Query 028081
Match_columns 214
No_of_seqs 224 out of 1303
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01128 IspD: 2-C-methyl-D-er 100.0 1.2E-47 2.6E-52 296.7 19.1 207 1-209 14-221 (221)
2 COG1211 IspD 4-diphosphocytidy 100.0 5.2E-44 1.1E-48 275.1 23.4 209 1-209 18-228 (230)
3 PLN02728 2-C-methyl-D-erythrit 100.0 2.6E-42 5.6E-47 273.1 23.1 210 1-210 38-247 (252)
4 PRK13385 2-C-methyl-D-erythrit 100.0 8.3E-39 1.8E-43 251.6 24.7 210 1-212 16-228 (230)
5 PRK00155 ispD 2-C-methyl-D-ery 100.0 4.1E-36 9E-41 235.8 24.4 211 1-212 17-227 (227)
6 TIGR00453 ispD 2-C-methyl-D-er 100.0 3.1E-35 6.8E-40 229.3 23.6 205 1-207 13-217 (217)
7 PRK09382 ispDF bifunctional 2- 100.0 3.7E-34 8E-39 238.0 21.6 196 1-209 19-214 (378)
8 cd02516 CDP-ME_synthetase CDP- 100.0 1.6E-33 3.4E-38 219.8 23.2 202 1-203 14-218 (218)
9 TIGR00466 kdsB 3-deoxy-D-manno 99.9 2E-25 4.4E-30 176.1 17.1 189 6-201 15-238 (238)
10 COG1212 KdsB CMP-2-keto-3-deox 99.9 2.6E-25 5.7E-30 167.6 16.5 202 1-210 12-245 (247)
11 COG1083 NeuA CMP-N-acetylneura 99.9 6.7E-25 1.4E-29 164.2 13.6 194 5-211 18-226 (228)
12 COG1207 GlmU N-acetylglucosami 99.9 1.7E-24 3.7E-29 176.8 16.8 209 1-212 16-247 (460)
13 TIGR03584 PseF pseudaminic aci 99.9 3.9E-24 8.3E-29 167.0 16.1 189 6-208 15-221 (222)
14 cd02513 CMP-NeuAc_Synthase CMP 99.9 6.2E-23 1.3E-27 160.4 14.3 188 6-207 17-223 (223)
15 PLN02917 CMP-KDO synthetase 99.9 7.1E-22 1.5E-26 160.0 18.7 199 6-213 63-293 (293)
16 COG2068 Uncharacterized MobA-r 99.9 5.1E-21 1.1E-25 143.3 16.5 174 5-208 21-198 (199)
17 cd02517 CMP-KDO-Synthetase CMP 99.9 2.2E-20 4.9E-25 147.6 18.9 202 1-206 10-239 (239)
18 PRK13368 3-deoxy-manno-octulos 99.9 4.6E-20 1E-24 145.7 19.1 201 1-207 11-238 (238)
19 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.8E-20 6E-25 146.0 17.4 198 1-200 12-229 (229)
20 PRK14356 glmU bifunctional N-a 99.8 2.2E-19 4.7E-24 154.5 17.1 206 1-210 19-246 (456)
21 PRK05450 3-deoxy-manno-octulos 99.8 9.6E-19 2.1E-23 138.7 19.3 202 1-207 11-244 (245)
22 PRK14354 glmU bifunctional N-a 99.8 1E-18 2.2E-23 150.5 18.9 204 1-209 16-241 (458)
23 PRK14353 glmU bifunctional N-a 99.8 8.3E-19 1.8E-23 150.5 17.7 208 1-210 19-245 (446)
24 TIGR01173 glmU UDP-N-acetylglu 99.8 4.3E-18 9.2E-23 146.3 19.2 206 1-209 14-237 (451)
25 cd04182 GT_2_like_f GT_2_like_ 99.8 4.2E-18 9.1E-23 129.2 17.1 168 6-201 17-186 (186)
26 PRK14359 glmU bifunctional N-a 99.8 3.3E-18 7.2E-23 146.1 17.6 201 1-210 16-236 (430)
27 PRK14360 glmU bifunctional N-a 99.8 4.1E-18 8.8E-23 146.4 16.9 204 1-209 15-238 (450)
28 cd02518 GT2_SpsF SpsF is a gly 99.8 1.7E-17 3.6E-22 130.8 17.9 179 6-208 15-203 (233)
29 TIGR03202 pucB xanthine dehydr 99.8 1.4E-17 3E-22 127.2 16.4 171 1-200 14-190 (190)
30 PRK00317 mobA molybdopterin-gu 99.8 3.6E-17 7.7E-22 125.3 18.6 169 4-206 19-192 (193)
31 PRK14352 glmU bifunctional N-a 99.8 1.7E-17 3.6E-22 143.8 18.1 198 1-200 18-236 (482)
32 TIGR03310 matur_ygfJ molybdenu 99.8 1.8E-17 3.8E-22 126.2 15.9 168 5-202 15-187 (188)
33 cd02503 MobA MobA catalyzes th 99.8 4E-17 8.6E-22 123.7 17.2 92 6-106 17-109 (181)
34 TIGR02665 molyb_mobA molybdopt 99.8 5.2E-17 1.1E-21 123.6 17.6 100 5-111 17-118 (186)
35 PRK02726 molybdopterin-guanine 99.7 1.6E-16 3.6E-21 122.3 17.5 169 1-206 21-197 (200)
36 PRK14355 glmU bifunctional N-a 99.7 2.2E-16 4.9E-21 136.0 19.7 206 1-209 17-244 (459)
37 COG1861 SpsF Spore coat polysa 99.7 9.3E-16 2E-20 115.8 15.4 182 1-209 12-206 (241)
38 PRK14489 putative bifunctional 99.7 1.6E-15 3.4E-20 126.8 18.3 173 4-208 21-198 (366)
39 PRK14358 glmU bifunctional N-a 99.7 2.3E-15 4.9E-20 130.3 17.1 205 1-210 21-247 (481)
40 cd06915 NTP_transferase_WcbM_l 99.7 3.4E-15 7.3E-20 116.4 15.6 190 4-204 18-223 (223)
41 TIGR01208 rmlA_long glucose-1- 99.7 9.3E-15 2E-19 121.9 18.5 202 3-210 18-237 (353)
42 COG1209 RfbA dTDP-glucose pyro 99.7 9.6E-15 2.1E-19 113.9 16.4 200 3-209 19-237 (286)
43 cd02538 G1P_TT_short G1P_TT_sh 99.7 3E-14 6.5E-19 112.7 19.2 200 4-208 20-238 (240)
44 PRK14357 glmU bifunctional N-a 99.7 1.3E-14 2.8E-19 124.7 18.2 196 1-209 14-231 (448)
45 PRK14490 putative bifunctional 99.6 2E-14 4.4E-19 120.4 18.7 177 1-211 188-367 (369)
46 PRK00576 molybdopterin-guanine 99.6 2.5E-14 5.4E-19 108.2 17.0 100 1-110 1-104 (178)
47 PRK00560 molybdopterin-guanine 99.6 2E-14 4.4E-19 110.3 16.6 165 4-210 23-194 (196)
48 PRK09451 glmU bifunctional N-a 99.6 2.5E-14 5.3E-19 123.3 17.4 199 1-204 19-242 (456)
49 cd04189 G1P_TT_long G1P_TT_lon 99.6 4.9E-14 1.1E-18 111.1 17.5 198 3-208 19-234 (236)
50 PF02348 CTP_transf_3: Cytidyl 99.6 4.3E-15 9.3E-20 115.7 11.3 107 1-110 8-118 (217)
51 COG0746 MobA Molybdopterin-gua 99.6 1.1E-13 2.4E-18 105.4 18.0 169 5-205 19-190 (192)
52 PF12804 NTP_transf_3: MobA-li 99.6 1.8E-14 3.8E-19 106.9 13.2 104 1-111 12-116 (160)
53 TIGR01207 rmlA glucose-1-phosp 99.6 8E-14 1.7E-18 112.8 17.9 198 4-208 19-237 (286)
54 COG2266 GTP:adenosylcobinamide 99.6 7.2E-14 1.6E-18 102.3 15.7 96 5-107 17-112 (177)
55 PRK15480 glucose-1-phosphate t 99.6 1.3E-13 2.9E-18 111.8 17.8 199 4-208 23-241 (292)
56 cd02524 G1P_cytidylyltransfera 99.6 3.3E-13 7.2E-18 107.6 18.1 200 3-211 17-249 (253)
57 cd06422 NTP_transferase_like_1 99.6 2.2E-13 4.7E-18 106.4 15.5 189 4-203 19-221 (221)
58 TIGR00454 conserved hypothetic 99.5 3.2E-13 7E-18 102.4 14.3 101 5-109 17-117 (183)
59 TIGR02623 G1P_cyt_trans glucos 99.5 1.1E-12 2.4E-17 104.6 17.9 197 4-211 19-248 (254)
60 PF00483 NTP_transferase: Nucl 99.5 3.3E-13 7.1E-18 107.0 13.5 202 3-208 18-246 (248)
61 cd02523 PC_cytidylyltransferas 99.5 1.6E-12 3.4E-17 102.1 16.7 191 4-204 18-229 (229)
62 cd02541 UGPase_prokaryotic Pro 99.5 1.1E-12 2.4E-17 105.3 16.1 200 3-208 19-265 (267)
63 PRK14500 putative bifunctional 99.5 4.6E-13 9.9E-18 110.7 14.0 95 5-107 176-271 (346)
64 TIGR01105 galF UTP-glucose-1-p 99.5 1.8E-12 3.9E-17 105.4 17.1 197 3-206 22-275 (297)
65 TIGR03552 F420_cofC 2-phospho- 99.5 1.6E-13 3.4E-18 105.3 10.3 91 15-110 30-120 (195)
66 COG1213 Predicted sugar nucleo 99.5 5E-13 1.1E-17 102.5 12.9 198 2-208 18-229 (239)
67 COG1208 GCD1 Nucleoside-diphos 99.5 2.2E-12 4.9E-17 107.5 16.9 198 4-210 21-237 (358)
68 PRK13389 UTP--glucose-1-phosph 99.5 6.2E-12 1.3E-16 102.6 18.5 198 4-207 28-279 (302)
69 cd06426 NTP_transferase_like_2 99.5 1.6E-12 3.4E-17 101.4 14.3 190 3-204 17-220 (220)
70 TIGR01099 galU UTP-glucose-1-p 99.5 2.9E-12 6.2E-17 102.5 16.0 194 4-202 20-259 (260)
71 cd06428 M1P_guanylylT_A_like_N 99.4 1.6E-11 3.4E-16 98.2 18.2 198 4-206 20-256 (257)
72 cd04183 GT2_BcE_like GT2_BcbE_ 99.4 1E-11 2.2E-16 97.5 16.8 195 3-201 17-231 (231)
73 PRK05293 glgC glucose-1-phosph 99.4 1.1E-11 2.3E-16 104.5 17.4 200 4-207 23-257 (380)
74 cd06425 M1P_guanylylT_B_like_N 99.4 1.6E-11 3.6E-16 96.6 17.3 195 4-207 20-232 (233)
75 PRK10122 GalU regulator GalF; 99.4 3.3E-11 7.1E-16 98.2 18.0 198 3-207 22-276 (297)
76 TIGR02092 glgD glucose-1-phosp 99.4 1.3E-11 2.9E-16 103.6 15.7 202 3-208 21-254 (369)
77 PRK00844 glgC glucose-1-phosph 99.4 1.8E-11 3.9E-16 104.0 16.4 201 3-208 24-276 (407)
78 cd02508 ADP_Glucose_PP ADP-glu 99.3 3.7E-11 7.9E-16 92.5 13.9 164 3-194 17-200 (200)
79 cd04181 NTP_transferase NTP_tr 99.3 1.4E-10 3E-15 90.0 15.8 185 3-195 17-217 (217)
80 TIGR02091 glgC glucose-1-phosp 99.3 1.3E-10 2.8E-15 97.3 15.9 200 4-208 18-258 (361)
81 PRK02862 glgC glucose-1-phosph 99.3 1.7E-10 3.7E-15 98.7 16.3 200 3-208 22-273 (429)
82 PRK00725 glgC glucose-1-phosph 99.3 3.1E-10 6.8E-15 97.0 17.9 200 4-208 35-287 (425)
83 PLN02241 glucose-1-phosphate a 99.3 1.4E-10 3.1E-15 99.4 15.4 202 3-208 22-281 (436)
84 KOG1322 GDP-mannose pyrophosph 99.2 5.8E-09 1.3E-13 83.6 18.1 196 4-208 29-244 (371)
85 cd04198 eIF-2B_gamma_N The N-t 99.1 1.1E-09 2.5E-14 85.1 10.9 105 3-113 19-131 (214)
86 cd02509 GDP-M1P_Guanylyltransf 99.1 2.3E-09 5E-14 86.5 12.5 102 4-105 21-127 (274)
87 TIGR01479 GMP_PMI mannose-1-ph 99.0 5.1E-08 1.1E-12 84.3 16.7 102 4-106 21-129 (468)
88 cd04197 eIF-2B_epsilon_N The N 98.8 1.1E-07 2.3E-12 74.1 11.5 99 3-108 19-129 (217)
89 COG1920 Predicted nucleotidylt 98.7 5.8E-07 1.3E-11 66.9 12.8 150 16-204 32-181 (210)
90 cd02507 eIF-2B_gamma_N_like Th 98.7 1.8E-07 3.8E-12 72.9 9.7 97 3-105 19-125 (216)
91 PF01983 CofC: Guanylyl transf 98.7 7.5E-08 1.6E-12 74.4 7.1 149 16-203 32-182 (217)
92 COG1210 GalU UDP-glucose pyrop 98.6 4.8E-06 1E-10 65.7 15.0 196 4-206 24-268 (291)
93 COG4750 LicC CTP:phosphocholin 98.4 1E-06 2.2E-11 65.8 6.7 82 4-93 20-105 (231)
94 KOG1462 Translation initiation 98.3 8.4E-07 1.8E-11 72.8 4.1 103 3-110 28-139 (433)
95 COG0836 {ManC} Mannose-1-phosp 98.2 2.1E-05 4.5E-10 63.5 9.9 104 3-106 21-131 (333)
96 KOG1460 GDP-mannose pyrophosph 98.1 9.4E-06 2E-10 64.7 7.2 107 3-111 23-135 (407)
97 PRK15460 cpsB mannose-1-phosph 98.1 3.6E-05 7.9E-10 66.6 10.0 101 4-105 26-134 (478)
98 COG0448 GlgC ADP-glucose pyrop 97.4 0.0078 1.7E-07 50.3 13.2 198 4-206 25-259 (393)
99 cd02511 Beta4Glucosyltransfera 96.7 0.061 1.3E-06 42.0 12.2 91 12-109 9-99 (229)
100 KOG1461 Translation initiation 96.6 0.018 4E-07 50.7 9.5 98 3-107 43-150 (673)
101 PF09837 DUF2064: Uncharacteri 96.6 0.029 6.3E-07 39.6 8.8 96 21-120 1-97 (122)
102 cd06438 EpsO_like EpsO protein 96.4 0.15 3.3E-06 38.0 12.4 94 13-108 7-108 (183)
103 cd06439 CESA_like_1 CESA_like_ 96.1 0.11 2.4E-06 40.7 10.8 98 9-110 34-138 (251)
104 cd04180 UGPase_euk_like Eukary 96.0 0.016 3.4E-07 46.6 5.5 94 1-98 14-152 (266)
105 cd06421 CESA_CelA_like CESA_Ce 96.0 0.2 4.3E-06 38.7 11.7 96 9-108 6-111 (234)
106 cd00761 Glyco_tranf_GTA_type G 95.9 0.24 5.1E-06 34.7 11.1 90 13-106 7-102 (156)
107 cd04195 GT2_AmsE_like GT2_AmsE 95.9 0.38 8.2E-06 36.2 12.7 90 17-109 14-108 (201)
108 cd06434 GT2_HAS Hyaluronan syn 95.9 0.15 3.3E-06 39.4 10.5 91 12-108 9-104 (235)
109 PF00535 Glycos_transf_2: Glyc 95.7 0.063 1.4E-06 38.6 7.4 95 13-111 8-108 (169)
110 cd06435 CESA_NdvC_like NdvC_li 95.5 0.45 9.9E-06 36.8 11.9 93 17-110 13-113 (236)
111 cd04192 GT_2_like_e Subfamily 95.3 0.45 9.8E-06 36.4 11.2 94 13-110 7-111 (229)
112 PRK13915 putative glucosyl-3-p 95.2 0.4 8.7E-06 39.4 11.1 92 13-107 41-142 (306)
113 cd04179 DPM_DPG-synthase_like 95.0 0.31 6.8E-06 36.0 9.3 92 16-111 10-109 (185)
114 cd06427 CESA_like_2 CESA_like_ 94.9 0.9 2E-05 35.5 12.1 92 13-108 11-111 (241)
115 cd04186 GT_2_like_c Subfamily 94.7 0.64 1.4E-05 33.4 10.1 94 12-109 6-102 (166)
116 cd04184 GT2_RfbC_Mx_like Myxoc 94.6 1.2 2.5E-05 33.4 11.7 93 12-107 10-109 (202)
117 cd06423 CESA_like CESA_like is 94.6 0.9 2E-05 32.5 10.7 93 13-109 7-106 (180)
118 PRK10073 putative glycosyl tra 94.4 1.6 3.4E-05 36.2 12.9 95 13-111 16-115 (328)
119 PRK11204 N-glycosyltransferase 94.4 1.4 3.1E-05 37.6 12.9 93 13-109 64-162 (420)
120 PRK11498 bcsA cellulose syntha 94.3 1.6 3.4E-05 41.0 13.5 97 9-109 265-367 (852)
121 cd06442 DPM1_like DPM1_like re 94.3 1 2.2E-05 34.4 10.9 93 12-108 6-105 (224)
122 TIGR03469 HonB hopene-associat 94.3 0.87 1.9E-05 38.6 11.2 96 13-110 50-162 (384)
123 cd06436 GlcNAc-1-P_transferase 94.2 1.3 2.8E-05 33.4 10.9 94 12-107 6-115 (191)
124 PRK10714 undecaprenyl phosphat 94.1 2 4.2E-05 35.6 12.6 93 13-108 16-117 (325)
125 TIGR03111 glyc2_xrt_Gpos1 puta 94.0 1.9 4.2E-05 37.2 13.0 94 12-109 58-159 (439)
126 COG1215 Glycosyltransferases, 94.0 0.76 1.6E-05 39.3 10.5 94 13-110 64-166 (439)
127 cd02525 Succinoglycan_BP_ExoA 94.0 1.1 2.5E-05 34.6 10.7 95 13-111 10-111 (249)
128 cd04187 DPM1_like_bac Bacteria 93.7 2.1 4.5E-05 31.6 11.5 91 14-108 8-107 (181)
129 cd02522 GT_2_like_a GT_2_like_ 93.6 2 4.3E-05 32.7 11.3 93 13-111 9-102 (221)
130 cd06433 GT_2_WfgS_like WfgS an 93.5 1.8 4E-05 32.0 10.8 93 12-108 7-102 (202)
131 cd04185 GT_2_like_b Subfamily 93.5 2.2 4.7E-05 32.1 11.2 94 12-107 6-105 (202)
132 PF10111 Glyco_tranf_2_2: Glyc 93.5 2.8 6E-05 33.9 12.4 29 73-104 83-111 (281)
133 cd06913 beta3GnTL1_like Beta 1 93.3 1.5 3.2E-05 33.6 10.1 97 12-111 6-114 (219)
134 COG3222 Uncharacterized protei 93.2 2.7 5.9E-05 31.6 14.4 162 16-208 38-205 (211)
135 PLN02726 dolichyl-phosphate be 93.2 1.9 4E-05 33.8 10.7 96 13-111 19-123 (243)
136 cd04188 DPG_synthase DPG_synth 93.1 1.1 2.5E-05 34.0 9.2 95 13-110 7-111 (211)
137 cd02510 pp-GalNAc-T pp-GalNAc- 93.1 2.9 6.2E-05 33.9 11.9 95 13-111 8-113 (299)
138 TIGR03030 CelA cellulose synth 93.0 2.8 6.1E-05 38.7 12.9 98 9-109 136-256 (713)
139 PRK14583 hmsR N-glycosyltransf 92.8 2.6 5.6E-05 36.5 11.8 96 9-108 80-182 (444)
140 TIGR03472 HpnI hopanoid biosyn 92.8 2.8 6.1E-05 35.3 11.8 99 9-110 46-155 (373)
141 cd04196 GT_2_like_d Subfamily 92.6 2.4 5.1E-05 32.0 10.3 94 12-108 7-106 (214)
142 KOG2978 Dolichol-phosphate man 92.5 2 4.3E-05 32.7 9.1 93 14-109 17-116 (238)
143 cd02526 GT2_RfbF_like RfbF is 92.5 3.2 7E-05 31.9 11.1 89 10-103 4-97 (237)
144 COG1216 Predicted glycosyltran 92.1 2.4 5.2E-05 34.6 10.3 104 7-111 7-114 (305)
145 PTZ00339 UDP-N-acetylglucosami 91.4 0.5 1.1E-05 41.3 5.8 101 1-104 120-277 (482)
146 cd06437 CESA_CaSu_A2 Cellulose 91.4 3.9 8.4E-05 31.6 10.4 93 12-107 10-113 (232)
147 cd06420 GT2_Chondriotin_Pol_N 91.4 4.4 9.4E-05 29.7 11.0 90 13-106 7-104 (182)
148 cd04193 UDPGlcNAc_PPase UDPGlc 91.2 0.26 5.7E-06 40.8 3.7 52 1-52 29-93 (323)
149 cd02520 Glucosylceramide_synth 90.9 5.4 0.00012 29.9 11.6 93 13-108 11-113 (196)
150 PRK05454 glucosyltransferase M 90.4 13 0.00028 34.4 13.9 100 8-108 128-247 (691)
151 PTZ00260 dolichyl-phosphate be 90.3 4.1 8.9E-05 33.9 10.1 93 13-108 80-189 (333)
152 PF13704 Glyco_tranf_2_4: Glyc 89.8 2.2 4.9E-05 28.1 6.8 81 15-97 4-88 (97)
153 TIGR01556 rhamnosyltran L-rham 89.7 8.4 0.00018 30.8 11.3 90 16-109 8-101 (281)
154 PF13641 Glyco_tranf_2_3: Glyc 88.7 2.1 4.6E-05 32.8 6.9 95 13-110 11-115 (228)
155 PRK10018 putative glycosyl tra 86.4 15 0.00032 29.8 10.6 94 12-108 14-112 (279)
156 cd02514 GT13_GLCNAC-TI GT13_GL 86.2 19 0.0004 30.1 12.2 102 9-112 5-131 (334)
157 cd04191 Glucan_BSP_ModH Glucan 82.7 22 0.00049 28.3 11.8 99 8-108 3-122 (254)
158 PF09258 Glyco_transf_64: Glyc 78.4 4.4 9.6E-05 32.2 4.7 92 15-110 12-104 (247)
159 PRK14716 bacteriophage N4 adso 77.5 39 0.00084 30.0 10.6 93 12-105 75-182 (504)
160 PF13506 Glyco_transf_21: Glyc 73.7 16 0.00034 27.3 6.4 50 67-118 19-69 (175)
161 TIGR00288 conserved hypothetic 73.3 33 0.00071 25.4 7.7 30 29-58 104-133 (160)
162 TIGR00236 wecB UDP-N-acetylglu 72.0 43 0.00094 27.8 9.3 83 7-91 2-96 (365)
163 cd04190 Chitin_synth_C C-termi 70.5 49 0.0011 25.8 9.3 28 80-108 73-100 (244)
164 PF10087 DUF2325: Uncharacteri 69.2 30 0.00066 22.9 8.4 70 34-110 2-75 (97)
165 TIGR00334 5S_RNA_mat_M5 ribonu 66.7 18 0.00039 27.2 5.1 69 31-106 2-70 (174)
166 PRK10063 putative glycosyl tra 61.4 79 0.0017 24.9 11.4 84 12-99 10-100 (248)
167 COG2121 Uncharacterized protei 61.0 43 0.00093 25.9 6.3 66 32-99 68-134 (214)
168 PF00670 AdoHcyase_NAD: S-aden 58.8 73 0.0016 23.7 7.5 72 31-102 22-100 (162)
169 PF04028 DUF374: Domain of unk 57.9 46 0.001 21.1 6.8 56 35-92 14-69 (74)
170 cd06167 LabA_like LabA_like pr 49.5 92 0.002 22.0 6.8 12 31-42 100-111 (149)
171 COG0463 WcaA Glycosyltransfera 46.8 1E+02 0.0022 21.9 8.2 89 12-105 12-106 (291)
172 PRK11234 nfrB bacteriophage N4 46.3 2.6E+02 0.0055 26.3 11.5 91 13-106 73-179 (727)
173 COG0552 FtsY Signal recognitio 44.0 1.9E+02 0.0042 24.2 9.3 86 16-103 154-244 (340)
174 cd06424 UGGPase UGGPase cataly 43.9 48 0.001 27.5 4.6 52 1-52 14-76 (315)
175 PF02350 Epimerase_2: UDP-N-ac 42.9 1.4E+02 0.0031 24.9 7.5 67 24-91 2-77 (346)
176 PF01053 Cys_Met_Meta_PP: Cys/ 42.4 2.2E+02 0.0047 24.3 10.0 85 18-110 83-170 (386)
177 PF13727 CoA_binding_3: CoA-bi 40.9 45 0.00097 24.1 3.8 48 11-59 120-173 (175)
178 PRK04017 hypothetical protein; 39.3 1.4E+02 0.0031 21.3 6.2 77 18-105 9-87 (132)
179 PF01936 NYN: NYN domain; Int 38.7 97 0.0021 21.6 5.2 28 32-59 97-124 (146)
180 COG0056 AtpA F0F1-type ATP syn 38.6 2.8E+02 0.006 24.5 10.0 103 16-121 203-321 (504)
181 COG1432 Uncharacterized conser 37.9 1.4E+02 0.0031 22.4 6.1 11 31-41 111-121 (181)
182 COG0079 HisC Histidinol-phosph 34.1 2.9E+02 0.0062 23.3 9.0 95 7-108 76-176 (356)
183 KOG2862 Alanine-glyoxylate ami 33.9 2.9E+02 0.0062 23.2 8.1 69 19-91 82-153 (385)
184 COG0499 SAM1 S-adenosylhomocys 33.8 2.3E+02 0.0049 24.3 7.0 89 14-103 192-287 (420)
185 COG0381 WecB UDP-N-acetylgluco 33.5 2.3E+02 0.005 24.3 7.1 36 7-42 5-43 (383)
186 COG1658 Small primase-like pro 33.3 1.8E+02 0.0039 20.7 6.2 70 31-107 9-79 (127)
187 cd00897 UGPase_euk Eukaryotic 33.1 1.6E+02 0.0036 24.2 6.1 53 1-53 17-74 (300)
188 PF08952 DUF1866: Domain of un 31.3 1.5E+02 0.0033 21.6 5.0 34 92-125 43-76 (146)
189 KOG2547 Ceramide glucosyltrans 30.8 2.1E+02 0.0045 24.6 6.3 97 9-108 90-197 (431)
190 COG4284 UDP-glucose pyrophosph 29.9 56 0.0012 28.6 3.0 27 1-27 119-146 (472)
191 PF09419 PGP_phosphatase: Mito 29.5 2.4E+02 0.0052 21.0 6.3 39 19-57 65-109 (168)
192 COG3473 Maleate cis-trans isom 29.2 2.8E+02 0.0061 21.7 9.0 82 20-104 108-201 (238)
193 KOG0799 Branching enzyme [Carb 27.0 4.3E+02 0.0093 23.1 9.3 90 15-107 115-219 (439)
194 PF13632 Glyco_trans_2_3: Glyc 26.7 1.3E+02 0.0028 22.1 4.3 24 83-107 1-24 (193)
195 PRK05647 purN phosphoribosylgl 26.6 2.9E+02 0.0064 21.1 8.1 85 13-101 10-100 (200)
196 PF02641 DUF190: Uncharacteriz 26.4 1.1E+02 0.0025 20.4 3.6 28 11-39 15-42 (101)
197 TIGR02990 ectoine_eutA ectoine 25.7 3.4E+02 0.0073 21.5 8.7 82 19-103 109-202 (239)
198 TIGR00639 PurN phosphoribosylg 25.7 3E+02 0.0065 20.8 9.7 85 13-101 9-99 (190)
199 PLN02285 methionyl-tRNA formyl 25.6 4E+02 0.0086 22.2 7.6 96 2-100 2-112 (334)
200 PRK05967 cystathionine beta-ly 25.3 4.4E+02 0.0094 22.6 11.2 93 13-113 87-182 (395)
201 PF15647 Tox-REase-3: Restrict 25.1 1.1E+02 0.0023 20.7 3.0 53 4-58 52-104 (109)
202 COG2179 Predicted hydrolase of 24.9 3E+02 0.0066 20.7 6.7 56 33-91 64-119 (175)
203 PF13712 Glyco_tranf_2_5: Glyc 24.7 3.3E+02 0.0072 21.0 6.3 29 80-108 54-82 (217)
204 PRK09028 cystathionine beta-ly 24.6 4.5E+02 0.0097 22.5 10.4 91 13-111 84-177 (394)
205 PRK07811 cystathionine gamma-s 23.9 4.5E+02 0.0097 22.3 9.8 95 9-111 80-177 (388)
206 TIGR03568 NeuC_NnaA UDP-N-acet 23.8 4.4E+02 0.0095 22.1 8.4 36 7-42 2-40 (365)
207 PF06871 TraH_2: TraH_2; Inte 23.7 84 0.0018 23.9 2.6 27 82-108 3-29 (206)
208 KOG0100 Molecular chaperones G 23.5 2E+02 0.0044 25.0 5.1 24 30-53 362-385 (663)
209 TIGR00285 DNA-binding protein 23.3 2.3E+02 0.005 18.7 4.6 35 9-43 3-38 (87)
210 COG0075 Serine-pyruvate aminot 23.1 4.8E+02 0.011 22.4 10.5 92 17-111 68-162 (383)
211 PF00583 Acetyltransf_1: Acety 22.8 1.2E+02 0.0027 18.4 3.1 28 14-42 43-70 (83)
212 KOG2977 Glycosyltransferase [G 22.6 3.3E+02 0.0071 22.5 5.8 85 17-104 85-183 (323)
213 TIGR03702 lip_kinase_YegS lipi 22.2 4.2E+02 0.0091 21.3 8.2 58 17-75 15-73 (293)
214 PF02548 Pantoate_transf: Keto 22.0 4.1E+02 0.0089 21.4 6.4 36 22-61 8-43 (261)
215 COG1581 Ssh10b Archaeal DNA-bi 21.6 2.5E+02 0.0054 18.5 4.4 38 6-43 3-41 (91)
216 COG0626 MetC Cystathionine bet 21.6 5.3E+02 0.011 22.2 10.1 88 18-111 91-180 (396)
217 COG1597 LCB5 Sphingosine kinas 21.4 4.6E+02 0.0099 21.4 8.3 63 15-78 19-82 (301)
218 cd06407 PB1_NLP A PB1 domain i 21.0 1.4E+02 0.003 19.3 3.0 32 179-210 40-71 (82)
219 PLN03013 cysteine synthase 20.7 3.7E+02 0.008 23.5 6.3 62 34-95 201-262 (429)
220 PRK14719 bifunctional RNAse/5- 20.6 2.2E+02 0.0048 24.1 4.9 52 4-57 42-98 (360)
221 PLN02366 spermidine synthase 20.4 4.9E+02 0.011 21.4 10.0 33 4-38 90-122 (308)
222 PHA00673 acetyltransferase dom 20.3 93 0.002 22.9 2.3 28 14-42 103-130 (154)
No 1
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=100.00 E-value=1.2e-47 Score=296.74 Aligned_cols=207 Identities=43% Similarity=0.662 Sum_probs=180.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||||++++|||+|.|+++++.+++.+++|+||+++++++.+++++.. .++.++.||.+|++|+++||..++..
