999999999998877654
No 131
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=21.93 E-value=2.1e+02 Score=25.77 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=20.4
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEE
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVG 55 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~vi 55 (214)
.+++.|++.+-|+++.......|.++.
T Consensus 58 v~~~~gsgT~a~ea~~~nl~~~~~~~l 84 (349)
T TIGR01364 58 VLFLQGGATGQFAAVPLNLLAEGKVAD 84 (349)
T ss_pred EEEEcCCchHHHHHHHHhcCCCCCeEE
Confidence 445668899999999998876555543
No 132
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=21.93 E-value=5.2e+02 Score=23.52 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=37.5
Q ss_pred ccEEEEe-CC--CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCH
Q 028080 105 RTAVVAL-PG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 181 (214)
Q Consensus 105 sDa~I~l-PG--G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ 181 (214)
+|++|.+ +. |.|--.-++|+++. .+|||..+..+ ... +++++ .. . + +++|+
T Consensus 315 aDv~v~~~~~~~~~~~p~~~~Eama~----------G~PVI~s~~~~-~~e-------iv~~~-----~~-G-~-lv~d~ 368 (415)
T cd03816 315 ADLGVSLHTSSSGLDLPMKVVDMFGC----------GLPVCALDFKC-IDE-------LVKHG-----EN-G-L-VFGDS 368 (415)
T ss_pred CCEEEEccccccccCCcHHHHHHHHc----------CCCEEEeCCCC-HHH-------HhcCC-----CC-E-E-EECCH
Confidence 3999853 21 23333346666664 57999887532 322 33322 11 2 2 23789
Q ss_pred HHHHHHHHhhhcC
Q 028080 182 SEALSYLAEFYDL 194 (214)
Q Consensus 182 ee~~~~l~~~~~~ 194 (214)
+++.+.|.+.+..
T Consensus 369 ~~la~~i~~ll~~ 381 (415)
T cd03816 369 EELAEQLIDLLSN 381 (415)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 133
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.64 E-value=1.5e+02 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=27.8
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...+++||..|+-.++++-..+.|-.|+++.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999999999999999988887765
No 134
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.62 E-value=1.4e+02 Score=26.42 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
| +|+.-||=||+.+... +. . ..+||+-+|.
T Consensus 59 d-~vi~iGGDGTlL~a~~-~~-------~--~~~pi~gIn~ 88 (277)
T PRK03708 59 D-FIIAIGGDGTILRIEH-KT-------K--KDIPILGINM 88 (277)
T ss_pred C-EEEEEeCcHHHHHHHH-hc-------C--CCCeEEEEeC
Confidence 7 5556688999998765 21 1 2689998886
No 135
>PRK05693 short chain dehydrogenase; Provisional
Probab=21.58 E-value=1.3e+02 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.0
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.+++|||+.|+=.++++...+.|-.|+.+.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATA 32 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEe
Confidence 468899999999999999988888877664
No 136
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.50 E-value=2e+02 Score=24.35 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=36.9
Q ss_pred cEEEEeC----CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCH
Q 028080 106 TAVVALP----GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 181 (214)
Q Consensus 106 Da~I~lP----GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ 181 (214)
|++|... .|+|.- +.|+++. .+|+|.-+..+..+.+.. .+ .. ..+.-.+|+
T Consensus 265 d~~i~ps~~~~e~~g~~--~~Ea~~~----------g~Pvi~~~~~~~~~~i~~-------~~-----~~-g~~~~~~d~ 319 (357)
T cd03795 265 DVFVFPSVERSEAFGIV--LLEAMAF----------GKPVISTEIGTGGSYVNL-------HG-----VT-GLVVPPGDP 319 (357)
T ss_pred CEEEeCCcccccccchH--HHHHHHc----------CCCEEecCCCCchhHHhh-------CC-----Cc-eEEeCCCCH
Confidence 9887542 455542 4455554 589998775443322211 01 11 222334689
Q ss_pred HHHHHHHHhhhcCCC
Q 028080 182 SEALSYLAEFYDLSS 196 (214)
Q Consensus 182 ee~~~~l~~~~~~~~ 196 (214)
+++.+.|.+.+..|.