T Consensus 14 ~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~~v~iv~GG~tR~~SV~ngL~~l~~~ 91 (221)
T PF01128_consen 14 MGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--KKVKIVEGGATRQESVYNGLKALAED 91 (221)
T ss_dssp CTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--TTEEEEE--SSHHHHHHHHHHCHHCT
T ss_pred cCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--CCEEEecCChhHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999999999988888887776 56788999999999999999999765
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
+|+|++|||.|||++++.|+++++.... +++++++.|+.|++++++++|.+.++++|+++|.+||||+|+.+.|.++|+
T Consensus 92 ~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~~QTPQ~F~~~~l~~a~~ 171 (221)
T PF01128_consen 92 CDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWAVQTPQAFRFELLLEAYE 171 (221)
T ss_dssp SSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEEEEEEEEEEHHHHHHHHH
T ss_pred CCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeeeecCCCeecHHHHHHHHH
Confidence 6899999999999999999999999987 889999999999999998778899999999999999999999999999998
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.....+..+||++++++..|.++.+|+++..|+|||||+||.+||.++++
T Consensus 172 ~a~~~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~ 221 (221)
T PF01128_consen 172 KADEEGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ 221 (221)
T ss_dssp THHHHTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence 87666677899999999999999999999999999999999999999874
No 2
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=100.00 E-value=5.2e-44 Score=275.15 Aligned_cols=209 Identities=39% Similarity=0.612 Sum_probs=191.1
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCCcEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.|||+++++|+|||+|+++.++.++.+++|+|+++.++...+.+... ..+..+..+.||.+|++|+++||++++.
T Consensus 18 ~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~GG~~R~~SV~~gL~~~~~ 97 (230)
T COG1211 18 MGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGGATRQESVYNGLQALSK 97 (230)
T ss_pred cCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEEecCCccHHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999877677776663 3345688999999999999999999974
Q ss_pred -CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHH
Q 028081 80 -NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 158 (214)
Q Consensus 80 -~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~ 158 (214)
+.++||+||+.|||+++++|+++++....+++++++.|+.|++++.+++|.+..+++|+++|..||||+|+.+.|.+++
T Consensus 98 ~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~~l~~~QTPQ~F~~~~L~~a~ 177 (230)
T COG1211 98 YDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQAL 177 (230)
T ss_pred cCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChhhhhhhhCCccccHHHHHHHH
Confidence 4689999999999999999999997666688999999999999998777888999999999999999999999999999
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 159 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 159 ~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
......+..+||+.++++..|.++.+|+++..|++|+||+||++|+.+++.
T Consensus 178 ~~a~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 178 ARAFAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred HHHHhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 987777888999999999999999999999999999999999999999875
No 3
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=100.00 E-value=2.6e-42 Score=273.09 Aligned_cols=210 Identities=83% Similarity=1.239 Sum_probs=187.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||.|+++++..++.+++|+||+++++.+.++....+++..+.++.||.+|++|+++|+..+..+
T Consensus 38 mg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~gg~~r~~SV~~gl~~l~~~ 117 (252)
T PLN02728 38 MGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALPGKERQDSVFNGLQEVDAN 117 (252)
T ss_pred CCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcCCCCchHHHHHHHHHhccCC
Confidence 67778999999999999999999999876689999999987655555555556555667778899999999999988645
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++||++|||+++++|+++++....+++++++.|..|+++.+++++.+..+++|+.+|.+||||+|+...|.++|+.
T Consensus 118 ~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~QTPQ~F~~~~l~~a~~~ 197 (252)
T PLN02728 118 SELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFEL 197 (252)
T ss_pred CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEeCCccchHHHHHHHHHH
Confidence 68999999999999999999999988888899999999999998876778888999999999999999999999999998
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
...+++++||++++++..|.+|.+++++..|++||||+||..|+.+++.+
T Consensus 198 ~~~~~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~ 247 (252)
T PLN02728 198 VEREGLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNER 247 (252)
T ss_pred HHhcCCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhc
Confidence 77677889999999999999999999999999999999999999998755
No 4
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=8.3e-39 Score=251.58 Aligned_cols=210 Identities=33% Similarity=0.556 Sum_probs=181.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC---cEEEecCCccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sv~~al~~~ 77 (214)
||++.||+|++++|||||.|+++++..++.+++|+||++++++..+.+.+..++. .+.++.+|.++.+|+++|+..+
T Consensus 16 ~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~r~~sv~~gl~~~ 95 (230)
T PRK13385 16 MNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGTERQESVAAGLDRI 95 (230)
T ss_pred cCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCchHHHHHHHHHHhc
Confidence 6777899999999999999999999987778999999988765555555666653 3567778888999999999988
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
. +.+.+++|+||+||+++++|+++++.+..+++++++.++.++++.+. +|.+..+++|+.++.+||||+|+++.|.++
T Consensus 96 ~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~-~~~~~~~i~r~~~~~~qtpq~f~~~~l~~~ 173 (230)
T PRK13385 96 G-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVK-DKQVIETVDRNELWQGQTPQAFELKILQKA 173 (230)
T ss_pred c-CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEc-CCeeEeccCHHHHhhhcCCceeeHHHHHHH
Confidence 5 35789999999999999999999998877788899999999988875 466677889999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
++.....++++||+..++.+.|.+|.+++++..+++||||+||..|+.+++..++
T Consensus 174 ~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~~~~ 228 (230)
T PRK13385 174 HRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQGDIA 228 (230)
T ss_pred HHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhhccc
Confidence 9865444567899999999999999999999999999999999999999976554
No 5
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=100.00 E-value=4.1e-36 Score=235.82 Aligned_cols=211 Identities=41% Similarity=0.623 Sum_probs=177.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||.|+++++..++.+++|+|++++++++.+..........+.++.++.++.+|+..|+..++ +
T Consensus 17 ~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~-~ 95 (227)
T PRK00155 17 MGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGAERQDSVLNGLQALP-D 95 (227)
T ss_pred cCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcchHHHHHHHHHHhCC-C
Confidence 566789999999999999999999998766899999999875333322221111235567777789999999999884 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+++++++||+||+++++|+++++.+..+++++++.++.+++++++++|.+.++++|+.++.+|+|++|+++.|.+++..
T Consensus 96 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 175 (227)
T PRK00155 96 DDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALAR 175 (227)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHheeeeCCccchHHHHHHHHHH
Confidence 67999999999999999999999988777777888999888777654567778889999999999999999999999988
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
..++++|++|...+++..|.++..++++..++|||||+||+.||.+++.+++
T Consensus 176 ~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~~~ 227 (227)
T PRK00155 176 ALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRRIA 227 (227)
T ss_pred HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhccC
Confidence 7777889999999999999999999988889999999999999999987753
No 6
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=100.00 E-value=3.1e-35 Score=229.30 Aligned_cols=205 Identities=39% Similarity=0.631 Sum_probs=173.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++..++.+++|+|++++++.+.+....... ..+.++.++.++.+|+++|+..+. +
T Consensus 13 ~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~~~l~~~~-~ 90 (217)
T TIGR00453 13 FGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-AVPKIVAGGDTRQDSVRNGLKALK-D 90 (217)
T ss_pred CCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-CcEEEeCCCchHHHHHHHHHHhCC-C
Confidence 66667999999999999999999999875689999999987544344333221 134566777788999999999872 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.|++++++||+||+++++|+++++.+..+++++++.|..+++..++++|.+..+++|+.++.+|+|++|+...|.+++..
T Consensus 91 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 170 (217)
T TIGR00453 91 AEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQAFRTELLKKALAR 170 (217)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCCcccHHHHHHHHHH
Confidence 68999999999999999999999988766777888999998777665577888899999999999999999999998877
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
..+.++|++|...+++..|.++..++++..+++||||+||+.||+++
T Consensus 171 ~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~ 217 (217)
T TIGR00453 171 AKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL 217 (217)
T ss_pred HHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence 66678899999999999999999999988889999999999999864
No 7
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=100.00 E-value=3.7e-34 Score=238.00 Aligned_cols=196 Identities=32% Similarity=0.413 Sum_probs=166.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||+|+++++.+++.+++|+||+++++.+..+.....+. .+.++.+|.+|++|+++|++.++
T Consensus 19 mg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-~v~~v~gG~~r~~SV~~gL~~l~-- 95 (378)
T PRK09382 19 FSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-FVTLVTGGATRQESVRNALEALD-- 95 (378)
T ss_pred CCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC-eEEEeCCCchHHHHHHHHHHhcC--
Confidence 566789999999999999999999998877899999998875433333222221 25567888899999999999886
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++|+||+||+++++|+++++.+..+++++++.|+.|++++.+ .+++|+.++.+||||.|+...+.+++
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~------~tldR~~l~~~QTPQ~f~~~~l~~a~-- 167 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRAN------ETVDREGLKLIQTPQLSRTKTLKAAA-- 167 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEee------eEcCcccEEEEECCCCCCHHHHHHHH--
Confidence 4899999999999999999999998877788999999999987632 36899999999999999988777654
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..++++||++++++..|.+|.+++++..|+||+||+||..|+.+++.
T Consensus 168 --~~~~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 168 --DGRGDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred --hCCCCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 24577999999999999999999999999999999999999998865
No 8
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=100.00 E-value=1.6e-33 Score=219.76 Aligned_cols=202 Identities=41% Similarity=0.612 Sum_probs=171.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh--cCCcEEEecCCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~sv~~al~~~~ 78 (214)
||+..||+|++++|||||.|+++++..++.+++|+|+++++.......+ .. ....+.++.++.++.+|+++|++.++
T Consensus 14 ~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~si~~al~~~~ 92 (218)
T cd02516 14 MGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGLSKVVKIVEGGATRQDSVLNGLKALP 92 (218)
T ss_pred CCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-HhcccCCCeEEECCchHHHHHHHHHHHhcc
Confidence 4555699999999999999999999987668999999998764333221 11 22245667777778999999999884
Q ss_pred -cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 79 -FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 79 -~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
.+.+++++++||+||+++++|+++++.+..+++++++.|..+++++.+++|.+.++++|+.++.+++|++|+++.+.++
T Consensus 93 ~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~P~~f~~~~~~~~ 172 (218)
T cd02516 93 DADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKA 172 (218)
T ss_pred cCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhcCCCcccHHHHHHH
Confidence 2468999999999999999999999988777778888999998777776788889999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
+....+.|+|+||...++...|.++..++++..++|||||+||+.|
T Consensus 173 ~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 173 HRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred HHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 9888878899999999999999999999988889999999999753
No 9
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.94 E-value=2e-25 Score=176.10 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=138.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE----ecCCccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF----SLPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~sv~~al~~~~~~~ 81 (214)
+|+|++++|||||.|++++++++. +++|+|++++++ +.+.+..++..+.+ ..+|.++..++..++.. . +.
T Consensus 15 ~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~---i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~-~-~~ 88 (238)
T TIGR00466 15 GKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDES---VAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLAL-K-DD 88 (238)
T ss_pred CCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHH---HHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCC-C-CC
Confidence 699999999999999999999875 899999998654 45666677655433 23566666666555532 2 35
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccc--------cEEEe-cCCCce----ee--ecCccchhhhc
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA--------TIKEA-NSESFV----VR--TLDRKTLWEMQ 144 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~--------~~~~~-~~~g~v----~~--~~~r~~~~~~~ 144 (214)
++|++|+||+||+++++|+++++.+.. .+.++++.|..+ +++.+ +.+|.+ .. +.+|+.++..|
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~ 168 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQ 168 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccc
Confidence 899999999999999999999998754 466888899877 66665 445542 22 23677666666
Q ss_pred CCc-----------ccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CcccCCHHHHH
Q 028081 145 TPQ-----------VIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLL 201 (214)
Q Consensus 145 ~p~-----------~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~-~~~Idtp~Dl~ 201 (214)
+|| +|+++.|..+... ..+.++..+..++++ ++|.+|.++..+.. .++||||+|++
T Consensus 169 tpq~~~~~~h~Giy~~~~~~L~~~~~~-~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~ 238 (238)
T TIGR00466 169 TPVGDNLLRHIGIYGYRAGFIEEYVAW-KPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238 (238)
T ss_pred cccccceeEEEEEEeCCHHHHHHHHhC-CCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence 664 5778877765433 334466677777776 57999998876655 68999999984
No 10
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.6e-25 Score=167.57 Aligned_cols=202 Identities=15% Similarity=0.227 Sum_probs=143.3
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe----cCCccHHHHHHHHH
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGL 74 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv~~al 74 (214)
|+|+ .| |+|..|+|||||.|+.+++.+++ .++++|+|+++. +.+.++++|..+.+. ..|++| +..++
T Consensus 12 ~~STRLpgKPLadI~GkpmI~rV~e~a~~s~-~~rvvVATDde~---I~~av~~~G~~avmT~~~h~SGTdR---~~Ev~ 84 (247)
T COG1212 12 LASTRLPGKPLADIGGKPMIVRVAERALKSG-ADRVVVATDDER---IAEAVQAFGGEAVMTSKDHQSGTDR---LAEVV 84 (247)
T ss_pred hhcccCCCCchhhhCCchHHHHHHHHHHHcC-CCeEEEEcCCHH---HHHHHHHhCCEEEecCCCCCCccHH---HHHHH
Confidence 3443 45 99999999999999999999985 899999999875 578888898777664 345556 44555
Q ss_pred hhcc-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EEEe-cCCCcee----ee--cC
Q 028081 75 QEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVV----RT--LD 136 (214)
Q Consensus 75 ~~~~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~~~-~~~g~v~----~~--~~ 136 (214)
+.+. .+.++|+++|||.||+.++.|+.+++.+..+ +.+.++.++.+. ++.+ +.+|+.- .+ ..
T Consensus 85 ~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~ 164 (247)
T COG1212 85 EKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYG 164 (247)
T ss_pred HhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCc
Confidence 5543 2467999999999999999999999988764 346667776553 3333 3334321 11 13
Q ss_pred cc-----chhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 137 RK-----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 137 r~-----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+ .++++..-|+|+++.|.++.... .+.++-++..++++ ++|.+|++..... -.++|||||||++++++++
T Consensus 165 rd~~~~~p~l~HIGIYayr~~~L~~f~~~~-ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 165 RDNFGGTPFLRHIGIYAYRAGFLERFVALK-PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred ccccCCcchhheeehHHhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 33 34455556889988887755432 22244455555555 5899999876654 4599999999999999986
Q ss_pred cc
Q 028081 209 LS 210 (214)
Q Consensus 209 ~~ 210 (214)
..
T Consensus 244 ~~ 245 (247)
T COG1212 244 NN 245 (247)
T ss_pred hh
Confidence 43
No 11
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.7e-25 Score=164.17 Aligned_cols=194 Identities=15% Similarity=0.198 Sum_probs=145.4
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhcc
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~ 78 (214)
..||+.+++|||||.|+|++++.++.||+|+|+++.+. +.+.+++||..+.+ ..+.++...++.+++....
T Consensus 18 ~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~---Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~ 94 (228)
T COG1083 18 KNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEE---ILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFN 94 (228)
T ss_pred CccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHH---HHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhc
Confidence 34999999999999999999999999999999998865 56778899876632 3344444567888888776
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEEe--cCCCceeeecCccchhhhcCCcc-cChHH
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEA--NSESFVVRTLDRKTLWEMQTPQV-IKPDL 153 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~~--~~~g~v~~~~~r~~~~~~~~p~~-f~~~~ 153 (214)
...+.++.++++.||++..+|+++++.+.+ ++++++++|.+...++. .++|.+...-+ .|.. -++|.
T Consensus 95 ~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~--------~~~~~~rrQ~ 166 (228)
T COG1083 95 IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNE--------DPDFETRRQD 166 (228)
T ss_pred cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcCCceeeccc--------CCcccccccc
Confidence 556789999999999999999999998875 46789999988764332 22343332211 1222 24577
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHh---CC-CCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 154 LKKGFELVNREGLEVTDDVSIVEH---LK-HPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~~---~g-~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
|+.+|... ..+|+.+...++++ .+ ....++++....+|||++.||+++|.++..+.
T Consensus 167 Lpk~Y~~N--gaiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~ 226 (228)
T COG1083 167 LPKAYREN--GAIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLIFLKE 226 (228)
T ss_pred chhhhhhc--CcEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHhhhhh
Confidence 88888762 23688877666664 33 55567788888999999999999999987554
No 12
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.7e-24 Score=176.76 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=161.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+|..||.|++++||||++|+++++.... .++++||.++.. +.+++.+.+.. ++.++.+ ..+..+++..|+.++.
T Consensus 16 MkS~lPKVLH~vaGkpMl~hVi~~a~~l~-~~~i~vVvGh~a-e~V~~~~~~~~-~v~~v~Q~eqlGTgHAV~~a~~~l~ 92 (460)
T COG1207 16 MKSDLPKVLHPVAGKPMLEHVIDAARALG-PDDIVVVVGHGA-EQVREALAERD-DVEFVLQEEQLGTGHAVLQALPALA 92 (460)
T ss_pred ccCCCcccchhccCccHHHHHHHHHhhcC-cceEEEEEcCCH-HHHHHHhcccc-CceEEEecccCChHHHHHhhhhhhh
Confidence 89999999999999999999999999875 799999999987 56666555332 3555443 2334788999999984
Q ss_pred cCC-CeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEE--e--cCCCceeeecCc-------cchhhhc
Q 028081 79 FNS-ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKE--A--NSESFVVRTLDR-------KTLWEMQ 144 (214)
Q Consensus 79 ~~~-~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~--~--~~~g~v~~~~~r-------~~~~~~~ 144 (214)
++. ..+|++.||.||+++++++.|++.... .+..++.....||..+ + +++|.+.++++. ..+..++
T Consensus 93 ~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiN 172 (460)
T COG1207 93 DDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEIN 172 (460)
T ss_pred cCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEe
Confidence 333 368999999999999999999988764 3446777778887432 1 335677777643 2334455
Q ss_pred C-CcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcccC
Q 028081 145 T-PQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
+ -++|....|.+++....++ +||+||...++...|.+|..+..+ .+..+|++..+|+.+|.++++|++
T Consensus 173 tGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~ 247 (460)
T COG1207 173 TGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247 (460)
T ss_pred eeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH
Confidence 5 4899999899988876543 389999999999999999987654 467899999999999999998764
No 13
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.92 E-value=3.9e-24 Score=167.04 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=134.5
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhccc
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~~ 79 (214)
+|++++++|||||.|+++++.+++.+++|+|+|++++ +.+.++.+|..+.+ ..+++++.+++.+|+..++.
T Consensus 15 ~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~---i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~ 91 (222)
T TIGR03584 15 RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEE---IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKL 91 (222)
T ss_pred CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHH---HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhh
Confidence 3999999999999999999999988999999888754 45666777765433 35667788999999988742
Q ss_pred --CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccc-E--EEecCCCceeeecCccchhhhcCCcccChH
Q 028081 80 --NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKAT-I--KEANSESFVVRTLDRKTLWEMQTPQVIKPD 152 (214)
Q Consensus 80 --~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~-~--~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~ 152 (214)
+.|.|++++||+||+++++|+++++.+.+ +++++++++.... . ...+++|......+... .-++|
T Consensus 92 ~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~rQ 163 (222)
T TIGR03584 92 QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPEHF--------NTRSQ 163 (222)
T ss_pred cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCCCcc--------cCCCC
Confidence 36899999999999999999999998864 4667888775432 1 12233454332211110 11445
Q ss_pred HHHHHHHHHHhcC-CCCCcHHHHHHh---CCCCeE-EEecCCCCcccCCHHHHHHHHHHhh
Q 028081 153 LLKKGFELVNREG-LEVTDDVSIVEH---LKHPVY-ITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 153 ~l~~~~~~~~~~~-~~~~d~~~~~~~---~g~~i~-~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++..|.. +| +|+.....+++. .|.++. +++.+...+||||++||.+||.+++
T Consensus 164 d~~~~y~~---nga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~ 221 (222)
T TIGR03584 164 DLEEAYHD---AGQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAELLYK 221 (222)
T ss_pred CCchheee---CCeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence 55555543 33 666665544442 355655 4556678999999999999999874
No 14
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.90 E-value=6.2e-23 Score=160.41 Aligned_cols=188 Identities=15% Similarity=0.214 Sum_probs=128.1
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhccc
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~~ 79 (214)
+|+|++++|||||.|+++++.+++.+++|+|+++++. +.+.+..++..+.+ ..++.++.+++.+|+++++.
T Consensus 17 ~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 93 (223)
T cd02513 17 GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEE---IAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEE 93 (223)
T ss_pred CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHH---HHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHH
Confidence 5999999999999999999998877899999886543 34445555542222 24555678999999987752
Q ss_pred ---CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEEe---cCCCce-eeecCccchhhhcCCcccC
Q 028081 80 ---NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEA---NSESFV-VRTLDRKTLWEMQTPQVIK 150 (214)
Q Consensus 80 ---~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~~---~~~g~v-~~~~~r~~~~~~~~p~~f~ 150 (214)
..+.+++++||+||+++++|+++++.+.. .++++++.+..++.+.. .++|.. .....++..+.+++|+.|.