T Consensus 320 ~~~~~~i~~l~~~~~ 334 (357)
T cd03795 320 AALAEAIRRLLEDPE 334 (357)
T ss_pred HHHHHHHHHHHHCHH
Confidence 999999988765443
No 137
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.48 E-value=1.4e+02 Score=24.67 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=47.9
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHH----HhhhhcCCCCccEEEEcC--CccchH--HHHHHHhHHHcCCC--Chhhhccc
Q 028080 105 RTAVVALPGGVGTLDEMFEILALI----QLERIGSELPVPFLVMNY--DSFYKK--LLDFLGDCEDWGTV--AKDEVASL 174 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt~~----ql~~~~~~~~kPiilln~--~g~w~~--l~~~l~~~~~~gfi--~~~~~~~~ 174 (214)
+|++|+.|=-.+|+.-+..=++-+ -.-... .++|+++.=. ...|.. ..+.++.+.+.|+. .|. ...
T Consensus 78 aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~--~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~--~g~ 153 (182)
T PRK07313 78 ADLFLVAPATANTIAKLAHGIADDLVTSVALALP--ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK--EGL 153 (182)
T ss_pred cCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcC--CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC--CCc
Confidence 399999999999977654211100 000111 3789987742 245553 23345556665542 221 111
Q ss_pred -------EEEeCCHHHHHHHHHhhhc
Q 028080 175 -------WKICDSNSEALSYLAEFYD 193 (214)
Q Consensus 175 -------i~~~~s~ee~~~~l~~~~~ 193 (214)
.---.++||+++++.+++.
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1224689999999998763
No 138
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=21.42 E-value=70 Score=29.67 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=19.0
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEE
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGG 56 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viG 56 (214)
..+|+|||..|++-|+. |.+.|..|+-
T Consensus 6 DVvVVG~G~aGl~AA~~--aa~~G~~V~v 32 (466)
T PRK08274 6 DVLVIGGGNAALCAALA--AREAGASVLL 32 (466)
T ss_pred CEEEECCCHHHHHHHHH--HHHCCCeEEE
Confidence 67889999999998774 3455554443
No 139
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.40 E-value=1.2e+02 Score=27.39 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred HhcCCcEEEecCcccHHHHHHHHHHhcCCcE
Q 028080 24 ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPV 54 (214)
Q Consensus 24 A~~~~~~V~~GG~~GlM~ava~ga~~~gG~v 54 (214)
--+|..+++||||.||=.+.+....+.|..+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKL 65 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeE
Confidence 3345788999999999999999999988744
No 140
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=21.27 E-value=1.1e+02 Score=28.64 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 23 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 23 lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..++-.+++|||+.|+=.++++...+.|.+|+.+.
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~ 209 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALT 209 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 433456789999999999999999999998888764
No 141
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.23 E-value=1.4e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.5
Q ss_pred cEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 29 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 29 ~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.+++|||..|+=.++++.-.+.|-.++.+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~ 33 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAIND 33 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578899999999999999888877776653
No 142
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.19 E-value=1.5e+02 Score=24.60 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=25.3
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
...+++||..|+=.++++...+.|-.|+.+-
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 5778899999998999998888887776663
No 143
>PRK06914 short chain dehydrogenase; Provisional
Probab=21.00 E-value=1.5e+02 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=25.4
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEE
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGF 57 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGI 57 (214)
-..++|||+.|+=.++++...+.|-.|+.+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~ 33 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIAT 33 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEE
Confidence 357899999999999999998888777666
No 144
>PRK06114 short chain dehydrogenase; Provisional
Probab=20.85 E-value=1.6e+02 Score=24.49 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.6
Q ss_pred cCCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 26 ~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
.+...++|||+.|+=.++++...+.|-.++.+.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~ 39 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFD 39 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 346789999999999999999999888877653
No 145
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.85 E-value=4.1e+02 Score=24.75 Aligned_cols=41 Identities=32% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHhhhhHHHHHhcC--CcEEEecCc---ccHHHHHHHHHHhcCCcEEEEe
Q 028080 12 FELGGEARHLQIARLL--DCTTWSGAG---PGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 12 ~~LG~~~~~~~lA~~~--~~~V~~GG~---~GlM~ava~ga~~~gG~viGIi 58 (214)
.+|++. +.+.| ..+|+|+.+ .|+.+.+.+.-.+.| ..+.|.