T Consensus 94 ~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 173 (223)
T cd02513 94 LGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEPVNYPEDKRTRRQDLPPAYH 173 (223)
T ss_pred hCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccCCceeccCcccccCCcCCChhHee
Confidence 24799999999999999999999998865 35677777777654331 112211 1112334445556665554
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeE-EEecCCCCcccCCHHHHHHHHHHh
Q 028081 151 PDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVY-ITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~i~-~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
.. .++|......+.+ ..|.++. ++.++..++|||||+||.+||.++
T Consensus 174 ~n-----------~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~ 223 (223)
T cd02513 174 EN-----------GAIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEALL 223 (223)
T ss_pred EC-----------CEEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence 21 1234333332332 2477875 556677899999999999999864
No 15
>PLN02917 CMP-KDO synthetase
Probab=99.89 E-value=7.1e-22 Score=160.01 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=133.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe----cCCccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv~~al~~~~~~~ 81 (214)
+|+|++++|||||.|+++++..++.++.|+|+++++ .+.+.+..++..+.+. .+| .+.+..|++.++.+.
T Consensus 63 ~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e---~I~~~~~~~~v~vi~~~~~~~~G---T~~~~~a~~~l~~~~ 136 (293)
T PLN02917 63 GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE---RIAECCRGFGADVIMTSESCRNG---TERCNEALKKLEKKY 136 (293)
T ss_pred CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH---HHHHHHHHcCCEEEeCCcccCCc---hHHHHHHHHhccCCC
Confidence 499999999999999999999877667777665543 3566666666443322 233 344567777775346
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEE--eeec--ccc-----EEEe-cCCCc-e---eeec--Ccc------
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVL--GVPA--KAT-----IKEA-NSESF-V---VRTL--DRK------ 138 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~--~~~~--~~~-----~~~~-~~~g~-v---~~~~--~r~------ 138 (214)
|++++++||+||+++++|+++++.+.... ..++ +.++ .++ ++.+ +++|. + ..++ .++
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 89999999999999999999999775432 3222 2222 222 3322 33454 2 1323 122
Q ss_pred chhhh-cCCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccCC
Q 028081 139 TLWEM-QTPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 213 (214)
Q Consensus 139 ~~~~~-~~p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~~ 213 (214)
.++.. -.-++|+.+.|. .+....++ .+|+||.. +.+.|.+|..+..+...++||||+||+.+|++++++..|
T Consensus 217 ~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~ 293 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293 (293)
T ss_pred cceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 11222 235899999888 55554332 36788875 457899998876666788999999999999999877543
No 16
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=143.29 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=125.9
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~ 81 (214)
.||+|+++.|+||+.|+++++...+ ++++|||++++..+......... .+.++.+ ..+.++|++.|+.++..+.
T Consensus 21 ~~KlLap~~g~plv~~~~~~a~~a~-~~~vivV~g~~~~~~~~a~~~~~--~~~~v~npd~~~Gls~Sl~ag~~a~~~~~ 97 (199)
T COG2068 21 QPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAVEALLAQL--GVTVVVNPDYAQGLSTSLKAGLRAADAEG 97 (199)
T ss_pred CcceecccCCCcHHHHHHHHHHhcC-CCeEEEEeCcchhhHHHhhhccC--CeEEEeCcchhhhHhHHHHHHHHhcccCC
Confidence 5899999999999999999999875 89999999997422223222222 3444432 2235889999999987444
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 161 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~ 161 (214)
+.++++.||||++++++++++++.+...+ ..+.|.... ..| .|..|.+..+..+....
T Consensus 98 ~~v~~~lgDmP~V~~~t~~rl~~~~~~~~--~~v~p~~~g-----~rG---------------~Pv~~~~~~~~~l~~l~ 155 (199)
T COG2068 98 DGVVLMLGDMPQVTPATVRRLIAAFRARG--AAVRPVYGG-----ARG---------------HPVLLSKDLFPALARLS 155 (199)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhccccC--ceeeeeccC-----CcC---------------CceeechhHHHHHhhcC
Confidence 68999999999999999999999887653 233443321 112 47888887765443332
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec-CCCCcccCCHHHHHHHHHHhh
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~-~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
++ +....++++.|.....|+. +....|||||+||..++.++.
T Consensus 156 GD-----~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 GD-----VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred Cc-----hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 21 3456678888888877776 567899999999999998765
No 17
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.87 E-value=2.2e-20 Score=147.57 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=129.7
Q ss_pred CCCCC--CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhc
Q 028081 1 MGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~--~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~ 77 (214)
|+|.+ ||+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+..++..+.+... ......++..++..+
T Consensus 10 g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~ 86 (239)
T cd02517 10 YASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDE---RIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKL 86 (239)
T ss_pred CCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhc
Confidence 45665 899999999999999999999885589999998764 355555566654433322 122344577777666
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeeccccE---------EEecCCCceeeec-----C-cc-
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAKATI---------KEANSESFVVRTL-----D-RK- 138 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~~~~---------~~~~~~g~v~~~~-----~-r~- 138 (214)
....+.+++++||+||+++++++++++.+... + .++++.+..++- ...+++|.+.... + +.
T Consensus 87 ~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~ 166 (239)
T cd02517 87 DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDS 166 (239)
T ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCC
Confidence 42247899999999999999999999877543 2 344556654321 1223345553211 1 00
Q ss_pred ---chhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCcccCCHHHHHHHHHH
Q 028081 139 ---TLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 139 ---~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
...... .-+.|+.+.+..+... ....++.++.... +...|.++..+..+..+++||||+||..|+++
T Consensus 167 ~~~~~~~~~~Giy~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~ 239 (239)
T cd02517 167 SEDFPYYKHIGIYAYRRDFLLRFAAL-PPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL 239 (239)
T ss_pred CCCCceeEEEEEEEECHHHHHHHHhC-CCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence 011122 2477887776654332 1122445554443 34577888877655569999999999999863
No 18
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.86 E-value=4.6e-20 Score=145.69 Aligned_cols=201 Identities=16% Similarity=0.230 Sum_probs=124.7
Q ss_pred CCCC-C-CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhc
Q 028081 1 MGAN-M-PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~-~-~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~ 77 (214)
|+|. . +|+|++++|||||+|+++++++++.+++|+|+++++ .+++.++.++..+.+... .......+.+++..+
T Consensus 11 g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~---~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~ 87 (238)
T PRK13368 11 YGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ---RIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKI 87 (238)
T ss_pred CCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH---HHHHHHHHcCCeEEecCccCCCccHHHHHHHHhC
Confidence 3554 3 499999999999999999999985689999999764 356666666655433221 111233567777766
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeE-Eeeecc------ccE---EEecCCCceeeecCc-----cc-
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAV-LGVPAK------ATI---KEANSESFVVRTLDR-----KT- 139 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i-~~~~~~------~~~---~~~~~~g~v~~~~~r-----~~- 139 (214)
. .|.+++++||+||+++++++++++.+...+ .++ .+.+.. ++. ...+++|.+....+. ..
T Consensus 88 ~--~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~ 165 (238)
T PRK13368 88 E--ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDG 165 (238)
T ss_pred C--CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCC
Confidence 3 578999999999999999999999886433 232 232221 111 122334655433211 11
Q ss_pred hhhhcCC----cccChHHHHHHHHHHHhcCCC-CCc-HHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 140 LWEMQTP----QVIKPDLLKKGFELVNREGLE-VTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 140 ~~~~~~p----~~f~~~~l~~~~~~~~~~~~~-~~d-~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
......+ |+|+.+.|.. +......+.+ ++. +...+-..|.++..+..+..++|||||+||..|+.++
T Consensus 166 ~~~~~~~n~giy~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~ 238 (238)
T PRK13368 166 ESARYLKHVGIYAFRRDVLQQ-FSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM 238 (238)
T ss_pred CCCceeEEEEEEEeCHHHHHH-HHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence 1111122 7888776654 2211001100 111 1112333677888777777899999999999999864
No 19
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.86 E-value=2.8e-20 Score=145.98 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+...||+|++++|||||.|+++++.+++ +++|+|+++++. +.+.+.+..++..+.......+..+++++|+..+..+
T Consensus 12 ~~~~~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~~ 89 (229)
T cd02540 12 MKSDLPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGA-EQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKDF 89 (229)
T ss_pred CCCCCChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhccC
Confidence 44457999999999999999999999886 899999988774 5566666655443322222334688999999888532
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccccE----EEecCCCceeeecCccch-------hhhcC-C
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-P 146 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-p 146 (214)
.+.+++++||+||++.+.++++++.+.+. ++++++.+..++. ...+++|.+..+.++... ...++ .
T Consensus 90 ~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~gi 169 (229)
T cd02540 90 EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGI 169 (229)
T ss_pred CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEE
Confidence 57899999999999999999999987653 3445555555542 112444666555433211 22233 6
Q ss_pred cccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHH
Q 028081 147 QVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDL 200 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl 200 (214)
+.|+.+.+.+++..... .++++++....+...|.+|..++. ...++.|++|.|+
T Consensus 170 y~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 170 YAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 88888777776654322 224577777777778888887654 4689999999985
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=2.2e-19 Score=154.53 Aligned_cols=206 Identities=16% Similarity=0.200 Sum_probs=138.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~ 78 (214)
|+.+.||+|++++|||||+|+++++.... +++|+|++++.. +.+++.....+ +.++. ...+..++++.+++.+.
T Consensus 19 ~~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~--~~~v~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK14356 19 MHSDKPKVLQTLLGEPMLRFVYRALRPLF-GDNVWTVVGHRA-DMVRAAFPDED--ARFVLQEQQLGTGHALQCAWPSLT 94 (456)
T ss_pred CCCCCCceecccCCCcHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhccccC--ceEEEcCCCCCcHHHHHHHHHHHh
Confidence 56678999999999999999999998874 789999998764 44554443322 23332 22334678888988875
Q ss_pred c-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEE--E-ecCCCceeeecCccchhh---------hc-
Q 028081 79 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--E-ANSESFVVRTLDRKTLWE---------MQ- 144 (214)
Q Consensus 79 ~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~--~-~~~~g~v~~~~~r~~~~~---------~~- 144 (214)
. ..+.+++++||+||+++++++.+++.+...++++...++.++.. . ..++|.+..+.++..+.. ..
T Consensus 95 ~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~~~~~~~~~ 174 (456)
T PRK14356 95 AAGLDRVLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEVNA 174 (456)
T ss_pred hcCCCcEEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCCCChHHhhhhcCeEEE
Confidence 3 24789999999999999999999987764445555566555421 1 123566655544322110 00
Q ss_pred CCcccChHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.-+.|+.+.+..+++... ..++++++....+...|.++..+... ..+++||||+||..++.++..+
T Consensus 175 GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 175 GIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred EEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 124577766555444321 12356777666666778888876643 3679999999999999988754
No 21
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.83 E-value=9.6e-19 Score=138.75 Aligned_cols=202 Identities=15% Similarity=0.185 Sum_probs=125.3
Q ss_pred CCCCC--CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC-ccHHHHHHHHHhhc
Q 028081 1 MGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~--~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~al~~~ 77 (214)
|+|.+ +|+|++++|||||+|+++++.++ .+++|+|+++++ .+.+.+..++..+.+.... .....++..++..+
T Consensus 11 g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~---~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~ 86 (245)
T PRK05450 11 YASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDE---RIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKL 86 (245)
T ss_pred CCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcH---HHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhc
Confidence 34554 59999999999999999999988 589999998753 3455555566554433211 11123344444444
Q ss_pred c-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc------c--EE-EecCCCceeeec-----Ccc--
Q 028081 78 D-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA------T--IK-EANSESFVVRTL-----DRK-- 138 (214)
Q Consensus 78 ~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~------~--~~-~~~~~g~v~~~~-----~r~-- 138 (214)
. .+.+.+++++||+||+++++++++++.+... +.++++.+..+ + .. .++++|.+.... +..
T Consensus 87 ~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~ 166 (245)
T PRK05450 87 GLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDA 166 (245)
T ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCc
Confidence 2 1357899999999999999999999987654 33444454422 1 11 135556654321 100
Q ss_pred ------chhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 139 ------TLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 139 ------~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
...... .-+.|..+.+..+... ....++.++.... +...|.+|+.+..+ ..|++||||+||..|++.+
T Consensus 167 ~~~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 167 FADSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cccccCccccEEEEEEecCHHHHHHHHhC-CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 011111 2477887766554332 1122333443321 33578889887665 4899999999999999765
No 22
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.82 E-value=1e-18 Score=150.47 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=138.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+.. .+.++ ....+..+++++++..++
T Consensus 16 l~~~~pK~ll~i~Gkpli~~~l~~l~~~g-i~~iivvv~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~al~~a~~~l~ 90 (458)
T PRK14354 16 MKSKLPKVLHKVCGKPMVEHVVDSVKKAG-IDKIVTVVGHGA-EEVKEVLGD---RSEFALQEEQLGTGHAVMQAEEFLA 90 (458)
T ss_pred cCCCCChhhCEeCCccHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhcC---CcEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44568999999999999999999999875 899999888775 445544322 12222 122334788999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccE----EEecCCCceeeecCccc-------hhhhcC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~ 145 (214)
...+.+++++||+||+++++++++++.++..++ .+.+.+..++. ...+++|.+..+.++.. .+..++
T Consensus 91 ~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~ 170 (458)
T PRK14354 91 DKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINT 170 (458)
T ss_pred ccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEE
Confidence 324679999999999999999999998865443 33334444431 11244556655543321 123343
Q ss_pred -CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhc
Q 028081 146 -PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 146 -p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
++.|+.+.|.+++..... ..+++++....+.+.|.++..+..+ ..+++||+++||..|+.+++.
T Consensus 171 Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~ 241 (458)
T PRK14354 171 GTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR 241 (458)
T ss_pred EEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence 588988777666654322 1245666666666777788776543 578999999999999987653
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.82 E-value=8.3e-19 Score=150.51 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=138.7
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ec-CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SL-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~sv~~al~~~~ 78 (214)
|++..||+|++++|||||+|+++++..++ +++|+|++++.. +.+.+.+..++..+.+ .. ...+..++++.++..+.
T Consensus 19 ~~~~~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~ 96 (446)
T PRK14353 19 MKSSLPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGA-EAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALA 96 (446)
T ss_pred cCCCCCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCH-HHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHh
Confidence 45567999999999999999999999885 899999998875 4556655544323222 22 22234788888888774
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEE---ecCCCceeeecCccch-------hhhc-CC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKE---ANSESFVVRTLDRKTL-------WEMQ-TP 146 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~---~~~~g~v~~~~~r~~~-------~~~~-~p 146 (214)
...+.+++++||+||++++.++.+++.... .+.++.+.+..++..+ ..++|.+..+.++... .... .-
T Consensus 97 ~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~g~v~~~~ek~~~~~~~~~~~~~~~Gi 176 (446)
T PRK14353 97 GGYGDVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAIVEEKDASDEERAITLCNSGV 176 (446)
T ss_pred ccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEECCCeEEEEEECCCCChHHhhceEEEEEE
Confidence 224668899999999999999999985543 3445666666554211 1134555544321100 0000 12
Q ss_pred cccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhhcc
Q 028081 147 QVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.|+...+.++++.... ..+++++....+.+.|.++..+..+. .+.+||||+||..|+.+++.+
T Consensus 177 y~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~ 245 (446)
T PRK14353 177 MAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQAR 245 (446)
T ss_pred EEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHH
Confidence 46666666566554321 22566777777778888899887754 567999999999999877643
No 24
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.80 E-value=4.3e-18 Score=146.26 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+..+||+|++++|+|||.|+++++.++. +++++|+++++. +.+++.+..++..+..-....+..+++++|+..++.
T Consensus 14 ~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~-~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~- 90 (451)
T TIGR01173 14 MKSDLPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGA-EQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD- 90 (451)
T ss_pred cCCCCchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-
Confidence 45567999999999999999999999885 789999988775 456666655543332211122357889999988852
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhc-CCcc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQ-TPQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~-~p~~ 148 (214)
.+.+++++||+||++++.++++++.+.+.+.++.+.+..++. ...+++|.+..+.++... .... ..+.
T Consensus 91 ~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~ 170 (451)
T TIGR01173 91 DGDVLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYV 170 (451)
T ss_pred CCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEE
Confidence 367899999999999999999998876555445555554431 123445666555433211 1111 2478
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhc
Q 028081 149 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 149 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
|+.+.|.+++..... .++++++....+...|.++..++.+ ..+++++||+|+..++.++..
T Consensus 171 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 171 FDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred EeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 888776665544321 1244565555566677888877644 358999999999998777654
No 25
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.80 E-value=4.2e-18 Score=129.21 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=107.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++..++ +++|+|++++... .....+..++..+.... .+.++.+++..|++++....+++
T Consensus 17 ~K~l~~~~g~~li~~~i~~l~~~~-~~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~v 94 (186)
T cd04182 17 NKLLLPLDGKPLLRHALDAALAAG-LSRVIVVLGAEAD-AVRAALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADAV 94 (186)
T ss_pred CceeCeeCCeeHHHHHHHHHHhCC-CCcEEEECCCcHH-HHHHHhcCCCeEEEeCCChhhCHHHHHHHHHHhccccCCEE
Confidence 899999999999999999999873 7999999987652 23333333332211111 12456899999999875336889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhc
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 164 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~ 164 (214)
+++.||+||++++.++++++.+......+ +.+..+ ++. ..|-.|++..+..+.+..
T Consensus 95 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~-v~~~~~-------g~~-------------~~P~~~~~~~~~~l~~~~--- 150 (186)
T cd04182 95 LILLADQPLVTAETLRALIDAFREDGAGI-VAPVYQ-------GRR-------------GHPVLFPRSLFPELLALS--- 150 (186)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCCCeE-EEEecC-------Ccc-------------CCCeeECHHHHHHHHccC---
Confidence 99999999999999999998876433322 233221 110 035567766554432211
Q ss_pred CCCCCcHHHHHHhCCCCeE-EEecCCCCcccCCHHHHH
Q 028081 165 GLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDLL 201 (214)
Q Consensus 165 ~~~~~d~~~~~~~~g~~i~-~v~~~~~~~~Idtp~Dl~ 201 (214)
| -.....++...+.... .+..+...++||||+||+
T Consensus 151 g--~~g~~~~~~~~~~~~~~~~~~~~~~~nint~~d~~ 186 (186)
T cd04182 151 G--DKGARSLLRAHPDRVVVEVDDPGVLIDIDTPEDLR 186 (186)
T ss_pred C--ChhHHHHHHhCcccEEEEeCCCCcccCCCCHHHhC
Confidence 1 1122345555554432 233345578999999984
No 26
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.80 E-value=3.3e-18 Score=146.12 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=131.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC----ccHHHHHHHHHhh
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG----KERQDSVYSGLQE 76 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~sv~~al~~ 76 (214)
|+.++||+|++++|+|||+|+++.+.+. +++|+|++++.. +.+++.+.++...+.++... .+..+++..
T Consensus 16 l~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~---- 88 (430)
T PRK14359 16 MKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQK-ERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG---- 88 (430)
T ss_pred CCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCH-HHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----
Confidence 4557899999999999999999999875 588999988875 55666665543234443211 112344433
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE--EEe-cCCCceeeecCccch-------hhhc-C
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI--KEA-NSESFVVRTLDRKTL-------WEMQ-T 145 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~--~~~-~~~g~v~~~~~r~~~-------~~~~-~ 145 (214)
+....+.+++++||+||++++.++++++. ..+..+++.++.++. ..+ .++|.+..+.++... +... .
T Consensus 89 ~~~~~d~vlv~~gD~p~~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~G 166 (430)
T PRK14359 89 IEPKHERVLILNGDMPLVEKDELEKLLEN--DADIVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEEELKIKSVNAG 166 (430)
T ss_pred cccCCCeEEEEECCccCCCHHHHHHHHhC--CCCEEEEEEEcCCCccCcEEEEcCCeEEEEEECCCCCcccccceEEEeE
Confidence 22225789999999999999999887642 223445555665542 111 124566554432211 1111 2
Q ss_pred CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhhcc
Q 028081 146 PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 146 p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+.|+...|..+...... .+++++|....+.+.|.++..+..+ ..+++||||+||..|+.++..+
T Consensus 167 iyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 167 VYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred EEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence 478888877765543221 2367888777777788889887765 4688999999999999888654
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=4.1e-18 Score=146.41 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=135.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+..++ .+.++.. ..+..++++.++..+.
T Consensus 15 ~~~~~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l~ 91 (450)
T PRK14360 15 MKSSLPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQA-EEVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVLK 91 (450)
T ss_pred CCCCCChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHhh
Confidence 55668999999999999999999999885 788888888764 44555554432 2334321 1223678888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE--EeeeccccEE----EecCCCceeeecCccchhhhc--------
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATIK----EANSESFVVRTLDRKTLWEMQ-------- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i--~~~~~~~~~~----~~~~~g~v~~~~~r~~~~~~~-------- 144 (214)
...+.+++++||+||++++.++++++.+...++.+ ...+..++.. ..+++|.+..+.++..+...+
T Consensus 92 ~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 171 (450)
T PRK14360 92 GFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINA 171 (450)
T ss_pred ccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEE
Confidence 32356889999999999999999999887655433 2334444421 234456676665543322222
Q ss_pred CCcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 145 TPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..|.|+.+.|.+++..... .+++++|....+...+ -.-+.+...+++||+|+|+..++.+++.
T Consensus 172 Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~~--~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 172 GIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVM--AVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred EEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhhce--EEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 2478888777777654322 2256777655553210 0113444568999999999999998764
No 28
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.79 E-value=1.7e-17 Score=130.75 Aligned_cols=179 Identities=20% Similarity=0.235 Sum_probs=107.2
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccH-HHHHHHHHhhcccCCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~~~~~~~~ 83 (214)
+|+|++++|+|||+|+++++.+++.+++|+|+++.+.. +.+.+.+..++ +.++.++... ......++... +.++
T Consensus 15 ~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~--v~~v~~~~~~~l~~~~~~~~~~--~~d~ 90 (233)
T cd02518 15 GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLG--VKVFRGSEEDVLGRYYQAAEEY--NADV 90 (233)
T ss_pred CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcC--CeEEECCchhHHHHHHHHHHHc--CCCE
Confidence 59999999999999999999987658999999987641 23445554444 3344444332 22222233222 3689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||+++++++++++.+...+..+.+... . .|. .....+..|....+.++....+.
T Consensus 91 vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~-------~-~g~----------Pv~~~~~~~~~~~~~~l~~~~gd 152 (233)
T cd02518 91 VVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTL-------P-RTY----------PDGLDVEVFTRDALERAAAEADD 152 (233)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCC-------C-CCC----------CCceEEEEEEHHHHHHHHHhCCC
Confidence 99999999999999999999987654333322100 0 110 00001225555555555443222
Q ss_pred cCCCCCcHH-HHHHhCCCCeEE--EecCC-----CCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDV-SIVEHLKHPVYI--TEGSY-----TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~-~~~~~~g~~i~~--v~~~~-----~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|. .+.. ..++++...+.. +..+. ..+|||||+||..++.+++
T Consensus 153 ~g~--r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~~ 203 (233)
T cd02518 153 PYE--REHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIKEIYE 203 (233)
T ss_pred hhh--hcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHHHHHH
Confidence 221 0000 123444434444 33322 2689999999999998876
No 29
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.78 E-value=1.4e-17 Score=127.23 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=105.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchH--HHHHHH-HhcCCcEEEecCC-ccHHHHHHHHHhh
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEETK-EKINVDLKFSLPG-KERQDSVYSGLQE 76 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~sv~~al~~ 76 (214)
||+ +|+|++++|+|||+|+++.+.+.. +++|+||++++... .+.+.. ...+..+....+. .++.+|+..|+++
T Consensus 14 mg~--~K~ll~~~g~~ll~~~i~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 14 MGE--NKLALPLGETTLGSASLKTALSSR-LSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCC--CceeceeCCccHHHHHHHHHHhCC-CCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHH
Confidence 554 899999999999999998877664 89999999876421 111111 1112222223332 2468999999998
Q ss_pred cc-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHH
Q 028081 77 VD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLK 155 (214)
Q Consensus 77 ~~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~ 155 (214)
+. .+.+++++++||+||+++++++++++.+..+...+.+ +.. +|. ...|-.|+...+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~-~~~--------~g~------------~~~p~~~~~~~~~ 149 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYVA-ASF--------KGK------------PRPPILFSKSLFP 149 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE-Eec--------CCC------------CCCCeEEcHHHHH
Confidence 63 2468999999999999999999999987554332221 211 121 0135567766554
Q ss_pred HHHHHHHhcCCCCCcHHHHHHhCCCCeE-EEecCCCCcccCCHHHH
Q 028081 156 KGFELVNREGLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDL 200 (214)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~~~~g~~i~-~v~~~~~~~~Idtp~Dl 200 (214)
.+.+..+ -.+...++++.+.... .+......+|||||+||
T Consensus 150 ~l~~~~~-----~~g~~~~l~~~~~~~~~~~~~~~~~~dint~ed~ 190 (190)
T TIGR03202 150 KLKALKG-----DEGARALLRKDKSGLALPVADASAFFDIDTKEDY 190 (190)
T ss_pred HHHhCCC-----CccHHHHHhhCCcceEEecCCCccccCCCChhhC
Confidence 4322111 1233455655543222 22333456899999996
No 30
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.78 E-value=3.6e-17 Score=125.29 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~ 81 (214)
+.||++++++|+|||+|+++.+. +.+++|+|+++.+. +.+ ...+..+... .+..++..|++.|+...+ .
T Consensus 19 ~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~~----~~~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~ 89 (193)
T PRK00317 19 GVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-ARY----AAFGLPVIPDSLADFPGPLAGILAGLKQAR--T 89 (193)
T ss_pred CCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HHH----HhcCCcEEeCCCCCCCCCHHHHHHHHHhcC--C
Confidence 36899999999999999999998 35899999987653 222 2233332211 122456889999998654 6
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE 159 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~ 159 (214)
+++++++||+||+++++++++++.+...+..+.+. .. ++.. .|- .|++..+..+.+
T Consensus 90 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~-~~--------~~~~-------------~Pl~~~~~~~~~~~l~~ 147 (193)
T PRK00317 90 EWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAWA-HD--------GGRL-------------HPTFALYSVALLPDLEA 147 (193)
T ss_pred CeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEEE-ee--------CCcc-------------eeEEEEEeHHHHHHHHH
Confidence 88999999999999999999999765433222211 11 1211 243 566655544332
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCcccCCHHHHHHHHHH
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~ 206 (214)
.. ..|. .....+++..+.....+. .+...+|||||+||+.++..