T Consensus 18 ~~l~~~-----~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~-i~~~if 63 (377)
T COG1454 18 KELGEE-----VKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAG-IEYEVF 63 (377)
T ss_pred HHHHHH-----HHhcCCCceEEEECCccccchhHHHHHHHHHhcC-CeEEEe
Confidence 456666 55321 467888776 577777777666666 334443
No 146
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.84 E-value=3.6e+02 Score=23.37 Aligned_cols=42 Identities=21% Similarity=0.585 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHH-----HHHHHhHHHcCC
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL-----LDFLGDCEDWGT 165 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l-----~~~l~~~~~~gf 165 (214)
|++.+|+.+....-. ..+.|++++. ||+++ .+|++.+.+.|.
T Consensus 70 ~~~~~~~~v~~ir~~----~~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aGv 116 (256)
T TIGR00262 70 TPEKCFELLKKVRQK----HPNIPIGLLT---YYNLIFRKGVEEFYAKCKEVGV 116 (256)
T ss_pred CHHHHHHHHHHHHhc----CCCCCEEEEE---eccHHhhhhHHHHHHHHHHcCC
Confidence 778888777654211 0367988774 77764 446667766663
No 147
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=20.77 E-value=93 Score=26.64 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=23.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 152 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~ 152 (214)
|++|..-+.+| +|++.+ .||+++++. .||+.
T Consensus 201 ~~VvtinStvG-----lEAll~----------gkpVi~~G~-~~Y~~ 231 (269)
T PF05159_consen 201 DAVVTINSTVG-----LEALLH----------GKPVIVFGR-AFYAG 231 (269)
T ss_pred CEEEEECCHHH-----HHHHHc----------CCceEEecC-cccCC
Confidence 99999999876 344443 689999985 57764
No 148
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.68 E-value=1.5e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=25.8
Q ss_pred CcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
..+++|||+.|+=.++++...+.|..|+.+-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678899999998999999888888887764
No 149
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=20.68 E-value=2e+02 Score=24.32 Aligned_cols=17 Identities=0% Similarity=-0.123 Sum_probs=13.0
Q ss_pred eCCHHHHHHHHHhhhcC
Q 028080 178 CDSNSEALSYLAEFYDL 194 (214)
Q Consensus 178 ~~s~ee~~~~l~~~~~~ 194 (214)
.+|++++.+.|...+..
T Consensus 318 ~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 318 PGDPAALAEAIRRLLAD 334 (366)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 36789999999887643
No 150
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.62 E-value=4.7e+02 Score=21.78 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=20.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080 105 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 146 (214)
Q Consensus 105 sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~ 146 (214)
.|++|+.|.......+....+. . .+.|+|+++.
T Consensus 56 vdgiii~~~~~~~~~~~i~~~~-----~----~~iPvV~~~~ 88 (272)
T cd06313 56 WDFIAVDPLGIGTLTEAVQKAI-----A----RGIPVIDMGT 88 (272)
T ss_pred CCEEEEcCCChHHhHHHHHHHH-----H----CCCcEEEeCC
Confidence 3999998865544455432221 1 2579988874
No 151
>PRK05717 oxidoreductase; Validated
Probab=20.60 E-value=1.6e+02 Score=24.43 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=27.2
Q ss_pred cCCcEEEecCcccHHHHHHHHHHhcCCcEEEE
Q 028080 26 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF 57 (214)
Q Consensus 26 ~~~~~V~~GG~~GlM~ava~ga~~~gG~viGI 57 (214)
.+..+++|||..|+=.++++...+.|..|+.+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 34578999999999999999999998887766
No 152
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.56 E-value=5.8e+02 Score=23.49 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=9.6
Q ss_pred ccEEEEeCCCC
Q 028080 105 RTAVVALPGGV 115 (214)
Q Consensus 105 sDa~I~lPGG~ 115 (214)
.|++|+++||.