T Consensus 148 ~l-~~g~--~~~~~~l~~~~~~~v~~~~~~~~~~dinTped~~~~~~~ 192 (193)
T PRK00317 148 YL-AAGE--RKVMAFYARHGGVAVDFSDPKDAFFNINTPEDLAQLEEL 192 (193)
T ss_pred HH-HcCC--chHHHHHHHCCcEEEeCCCCCCccCcCCCHHHHHHHHhh
Confidence 21 1221 122334555542211122 23456899999999988754
No 31
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.78 E-value=1.7e-17 Score=143.76 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=136.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+......+.++.. ..+..++++.|+..+.
T Consensus 18 m~~~~pK~llpi~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~ 95 (482)
T PRK14352 18 MRSDTPKVLHTLAGRSMLGHVLHAAAGLA-PQHLVVVVGHDR-ERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALP 95 (482)
T ss_pred CCCCCCceeceeCCccHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhc
Confidence 55568999999999999999999999875 789999998765 4455555443322333321 1234678999998875
Q ss_pred c-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccccE----EEecCCCceeeecCccc-------hhhhc
Q 028081 79 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQ 144 (214)
Q Consensus 79 ~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~--i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~ 144 (214)
. ..+.+++++||+||+++++++++++.+...++. +...+..++. ...+++|.+.++.++.. ....+
T Consensus 96 ~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~ 175 (482)
T PRK14352 96 ADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVN 175 (482)
T ss_pred cCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEE
Confidence 3 236789999999999999999999987665543 3333444442 12244566766554322 11233
Q ss_pred C-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHH
Q 028081 145 T-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDL 200 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl 200 (214)
+ +|.|+.+.|..++..... ..++++|....+...|.++..++.+..|.++.+++++
T Consensus 176 ~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 176 SGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 3 799998888776654332 2356788777777888889887776778888877776
No 32
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.78 E-value=1.8e-17 Score=126.24 Aligned_cols=168 Identities=19% Similarity=0.209 Sum_probs=107.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~ 81 (214)
.||+|++++|+|||.|+++++.++. +++|+|+++++..+.+..++..++ +.++.. ..++.+|+..|+. +..+.
T Consensus 15 ~~K~ll~~~g~pll~~~i~~l~~~~-~~~iivv~~~~~~~~~~~~~~~~~--v~~v~~~~~~~g~~~si~~~l~-~~~~~ 90 (188)
T TIGR03310 15 QNKLLLPYKGKTILEHVVDNALRLF-FDEVILVLGHEADELVALLANHSN--ITLVHNPQYAEGQSSSIKLGLE-LPVQS 90 (188)
T ss_pred CCceecccCCeeHHHHHHHHHHHcC-CCcEEEEeCCcHHHHHHHhccCCC--eEEEECcChhcCHHHHHHHHhc-CCCCC
Confidence 5899999999999999999998775 899999999876332333332333 333322 2356788999987 22235
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 161 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~ 161 (214)
+.+++++||+||++++.++++++.+...+..+ +.+... ++. ..|-.|+...+..+.+.
T Consensus 91 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~-~~~~~~-------~~~-------------~~Pl~~~~~~~~~l~~~- 148 (188)
T TIGR03310 91 DGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI-VVPLYK-------GKR-------------GHPVLFPRKLFPELLAL- 148 (188)
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE-EEeecC-------Ccc-------------CCCEEECHHHHHHHHhC-
Confidence 78999999999999999999998775543322 222211 111 03556776655543221
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHH
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLI 202 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~ 202 (214)
.+. .....++++....+..+.. ....++||||+||+.
T Consensus 149 --~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 149 --TGD--TGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred --CCC--ccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence 111 1223445555434444433 345789999999974
No 33
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.77 E-value=4e-17 Score=123.67 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=73.3
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||++++++|+|||+|+++++... +++|+|+++++... ...++..+..-. .+.++.+|++.|+..++ .+.+
T Consensus 17 ~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~-----~~~~~~~~v~~~~~~~G~~~si~~~l~~~~--~~~v 87 (181)
T cd02503 17 DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER-----YALLGVPVIPDEPPGKGPLAGILAALRAAP--ADWV 87 (181)
T ss_pred CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH-----HhhcCCcEeeCCCCCCCCHHHHHHHHHhcC--CCeE
Confidence 89999999999999999999875 79999999887521 223333322111 23467899999998875 6889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~ 106 (214)
+++.||+||+++++++.+++.+
T Consensus 88 lv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 88 LVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred EEEeCCcCCCCHHHHHHHHHhh
Confidence 9999999999999999999877
No 34
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.77 E-value=5.2e-17 Score=123.57 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccCCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.||+|++++|+|||.|+++++.. .+++|+|+++++.. ... ...++..+.. ..++.++.+|++.|+..++ .+
T Consensus 17 ~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~-~~~--~~~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~ 89 (186)
T TIGR02665 17 RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPE-RYA--QAGFGLPVVPDALADFPGPLAGILAGLRWAG--TD 89 (186)
T ss_pred CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHH-HHh--hccCCCcEEecCCCCCCCCHHHHHHHHHhcC--CC
Confidence 49999999999999999999974 48999999876542 111 1123333222 2344678999999998875 57
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++||+||++++.|+++++.+...++
T Consensus 90 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 118 (186)
T TIGR02665 90 WVLTVPCDTPFLPEDLVARLAAALEASDA 118 (186)
T ss_pred eEEEEecCCCcCCHHHHHHHHHHhhccCC
Confidence 89999999999999999999998764333
No 35
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.75 E-value=1.6e-16 Score=122.29 Aligned_cols=169 Identities=16% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~ 77 (214)
||+ +|+|++++|+|||+|+++++... +++|+|++++.+ ....... .+ +.++.+ +.++.+|+..|+..+
T Consensus 21 mg~--~K~ll~~~g~~ll~~~i~~l~~~--~~~ivvv~~~~~--~~~~~~~-~~--~~~i~~~~~~~G~~~si~~~l~~~ 91 (200)
T PRK02726 21 MGQ--DKALLPWQGVPLLQRVARIAAAC--ADEVYIITPWPE--RYQSLLP-PG--CHWLREPPPSQGPLVAFAQGLPQI 91 (200)
T ss_pred CCC--CceeeEECCEeHHHHHHHHHHhh--CCEEEEECCCHH--HHHhhcc-CC--CeEecCCCCCCChHHHHHHHHHhC
Confidence 554 89999999999999999999753 689999987542 2222211 12 333322 346789999999988
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHH
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLL 154 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l 154 (214)
+ .+++++++||+||+++++|+++++.+... +..+.+.+..+. .+ .|- .|++..+
T Consensus 92 ~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~---------------~Pl~~~~~~~~~ 148 (200)
T PRK02726 92 K--TEWVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAALPKQEK------GW---------------EPLCGFYRRRCL 148 (200)
T ss_pred C--CCcEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEEEecCCC------Cc---------------ccEEeeecHHHH
Confidence 5 47899999999999999999999977542 233333332211 01 232 2555544
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHH
Q 028081 155 KKGFELVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 155 ~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~ 206 (214)
..+..... +|. .....+++..+ +..++ .....++||||+||+.+..+
T Consensus 149 ~~l~~~~~-~g~--~~l~~~l~~~~--~~~v~~~~~~~~~ninTped~~~~~~~ 197 (200)
T PRK02726 149 PSLEQFIQ-QGG--RSFQGWLAQVP--VQELALSDPDMLFNCNTPEDLATIQGI 197 (200)
T ss_pred HHHHHHHH-hCC--ccHHHHHhhCC--ceEecCCCchhhccCCCHHHHHHHhhc
Confidence 44433222 221 11223344443 23333 23456899999999987654
No 36
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.75 E-value=2.2e-16 Score=135.97 Aligned_cols=206 Identities=19% Similarity=0.179 Sum_probs=136.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+...||+|++++|+|||.|+++++.+++ ++++++++++.. +.+.+.+.+.+ .+.++.. ..+..+++..|+..++
T Consensus 17 l~~~~pK~l~pi~g~pli~~~l~~l~~~g-i~~iiiv~~~~~-~~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l~ 93 (459)
T PRK14355 17 MKSDLVKVMHPLAGRPMVSWPVAAAREAG-AGRIVLVVGHQA-EKVREHFAGDG-DVSFALQEEQLGTGHAVACAAPALD 93 (459)
T ss_pred cCCCCCceeceeCCccHHHHHHHHHHhcC-CCeEEEEECCCH-HHHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 34467999999999999999999999885 899999998764 44555554322 3434322 2234678999998886
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEe--eeccccE----EEecCCCceeeecCccc-------hhhhc-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG--VPAKATI----KEANSESFVVRTLDRKT-------LWEMQ- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~--~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~- 144 (214)
...+.+++++||+||++++.++++++.+...++.+++ .+..++. ...+++|.+....+... .....
T Consensus 94 ~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 173 (459)
T PRK14355 94 GFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNS 173 (459)
T ss_pred ccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEE
Confidence 3346799999999999999999999987665543333 3333331 12344555654432110 01111
Q ss_pred CCcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhhc
Q 028081 145 TPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.-+.|+.+.+.+++..... ..++++|....+...|.++...+.+. .+++|+||+||..|+.++..
T Consensus 174 Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 174 GIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred EEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 2367777665555543221 22566766666667788888766543 48999999999999876654
No 37
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=9.3e-16 Score=115.76 Aligned_cols=182 Identities=19% Similarity=0.258 Sum_probs=116.4
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccH-HHHHHHHHhh
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQE 76 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~ 76 (214)
|||. .| |.|++|+|+|||.+++++++.++.+++|+|+|...+. +.+++.+...|. .+..|.... +.-...++++
T Consensus 12 mgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~--~vfrGs~~dVL~Rf~~a~~a 89 (241)
T COG1861 12 MGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGF--YVFRGSEEDVLQRFIIAIKA 89 (241)
T ss_pred ccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCe--eEecCCHHHHHHHHHHHHHh
Confidence 7885 45 9999999999999999999999999999999987754 456777777763 445554333 4445556666
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHH
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKK 156 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~ 156 (214)
.+ .+.|+-+.||.||++++.++.+++.+.+.++-.+.. .... -|. .-++|+...|..
T Consensus 90 ~~--~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~--~~~p-----~G~--------------~vEV~~a~~L~~ 146 (241)
T COG1861 90 YS--ADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN--TGAP-----LGT--------------DVEVMKARALKK 146 (241)
T ss_pred cC--CCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc--cCCc-----ccc--------------ceeeeehHHHHH
Confidence 54 678999999999999999999999876655421100 0000 010 123444444544
Q ss_pred HHHHHHhcCCCCCcHH-HHHH-hCC-CCeEEEecCC------CCcccCCHHHHHHHHHHhhc
Q 028081 157 GFELVNREGLEVTDDV-SIVE-HLK-HPVYITEGSY------TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 157 ~~~~~~~~~~~~~d~~-~~~~-~~g-~~i~~v~~~~------~~~~Idtp~Dl~~a~~~~~~ 209 (214)
+-..... .+ ..+.. ..+. +.+ .++.+++.+. .-+.|||++||++++++++.
T Consensus 147 a~k~~~e-~~-~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~~~~~vye~ 206 (241)
T COG1861 147 AAKEALE-AY-YREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFALAKAVYEY 206 (241)
T ss_pred hHhhccc-hh-hhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHHHHHHHHHH
Confidence 3222110 01 01111 1122 222 4556664332 34779999999999998764
No 38
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.70 E-value=1.6e-15 Score=126.83 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=107.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCe
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+.||+|++++|+|||+|+++++.. .+++|+|+++.+. +.+...............++.++.+|++.|++.+. .++
T Consensus 21 g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G~~~si~~gl~~~~--~~~ 95 (366)
T PRK14489 21 GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQGPLSGILAGLEHAD--SEY 95 (366)
T ss_pred CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCChHHHHHHHHHhcC--CCc
Confidence 369999999999999999999974 3789998776543 22332211111111123344578899999998875 578
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV 161 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~~~ 161 (214)
+++++||+||+++++++++++.+...+..+ +.+.. ++.. .|- .|+++.+..+.+ .
T Consensus 96 vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~-v~~~~--------g~~g-------------~Pl~aiy~~~~~~~l~~-~ 152 (366)
T PRK14489 96 LFVVACDTPFLPENLVKRLSKALAIEGADI-AVPHD--------GERA-------------HPLFALYHRSCLPALRR-Y 152 (366)
T ss_pred EEEeeCCcCCCCHHHHHHHHHHhhccCCeE-EEEec--------CCCc-------------eeeEEEEcHHHHHHHHH-H
Confidence 999999999999999999999765433322 22211 1111 244 566655544333 3
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec--C-CCCcccCCHHHHHHHHHHhh
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG--S-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~--~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
..+|. .....++.+. .+..++. + ...++||||+||+.+++...
T Consensus 153 l~~G~--~~l~~~l~~~--~~~~v~~~~~~~~~~nINTpeDl~~l~~~~~ 198 (366)
T PRK14489 153 LAEGE--RRLFDFFQRQ--RVRYVDLSTQKDAFFNVNTPEDLEQLRAIPD 198 (366)
T ss_pred HHhCC--ccHHHHHHhC--CcEEEeccCCccccccCCCHHHHHHHhhhhh
Confidence 33331 1111222332 3444432 2 34679999999999987743
No 39
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=2.3e-15 Score=130.29 Aligned_cols=205 Identities=16% Similarity=0.160 Sum_probs=131.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+...||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+...+ +.++.. ..+..++++.|+..+.
T Consensus 21 l~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~--i~~v~~~~~~Gt~~al~~~~~~l~ 96 (481)
T PRK14358 21 MKSALPKVLHPVAGRPMVAWAVKAARDLG-ARKIVVVTGHGA-EQVEAALQGSG--VAFARQEQQLGTGDAFLSGASALT 96 (481)
T ss_pred CCCCCCceecEECCeeHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhccCC--cEEecCCCcCCcHHHHHHHHHHhh
Confidence 45567999999999999999999999875 899999999865 44555554433 344432 2234788888888875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE--EeeeccccE----EEecCCCceeeecCcc-----ch--hhhc-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATI----KEANSESFVVRTLDRK-----TL--WEMQ- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i--~~~~~~~~~----~~~~~~g~v~~~~~r~-----~~--~~~~- 144 (214)
...+.+++++||+||+++.+++++++.+...++.+ .+.++.++. ...+++|.+....+.. .. ...+
T Consensus 97 ~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~ 176 (481)
T PRK14358 97 EGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNS 176 (481)
T ss_pred CCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEE
Confidence 22233788999999999999999999887655433 333443321 1234456665443211 00 0122
Q ss_pred CCcccChHHHHHHHHHHH---h-cCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVN---R-EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~---~-~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.-+.|+.+. .+++.... . +.++++|....+...|.++...+. ....++++++++++.++.+++.+
T Consensus 177 Giyi~~~~~-~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~ 247 (481)
T PRK14358 177 GVYVFDARA-PELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRR 247 (481)
T ss_pred EEEEEchHH-HHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 236777542 33333321 1 235677766666677777776543 35678899999888877666543
No 40
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.67 E-value=3.4e-15 Score=116.40 Aligned_cols=190 Identities=13% Similarity=0.156 Sum_probs=117.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEec--CCccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL--PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.. ++..+.+.. ...+..++++.|++.+.
T Consensus 18 ~~pK~ll~i~g~pli~~~l~~l~~~g-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~ 95 (223)
T cd06915 18 DLPKPLAPVAGRPFLEYLLEYLARQG-ISRIVLSVGYLA-EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP 95 (223)
T ss_pred CCCccccEECCcchHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC
Confidence 47999999999999999999999875 899999998764 445555543 133333332 23345778999998874
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccc---hhhhc-CCcc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQ-TPQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~-~p~~ 148 (214)
.+.+++++||+|+ + ..+.++++.+...+ +++.+.+..+. ...++++|.+....+... ..... .-+.
T Consensus 96 --~~~~lv~~~D~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~ 171 (223)
T cd06915 96 --EDQFLVLNGDTYF-D-VDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYL 171 (223)
T ss_pred --CCCEEEEECCccc-C-CCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcEEEEEEE
Confidence 3668999999987 3 46788888775433 34445454332 112344456554432110 01111 2366
Q ss_pred cChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 149 IKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 149 f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
|+...|... .. .+. ..++....+...| ++..++.+..+++||||+||..|+
T Consensus 172 ~~~~~l~~~-~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 172 LRKEILAEI-PA---DAFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred ECHHHHhhC-Cc---cCCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 776655432 11 111 1222222233345 788776667799999999999873
No 41
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.66 E-value=9.3e-15 Score=121.92 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=132.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.++||+|++++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.. ++.++.++.. ..+..++++.|+..+
T Consensus 18 ~~~pK~l~pv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l 96 (353)
T TIGR01208 18 FTRPKQLIPVANKPILQYAIEDLAEAG-ITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFL 96 (353)
T ss_pred cCCCccccEECCEeHHHHHHHHHHHCC-CCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999999885 8999999998332455665543 2333444422 234578899999888
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccc--h-hhhc-CCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT--L-WEMQ-TPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~--~-~~~~-~p~ 147 (214)
.. +.++++.||.|+ + ..+..+++.+...+ ..+.+.++.++ +...++++.+..+.++.. . .... .-+
T Consensus 97 ~~--~~~li~~gD~~~-~-~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy 172 (353)
T TIGR01208 97 GD--DDFVVYLGDNLI-Q-DGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLY 172 (353)
T ss_pred CC--CCEEEEECCeec-C-ccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEE
Confidence 52 346777899987 3 57888888876543 34555565543 222343445554432210 0 0111 236
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.|+. .+.+.+..... ..+++++....+...|.+|..+..+..|.+|+||+||..|+..+..+
T Consensus 173 ~~~~-~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~ 237 (353)
T TIGR01208 173 MFRP-LIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDE 237 (353)
T ss_pred EECH-HHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhh
Confidence 7776 44454543221 22456666566666788888877777799999999999999888654
No 42
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=9.6e-15 Score=113.92 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=142.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecCCcc--HHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLPGKE--RQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~sv~~al~~~ 77 (214)
...||||+|+.+||||.|+++.+..++ +++|.|+++++....++++.. .+|.++.++.++.. -.+++..|-+++
T Consensus 19 ~~~~KqLlpV~~KPmi~y~l~~L~~aG-I~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv 97 (286)
T COG1209 19 RVVPKQLLPVYDKPMIYYPLETLMLAG-IRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFV 97 (286)
T ss_pred ccCCcccceecCcchhHhHHHHHHHcC-CceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhc
Confidence 357999999999999999999999986 999999999876566666654 24667777665433 366677776777
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTP 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p 146 (214)
. .+-++++.||-=|-. .+.+.++.+.+ .++.+.+.++.|+- ...+++|++..+. ++|++ .+-.-
T Consensus 98 ~--~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNl-AvtGl 172 (286)
T COG1209 98 G--DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNL-AVTGL 172 (286)
T ss_pred C--CCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCce-eEEEE
Confidence 5 234566679997766 78888887765 56788888998873 2335455654433 33443 22223
Q ss_pred cccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 147 QVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
|.|....+.. .+... +.++++||....+...|.++..++....|+|+.|++||..|..++..
T Consensus 173 Y~~d~~Vf~~-~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 173 YFYDPSVFEA-IKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EEeChHHHHH-HHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 5666654433 33321 23478999999999999998888776689999999999999988753
No 43
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.65 E-value=3e-14 Score=112.69 Aligned_cols=200 Identities=18% Similarity=0.257 Sum_probs=123.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
++||+|++++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.. ++..+.+... ..+..+++..|...+.
T Consensus 20 ~~pK~llpv~~~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 98 (240)
T cd02538 20 VVSKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG 98 (240)
T ss_pred CCCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC
Confidence 67999999999999999999999875 8999998876543445554432 3334443322 2234677888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCccc---hhhhcC-Ccc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQT-PQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~~-p~~ 148 (214)
.+.++++.||+|+.+. .+.++++.+... ++.+.+.++.++ ...++++|.+..+.++.. .....+ -+.
T Consensus 99 --~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi 175 (240)
T cd02538 99 --DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYF 175 (240)
T ss_pred --CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEE
Confidence 3456777999998654 678888877543 344555555443 122344566654432210 011122 366
Q ss_pred cChHHHHHHHHHHHhc--C-CCCCcHHHHHHhCCC-CeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 149 IKPDLLKKGFELVNRE--G-LEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 149 f~~~~l~~~~~~~~~~--~-~~~~d~~~~~~~~g~-~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+...+ +.+.....+ + +++++....+...|. .+..+.....++||+||+||..|+.+++
T Consensus 176 ~~~~~l-~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 176 YDNDVF-EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred ECHHHH-HHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 776644 444432211 2 455665555555553 2333332367999999999999998875
No 44
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=1.3e-14 Score=124.75 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=126.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-c-CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-L-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+. +++|+|++++.. +.+.+.... .+.++ . ...+..+++++|+.++.
T Consensus 14 l~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~ai~~a~~~l~ 87 (448)
T PRK14357 14 MKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEA-ELVKKLLPE---WVKIFLQEEQLGTAHAVMCARDFIE 87 (448)
T ss_pred CCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHhccc---ccEEEecCCCCChHHHHHHHHHhcC
Confidence 4456899999999999999999999875 489999998764 344443321 22222 2 22235788999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecC---c----cchhhhcC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLD---R----KTLWEMQT 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~---r----~~~~~~~~ 145 (214)
. .+.+++++||+||++..+++++++.+.+.+ ..+.+.+..++. ...+ +|.+ +..+ + ...+..++
T Consensus 88 ~-~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~ 164 (448)
T PRK14357 88 P-GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINT 164 (448)
T ss_pred c-CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEe
Confidence 2 478999999999999999999999876543 345555555431 1123 3544 2221 1 11223444
Q ss_pred C-cccChHHHHHHHHHHHhc---C-CCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHHHHHHhhc
Q 028081 146 P-QVIKPDLLKKGFELVNRE---G-LEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 146 p-~~f~~~~l~~~~~~~~~~---~-~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
. |.|+.+.|.++++..... + ++++|....+ .++..... ...++++++|+||+.++.+++.
T Consensus 165 GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~ 231 (448)
T PRK14357 165 GIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM 231 (448)
T ss_pred EEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence 4 888888777766543221 2 3455544333 23554433 2357889999999999887753
No 45
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.65 E-value=2e-14 Score=120.37 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~ 79 (214)
|| .+|+|++++|||||.|+++++... +++|+|+++++....+ ..++..+..-. .+.++..++..|++...
T Consensus 188 mG--~~K~ll~~~Gk~ll~~~l~~l~~~--~~~vvV~~~~~~~~~~----~~~~v~~i~d~~~~~Gpl~gi~~al~~~~- 258 (369)
T PRK14490 188 MG--SDKALLSYHESNQLVHTAALLRPH--CQEVFISCRAEQAEQY----RSFGIPLITDSYLDIGPLGGLLSAQRHHP- 258 (369)
T ss_pred CC--CCcEEEEECCccHHHHHHHHHHhh--CCEEEEEeCCchhhHH----hhcCCcEEeCCCCCCCcHHHHHHHHHhCC-
Confidence 55 489999999999999999999753 6889998876642211 22343322211 13457888999987754
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
.+.++++.||+||+++++++.+++.......+++.. ...+|..... .-.|+...+..+..
T Consensus 259 -~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~~--------~~~~g~p~pl-----------~~~y~~~~~~~l~~ 318 (369)
T PRK14490 259 -DAAWLVVACDLPFLDEATLQQLVEGRNPFRFATAFR--------HPDSGRPEPL-----------CAIYEPKSRLRLLL 318 (369)
T ss_pred -CCcEEEEeCCcCCCCHHHHHHHHHhccCCCceEEEE--------cCCCCceEeE-----------EEeecHHHHHHHHH
Confidence 467899999999999999999998643222222111 0112321000 01233333333322
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHHhhccc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
... +|- .....+++..+ +..+. .+...++||||+||+.++..++.-+
T Consensus 319 ~~~-~gd--~~~~~~l~~~~--~~~v~~~~~~~f~NINTpeDl~~~~~~~~~~~ 367 (369)
T PRK14490 319 RHA-AGN--NSLRSFLATSR--IEELEPTDPEALQNINDPEEMDRAERALSTTK 367 (369)
T ss_pred HHH-hCC--ccHHHHHhhCC--eEEEcCCCchhcCCCCCHHHHHHHHHHHhhcC
Confidence 111 121 12233444433 33333 2345679999999999988776443
No 46
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.64 E-value=2.5e-14 Score=108.17 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCCCCCceeeeeCC--eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLG--QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~g--kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~ 77 (214)
||. +|.|++++| +|||+|+++++.. .+++|+|++++.. . . ...+..+.. ...+.+++.++..|+..+
T Consensus 1 mG~--dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~-~-~----~~~~~~~i~d~~~g~gpl~~~~~gl~~~ 70 (178)
T PRK00576 1 MGR--DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ-P-L----PELPAPVLRDELRGLGPLPATGRGLRAA 70 (178)
T ss_pred CCC--CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc-c-c----ccCCCCEeccCCCCCCcHHHHHHHHHHH
Confidence 664 999999999 9999999998763 4799999987643 1 1 122222211 112345677777777654
Q ss_pred -ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 -DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 -~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
....++++++.||+||+++++++++++.+...+
T Consensus 71 ~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 71 AEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred HhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 223689999999999999999999998765443
No 47
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.64 E-value=2e-14 Score=110.32 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccC
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~ 80 (214)
+.+|++++++| +|||+|+++.+... +++|+|+++++. + .++..+.. ..+..++..++..++....
T Consensus 23 G~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~---~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~~-- 90 (196)
T PRK00560 23 GENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKK---F-----EFNAPFLLEKESDLFSPLFGIINAFLTLQ-- 90 (196)
T ss_pred CCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchh---c-----ccCCcEEecCCCCCCCcHHHHHHHHHhcC--
Confidence 35899999999 99999999999864 689999988621 1 11111111 1122344566666765543
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGF 158 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~ 158 (214)
.++++++.||+||++++++++++.. .+..+ +.+.. ++.. .|- .|++..+..+.
T Consensus 91 ~~~vlv~~~D~P~i~~~~i~~l~~~---~~~~~-~~~~~--------~~~~-------------~Pl~al~~~~~~~~l~ 145 (196)
T PRK00560 91 TPEIFFISVDTPFVSFESIKKLCGK---ENFSV-TYAKS--------PTKE-------------HYLISLWHQSLLNALI 145 (196)
T ss_pred CCeEEEEecCcCcCCHHHHHHHHhc---CCCCE-EEEcc--------CCce-------------eeeEEEEcHHHHHHHH
Confidence 6889999999999999999998532 12111 12211 1110 244 67776666554
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHHhhcc
Q 028081 159 ELVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 159 ~~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.....+ .....+++..+ +..+. .+...+|||||+||+.++..++.+
T Consensus 146 ~~l~~~~---~~~~~ll~~~~--~~~v~~~~~~~~~dinT~eDl~~~~~~~~~~ 194 (196)
T PRK00560 146 YALKTQN---YRLSDLVKNTS--SQAVHFEDEEEFLNLNTLKDYELALQILKSR 194 (196)
T ss_pred HHHHhCC---ccHHHHHHHCC--cEEecCCCCccccCCCCHHHHHHHHHHHHHh
Confidence 3332221 12234555554 33333 334568999999999998776543
No 48
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.63 E-value=2.5e-14 Score=123.26 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=127.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++.+.+++ +++++|++++.. +.+++.+... ++.++.. ..+..++++.|+..+.
T Consensus 19 l~~~~pK~l~~i~gkpli~~~i~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~--~~~~i~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK09451 19 MYSDLPKVLHTLAGKPMVQHVIDAANELG-AQHVHLVYGHGG-DLLKQTLADE--PLNWVLQAEQLGTGHAMQQAAPFFA 94 (456)
T ss_pred CCCCCChhcceeCChhHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhhccC--CcEEEECCCCCCcHHHHHHHHHhhc
Confidence 44567999999999999999999998875 899999998764 4455544322 3334322 2234788888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEE---EecCCCceeeecCccch-------hhhcC-Cc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKTL-------WEMQT-PQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~---~~~~~g~v~~~~~r~~~-------~~~~~-p~ 147 (214)
+.+.+++++||+||+++++++++++.....+.++...+..++.. ..+++|.+.+..+.... ....+ -+
T Consensus 95 -~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~~~~~~~~~GiY 173 (456)
T PRK09451 95 -DDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGIL 173 (456)
T ss_pred -cCCcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECCCCChHHhhccEEEEEEE
Confidence 24679999999999999999999987655554555556555411 12234566544332110 11122 37
Q ss_pred ccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--------CCCCcccCCHHHHHHHH
Q 028081 148 VIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--------SYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~--------~~~~~~Idtp~Dl~~a~ 204 (214)
.|+.+.|.++++.... ..++++|....+...|.++..... ...+.++.++++|..++
T Consensus 174 i~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~ 242 (456)
T PRK09451 174 VANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAE 242 (456)
T ss_pred EEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 7887777766654321 225566665566667788876632 11245677777666543
No 49
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.62 E-value=4.9e-14 Score=111.06 Aligned_cols=198 Identities=18% Similarity=0.252 Sum_probs=125.8
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecCC--ccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~sv~~al~~~ 77 (214)
.+.||+|++++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.++. ++..+.++.+. .+..+|++.|+..+
T Consensus 19 ~~~pK~l~~i~g~~li~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i 96 (236)
T cd04189 19 YTRPKQLIPVAGKPIIQYAIEDLREAG-IEDIGIVVGPTG-EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFL 96 (236)
T ss_pred cCCCceeeEECCcchHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhc
Confidence 468999999999999999999999875 899999998854 455555543 23344444332 23478899998877
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecCcc----chhhhcCCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRK----TLWEMQTPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~r~----~~~~~~~p~ 147 (214)
. + +-++++.||..+ +. .+..+++.+...+ .++++.+..++. ..++ +|.+..+.+.. ..+..-.-+
T Consensus 97 ~-~-~~~li~~~D~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~~~Giy 171 (236)
T cd04189 97 G-D-EPFVVYLGDNLI-QE-GISPLVRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVY 171 (236)
T ss_pred C-C-CCEEEEECCeec-Cc-CHHHHHHHHHhcCCceEEEEEECCCcccceEEEEc-CCeEEEEEECCCCCCCCEEEEEEE
Confidence 5 2 346778899976 43 4667777665433 345555654431 1233 34554433211 001111225
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+.+.+. .+..... ..+++++....+...|.+|..++.+..+++|+||+||..|+..+-
T Consensus 172 ~~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 172 AFTPAIFD-AISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EeCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 56655443 3332211 124566666666667888888776667999999999999998753
No 50
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.62 E-value=4.3e-15 Score=115.69 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=79.0
Q ss_pred CCC-CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCcc-HHHHHHHHHhhc
Q 028081 1 MGA-NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE-RQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~-~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sv~~al~~~ 77 (214)
||| +.| |+|++|+|||||+|+++++++++.+++|+|+|+++. +.+.+..+|..+.+..+... ..+....++...
T Consensus 8 ~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~ 84 (217)
T PF02348_consen 8 GGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE---IDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHF 84 (217)
T ss_dssp SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH---HHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH---HHHHHHHcCCeeEEcChhhcCCcccHHHHHHHh
Confidence 576 466 999999999999999999999999999999999865 45677788876655544222 233334444443
Q ss_pred cc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 DF-NSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 ~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
.. +.++++.++||.||++++.++++++.+.+..
T Consensus 85 ~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 85 LADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp TCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred hhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 21 2358999999999999999999999887653
No 51
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.62 E-value=1.1e-13 Score=105.37 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+|.+.+++|+|||+|++++++.. ++.++|+.+... +. ...++.++.. ...+.++.++++.|++... .++
T Consensus 19 ~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~----~~~~g~~vv~D~~~~~GPL~Gi~~al~~~~--~~~ 89 (192)
T COG0746 19 RDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR----YAEFGLPVVPDELPGFGPLAGILAALRHFG--TEW 89 (192)
T ss_pred cccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh----hhccCCceeecCCCCCCCHHHHHHHHHhCC--CCe
Confidence 589999999999999999999864 465555554442 21 2334544322 1122377999999999886 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
++++.||+||++++.+++++..+.+.++++.. +. .+|.+.... -.+ ...+...+.....
T Consensus 90 ~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~-~~--------~~g~~~Pl~-----------aly-~~~l~~~l~~~l~ 148 (192)
T COG0746 90 VLVLPCDMPFIPPELVERLLSAFKQTGAAIVP-AH--------DDGRLEPLF-----------ALY-HRALLPALEEYLA 148 (192)
T ss_pred EEEEecCCCCCCHHHHHHHHHhhcccCCcEEE-eC--------CCCceeeEE-----------EEe-hHHHHHHHHHHHH
Confidence 99999999999999999999987654432211 11 134322110 112 2223333332222
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHH
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAER 205 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~ 205 (214)
++- .....++++.+.....+.... ..+.||||+||..++.
T Consensus 149 ~g~--~~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 149 KGE--RRLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred hCC--ccHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhc
Confidence 221 112245555553332233333 6788999999998764
No 52
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.61 E-value=1.8e-14 Score=106.94 Aligned_cols=104 Identities=24% Similarity=0.364 Sum_probs=82.1
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~ 79 (214)
||+ ||+|++++|+|||+|+++++.+++ +++|+|+++++. +...+..++..+.... .+.+...|++.|+..+.
T Consensus 12 mg~--~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~~---~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~- 84 (160)
T PF12804_consen 12 MGG--PKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEEE---IYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP- 84 (160)
T ss_dssp GTS--CGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTHH---HHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-
T ss_pred CCC--CccceeECCccHHHHHHHHhhccC-CceEEEecChHH---HHHHHhccCceEEEeccccCChHHHHHHHHHhcc-
Confidence 554 999999999999999999999886 899999999842 4444555554443322 14678999999999884
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
..+.++++.||+||+++++++++++.+.+.+.
T Consensus 85 ~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~ 116 (160)
T PF12804_consen 85 SSEPVLVLPCDQPFLSPELLRRLLEALEKSPA 116 (160)
T ss_dssp TSSEEEEEETTETTS-HHHHHHHHHHHHHTTT
T ss_pred cCCCcEEEeCCccccCHHHHHHHHHHHhccCC
Confidence 36889999999999999999999999875444
No 53
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.61 E-value=8e-14 Score=112.84 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=123.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||.|+++.+..++ +++|+|++.+...+.+++.... ++.++.++.. ..+..+++..|...+.
T Consensus 19 ~~pK~Llpv~gkPmI~~~L~~l~~aG-i~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~ 97 (286)
T TIGR01207 19 AVSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIG 97 (286)
T ss_pred CCCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEecCCcHHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999999885 8999887765443445555432 3444544433 2334788888888885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCc-----cchhhhcC-C
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQT-P 146 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~-p 146 (214)
. +.++++.+|.+|.. ..+..+++.+... ++.+.+.++.++ +...+++|.+..+.++ +++ ..+ -
T Consensus 98 ~--~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~--~~~Gi 172 (286)
T TIGR01207 98 G--DPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNY--AVTGL 172 (286)
T ss_pred C--CCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCE--EEEEE
Confidence 2 33455569999854 5788888876543 344555666554 2223445666544321 211 112 3
Q ss_pred cccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.|+... .+.+..... ..+++||....+...|.-........ .|+||.||+||..|+..++
T Consensus 173 Yi~~~~i-~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 173 YFYDNRV-VEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEEchHH-HHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 6677654 333333211 23567776666555563222222333 4999999999999988775
No 54
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.61 E-value=7.2e-14 Score=102.27 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.-|+|++++|||||.|+++++++ .+++|+|++++.. ..+++.+...+.++...+ |.+...-+..+++.+. .-+
T Consensus 17 ~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~t-p~t~~~~~~~gv~vi~tp-G~GYv~Dl~~al~~l~---~P~ 89 (177)
T COG2266 17 PEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHT-PKTKEYLESVGVKVIETP-GEGYVEDLRFALESLG---TPI 89 (177)
T ss_pred CcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCC-HhHHHHHHhcCceEEEcC-CCChHHHHHHHHHhcC---Cce
Confidence 34999999999999999999987 4799999999876 567777777665554344 4566788899999886 368
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++..+|.||+.+.+|+.+++.+.
T Consensus 90 lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 90 LVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEEecccccCCHHHHHHHHHHHh
Confidence 99999999999999999999876
No 55
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.60 E-value=1.3e-13 Score=111.76 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=125.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||.|.++.+..++ +++|+|++.+...+.++++..+ ++.++.++.. ..+..+++..|...+.
T Consensus 23 ~~pK~Llpv~gkPmI~~~l~~l~~aG-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~ 101 (292)
T PRK15480 23 AVSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG 101 (292)
T ss_pred CCCceEeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999999885 8999877665433445555432 3444555433 2234677888888875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCc-----cchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~p~ 147 (214)
. .+ ++++.||.+|.. ..+..+++.+... ++.+.+.++.++ +...+++|.+..+.+. +++ ..-.-+
T Consensus 102 ~-~~-~~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~-a~~GiY 177 (292)
T PRK15480 102 G-DD-CALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNY-AVTGLY 177 (292)
T ss_pred C-CC-EEEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCE-EEEEEE
Confidence 2 34 455669998864 4688888877543 344445566554 2223445666543221 221 111236
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+...+ +..+.... .++++||....+.+.|.......... .|+||.||+||..|+..++
T Consensus 178 ~~~~~v~-~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 178 FYDNDVV-EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEChHHH-HHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 6776544 33332211 23678877666666665443344444 5999999999999998876
No 56
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.58 E-value=3.3e-13 Score=107.58 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=121.4
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc---CCcEEE---------ec---------
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKF---------SL--------- 61 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~---~~~~~~---------~~--------- 61 (214)
..+||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+++.+.+. +..+.+ ..
T Consensus 17 ~~~pK~llpv~~~p~i~~~~~~~~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (253)
T cd02524 17 ELKPKPMVEIGGRPILWHIMKIYSHYG-HNDFILCLGYKG-HVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVT 94 (253)
T ss_pred CCCCceEEEECCEEHHHHHHHHHHhCC-CceEEEECCCCH-HHHHHHHHhhhhhcCceeEeecccceeeeccccccccee
Confidence 468999999999999999999999884 899999999875 4455555432 211111 11
Q ss_pred ---C--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc--c--EEEecCCCcee
Q 028081 62 ---P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA--T--IKEANSESFVV 132 (214)
Q Consensus 62 ---~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~--~--~~~~~~~g~v~ 132 (214)
. ..+..++++.|.+.+.. .+.++++.||.- .+. .+..+++.+...++.+++....+ . ....+++|.+.
T Consensus 95 ~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~~~-dl~~ll~~h~~~~~~~tl~~~~~~~~~g~v~~d~~g~V~ 171 (253)
T cd02524 95 LVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-SDV-NINALIEFHRSHGKLATVTAVHPPGRFGELDLDDDGQVT 171 (253)
T ss_pred ecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-ECC-CHHHHHHHHHHcCCCEEEEEecCCCcccEEEECCCCCEE
Confidence 0 12246788889888752 157899999974 344 55888887765544333322221 1 12334456665
Q ss_pred eecCccch--hhhcC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 133 RTLDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 133 ~~~~r~~~--~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.+.+.... ..+.+ -+.|....+. .+... ...+.+|....+.+.| ++...+....+.+|+|++||..|+.+++.
T Consensus 172 ~~~ekp~~~~~~i~~Giyi~~~~l~~-~l~~~--~~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 172 SFTEKPQGDGGWINGGFFVLEPEVFD-YIDGD--DTVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred EEEECCCCCCceEEEEEEEECHHHHH-hhccc--cchhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHc
Confidence 43321100 01112 2556655442 22221 1223445544555555 66666655679999999999999999875
Q ss_pred cc
Q 028081 210 SS 211 (214)
Q Consensus 210 ~~ 211 (214)
..
T Consensus 248 ~~ 249 (253)
T cd02524 248 GK 249 (253)
T ss_pred CC
Confidence 54
No 57
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.56 E-value=2.2e-13 Score=106.41 Aligned_cols=189 Identities=15% Similarity=0.077 Sum_probs=114.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh--cCCcEEEecCC---ccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPG---KERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~sv~~al~~~~ 78 (214)
++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.. ++..+.+.... .+...++..|+..+.
T Consensus 19 ~~pK~llpi~g~~li~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~ 96 (221)
T cd06422 19 TRPKPLVPVAGKPLIDHALDRLAAAG-IRRIVVNTHHLA-DQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG 96 (221)
T ss_pred CCCCceeeECCEEHHHHHHHHHHHCC-CCEEEEEccCCH-HHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC
Confidence 58999999999999999999999885 899999998764 445555543 34444433322 234678999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHH--hcCCeEEe--eecccc----EEEecCCCceeeecCccchhhhc-CCccc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLG--VPAKAT----IKEANSESFVVRTLDRKTLWEMQ-TPQVI 149 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~--~~~~~i~~--~~~~~~----~~~~~~~g~v~~~~~r~~~~~~~-~p~~f 149 (214)
.+.++++.||.++- . .+.++++.+. ..++.+++ .+..+. ....+++|.+.....+....... .-+.|
T Consensus 97 --~~~~lv~~~D~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~ 172 (221)
T cd06422 97 --DEPFLVVNGDILWD-G-DLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQIL 172 (221)
T ss_pred --CCCEEEEeCCeeeC-C-CHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEE
Confidence 26688999999773 3 5667777665 23333322 233221 12234445554332211101111 23566
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 150 KPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
+...+.... ...+++++....+...+ ++........|.+|+||+||..|
T Consensus 173 ~~~~l~~l~----~~~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 173 SPELFAGIP----PGKFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred cHHHHhhCC----cCcccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 765544321 11234455444444444 45545455679999999999764
No 58
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.54 E-value=3.2e-13 Score=102.39 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=78.4
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.||++++++|+|||.|+++++.++. +++|+|++++.. +.++..+...+. ......+.+...++..|++.+. ..+.+
T Consensus 17 ~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~-~~~~~~l~~~~~-~~~~~~g~G~~~~l~~al~~~~-~~~~~ 92 (183)
T TIGR00454 17 VEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHT-PKTEEYINSAYK-DYKNASGKGYIEDLNECIGELY-FSEPF 92 (183)
T ss_pred CCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhcCc-EEEecCCCCHHHHHHHHhhccc-CCCCE
Confidence 6899999999999999999998875 899999998754 445555544332 2222455667888999988653 24679
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+++.||+||+++++|+.+++.+...
T Consensus 93 lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 93 LVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred EEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
No 59
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.54 E-value=1.1e-12 Score=104.65 Aligned_cols=197 Identities=12% Similarity=0.099 Sum_probs=120.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-----CCcEE-------------------E
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-----NVDLK-------------------F 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-----~~~~~-------------------~ 59 (214)
++||+|++++|+|||.|+++.+.++ ++++|+|++++.. +.+.+.+.+. +..+. +
T Consensus 19 ~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (254)
T TIGR02623 19 LRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTL 96 (254)
T ss_pred CCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCH-HHHHHHHHhhhhcccCeeEEecccccccccccCCccceee
Confidence 5899999999999999999999987 4999999999765 4455554432 11111 1
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----EEEecCCCceee
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVR 133 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~----~~~~~~~g~v~~ 133 (214)
... ..+..++++++...+. .+.++++.||. +...++..+++.+.+.++.+++..+.++ ....+ +|.+..
T Consensus 97 ~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~~~~~~~~yG~v~~d-~~~V~~ 171 (254)
T TIGR02623 97 VDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLE-GEQVTS 171 (254)
T ss_pred eecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEEC-CCeEEE
Confidence 111 1123677888888775 35578999997 3456788888877665543322222222 11223 345544
Q ss_pred ecCccch--hhhcC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 134 TLDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 134 ~~~r~~~--~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.++... ..+.+ -++|+...| +.+... ...+.+|....+...| ++.....+..+.+|+||++++.++..++..
T Consensus 172 ~~Ekp~~~~~~i~~Giyi~~~~il-~~l~~~--~~~~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 172 FQEKPLGDGGWINGGFFVLNPSVL-DLIDGD--ATVWEQEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred EEeCCCCCCCeEEEEEEEEcHHHH-hhcccc--CchhhhhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 4322100 11122 367776655 333321 1122344444444445 577666667799999999999999988754
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 248 ~ 248 (254)
T TIGR02623 248 R 248 (254)
T ss_pred C
Confidence 3
No 60
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.52 E-value=3.3e-13 Score=107.03 Aligned_cols=202 Identities=21% Similarity=0.255 Sum_probs=127.3
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeC-CCchHHHHHHHHhc---CCcEEEe--cCCccHHHHHHHHHh
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCD-PSYSDIFEETKEKI---NVDLKFS--LPGKERQDSVYSGLQ 75 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~-~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~sv~~al~ 75 (214)
...||+|++++|+ |||.|+++.+..++ ++++++++. +.. +.+.+.++.. +.++.++ ..+.+..++++.+..
T Consensus 18 ~~~pK~ll~i~g~~pli~~~l~~l~~~g-~~~ii~V~~~~~~-~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~ 95 (248)
T PF00483_consen 18 DTIPKPLLPIGGKYPLIDYVLENLANAG-IKEIIVVVNGYKE-EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALD 95 (248)
T ss_dssp TTSSGGGSEETTEEEHHHHHHHHHHHTT-CSEEEEEEETTTH-HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHH
T ss_pred hccccccceecCCCcchhhhhhhhcccC-CceEEEEEeeccc-ccccccccccccccccceeeecccccchhHHHHHHHH
Confidence 4689999999999 99999999999875 899555444 443 5566666543 2234443 334456888999888
Q ss_pred hcccC--CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC----eEEeeecccc----EEEecCCCceeeecCccch----h
Q 028081 76 EVDFN--SELVCIHDSARPLVLSKDVQKVLMDALRVGA----AVLGVPAKAT----IKEANSESFVVRTLDRKTL----W 141 (214)
Q Consensus 76 ~~~~~--~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~----~i~~~~~~~~----~~~~~~~g~v~~~~~r~~~----~ 141 (214)
.+..+ .+.++++.||.-+-. .+..+++.+...++ .+...+..++ ....+++|.|..+.++... .
T Consensus 96 ~i~~~~~~~~~lv~~gD~i~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~ 173 (248)
T PF00483_consen 96 FIEEEDDDEDFLVLNGDIIFDD--DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASN 173 (248)
T ss_dssp HHTTSEE-SEEEEETTEEEEST--THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSS
T ss_pred HhhhccccceEEEEeccccccc--hhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccce
Confidence 88632 235899999995544 78899988876443 2233343332 2234555777665532111 1
Q ss_pred hhc-CCcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhh
Q 028081 142 EMQ-TPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 142 ~~~-~p~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++ .-+.|+...+....+.... .+ .+++|....+.+.|..+..+..+. .|+||+||+||..|+..+.
T Consensus 174 ~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 174 LINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred eccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 122 2367877766655342211 11 235555555666776776555444 6999999999999987664
No 61
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.51 E-value=1.6e-12 Score=102.06 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC----CccHHHHHHHHHhhccc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP----GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sv~~al~~~~~ 79 (214)
.+||++++++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+... ..+.++.. ..+...|+..|+..+.
T Consensus 18 ~~pK~l~~~~g~~li~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~- 93 (229)
T cd02523 18 DRPKCLLEINGKPLLERQIETLKEAG-IDDIVIVTGYKK-EQIEELLKKY-PNIKFVYNPDYAETNNIYSLYLARDFLD- 93 (229)
T ss_pred CCCceeeeECCEEHHHHHHHHHHHCC-CceEEEEeccCH-HHHHHHHhcc-CCeEEEeCcchhhhCcHHHHHHHHHHcC-
Confidence 46999999999999999999999884 899999999864 4455555432 12333322 2345788999988873
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----EEEe-cCCCceeeecCcc-----chhhhcCCccc
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEA-NSESFVVRTLDRK-----TLWEMQTPQVI 149 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~----~~~~-~~~g~v~~~~~r~-----~~~~~~~p~~f 149 (214)
+.++++.||.++ +++.++.+++. ..+.++.+.+..+. .... .+++.+....... .....-.-+.|
T Consensus 94 --~~~lv~~~D~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~~~~~Giy~~ 168 (229)
T cd02523 94 --EDFLLLEGDVVF-DPSILERLLSS--PADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNLEEIQGEYVGISKF 168 (229)
T ss_pred --CCEEEEeCCEec-CHHHHHHHHcC--CCCCeEEEccCcccccccceeeecCccceEeecccCCCcchhceEEEeEEEE
Confidence 568889999986 67666665531 22334444432211 1111 1112232222111 00111123566
Q ss_pred ChHHHHHHHHH---HHh---cCCCCCcHHHHHHh-CCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 150 KPDLLKKGFEL---VNR---EGLEVTDDVSIVEH-LKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 150 ~~~~l~~~~~~---~~~---~~~~~~d~~~~~~~-~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+...+..+... ... ...++++....+.. .+.++..+.. ..|.+||+|+||..|+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 169 SPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred CHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 66554433221 111 12345554433333 3455555555 6899999999998874
No 62
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.51 E-value=1.1e-12 Score=105.30 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=122.2
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----------c--------------CCcEE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------I--------------NVDLK 58 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----------~--------------~~~~~ 58 (214)
.++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.... . +..+.
T Consensus 19 ~~~pK~llpv~gkpli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (267)
T cd02541 19 KAIPKEMLPIVDKPVIQYIVEEAVAAG-IEDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIH 96 (267)
T ss_pred cCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCch-HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEE
Confidence 368999999999999999999999874 899999999865 333333311 0 22333
Q ss_pred EecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH-HHHHHHHHHHhcCCe-EEeeecc--cc----EEEecC-
Q 028081 59 FSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-DVQKVLMDALRVGAA-VLGVPAK--AT----IKEANS- 127 (214)
Q Consensus 59 ~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~-~i~~~i~~~~~~~~~-i~~~~~~--~~----~~~~~~- 127 (214)
++.. ..+..+++..|...+.. +.++++.||.++...+ .++++++.+...++. +.+.++. +. ....++
T Consensus 97 ~~~~~~~~Gt~~al~~~~~~i~~--~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 174 (267)
T cd02541 97 YVRQKEPLGLGHAVLCAKPFIGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKGEKI 174 (267)
T ss_pred EEEcCCCCChHHHHHHHHHHhCC--CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcCccceEEEeecC
Confidence 3322 13347888899888852 5578889999987764 789999887654433 3333332 11 112232
Q ss_pred ---CCceeeecCccc---h--hhhc-CCcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCCCCcccC
Q 028081 128 ---ESFVVRTLDRKT---L--WEMQ-TPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVT 195 (214)
Q Consensus 128 ---~g~v~~~~~r~~---~--~~~~-~p~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~Id 195 (214)
++.+....++.. . .... .-+.|+...+.. +..... .+ +++++....+...| ++...+.+..+.||+
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~dig 252 (267)
T cd02541 175 DGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDI-LENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCG 252 (267)
T ss_pred CCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHH-HHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCC
Confidence 124443332210 0 1111 236777765443 332111 12 34555554454555 787766666799999
Q ss_pred CHHHHHHHHHHhh
Q 028081 196 TPDDLLIAERILN 208 (214)
Q Consensus 196 tp~Dl~~a~~~~~ 208 (214)
||+||..|..-+.
T Consensus 253 t~~~y~~a~~~~~ 265 (267)
T cd02541 253 NKLGYLKATVEFA 265 (267)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999886553
No 63
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.51 E-value=4.6e-13 Score=110.65 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+|.|++++|+||++|+++.+... +++|+|+++++.. ... ...+..+.. ...+.++..|++.|++... .+.
T Consensus 176 ~dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~~---~~~-~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~ 247 (346)
T PRK14500 176 KDKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQW---QGT-PLENLPTLPDRGESVGPISGILTALQSYP--GVN 247 (346)
T ss_pred CCcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchHh---hhc-cccCCeEEeCCCCCCChHHHHHHHHHhCC--CCC
Confidence 599999999999999999998753 7899999875421 110 000111111 1113468999999998765 345
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++++.||+||+++++++.+++.+.