T Consensus 107 ~D~IiavGGGS 117 (395)
T PRK15454 107 CDGVIAFGGGS 117 (395)
T ss_pred cCEEEEeCChH
Confidence 49999999984
No 153
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.50 E-value=1.6e+02 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+..+++|||..|+=.++++...+.|-.|+.+-
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999988877653
No 154
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=20.44 E-value=2.4e+02 Score=25.50 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=27.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEc---CCccchHHHHHHHhH
Q 028080 106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---YDSFYKKLLDFLGDC 160 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln---~~g~w~~l~~~l~~~ 160 (214)
=++|+|-||.||= ++.. .+||++=++ ...+++-.++.+..+
T Consensus 16 va~viLaGG~GTR-----------Lg~~---~PK~l~pv~~~~~k~ll~~~~e~l~~l 59 (323)
T cd04193 16 VAVLLLAGGQGTR-----------LGFD---GPKGMFPVGLPSKKSLFQLQAERILKL 59 (323)
T ss_pred EEEEEECCCcccc-----------cCCC---CCeEEEEecCCCCCcHHHHHHHHHHHH
Confidence 4799999999993 2221 378887664 245777666666554
No 155
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=20.34 E-value=5.5e+02 Score=22.51 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=37.5
Q ss_pred cEEEEeCC--CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHH
Q 028080 106 TAVVALPG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 183 (214)
Q Consensus 106 Da~I~lPG--G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee 183 (214)
|++|.-.- |+| -=++|+++. .+|||..++.+-...+ +..|. . ..+.-.+|+++
T Consensus 259 d~~v~~s~~Egf~--~~~lEAma~----------G~Pvv~s~~~~g~~ei-------v~~~~-----~-G~lv~~~d~~~ 313 (359)
T PRK09922 259 SALLLTSKFEGFP--MTLLEAMSY----------GIPCISSDCMSGPRDI-------IKPGL-----N-GELYTPGNIDE 313 (359)
T ss_pred cEEEECCcccCcC--hHHHHHHHc----------CCCEEEeCCCCChHHH-------ccCCC-----c-eEEECCCCHHH
Confidence 88875433 233 224555554 6899998832333332 22221 1 22223478999
Q ss_pred HHHHHHhhhcCCC
Q 028080 184 ALSYLAEFYDLSS 196 (214)
Q Consensus 184 ~~~~l~~~~~~~~ 196 (214)
+.+.|.+++..|.
T Consensus 314 la~~i~~l~~~~~ 326 (359)
T PRK09922 314 FVGKLNKVISGEV 326 (359)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999876554
No 156
>PHA03359 UL17 tegument protein; Provisional
Probab=20.29 E-value=53 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHH
Q 028080 106 TAVVALPGGVGTLDEMFEILAL 127 (214)
Q Consensus 106 Da~I~lPGG~GTLeEl~e~lt~ 127 (214)
+++|+|||||+----+.+-+.|
T Consensus 649 ~~~vVfPGGF~~~~~~a~~l~w 670 (686)
T PHA03359 649 HALVVFPGGFALEADAAAHLVW 670 (686)
T ss_pred CEEEEecCcceEEeehHHhcCC
Confidence 8999999999854333333333
No 157
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=20.13 E-value=2.8e+02 Score=20.89 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCC--HHHHHHHHH
Q 028080 117 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS--NSEALSYLA 189 (214)
Q Consensus 117 TLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s--~ee~~~~l~ 189 (214)
+++-+-.++...|-..-. .-+-+.++|...+++.+++.+..+. +++ ..+.+.++++ .+++.+.+.
T Consensus 79 ~~~~lk~~~~~~~~~yp~--~l~~i~ivn~p~~~~~~~~~~~~~l-----~~~-~~~ki~~~~~~~~~~L~~~i~ 145 (158)
T smart00516 79 DLSVLRKILKILQDHYPE--RLGKVLIINPPWFFRVLWKIIKPFL-----DEK-TREKIRFVGNDSKEELLEYID 145 (158)
T ss_pred cHHHHHHHHHHHHHHhHH--HhCeEEEECCCHHHHHHHHHHHhhc-----Chh-hhccEEEeCCCCHHHHHhhCC
Confidence 455555555555543322 1367899999877777777665554 443 3455778876 677666653
No 158
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=20.06 E-value=1.7e+02 Score=24.47 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=27.1
Q ss_pred CCcEEEecCcccHHHHHHHHHHhcCCcEEEEe
Q 028080 27 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58 (214)
Q Consensus 27 ~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi 58 (214)
+...++|||+.|+=.++++...+.|-.|+.+-
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 36 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 35788999999999999999999998887663
Done!