T Consensus 248 ~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 248 WLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred EEEEECCcCCCCHHHHHHHHHhhh
Confidence 688999999999999999998764
No 64
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.51 E-value=1.8e-12 Score=105.41 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=119.7
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDL 57 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~ 57 (214)
..+||+|++++|||||+|+++.+.+++ +++|+|++++.. +.+.+.... ++.++
T Consensus 22 ~~~PKpLvpV~gkPiI~~vl~~l~~~G-i~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (297)
T TIGR01105 22 KAIPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTI 99 (297)
T ss_pred CCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceE
Confidence 468999999999999999999999875 999999999875 344444321 13345
Q ss_pred EEecCC--ccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCH-------HHHHHHHHHHHhcC-CeEEeeecc-cc----E
Q 028081 58 KFSLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVG-AAVLGVPAK-AT----I 122 (214)
Q Consensus 58 ~~~~~~--~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~-------~~i~~~i~~~~~~~-~~i~~~~~~-~~----~ 122 (214)
.++... .+..++++.|...+.+ .+ ++++.||. +++. -.+.++++.+.+.+ .++.+.+.. ++ +
T Consensus 100 ~~~~q~~~lGtg~Av~~a~~~l~~-~~-flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGv 176 (297)
T TIGR01105 100 MNVRQAQPLGLGHSILCARPVVGD-NP-FVVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSV 176 (297)
T ss_pred EEeeCCCcCchHHHHHHHHHHhCC-CC-EEEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceE
Confidence 454332 2347889999988852 34 45556886 4442 47888888776444 344444442 32 1
Q ss_pred EEe----cCCCce---eeecCccc------hhhhc-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEE
Q 028081 123 KEA----NSESFV---VRTLDRKT------LWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYIT 185 (214)
Q Consensus 123 ~~~----~~~g~v---~~~~~r~~------~~~~~-~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v 185 (214)
... +.+|.+ ....++.. ...+. .-+.|+...+. .+..... ++++++|....+...| ++...
T Consensus 177 v~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~-~v~~~ 254 (297)
T TIGR01105 177 IQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQ-SVDAM 254 (297)
T ss_pred EEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcC-CEEEE
Confidence 112 123433 22221100 01112 23677776544 3443211 1256777666555544 67766
Q ss_pred ecCCCCcccCCHHHHHHHHHH
Q 028081 186 EGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 186 ~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
..+..|+||.+|+||..|..-
T Consensus 255 ~~~g~w~DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 255 LMTGDSYDCGKKMGYMQAFVK 275 (297)
T ss_pred EeccEEECCCCHHHHHHHHHH
Confidence 556679999999999998543
No 65
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.51 E-value=1.6e-13 Score=105.25 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=67.7
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 94 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v 94 (214)
+|||.|+++++..+. +++++|+++++. +...+..++..+ +...+.+..+++.+|++++..+++.++++.||+||+
T Consensus 30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~---~~~~~~~~~v~~-i~~~~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l 104 (195)
T TIGR03552 30 LAMLRDVITALRGAG-AGAVLVVSPDPA---LLEAARNLGAPV-LRDPGPGLNNALNAALAEAREPGGAVLILMADLPLL 104 (195)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEECCCHH---HHHHHHhcCCEE-EecCCCCHHHHHHHHHHHhhccCCeEEEEeCCCCCC
Confidence 699999999999875 588999888543 334444455433 222233678999999988754457899999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028081 95 LSKDVQKVLMDALRVG 110 (214)
Q Consensus 95 ~~~~i~~~i~~~~~~~ 110 (214)
++++|+++++.+...+
T Consensus 105 ~~~~i~~l~~~~~~~~ 120 (195)
T TIGR03552 105 TPRELKRLLAAATEGD 120 (195)
T ss_pred CHHHHHHHHHhcccCC
Confidence 9999999998775433
No 66
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=5e-13 Score=102.48 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=117.7
Q ss_pred CCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEe-CCCchHHHHHHHHhcCCcEEEecCCc----cHHHHHHHHHhh
Q 028081 2 GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLPGK----ERQDSVYSGLQE 76 (214)
Q Consensus 2 ~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~sv~~al~~ 76 (214)
|-+.||.|.+++|+|+|.|+++++.+.+ +++++||+ +... +.+++..++++....++.+.. ....|+..|.+.
T Consensus 18 g~~~PK~Lvev~gr~ii~~~i~~L~~~g-i~e~vvV~~g~~~-~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 18 GPDIPKALVEVGGREIIYRTIENLAKAG-ITEFVVVTNGYRA-DLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CCCCCchhhhcCCeEeHHHHHHHHHHcC-CceEEEEeccchH-HHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhh
Confidence 3468999999999999999999999886 89999999 5554 667777777765555543311 125678888888
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc----cEEEecCCCceeeecCccchhhhc-C-CcccC
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA----TIKEANSESFVVRTLDRKTLWEMQ-T-PQVIK 150 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~----~~~~~~~~g~v~~~~~r~~~~~~~-~-p~~f~ 150 (214)
+. .-++++++|. +..+..+++++++- ....++...|... -.+...++|.+..+-.+-+-+..+ + -..|+
T Consensus 96 ~~---~~fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~~~e~iGi~~l~ 170 (239)
T COG1213 96 MD---GRFILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTEYDGEDIGIFILS 170 (239)
T ss_pred hc---CcEEEEeCCE-eecHHHHHHHHhCc-CCcEEEeccccccccCceeEEEecCCEEehhcCCcccccceeeeeEEec
Confidence 75 2378889999 66899999998753 1111222222211 111113355554332111111100 0 12334
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEec---CCCCcccCCHHHHHHHHHHhh
Q 028081 151 PDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG---SYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~---~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+.+...++...... ..+-.....+.+.+...+.. ...|++||||||+..|++.+-
T Consensus 171 ~~i~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 171 DSIFEDTYELLVERS--EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred hHHHHHHHHHHhhhh--hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 445555544432211 11122334445555554432 246899999999999998764
No 67
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.2e-12 Score=107.53 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=124.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||+|+++.+.+.+ +++++|++++.. +.+++.+.+ ++.++.++.. ..+...+++++...+.
T Consensus 21 ~~PKPllpI~gkPii~~~l~~L~~~G-v~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~ 98 (358)
T COG1208 21 DRPKPLLPIAGKPLIEYVLEALAAAG-VEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLG 98 (358)
T ss_pred CCCcccceeCCccHHHHHHHHHHHCC-CcEEEEEeccch-HHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcC
Confidence 58999999999999999999998875 999999998876 556666665 2445555432 2234778899998886
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--E--EEecCC-CceeeecCcc---ch--hhhcC-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--I--KEANSE-SFVVRTLDRK---TL--WEMQT- 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~--~--~~~~~~-g~v~~~~~r~---~~--~~~~~- 145 (214)
. +.++++.||..+ +.+ ++.+++.++..++ .+......++ . ...+.+ +.+.....+. .. ..+++
T Consensus 99 ~--~~f~v~~GDv~~-~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~G 174 (358)
T COG1208 99 G--DDFLVLNGDVLT-DLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAG 174 (358)
T ss_pred C--CcEEEEECCeee-ccC-HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeE
Confidence 2 568889999944 444 8999988876532 3333444443 1 122212 3454332221 00 01111
Q ss_pred CcccChHHHHHHHHHHHhcCCCCCc-HHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 146 PQVIKPDLLKKGFELVNREGLEVTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 146 p~~f~~~~l~~~~~~~~~~~~~~~d-~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
-+.|+...+. .+... ....+.+ ....+.+.|..+..+..+..|+||+||+||..|++.+..+
T Consensus 175 iyi~~~~v~~-~i~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 175 IYIFDPEVFD-YIEKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EEEECHHHhh-hcccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 2566665554 22211 1122333 2334445565677666666999999999999999988754
No 68
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.48 E-value=6.2e-12 Score=102.61 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---c----------------------CCcEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---I----------------------NVDLK 58 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~----------------------~~~~~ 58 (214)
.+||++++++|||+|.|+++.+.+++ +++|+|++++.. +.+.+.+.. + +..+.
T Consensus 28 ~~pK~l~pv~g~pii~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~ 105 (302)
T PRK13389 28 AIPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_pred CCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEE
Confidence 68999999999999999999999885 999999999875 334444431 0 11122
Q ss_pred EecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCC------CCHHHHHHHHHHHHhcCC-eEEeeeccccE--EE--e
Q 028081 59 FSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPL------VLSKDVQKVLMDALRVGA-AVLGVPAKATI--KE--A 125 (214)
Q Consensus 59 ~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~------v~~~~i~~~i~~~~~~~~-~i~~~~~~~~~--~~--~ 125 (214)
++.. ..+..++++.|...+. .+-++++.||.++ +....+..+++.+.+.++ ++.+.++.++. .. .
T Consensus 106 ~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~~~~~~~~~yGvv~~ 183 (302)
T PRK13389 106 QVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC 183 (302)
T ss_pred EeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEEEEcccCCcceEEEe
Confidence 2221 1234677888877764 2446788899987 355788899987765443 44444554331 11 1
Q ss_pred cC-------CCceeeecCccc-----hhhhcC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028081 126 NS-------ESFVVRTLDRKT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY 189 (214)
Q Consensus 126 ~~-------~g~v~~~~~r~~-----~~~~~~-p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~ 189 (214)
++ ++.+..+.+... -..+.+ -++|+...+ +.+..... +.++++|....+... .++.....+.
T Consensus 184 ~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~-~~v~~~~~~G 261 (302)
T PRK13389 184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEK-ETVEAYHMKG 261 (302)
T ss_pred cCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHc-CCEEEEEeee
Confidence 21 123433322110 011222 367777654 44543221 124567666555554 4677666566
Q ss_pred CCcccCCHHHHHHHHHHh
Q 028081 190 TNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~~ 207 (214)
.|+||+||+||..|..-+
T Consensus 262 ~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 262 KSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 899999999999986554
No 69
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.48 E-value=1.6e-12 Score=101.38 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=113.9
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.+.||+|++++|+|||.|+++.+...+ +++|+|++++.. +.+.+...+ ++..+.++.. ..+..+++..+....
T Consensus 17 ~~~pK~ll~~~g~pli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~ 94 (220)
T cd06426 17 ENTPKPMLKVGGKPILETIIDRFIAQG-FRNFYISVNYLA-EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP 94 (220)
T ss_pred CCCCCccCeECCcchHHHHHHHHHHCC-CcEEEEECccCH-HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhC
Confidence 368999999999999999999999874 899999998764 445554432 2333444332 122245554444332
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----EEEecCCCceeeecCccc-hhhhc-CCccc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRKT-LWEMQ-TPQVI 149 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~----~~~~~~~g~v~~~~~r~~-~~~~~-~p~~f 149 (214)
.+.++++.||. +....++.+++.+...+. ++.+.+.... +...+ +|.+..+.+... -.... .-+.|
T Consensus 95 ---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~Giy~~ 168 (220)
T cd06426 95 ---TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETE-GGRITSIEEKPTHSFLVNAGIYVL 168 (220)
T ss_pred ---CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEC-CCEEEEEEECCCCCCeEEEEEEEE
Confidence 35688889995 556678899987765443 3333332211 11223 355544332111 00111 23567
Q ss_pred ChHHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 150 KPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 150 ~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+...+.. +. ..+ +++++....+.+.|.++...+.+..+.+|+||+||..|+
T Consensus 169 ~~~~~~~-i~---~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 169 EPEVLDL-IP---KNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred cHHHHhh-cC---CCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 7654432 11 122 345554444556677788877777899999999998763
No 70
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.48 E-value=2.9e-12 Score=102.52 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=117.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----------------------c--CCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------------------I--NVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----------------------~--~~~~~~ 59 (214)
++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.... + ...+.+
T Consensus 20 ~~pK~llpi~g~pli~~~l~~l~~~g-i~~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (260)
T TIGR01099 20 AIPKEMLPIVDKPLIQYVVEEAVEAG-IEDILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFY 97 (260)
T ss_pred CCCceeEEECCEEHHHHHHHHHHhCC-CCEEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEE
Confidence 68999999999999999999999875 899999999875 334443321 0 112233
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCH-HHHHHHHHHHHhcCCe-EEeeecc--cc----EEEec---
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-KDVQKVLMDALRVGAA-VLGVPAK--AT----IKEAN--- 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~-~~i~~~i~~~~~~~~~-i~~~~~~--~~----~~~~~--- 126 (214)
+.. ..+..+++..+...+. .+.++++.||.|+... +.++.+++.+...++. +.+.++. +. +...+
T Consensus 98 ~~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~g~v~~d~~~ 175 (260)
T TIGR01099 98 VRQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVIDGEGVE 175 (260)
T ss_pred EecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhcccCceEEecccc
Confidence 321 2235778888888774 3457888999999876 5899999988665543 3333322 11 11222
Q ss_pred C-CCceeeecCcc---c--hhhhc-CCcccChHHHHHHHHHHHh-c-CCCCCcHHHHHHhCCCCeEEEecCCCCcccCCH
Q 028081 127 S-ESFVVRTLDRK---T--LWEMQ-TPQVIKPDLLKKGFELVNR-E-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP 197 (214)
Q Consensus 127 ~-~g~v~~~~~r~---~--~~~~~-~p~~f~~~~l~~~~~~~~~-~-~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp 197 (214)
+ +|.+..+.+.. . -..+. .-++|+...+..+...... . .++++|....+...+ ++...+.+..+.||.||
T Consensus 176 ~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~g~w~digs~ 254 (260)
T TIGR01099 176 EGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE-TVYAYKFKGKRYDCGSK 254 (260)
T ss_pred CCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC-CEEEEEcceEEEeCCCH
Confidence 1 24554433211 0 01111 2367777654443221111 1 245565544444444 68777666789999999
Q ss_pred HHHHH
Q 028081 198 DDLLI 202 (214)
Q Consensus 198 ~Dl~~ 202 (214)
+||..
T Consensus 255 ~~y~~ 259 (260)
T TIGR01099 255 LGYLK 259 (260)
T ss_pred HHHhh
Confidence 99975
No 71
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.45 E-value=1.6e-11 Score=98.16 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=119.0
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.+||+|+|++|||||.|+++.+.+...+++|+|++++.. +.+.+.+.. .+..+.++.. ..+..+++..+...+
T Consensus 20 ~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 20 DVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred CCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 679999999999999999999998434899999998754 445555432 2333444332 122367777887777
Q ss_pred cc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEec-CCCceeeecCccc---hhhhc
Q 028081 78 DF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEAN-SESFVVRTLDRKT---LWEMQ 144 (214)
Q Consensus 78 ~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~-~~g~v~~~~~r~~---~~~~~ 144 (214)
.. ..+.++++.||.++ + ..++.+++.+...++ .+.+.++ .++ +...+ ++|.+....++.. -..+.
T Consensus 99 ~~~~~~~~lv~~gD~~~-~-~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~ 176 (257)
T cd06428 99 LAGNPSAFFVLNADVCC-D-FPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLIN 176 (257)
T ss_pred hccCCCCEEEEcCCeec-C-CCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEE
Confidence 42 23568889999984 3 368889988766543 3333333 111 12234 3456654433211 01111
Q ss_pred C-CcccChHHHHHHHHHHHhc-----------------C-CCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 145 T-PQVIKPDLLKKGFELVNRE-----------------G-LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~~-----------------~-~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+ -+.|+.+.+. .+...... + +.+ +|....+...+ ++...+.+..|.||.||++|..+.
T Consensus 177 ~Giyi~~~~~~~-~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~-~v~~~~~~g~w~dig~~~~~~~a~ 254 (257)
T cd06428 177 CGVYLFSPEIFD-TIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSG-KLYVYKTDDFWSQIKTAGSAIYAN 254 (257)
T ss_pred EEEEEECHHHHH-HHhhhccccccccccccccccccccceeeehhhhhhHHhccC-CEEEecCCCeeecCCCHHHHHhHh
Confidence 2 3677777553 33322111 1 112 34333333333 677776677899999999999988
Q ss_pred HH
Q 028081 205 RI 206 (214)
Q Consensus 205 ~~ 206 (214)
+.
T Consensus 255 ~~ 256 (257)
T cd06428 255 RL 256 (257)
T ss_pred hc
Confidence 65
No 72
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.44 E-value=1e-11 Score=97.54 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhc--CCcEEEec-CCccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKI--NVDLKFSL-PGKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~~~~sv~~al~~~ 77 (214)
.++||+|++++|+|||+|+++.+.+++ +++++|++..+.. ..+.+..... +..+.... ...+..+++..|+..+
T Consensus 17 ~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~l 95 (231)
T cd04183 17 YTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTVLLAADLI 95 (231)
T ss_pred CCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhhc
Confidence 368999999999999999999999886 8999999875432 1122222221 22332222 2344578888888877
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc---EEEecCCCceeeecCccc--hhhhcCCcccC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT---IKEANSESFVVRTLDRKT--LWEMQTPQVIK 150 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~---~~~~~~~g~v~~~~~r~~--~~~~~~p~~f~ 150 (214)
.. .+.++++.||. +.+.+ +..++..+...+ +.+.+.+...+ ...++++|.+..+.+... -+..-.-+.|+
T Consensus 96 ~~-~~~~lv~~~D~-i~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~Giy~~~ 172 (231)
T cd04183 96 DN-DDPLLIFNCDQ-IVESD-LLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAEKEPISDLATAGLYYFK 172 (231)
T ss_pred CC-CCCEEEEecce-eeccC-HHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEEcCCCCCccEeEEEEEC
Confidence 42 35678899998 55544 556665554322 23333333222 112344566654432211 01111235666
Q ss_pred hH-HHHHHHHHHH-----h-cCCCCCcHHHHHHhCCCCeEEEec-CCCCcccCCHHHHH
Q 028081 151 PD-LLKKGFELVN-----R-EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLL 201 (214)
Q Consensus 151 ~~-~l~~~~~~~~-----~-~~~~~~d~~~~~~~~g~~i~~v~~-~~~~~~Idtp~Dl~ 201 (214)
.. .+.+.+.... . ..+++++....+...|.+|..+.. +..|.+|+||+||+
T Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 173 SGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred cHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 54 3434333211 1 124556655556667778887765 56899999999984
No 73
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.44 E-value=1.1e-11 Score=104.49 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=123.1
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCC-----cEEE----ecC-----Ccc
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLKF----SLP-----GKE 65 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~-----~~~~----~~~-----~~~ 65 (214)
.+||+|+|++|| |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++. .+.+ ... ..+
T Consensus 23 ~~PK~llpv~gk~pli~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G 100 (380)
T PRK05293 23 NIAKPAVPFGGKYRIIDFTLSNCANSG-IDTVGVLTQYQP-LELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKG 100 (380)
T ss_pred CCccceeeeCCceeehhHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCC
Confidence 689999999999 89999999999875 999999999875 455555432 111 1222 111 023
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~ 136 (214)
..++++.|+..+.. ..+.++++.||. +....+.++++.+...++ .+.+... .++ +...+++|.+....+
T Consensus 101 ta~al~~a~~~l~~~~~~~~lV~~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~e 178 (380)
T PRK05293 101 TAHAIYQNIDYIDQYDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEE 178 (380)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEe
Confidence 46888888888752 136788999997 445578888887765443 2332222 222 112344455544322
Q ss_pred ccc---hhhhcC-CcccChHHHHHHHHHHHhcC---C-CCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 137 RKT---LWEMQT-PQVIKPDLLKKGFELVNREG---L-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 137 r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~---~-~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
+.. .....+ -+.|+...|..++....... . +.+|....+...|.++..+..+..|.+|+||+||..|+..+
T Consensus 179 Kp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~ 257 (380)
T PRK05293 179 KPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMEL 257 (380)
T ss_pred CCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHH
Confidence 110 111122 36788776666554432111 1 22344444555677888776666899999999999998544
No 74
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.43 E-value=1.6e-11 Score=96.59 Aligned_cols=195 Identities=12% Similarity=0.163 Sum_probs=118.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----cCCcEEEec--CCccHHHHHHHHHhhc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSL--PGKERQDSVYSGLQEV 77 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~sv~~al~~~ 77 (214)
+.||+|++++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.. .+..+.+.. ...+..+++..|...+
T Consensus 20 ~~pK~llpv~g~pli~~~l~~l~~~g-~~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~ 97 (233)
T cd06425 20 TVPKPLVEFCNKPMIEHQIEALAKAG-VKEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL 97 (233)
T ss_pred CCCCccCeECCcchHHHHHHHHHHCC-CcEEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence 68999999999999999999999875 899999999775 344444442 233333321 1233478899998888
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecC-CCceeeecCcc--ch-hhhcC-C
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANS-ESFVVRTLDRK--TL-WEMQT-P 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~-~g~v~~~~~r~--~~-~~~~~-p 146 (214)
....+.++++.||..+ + ..++++++.++..+ +.+.+.+..++ +..+++ +|.+....+.. .. ....+ -
T Consensus 98 ~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Gi 175 (233)
T cd06425 98 GDDDEPFFVLNSDVIC-D-FPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGI 175 (233)
T ss_pred ccCCCCEEEEeCCEee-C-CCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence 5322346778899754 2 33678888776543 34555555442 222343 45554432211 00 01112 3
Q ss_pred cccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 147 QVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
+.|+.+.|.. +.. ....+ .+....+... .++...+.+..+.||+||+||..|+..+
T Consensus 176 yi~~~~~l~~-l~~---~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 176 YILNPSVLDR-IPL---RPTSIEKEIFPKMASE-GQLYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EEECHHHHHh-ccc---CcccchhhhHHHHHhc-CCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 6777766543 221 11112 2222223333 4787776667899999999999998754
No 75
>PRK10122 GalU regulator GalF; Provisional
Probab=99.41 E-value=3.3e-11 Score=98.18 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=118.9
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDL 57 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~ 57 (214)
..+||+|+|++|||||+|+++.+.+++ +++|+|++++.. +.+.+.... ++.++
T Consensus 22 ~~~PK~llpi~gkpiI~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i 99 (297)
T PRK10122 22 KAIPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTI 99 (297)
T ss_pred CCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCh-HHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceE
Confidence 468999999999999999999999985 999999998865 334443321 12334
Q ss_pred EEecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH-------HHHHHHHHHHhcCC-eEEeeec-ccc----E
Q 028081 58 KFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-------DVQKVLMDALRVGA-AVLGVPA-KAT----I 122 (214)
Q Consensus 58 ~~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~-------~i~~~i~~~~~~~~-~i~~~~~-~~~----~ 122 (214)
.++.+ ..+..+++.+|..++. +.+++ ++.||. +++++ .+..+++.+...++ ++.+... .++ +
T Consensus 100 ~~~~q~~~lGtg~al~~a~~~l~-~~~fv-vi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGv 176 (297)
T PRK10122 100 MNVRQGQPLGLGHSILCARPAIG-DNPFV-VVLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSV 176 (297)
T ss_pred EEeecCCcCchHHHHHHHHHHcC-CCCEE-EEECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceE
Confidence 44322 2234788999998884 23454 445887 66542 68889988765543 3333332 121 1
Q ss_pred EEec----CCCc---eeeecCccc------hhhhcC-CcccChHHHHHHHHHHHhc--C-CCCCcHHHHHHhCCCCeEEE
Q 028081 123 KEAN----SESF---VVRTLDRKT------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEVTDDVSIVEHLKHPVYIT 185 (214)
Q Consensus 123 ~~~~----~~g~---v~~~~~r~~------~~~~~~-p~~f~~~~l~~~~~~~~~~--~-~~~~d~~~~~~~~g~~i~~v 185 (214)
...+ .+|. +....+... ...+.+ -++|+.+.+.. +...... + ++++|....+... .++...
T Consensus 177 v~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~~e~~ltd~i~~l~~~-~~v~~~ 254 (297)
T PRK10122 177 IQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPE-LERTEPGAWGRIQLTDAIAELAKK-QSVDAM 254 (297)
T ss_pred EEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHH-HHhCCCCCCCeeeHHHHHHHHHhC-CCEEEE
Confidence 1222 1332 332221110 001122 36777765443 3332111 2 4567665555544 467766
Q ss_pred ecCCCCcccCCHHHHHHHHHHh
Q 028081 186 EGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 186 ~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
..+..|+||.+|+|+..|..-+
T Consensus 255 ~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 255 LMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EeCCEEEcCCCHHHHHHHHHHH
Confidence 6666899999999999887655
No 76
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.40 E-value=1.3e-11 Score=103.57 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcE------E-Ee-cC---CccHH
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDL------K-FS-LP---GKERQ 67 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~------~-~~-~~---~~~~~ 67 (214)
.++||+|+|++|| |||+|+++.+.+++ +++|+|++++...+.+.+.+.. ++.+. . +. .. +++..
T Consensus 21 ~~~PKpLlpV~gk~PlIe~~l~~L~~~G-i~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~ 99 (369)
T TIGR02092 21 KVRPLASLPFGGRYRLIDFPLSNMVNAG-IRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGK 99 (369)
T ss_pred cCCcccccccCCeeeEEEEEhhhhhccC-CCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChH
Confidence 4689999999999 99999999999985 9999999998652256665542 22221 1 11 11 11234
Q ss_pred HHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC-e-EEeeecc--cc-----EEEecCCCceeeecC-
Q 028081 68 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA-A-VLGVPAK--AT-----IKEANSESFVVRTLD- 136 (214)
Q Consensus 68 ~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~-~-i~~~~~~--~~-----~~~~~~~g~v~~~~~- 136 (214)
.++..+.+.+.. ..+.++++.||. +....+..+++.+...++ + +.+.++. ++ +...+++|.+.....
T Consensus 100 ~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~ 177 (369)
T TIGR02092 100 RYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQN 177 (369)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEecccc
Confidence 567777777641 236789999998 555678888888766544 2 3333433 11 122333454433211
Q ss_pred --ccchhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHh--CCCCeEEEecCCCCcccCCHHHHHHHHH-Hhh
Q 028081 137 --RKTLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH--LKHPVYITEGSYTNIKVTTPDDLLIAER-ILN 208 (214)
Q Consensus 137 --r~~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~g~~i~~v~~~~~~~~Idtp~Dl~~a~~-~~~ 208 (214)
...-.... .-+.|+.+.|.+++......+. .+....++.. .+.++.....+..|+||+||+||..|+. +++
T Consensus 178 ~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~-~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~ 254 (369)
T TIGR02092 178 LNPEEEENISLDIYIVSTDLLIELLYECIQRGK-LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD 254 (369)
T ss_pred CCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCc-cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhC
Confidence 00000111 2367777666555543222221 1111122222 2456776666667899999999999984 443
No 77
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.40 E-value=1.8e-11 Score=104.04 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=122.2
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC---CcEEEe---cC--------CccH
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN---VDLKFS---LP--------GKER 66 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~---~~~~~~---~~--------~~~~ 66 (214)
+.+||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. +. ....++ .. ..+.
T Consensus 24 ~~~PK~llPv~gk~plI~~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGt 101 (407)
T PRK00844 24 ADRAKPAVPFGGSYRLIDFVLSNLVNSG-YLRIYVLTQYKS-HSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGS 101 (407)
T ss_pred cCCcccceeeCCcceEhHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCC
Confidence 5789999999999 99999999999975 999999999875 445555532 11 111111 10 1223
Q ss_pred HHHHHHHHhhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecCc
Q 028081 67 QDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR 137 (214)
Q Consensus 67 ~~sv~~al~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~r 137 (214)
.++++.++..+..+ .+.++++.||. +....+.++++.+...++ .+.+..+ .++ +...+++|.+....++
T Consensus 102 a~al~~a~~~i~~~~~~~~lv~~gD~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eK 179 (407)
T PRK00844 102 ADAIYQSLNLIEDEDPDYVVVFGADH--VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEK 179 (407)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEEC
Confidence 67888888888532 36788999998 445678889988766544 2233222 222 2223445666544322
Q ss_pred cc----------hhhhcC-CcccChHHHHHHHHHHHh---cCCCC-CcHHHHHHhCCCCeEEEec------------CCC
Q 028081 138 KT----------LWEMQT-PQVIKPDLLKKGFELVNR---EGLEV-TDDVSIVEHLKHPVYITEG------------SYT 190 (214)
Q Consensus 138 ~~----------~~~~~~-p~~f~~~~l~~~~~~~~~---~~~~~-~d~~~~~~~~g~~i~~v~~------------~~~ 190 (214)
.. ....++ -+.|+.+.|.+++..... ..+++ +|....+...+ ++..... ...
T Consensus 180 p~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~ 258 (407)
T PRK00844 180 PADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGY 258 (407)
T ss_pred CCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCE
Confidence 10 011222 378888776665553211 11333 45444444444 5655432 346
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
|.||.+|+||..|+..+-
T Consensus 259 w~Digt~~~y~~a~~~lL 276 (407)
T PRK00844 259 WRDVGTIDAYYDAHMDLL 276 (407)
T ss_pred EEECCCHHHHHHHHHHHh
Confidence 899999999999876644
No 78
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.35 E-value=3.7e-11 Score=92.49 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=104.7
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCc-----EEEec--------CCcc
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVD-----LKFSL--------PGKE 65 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~-----~~~~~--------~~~~ 65 (214)
++.||+|++++|+ |||+|+++.+..++ +++|+|++++.. +.+.+.+.. ++.+ +.+.. ...+
T Consensus 17 ~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 94 (200)
T cd02508 17 KKRAKPAVPFGGRYRLIDFPLSNMVNSG-IRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRG 94 (200)
T ss_pred cCCcceeeEECCeeeeHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccC
Confidence 4689999999999 99999999999875 899999999875 445555432 1111 22322 1123
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhc
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 144 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~ 144 (214)
..++++.|...+.. +.+.++++.||+ +....+.++++.+...++.+++.-. +. .
T Consensus 95 ta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~~~~t~~~~------~~-~---------------- 149 (200)
T cd02508 95 TADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESGADITVVYK------AS-M---------------- 149 (200)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEh------hc-C----------------
Confidence 47889999888742 246788999999 5667899999877665443322111 11 1
Q ss_pred CCcccChHHHHHHHHHHHhc-C-CCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 145 TPQVIKPDLLKKGFELVNRE-G-LEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~~-~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
.++.|+.+.+..++...... + .+++|....+.+. .++.....+..|+||
T Consensus 150 g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 150 GIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred EEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEEeCCeEecC
Confidence 25677776665554432212 2 4566665555544 467766555556664
No 79
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.32 E-value=1.4e-10 Score=90.00 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.++||++++++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.. ++..+.++.. ..+..++++.|+..+
T Consensus 17 ~~~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~ 94 (217)
T cd04181 17 DTRPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFL 94 (217)
T ss_pred cCCCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhc
Confidence 357999999999999999999999886 899999999764 445555543 2334544433 234578899998887
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccch---hhhc-CCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKTL---WEMQ-TPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~~---~~~~-~p~ 147 (214)
. .+.++++.||.- .+. .+..+++.+...+ +.+.+.+..+. ....+++|.+..+.++... .... .-+
T Consensus 95 ~--~~~~lv~~~D~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy 170 (217)
T cd04181 95 G--DDDFLVVNGDVL-TDL-DLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIY 170 (217)
T ss_pred C--CCCEEEEECCee-cCc-CHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEE
Confidence 3 467899999994 344 4677777665443 34445554332 1223444566544322110 0111 125
Q ss_pred ccChHHHHHHHHHHHhc-CCCCCcHHHHHHhCCCCeEEEecCCCCcccC
Q 028081 148 VIKPDLLKKGFELVNRE-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVT 195 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~~-~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Id 195 (214)
.|+...+ +.+.....+ ..++++....+... .++..++.+..+.||.
T Consensus 171 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 171 IFEPEIL-DYIPEILPRGEDELTDAIPLLIEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred EECHHHH-HhhhhcCCcccccHHHHHHHHHhc-CCEEEEEcCCEEecCC
Confidence 6776554 444432111 23344444434333 5777776666677663
No 80
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.31 E-value=1.3e-10 Score=97.30 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=119.5
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC------cEEEec------C---CccH
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------DLKFSL------P---GKER 66 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~------~~~~~~------~---~~~~ 66 (214)
+.||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. ++. .+.+.. . ..+.
T Consensus 18 ~~pK~llpv~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt 95 (361)
T TIGR02091 18 RRAKPAVPFGGKYRIIDFPLSNCINSG-IRRIGVLTQYKS-HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGT 95 (361)
T ss_pred CCccccceecceeeEeeehhhhhhhcC-CceEEEEeccCh-HHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCc
Confidence 589999999999 89999999999885 999999999875 345554432 110 122211 0 0223
Q ss_pred HHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceeeecCc
Q 028081 67 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLDR 137 (214)
Q Consensus 67 ~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~~~~r 137 (214)
.++++.|+..+.. ..+.++++.||. +....+..+++.+...++ .+.+.+.. +. +..++++|.+..+.+.
T Consensus 96 ~~al~~a~~~~~~~~~~~~lv~~gD~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek 173 (361)
T TIGR02091 96 ADAVYQNLDLIEDYDPEYVLILSGDH--IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173 (361)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEEC
Confidence 6788888887742 236688899998 445568888887765433 33333332 11 2223444555433221
Q ss_pred ----cch------hhhc-CCcccChHHHHHHHHHHHhcC---CCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHH
Q 028081 138 ----KTL------WEMQ-TPQVIKPDLLKKGFELVNREG---LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLI 202 (214)
Q Consensus 138 ----~~~------~~~~-~p~~f~~~~l~~~~~~~~~~~---~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~ 202 (214)
... +... .-+.|+...|...+....+.+ ..+ ++....+...+ ++..+..+..|.+|+|++||..
T Consensus 174 p~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~w~digt~~~~~~ 252 (361)
T TIGR02091 174 PANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEG-SVQAYLFSGYWRDVGTIDSFWE 252 (361)
T ss_pred CCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcC-ceEEEeeCCEEEECCCHHHHHH
Confidence 111 0112 246778777655554432111 111 23333333333 6776665677999999999999
Q ss_pred HHHHhh
Q 028081 203 AERILN 208 (214)
Q Consensus 203 a~~~~~ 208 (214)
|+..+-
T Consensus 253 a~~~~l 258 (361)
T TIGR02091 253 ANMDLV 258 (361)
T ss_pred HHHHHh
Confidence 976654
No 81
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.30 E-value=1.7e-10 Score=98.71 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=120.9
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-c--C---Cc-EEEec--C----C---cc
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--N---VD-LKFSL--P----G---KE 65 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~--~---~~-~~~~~--~----~---~~ 65 (214)
+.+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. + + .. +.+.. . . .+
T Consensus 22 ~~~PK~Llpi~gk~plI~~~L~~l~~~G-i~~vivv~~~~~-~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lG 99 (429)
T PRK02862 22 KLRAKPAVPLAGKYRLIDIPISNCINSG-INKIYVLTQFNS-ASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQG 99 (429)
T ss_pred cCCcceeeEECCeeEEeHHHHHHHHHCC-CCEEEEEecCCH-HHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccC
Confidence 4689999999999 99999999999985 999999999764 445555432 1 0 01 11111 0 0 23
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~~~~ 136 (214)
..++++.++..+.. ..+.++++.||. +. ..++..+++.+...++ .+.+.+.. ++ +...+++|.+..+.+
T Consensus 100 Ta~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~E 177 (429)
T PRK02862 100 TADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSE 177 (429)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEE
Confidence 46788888887752 235789999999 54 4578888887766544 23333332 11 122344455543322
Q ss_pred ccc------------------------hhhhc-CCcccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCCC
Q 028081 137 RKT------------------------LWEMQ-TPQVIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSYT 190 (214)
Q Consensus 137 r~~------------------------~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~i~~v~~~~~ 190 (214)
... .+..+ .-++|+...|..++.... ....+. +....+ ..+.++.....+..
T Consensus 178 kp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~dil~~l-~~~~~v~~~~~~g~ 255 (429)
T PRK02862 178 KPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEIIPEA-IRDYKVQSYLFDGY 255 (429)
T ss_pred CCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHHHHHH-hccCcEEEEEeCCE
Confidence 110 01122 237788877765554321 001111 111122 24567777766678
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
+.+|+||++|..++..+.
T Consensus 256 w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 256 WEDIGTIEAFYEANLALT 273 (429)
T ss_pred EEeCCCHHHHHHHHHHHH
Confidence 999999999999986654
No 82
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.29 E-value=3.1e-10 Score=96.98 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=121.1
Q ss_pred CCCceeeeeCCee-hHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC-------CcEEEec-------C--Ccc
Q 028081 4 NMPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN-------VDLKFSL-------P--GKE 65 (214)
Q Consensus 4 ~~~K~l~~l~gkp-li~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~-------~~~~~~~-------~--~~~ 65 (214)
.+||+|+|++|+| ||.|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++ ..+.+.. . ..+
T Consensus 35 ~~PK~llpv~gkp~lI~~~l~~l~~~G-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lG 112 (425)
T PRK00725 35 KRAKPAVYFGGKFRIIDFALSNCINSG-IRRIGVLTQYKA-HSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRG 112 (425)
T ss_pred CCcceeEEECCEEEEhHHHHHHHHHCC-CCeEEEEecCCH-HHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccC
Confidence 6899999999997 9999999999875 899999999875 444444432 21 0111111 0 022
Q ss_pred HHHHHHHHHhhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~ 136 (214)
..+++++|+..+... .+.++++.||. +...++..+++.+...++ .+.+.++ .++ +...+++|.+....+
T Consensus 113 Ta~al~~a~~~l~~~~~d~~lVl~gD~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~E 190 (425)
T PRK00725 113 TADAVYQNLDIIRRYDPKYVVILAGDH--IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVE 190 (425)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCe--EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEE
Confidence 367788888887532 46789999998 445678999988766544 3333333 222 222344455654432
Q ss_pred ccc----------hhhhcC-CcccChHHHHHHHHHHHh--cC-CC-CCcHHHHHHhCCCCeEEEec-----------CCC
Q 028081 137 RKT----------LWEMQT-PQVIKPDLLKKGFELVNR--EG-LE-VTDDVSIVEHLKHPVYITEG-----------SYT 190 (214)
Q Consensus 137 r~~----------~~~~~~-p~~f~~~~l~~~~~~~~~--~~-~~-~~d~~~~~~~~g~~i~~v~~-----------~~~ 190 (214)
+.. ...... -+.|+.+.|..++..... ++ .+ .+|....+...+ ++..... +..
T Consensus 191 Kp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~g~~~~~~~~~~gy 269 (425)
T PRK00725 191 KPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPY 269 (425)
T ss_pred CCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC-cEEEEEecCCccccccccCCe
Confidence 210 111222 378888877665544221 11 22 344444444333 5654432 246
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
|.||.+|++|..++..+.
T Consensus 270 w~digt~~~y~~an~~ll 287 (425)
T PRK00725 270 WRDVGTLDAYWQANLDLA 287 (425)
T ss_pred EEECCCHHHHHHHHHHHc
Confidence 899999999999986653
No 83
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.29 E-value=1.4e-10 Score=99.35 Aligned_cols=202 Identities=12% Similarity=0.022 Sum_probs=123.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-c--CCc-------EEEec--C-------
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--NVD-------LKFSL--P------- 62 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~--~~~-------~~~~~--~------- 62 (214)
..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. + +.. +.+.. .
T Consensus 22 ~~~PK~llpv~g~~plId~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (436)
T PLN02241 22 KRRAKPAVPIGGNYRLIDIPMSNCINSG-INKIYVLTQFNS-ASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGW 99 (436)
T ss_pred cCCcccceEeCCcceEehHHHHHHHhCC-CCEEEEEeccCH-HHHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCCcc
Confidence 4689999999997 99999999999875 999999999865 445555442 1 100 11111 1
Q ss_pred CccHHHHHHHHHhhcccC----CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------cEEEecCCCc
Q 028081 63 GKERQDSVYSGLQEVDFN----SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESF 130 (214)
Q Consensus 63 ~~~~~~sv~~al~~~~~~----~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~--i~~~~~~~------~~~~~~~~g~ 130 (214)
..+..++++.++..+++. .+.++++.||. + ....+.++++.+.+.++. +.+.++.. .+..++++|.
T Consensus 100 ~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v-~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~ 177 (436)
T PLN02241 100 FQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-L-YRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGR 177 (436)
T ss_pred ccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-E-EccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCC
Confidence 112256677766555421 35688999998 4 345788999888765552 33333321 1222344555
Q ss_pred eeeecCc---cc---------------------hhhhcC-CcccChHHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEE
Q 028081 131 VVRTLDR---KT---------------------LWEMQT-PQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYI 184 (214)
Q Consensus 131 v~~~~~r---~~---------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~i~~ 184 (214)
+....+. .. .....+ -+.|+.+.|..+++...... ...+|....+...|.+++.
T Consensus 178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~ 257 (436)
T PLN02241 178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257 (436)
T ss_pred EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence 5433221 10 011122 36778777766655432111 1223444445556778887
Q ss_pred EecCCCCcccCCHHHHHHHHHHhh
Q 028081 185 TEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 185 v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
...+..|.+|++|+||..++..+.
T Consensus 258 ~~~~gyw~dIg~~~~y~~a~~~~l 281 (436)
T PLN02241 258 YLFDGYWEDIGTIKSFYEANLALT 281 (436)
T ss_pred EeeCCEEEECCCHHHHHHHHHHHh
Confidence 776678999999999999987654
No 84
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.18 E-value=5.8e-09 Score=83.62 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=121.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC----CcEEEec-----CCccHHHHHHHHH
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN----VDLKFSL-----PGKERQDSVYSGL 74 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~sv~~al 74 (214)
.+||++.+++++|||.|.++++.+++ +++|++.+..........+.+.|+ +++.... +.+++++.++.-|
T Consensus 29 t~pKPlVpfgn~pmI~hqieal~nsG-i~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L 107 (371)
T KOG1322|consen 29 TRPKPLVPFGNKPMILHQIEALINSG-ITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFL 107 (371)
T ss_pred cCCCcccccCcchhhHHHHHHHHhCC-CcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHh
Confidence 57999999999999999999999985 999999999876334455555554 3332222 2333455555544
Q ss_pred hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccEEE----ecC-CCceeeecCcc-chhh--hc
Q 028081 75 QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKE----ANS-ESFVVRTLDRK-TLWE--MQ 144 (214)
Q Consensus 75 ~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~~~----~~~-~g~v~~~~~r~-~~~~--~~ 144 (214)
...+ ..-++++.+|.=..= .+..+++.+..++ ..+.+.++.++.++ .++ .|.+.+..+.- .+.. ++
T Consensus 108 ~~~~--~~~ffVLnsDvi~~~--p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkin 183 (371)
T KOG1322|consen 108 WVFE--DAPFFVLNSDVICRM--PYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKIN 183 (371)
T ss_pred hhcC--CCcEEEecCCeeecC--CHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhcccc
Confidence 3322 114667766642221 2467888887654 46778888876332 344 56666554322 2211 11
Q ss_pred -CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 145 -TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 145 -~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.-|.|+.+.|.+..... . .+..+..-....+.+++...-+..|.||.+|.||..+-.++-
T Consensus 184 aGiYi~~~~vL~ri~~~p--t--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl 244 (371)
T KOG1322|consen 184 AGIYILNPEVLDRILLRP--T--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYL 244 (371)
T ss_pred ceEEEECHHHHhHhhhcc--c--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHH
Confidence 24788888777654211 1 122222222234567777777789999999999998876654
No 85
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.10 E-value=1.1e-09 Score=85.11 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=75.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC------CcEEEecC--CccHHHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLP--GKERQDSVYSGL 74 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~sv~~al 74 (214)
.+.||+|++++|+|||+|+++.+.+.+ +++|+|+++++..+.++...+.+. ..+.+... ..+..++++.+.
T Consensus 19 ~~~pK~Llpv~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~ 97 (214)
T cd04198 19 DNIPKALLPVANKPMIWYPLDWLEKAG-FEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIR 97 (214)
T ss_pred cCCCcccCEECCeeHHHHHHHHHHHCC-CCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHH
Confidence 358999999999999999999999874 899999998754344666555431 11222221 223477788887
Q ss_pred hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028081 75 QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 113 (214)
Q Consensus 75 ~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i 113 (214)
..+. .+ ++++.|| ++....+..+++.+...++.+
T Consensus 98 ~~i~--~d-~lv~~~D--~i~~~~l~~~l~~h~~~~~~~ 131 (214)
T cd04198 98 KKIK--KD-FLVLSCD--LITDLPLIELVDLHRSHDASL 131 (214)
T ss_pred hhcC--CC-EEEEeCc--cccccCHHHHHHHHhccCCcE
Confidence 7663 23 6788899 788888999999887655433
No 86
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.09 E-value=2.3e-09 Score=86.49 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhccc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDF- 79 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~- 79 (214)
++||+|++++| +|||+|+++++...+.+++|+|+|++...+.+++.++..+..+.++ +.+.+...++..|...+..
T Consensus 21 ~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~ 100 (274)
T cd02509 21 SYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKR 100 (274)
T ss_pred CCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhc
Confidence 68999999999 9999999999998755899999999764344555554322223333 2233446778777776642
Q ss_pred -CCCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 80 -NSELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 80 -~~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
+.+.++++.+|.++.+.+.+.++++.
T Consensus 101 ~~~~~vlVl~~D~~i~~~~~f~~~l~~ 127 (274)
T cd02509 101 DPDAVLLVLPSDHLIEDVEAFLKAVKK 127 (274)
T ss_pred CCCCeEEEecchhcccCHHHHHHHHHH
Confidence 34689999999999887777766654
No 87
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.97 E-value=5.1e-08 Score=84.30 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCc-EEEec--CCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSL--PGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~sv~~al~~~~- 78 (214)
..||||+++.| +|||+|+++++...+ +++++|+++......+++.+..++.+ ..++. ...+...++..|...+.
T Consensus 21 ~~PK~~l~l~g~~~ll~~tl~~l~~~~-~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~ 99 (468)
T TIGR01479 21 LYPKQFLALVGDLTMLQQTLKRLAGLP-CSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAAR 99 (468)
T ss_pred CCCCceeEcCCCCcHHHHHHHHHhcCC-CcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHH
Confidence 47999999977 899999999998875 78999999866534456666666432 11221 11122344444433341
Q ss_pred --cCCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 79 --FNSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 79 --~~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
.+.+.++++.||.|+.+++.+.++++.+
T Consensus 100 ~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 100 RNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 1245789999999999888888888754
No 88
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.79 E-value=1.1e-07 Score=74.10 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--------CcEEEecCCc--cHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--------VDLKFSLPGK--ERQDSVYS 72 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~sv~~ 72 (214)
.++||+++|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+++.. ..+.++.+.. +..+++..
T Consensus 19 ~~~pK~llpi~g~piI~~~l~~l~~~G-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~ 96 (217)
T cd04197 19 KEKPRCLLPLANVPLIDYTLEFLALNG-VEEVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRD 96 (217)
T ss_pred cCCCceeeEECCEehHHHHHHHHHHCC-CCeEEEEeCCCH-HHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHH
Confidence 468999999999999999999999975 999999999754 55666665421 1233333211 11222322
Q ss_pred --HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 73 --GLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 73 --al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+...+ .+.++++.||. +....+..+++.+.+
T Consensus 97 ~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~ 129 (217)
T cd04197 97 LDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred Hhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHH
Confidence 11112 23477889996 445678889988765
No 89
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=98.72 E-value=5.8e-07 Score=66.93 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=87.9
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
-||.+++.++... +.+|.|+++++.. ...+. ..++..+. .-..++..++..+..+ +-++++++|-|+++
T Consensus 32 aML~dvi~Al~~~--~~~i~Vvtpde~~---~~~a~----~~~vl~d~-dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~ 100 (210)
T COG1920 32 AMLVDVLGALAGV--LGEITVVTPDEEV---LVPAT----KLEVLADP-DLNTAINAALDEIPLP-SEVIVVMADLPLLS 100 (210)
T ss_pred HHHHHHHHHhhhh--cCCceEEcCChHh---hhhcc----cceeeecc-chHHHHHHHHhhCCCC-cceEEEecccccCC
Confidence 4899999999864 6899999987642 11111 11233222 2345567777777644 56888999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH
Q 028081 96 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 175 (214)
Q Consensus 96 ~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~ 175 (214)
++.|+++++....++.+ +.|-. .+|. ...+-|.. .|+.+ | .+..+.+.....
T Consensus 101 ~~~i~~~~~~~~d~dvv--iaP~~-------gGGT-n~L~~r~~--------~~~~~-----y-----~g~SF~~Hl~~A 152 (210)
T COG1920 101 PEHIERALSAAKDADVV--IAPGR-------GGGT-NVLFARKS--------AFRPR-----Y-----GGVSFLRHLEEA 152 (210)
T ss_pred HHHHHHHHHhcCCCcEE--EecCC-------CCce-EEEEEecc--------ccccc-----c-----cCccHHHHHHHH
Confidence 99999999876543322 23322 1221 11111111 11100 0 011122223445
Q ss_pred HhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 176 EHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 176 ~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
++.|..+..+..-....|||||+||..+-
T Consensus 153 rk~G~~~~~~dSf~l~~DVDtpeDL~e~~ 181 (210)
T COG1920 153 RKRGLVVLTYDSFGLSADVDTPEDLVEAF 181 (210)
T ss_pred HHcCCEEEEecccceecCCCCHHHHHHHH
Confidence 56677776666656789999999998653
No 90
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.68 E-value=1.8e-07 Score=72.90 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=64.7
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc------CCcEE--EecC--CccHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI------NVDLK--FSLP--GKERQDSVYS 72 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~------~~~~~--~~~~--~~~~~~sv~~ 72 (214)
.+.||++++++|+|||.|+++.+.+++ +++|+|++++........+.+.+ +..+. .... ..+...+++.
T Consensus 19 ~~~pK~llpv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~ 97 (216)
T cd02507 19 SDIPKALLPVANVPLIDYTLEWLEKAG-VEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRD 97 (216)
T ss_pred cCCCcccceECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHH
Confidence 367999999999999999999999875 89999999987633223222222 11122 2211 2223666777
Q ss_pred HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 73 GLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 73 al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
+...+. .+ ++++.||. +..-.+..++++
T Consensus 98 ~~~~i~--~d-flv~~gD~--i~~~~l~~~l~~ 125 (216)
T cd02507 98 IRGLIR--SD-FLLLSCDL--VSNIPLSELLEE 125 (216)
T ss_pred HhhcCC--CC-EEEEeCCE--eecCCHHHHHHH
Confidence 776663 24 67888994 555567788854
No 91
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=98.67 E-value=7.5e-08 Score=74.44 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=64.4
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEEEcCCCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCIHDSARPL 93 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~ 93 (214)
-|+.+++.++.. ++ |+|++.++.. .+.+. .+|.. ++.. +.+--.++..|+... ..+.++++.+|-|+
T Consensus 32 aMl~Dvl~al~~---v~-v~vVs~d~~v---~~~a~~~~g~~--vl~d~~~gLN~Al~~a~~~~--~~~~vlvl~aDLPl 100 (217)
T PF01983_consen 32 AMLRDVLAALRA---VD-VVVVSRDPEV---AALARARLGAE--VLPDPGRGLNAALNAALAAA--GDDPVLVLPADLPL 100 (217)
T ss_dssp HHHHHHHHHHHH----S-EEEEES--S----TTTTT---SSE--EEE---S-HHHHHHHHHH-H----S-EEEE-S--TT
T ss_pred HHHHHHHHHHHh---cC-eEEeccchhh---hhhhhhccCCe--EecCCCCCHHHHHHHHHhcc--CCCceEEeecCCcc
Confidence 488999999976 57 8888876542 23222 34443 3332 234455566664332 35678999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHH
Q 028081 94 VLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVS 173 (214)
Q Consensus 94 v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~ 173 (214)
++++.|+.+++.....+ +.+.|-.+ +|.- ..... |..|+.. |. +..+.....
T Consensus 101 l~~~dl~~~l~~~~~~~--vviap~r~-------gGTN--------~L~~~-~~~~~~~-----fg-----~~S~~~H~~ 152 (217)
T PF01983_consen 101 LTPEDLDALLAAAGRAD--VVIAPDRG-------GGTN--------ALLLR-PDAFPFR-----FG-----GGSFARHLR 152 (217)
T ss_dssp --HHHHHHHCT-SS--S--EEEEE-GG-------G-EE--------EEEES-CCC----------S-----SSHHHHHHH
T ss_pred CCHHHHHHHHhccCCCC--EEEeCCCC-------CCeE--------EEEec-CCCCCCC-----cC-----hhHHHHHHH
Confidence 99999999997653322 33444332 2210 00011 3223211 00 000111122
Q ss_pred HHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 174 IVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 174 ~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
..++.|..+.++......+|||||+||..+
T Consensus 153 ~A~~~gl~~~v~~s~~l~~DVDtp~DL~el 182 (217)
T PF01983_consen 153 AARERGLSVAVVDSFRLALDVDTPEDLAEL 182 (217)
T ss_dssp HHHCTT--EEE---TTTT----SCCHHHHH
T ss_pred HHHHCCCeEEEEccCceeecCCCHHHHHHH
Confidence 344567777877777789999999999854
No 92
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=4.8e-06 Score=65.73 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=118.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHH----------------------Hhc--CCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK----------------------EKI--NVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~----------------------~~~--~~~~~~ 59 (214)
..||-++|+-+||+|+|+++.+.+++ +.+|++||+... ..+++.. +.. ..++.+
T Consensus 24 aiPKEMLPIvdKP~IqYiVeEa~~aG-Ie~i~iVTgr~K-~~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~ 101 (291)
T COG1210 24 AIPKEMLPIVDKPLIQYIVEEAVAAG-IEEILIVTGRGK-RAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISF 101 (291)
T ss_pred cCchhhccccCchhHHHHHHHHHHcC-CCEEEEEecCCc-chHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEE
Confidence 36999999999999999999999986 999999998753 1222211 111 123455
Q ss_pred ecCCc--cHHHHHHHHHhhcccCCCeEEEEcCCCCCCC-HHHHHHHHHHHHhcCC-eEEeeecc--ccEE--Eec-----
Q 028081 60 SLPGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGA-AVLGVPAK--ATIK--EAN----- 126 (214)
Q Consensus 60 ~~~~~--~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~-~~~i~~~i~~~~~~~~-~i~~~~~~--~~~~--~~~----- 126 (214)
+.+.. +-.+++.+|-.++. .+.+.++.+|.=+.+ ...+..|++.+..+++ ++.+.++. +..+ .++
T Consensus 102 vRQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~ 179 (291)
T COG1210 102 VRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPV 179 (291)
T ss_pred EecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCccc
Confidence 55422 34688888888876 345666667775554 6778999999988665 55555553 2111 111
Q ss_pred CCC--ceeeec-------CccchhhhcCCcccChHHHHHHHHHH--HhcC-CCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 127 SES--FVVRTL-------DRKTLWEMQTPQVIKPDLLKKGFELV--NREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 127 ~~g--~v~~~~-------~r~~~~~~~~p~~f~~~~l~~~~~~~--~~~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
..+ .+...+ .+|++.. ..-|.|.... ...++.. +..| ..+||....+.+. ..+.........+|+
T Consensus 180 ~~~~~~v~~~VEKP~~~~APSnlai-~GRYil~p~I-Fd~L~~~~~G~ggEiQLTDai~~L~~~-~~v~a~~~~GkryD~ 256 (291)
T COG1210 180 EKGVYKVKGMVEKPKPEEAPSNLAI-VGRYVLTPEI-FDILEETKPGAGGEIQLTDAIKKLLKK-EPVLAYVFEGKRYDC 256 (291)
T ss_pred cCCeEEEEEEEECCCCCCCCcceee-eeeeecCHHH-HHHHhhCCCCCCCEeeHHHHHHHHHhh-CcEEEEEecccEEcc
Confidence 112 122222 2344421 1224555443 3334442 2222 5689887655544 566655556678999
Q ss_pred CCHHHHHHHHHH
Q 028081 195 TTPDDLLIAERI 206 (214)
Q Consensus 195 dtp~Dl~~a~~~ 206 (214)
.++..|..|.--
T Consensus 257 G~k~Gyi~a~v~ 268 (291)
T COG1210 257 GSKLGYIKANVE 268 (291)
T ss_pred CCcccHHHHHHH
Confidence 999999876543
No 93
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1e-06 Score=65.81 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=62.3
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccH----HHHHHHHHhhccc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER----QDSVYSGLQEVDF 79 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~sv~~al~~~~~ 79 (214)
..||.|+.+.|+|||++.++.+++.+ +++|+||+|.-. +.+.-+..+|+ +.++.++.-+ ..|+..|...+.
T Consensus 20 ~tpK~LlkV~g~plIErqI~~L~e~g-I~dI~IVvGYlk-E~FeYLkdKy~--vtLvyN~kY~~yNn~ySlyla~d~l~- 94 (231)
T COG4750 20 STPKSLLKVNGEPLIERQIEQLREAG-IDDITIVVGYLK-EQFEYLKDKYD--VTLVYNPKYREYNNIYSLYLARDFLN- 94 (231)
T ss_pred cCChHHHHhcCcccHHHHHHHHHHCC-CceEEEEeeehH-HHHHHHHHhcC--eEEEeCchHHhhhhHHHHHHHHHHhc-
Confidence 57999999999999999999999986 999999999875 44555556775 5555544432 678889988886
Q ss_pred CCCeEEEEcCCCCC
Q 028081 80 NSELVCIHDSARPL 93 (214)
Q Consensus 80 ~~~~vl~~~~d~P~ 93 (214)
..+ ++++|.=|
T Consensus 95 -ntY--iidsDnyl 105 (231)
T COG4750 95 -NTY--IIDSDNYL 105 (231)
T ss_pred -ccE--EeccchHh
Confidence 233 56787643
No 94
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=8.4e-07 Score=72.77 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=67.4
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCCcE-----EEec-C--CccHHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDL-----KFSL-P--GKERQDSVYSG 73 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~~~-----~~~~-~--~~~~~~sv~~a 73 (214)
+..||.|+|++++|||.|.+..+.+++ +.+++|++..++.+.++.++.. +..+. .+-. + .-+..++++.-
T Consensus 28 ~~~pKaLLPIgn~PMi~YpL~~L~~~g-fteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~ip~~~~~d~gtadsLr~I 106 (433)
T KOG1462|consen 28 SRLPKALLPIGNKPMILYPLNSLEQAG-FTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEIPTDDNSDFGTADSLRYI 106 (433)
T ss_pred hhcchhhcccCCcceeeeehhHHHhcC-CeEEEEEecHHHHHHHHHHHhcCCcccccccEEEeecccccccCCHHHHhhh
Confidence 467999999999999999999999986 9999999998766666665532 22211 1111 1 11224555444
Q ss_pred HhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 74 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 74 l~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
-..+. .+-++++.|| |++--.+..+++.++.++
T Consensus 107 y~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~~d 139 (433)
T KOG1462|consen 107 YSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRATD 139 (433)
T ss_pred hhhhc--cCCEEEEecc--cccCCCcHHHHHHHhccC
Confidence 33343 3235677787 566666667777776554
No 95
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=2.1e-05 Score=63.55 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCceeeee-CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCc----EEEecCCccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD----LKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l-~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sv~~al~~~ 77 (214)
+..||||++| ++++|++.|++++......++++|+|+.+....+++.+...+.. +.+-+-|.....++..|...+
T Consensus 21 ~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~ 100 (333)
T COG0836 21 KDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSA 100 (333)
T ss_pred ccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHH
Confidence 3579999999 55999999999998855578999999987655555555542221 222233444455554443333
Q ss_pred -cc-CCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 78 -DF-NSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 78 -~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
.. ....++++.+|.=.-+.+.+.+.++..
T Consensus 101 ~~~~~d~~~lVlpsDH~I~d~~af~~av~~A 131 (333)
T COG0836 101 TAEGGDALVLVLPSDHVIADEEAFLNAVKKA 131 (333)
T ss_pred HHhCCCcEEEEecCcceeccHHHHHHHHHHH
Confidence 22 234789999999777877776666543
No 96
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9.4e-06 Score=64.72 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=69.3
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch---HHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
-+.||+|.+++|.|||.|-++++.+.+++.+|+++.-.++. +.+.+..+.+...+++..- .-+...++++--+.+
T Consensus 23 f~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqI 102 (407)
T KOG1460|consen 23 FNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQI 102 (407)
T ss_pred cCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHH
Confidence 36899999999999999999999999999999999877752 1233333445544444321 111133355544433
Q ss_pred -ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 78 -DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 78 -~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+.+.+.|+++.||--.-=| +..|+++++.+++
T Consensus 103 l~g~ps~vFvlnaDVCcsfP--l~~ml~ahr~~g~ 135 (407)
T KOG1460|consen 103 LAGSPSAVFVLNADVCCSFP--LQDMLEAHRRYGG 135 (407)
T ss_pred hcCCCceEEEEecceecCCc--HHHHHHHHhhcCC
Confidence 3345677777776543222 5788888877665
No 97
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.06 E-value=3.6e-05 Score=66.59 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC---CcEEEecCCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLPGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~sv~~al~~~~- 78 (214)
..||||+++.| +|||+++++++.... +.+.+|+|+....+.+++.+...+ .++.+-+.+.....++..|...+.
T Consensus 26 ~~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~~~~ 104 (478)
T PRK15460 26 LYPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKR 104 (478)
T ss_pred CCCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHHHHHH
Confidence 36999999955 799999999998764 566667788766555665555543 123222333344555544433332
Q ss_pred c--C-CCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 79 F--N-SELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 79 ~--~-~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
. + ...++++.+|.-.-+.+.+.+.++.
T Consensus 105 ~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~ 134 (478)
T PRK15460 105 HSPESDPLMLVLAADHVIADEDAFRAAVRN 134 (478)
T ss_pred hcCCCCCeEEEeccccccCCHHHHHHHHHH
Confidence 1 1 3578899999877777767666654
No 98
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.0078 Score=50.35 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=122.2
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCC-------cEEEec-----CCc----c
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINV-------DLKFSL-----PGK----E 65 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~-------~~~~~~-----~~~----~ 65 (214)
.++|+-.|++|| -||..++..+.+++ +.+|.|.|-..... +.+.+. +... .+.+.+ ++. +
T Consensus 25 ~RakpAVpFgGkYRiIDF~LSN~vNSG-i~~I~VltQy~~~S-L~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~G 102 (393)
T COG0448 25 DRAKPAVPFGGKYRIIDFALSNCVNSG-IRRIGVLTQYKSHS-LNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEG 102 (393)
T ss_pred CccccccccCceeEEEeEEcccccccC-CCeEEEEeccchhH-HHHHhhCCCccccccccCcEEEeCchhccCCCcceec
Confidence 478999999997 68999999999986 99999999877532 233322 1111 122222 111 1
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc------EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT------IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~------~~~~~~~g~v~~~~~ 136 (214)
..++++.-+..+.+ +.++|+++.||. +-.=+++.+++.+.+.++ .+.+.++... +..++++|++....+
T Consensus 103 tadai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~e 180 (393)
T COG0448 103 TADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVE 180 (393)
T ss_pred cHHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeee
Confidence 35667766655542 468999999997 334567889998877655 4445555432 334566677654422
Q ss_pred ------ccchhhhcCCcccChHHHHHHHHHHHh--cCC-CCCcH-HHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHH
Q 028081 137 ------RKTLWEMQTPQVIKPDLLKKGFELVNR--EGL-EVTDD-VSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 137 ------r~~~~~~~~p~~f~~~~l~~~~~~~~~--~~~-~~~d~-~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
+++-..--.-++|+.+.|.+++....+ ++. .+..+ .-.+...|. +...+.+..|-||.|-+-|-.|+--
T Consensus 181 Kp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aNmd 259 (393)
T COG0448 181 KPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMD 259 (393)
T ss_pred ccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhhHH
Confidence 111001113478999999998876443 222 12222 222334444 7767777789999999988877643
No 99
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.67 E-value=0.061 Score=41.98 Aligned_cols=91 Identities=13% Similarity=-0.038 Sum_probs=61.8
Q ss_pred eCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
.++...|..+++.+... .++|+|+-+... +...++++.++.++... ...+...+.-.|+..+. .++++++|+|.
T Consensus 9 ~Ne~~~l~~~l~sl~~~--~~eiivvD~gSt-D~t~~i~~~~~~~v~~~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~ 82 (229)
T cd02511 9 KNEERNIERCLESVKWA--VDEIIVVDSGST-DRTVEIAKEYGAKVYQR-WWDGFGAQRNFALELAT--NDWVLSLDADE 82 (229)
T ss_pred CCcHHHHHHHHHHHhcc--cCEEEEEeCCCC-ccHHHHHHHcCCEEEEC-CCCChHHHHHHHHHhCC--CCEEEEEeCCc
Confidence 45667788999988753 378888765443 44566677776554333 22233444455776654 68999999998
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
.++++.+..+.+.+...
T Consensus 83 -~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 83 -RLTPELADEILALLATD 99 (229)
T ss_pred -CcCHHHHHHHHHHHhCC
Confidence 67999999998877654
No 100
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.018 Score=50.67 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC------CcEEEecCCccHHHHHHHHHhh
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLPGKERQDSVYSGLQE 76 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~sv~~al~~ 76 (214)
..+|+.|+||.+.|||.|+++.+..++ +.+|+|.+.... ..+.+.+++.. ..+..+.+|. ..|+-.+++.
T Consensus 43 ~~~p~~LLPlaNVpmIdYtL~~L~~ag-V~eVfvfc~~~~-~qi~e~i~~sew~~~~~~~v~ti~s~~--~~S~GDamR~ 118 (673)
T KOG1461|consen 43 LEKPRVLLPLANVPMIDYTLEWLERAG-VEEVFVFCSAHA-AQIIEYIEKSEWYLPMSFIVVTICSGE--SRSVGDAMRD 118 (673)
T ss_pred cCCCceEeeecCchHHHHHHHHHHhcC-ceEEEEEecccH-HHHHHHHhhccccccccceEEEEcCCC--cCcHHHHHHH
Confidence 357999999999999999999998875 999999987443 33555555421 1233334443 3345566666
Q ss_pred ccc----CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 77 VDF----NSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 77 ~~~----~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+.. ..|++|+ .||. ++--.+.++++.++
T Consensus 119 id~k~litgDFiLV-sgd~--vsN~pl~~~l~eHr 150 (673)
T KOG1461|consen 119 IDEKQLITGDFILV-SGDT--VSNMPLRNVLEEHR 150 (673)
T ss_pred HHhcceeecceEEE-eCCe--eecCchHHHHHHHH
Confidence 532 2466554 4543 34456778888774
No 101
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=96.58 E-value=0.029 Score=39.56 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHH
Q 028081 21 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV 99 (214)
Q Consensus 21 ~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i 99 (214)
|++++.+....+.++..+++............. .+.+.. ++.+-..-+.+|++.+...++.|+++-+|.|.++++.|
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l 78 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPS--GFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL 78 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-T--TSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCC--CCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence 456666665444444444444333332211222 233333 33444455666666553346789999999999999999
Q ss_pred HHHHHHHHhcCCeEEeeeccc
Q 028081 100 QKVLMDALRVGAAVLGVPAKA 120 (214)
Q Consensus 100 ~~~i~~~~~~~~~i~~~~~~~ 120 (214)
+.+++.++..+.+ ..|..|
T Consensus 79 ~~A~~~L~~~d~V--lgPa~D 97 (122)
T PF09837_consen 79 EQAFEALQRHDVV--LGPAED 97 (122)
T ss_dssp HHHHHHTTT-SEE--EEEBTT
T ss_pred HHHHHHhccCCEE--EeeccC
Confidence 9999988765433 345544
No 102
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=96.39 E-value=0.15 Score=38.03 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=60.6
Q ss_pred CCeehHHHHHHHHhcCCC---cCeEEEEeCCCchHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcc---cCCCeE
Q 028081 13 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD---FNSELV 84 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~---~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~---~~~~~v 84 (214)
+....|..+++++.+... .-+|+|+.+... +...++++.++..+.... ...+...++..|+..+. ...|++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v 85 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAV 85 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEE
Confidence 445677888888865431 135777655543 455666666665443322 22234566666776552 247899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|. .++|+.+.+++..+..
T Consensus 86 ~~~DaD~-~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 86 VVFDADN-LVDPNALEELNARFAA 108 (183)
T ss_pred EEEcCCC-CCChhHHHHHHHHHhh
Confidence 9999999 5579999999988764
No 103
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=96.11 E-value=0.11 Score=40.74 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred eeee-CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHHhcCC-cEEEec--CCccHHHHHHHHHhhcccCC
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~sv~~al~~~~~~~ 81 (214)
+.+. +....|..+++.+.+...- -+|+|+.+... +...++++.+.. .+.++. ...+...+...|++... .
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~gi~~a~--~ 110 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPERRGKAAALNRALALAT--G 110 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHHHHHcC--C
Confidence 3443 4455778888887653322 26777765443 334455554432 233332 22334566667777765 5
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|+++++|+|.-+ +++.+.++++.+...+
T Consensus 111 d~i~~lD~D~~~-~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 111 EIVVFTDANALL-DPDALRLLVRHFADPS 138 (251)
T ss_pred CEEEEEccccCc-CHHHHHHHHHHhcCCC
Confidence 999999999955 6999999999885433
No 104
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=96.01 E-value=0.016 Score=46.65 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcC-------CCcCeEEEEeCCCchHHHHHHHHhcC-C--cEE---------
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRM-------VEVKEIVVVCDPSYSDIFEETKEKIN-V--DLK--------- 58 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~-------~~~~~iiVv~~~~~~~~~~~~~~~~~-~--~~~--------- 58 (214)
||...||++++++ |||+++|.++++++. ..+..+++.+++. -+.+.+.++++. . .+.
T Consensus 14 Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t-~~~t~~~l~~~~~~~~~v~~f~Q~~~P~ 92 (266)
T cd04180 14 LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYT-HEKTQCYFEKINQKNSYVITFMQGKLPL 92 (266)
T ss_pred cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchh-HHHHHHHHHHcCCCCCceEEEEeCCceE
Confidence 5777899999999 999999999999763 1244455544433 355666666543 1 111
Q ss_pred ----------------EecCCccHHHHHHHHHh------hc-ccCCCeEEEEcCCCCCCCHHH
Q 028081 59 ----------------FSLPGKERQDSVYSGLQ------EV-DFNSELVCIHDSARPLVLSKD 98 (214)
Q Consensus 59 ----------------~~~~~~~~~~sv~~al~------~~-~~~~~~vl~~~~d~P~v~~~~ 98 (214)
+.+.| .+.++.+|. .+ +....++.+.+.|.++....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~P~G---nGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~D 152 (266)
T cd04180 93 KNDDDARDPHNKTKCHLFPCG---HGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVAD 152 (266)
T ss_pred EeCCCCcccCCCCceeeccCC---cHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccC
Confidence 11112 233444443 22 224689999999999987633
No 105
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.01 E-value=0.2 Score=38.69 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=61.2
Q ss_pred eeeeCCe--ehHHHHHHHHhcCCCcC---eEEEEeCCCchHHHHHHHHhcCC----cEEEec-CCccHHHHHHHHHhhcc
Q 028081 9 YLPLLGQ--PIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV----DLKFSL-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 9 l~~l~gk--pli~~~i~~~~~~~~~~---~iiVv~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~sv~~al~~~~ 78 (214)
+.+.-+. .+|..+++.+.....-+ +|+||-+... +...+++..+.. .+.... +.......+-.|++...
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR-PELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc-hhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhCC
Confidence 3444443 37888999998754334 6777765543 455566665543 222222 11122444566777654
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.++++++|+|. .++++.+.++++.+..
T Consensus 85 --~d~i~~lD~D~-~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 --GDFVAILDADH-VPTPDFLRRTLGYFLD 111 (234)
T ss_pred --CCEEEEEcccc-CcCccHHHHHHHHHhc
Confidence 79999999998 6689999999998865
No 106
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.94 E-value=0.24 Score=34.70 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcC-----CcEEEecCCccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKIN-----VDLKFSLPGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+..+++.++++++.... ...+++|+.+... +...+...... ..........+...+...++.... .+++++
T Consensus 7 ~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~~ 83 (156)
T cd00761 7 NEEPYLERCLESLLAQTYPNFEVIVVDDGST-DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR--GEYILF 83 (156)
T ss_pred CcHHHHHHHHHHHHhCCccceEEEEEeCCCC-ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc--CCEEEE
Confidence 45699999999998764 2467888777654 22333333221 111222233344566667777664 789999
Q ss_pred EcCCCCCCCHHHHHHHHHHH
Q 028081 87 HDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~ 106 (214)
+|+|..+ .++.+..++..+
T Consensus 84 ~d~D~~~-~~~~~~~~~~~~ 102 (156)
T cd00761 84 LDADDLL-LPDWLERLVAEL 102 (156)
T ss_pred ECCCCcc-CccHHHHHHHHH
Confidence 9999986 566677764443
No 107
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.93 E-value=0.38 Score=36.20 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcC--CcEEEe--cCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 17 IALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKIN--VDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 17 li~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
.|..+++.+.+... -.+|+|+-+....+...+++..+. .++.++ ....+...+.-.|+.... .++++++|+|.
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~Dd 91 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDTDD 91 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCCcc
Confidence 78899999876432 256766655432233333333221 123333 222344555666776654 78999999998
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
...++.++.+++.+...
T Consensus 92 -~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 92 -ISLPDRFEKQLDFIEKN 108 (201)
T ss_pred -ccCcHHHHHHHHHHHhC
Confidence 77899999999988654
No 108
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.87 E-value=0.15 Score=39.43 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=59.0
Q ss_pred eCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHH---HhcCCcEEEe-cCCccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK---EKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+.. +.|..+++.+.+.. -.+|+||.+... +...+.+ .... .+.+. ....+...++-.|+.... .|++++
T Consensus 9 ~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~-d~~~~~l~~~~~~~-~~~v~~~~~~g~~~a~n~g~~~a~--~d~v~~ 83 (235)
T cd06434 9 YDEDPDVFRECLRSILRQK-PLEIIVVTDGDD-EPYLSILSQTVKYG-GIFVITVPHPGKRRALAEGIRHVT--TDIVVL 83 (235)
T ss_pred cCCChHHHHHHHHHHHhCC-CCEEEEEeCCCC-hHHHHHHHhhccCC-cEEEEecCCCChHHHHHHHHHHhC--CCEEEE
Confidence 3555 78999999998754 357777766554 3333332 1221 22222 222334566667777664 799999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHh
Q 028081 87 HDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|+|. .++++.++++++.+..
T Consensus 84 lD~D~-~~~~~~l~~l~~~~~~ 104 (235)
T cd06434 84 LDSDT-VWPPNALPEMLKPFED 104 (235)
T ss_pred ECCCc-eeChhHHHHHHHhccC
Confidence 99999 6788899999988863
No 109
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.73 E-value=0.063 Score=38.65 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=59.9
Q ss_pred CCeehHHHHHHHHhcC-CCcCeEEEEeCCCchHHHHHHHHhc---CCcEEEecC--CccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~-~~~~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
++...|..+++.+++. ....+|+|+-+... +...++++.+ ...+.++.. ..+...+...|++... .+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~~ 84 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTDPDFEIIVVDDGST-DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK--GEYILF 84 (169)
T ss_dssp S-TTTHHHHHHHHHHHSGCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEEeccccc-cccccccccccccccccccccccccccccccccccccccc--eeEEEE
Confidence 4447788899988765 23467888766552 2233444443 345555432 2245666777888775 579999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 87 HDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+|+|. .++++.+..+++.+.+.+.
T Consensus 85 ld~D~-~~~~~~l~~l~~~~~~~~~ 108 (169)
T PF00535_consen 85 LDDDD-IISPDWLEELVEALEKNPP 108 (169)
T ss_dssp EETTE-EE-TTHHHHHHHHHHHCTT
T ss_pred eCCCc-eEcHHHHHHHHHHHHhCCC
Confidence 99998 6667799999998887544
No 110
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.47 E-value=0.45 Score=36.85 Aligned_cols=93 Identities=9% Similarity=0.088 Sum_probs=59.1
Q ss_pred hHHHHHHHHhcCCC-cCeEEEEeCCCch----HHHHHHHHhcCCcEEEecCC--cc-HHHHHHHHHhhcccCCCeEEEEc
Q 028081 17 IALYSFYTFSRMVE-VKEIVVVCDPSYS----DIFEETKEKINVDLKFSLPG--KE-RQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 17 li~~~i~~~~~~~~-~~~iiVv~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~-~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
+|..+++.+..... --+|+||-+...- ..++++++.++.++.++... .+ ...++-.|++.+...+|+++++|
T Consensus 13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD 92 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVID 92 (236)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEc
Confidence 78899999876532 2467776654321 12345555555444443221 12 24556667776643468999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 028081 89 SARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+|. .++++.|.+++..+...+
T Consensus 93 ~D~-~~~~~~l~~l~~~~~~~~ 113 (236)
T cd06435 93 ADY-QVEPDWLKRLVPIFDDPR 113 (236)
T ss_pred CCC-CcCHHHHHHHHHHhcCCC
Confidence 997 889999999998875433
No 111
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.30 E-value=0.45 Score=36.41 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=55.4
Q ss_pred CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHH---h-cCCcEEEecC----CccHHHHHHHHHhhcccCC
Q 028081 13 LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKE---K-INVDLKFSLP----GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~---~-~~~~~~~~~~----~~~~~~sv~~al~~~~~~~ 81 (214)
+....|..+++.+.....- -+|+|+-+... +...+.++ . .+..+..+.. ..+...++-.|+.... .
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~ 83 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHST-DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--G 83 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC-cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc--C
Confidence 4556788889888654322 25666644322 22222222 1 1223433322 2233445556666554 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|+++++|+|. .+.++.++++++.+...+
T Consensus 84 d~i~~~D~D~-~~~~~~l~~l~~~~~~~~ 111 (229)
T cd04192 84 DWIVTTDADC-VVPSNWLLTFVAFIQKEQ 111 (229)
T ss_pred CEEEEECCCc-ccCHHHHHHHHHHhhcCC
Confidence 8999999999 778999999998776543
No 112
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=95.22 E-value=0.4 Score=39.38 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCeehHHHHHHHHhcC---CCcCeEEEEeCCCchHHHHHHHHhcCCcEE----E---ecCCccHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRM---VEVKEIVVVCDPSYSDIFEETKEKINVDLK----F---SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~---~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
+....|..+++.+.+. +...+|+|+-+... +...+.++.++..+. . .....+...++..|+.... .|
T Consensus 41 Nee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt-D~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~--gd 117 (306)
T PRK13915 41 NEEETVGKVVDSIRPLLMEPLVDELIVIDSGST-DATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATT--GD 117 (306)
T ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc-cHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcC--CC
Confidence 6667788888888652 22467777654433 445556666553321 0 1111233556667776654 69
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+++++|+|.-..+++.+.++++.+.
T Consensus 118 ~vv~lDaD~~~~~p~~l~~l~~~l~ 142 (306)
T PRK13915 118 IVVFVDADLINFDPMFVPGLLGPLL 142 (306)
T ss_pred EEEEEeCccccCCHHHHHHHHHHHH
Confidence 9999999996678999999998775
No 113
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.04 E-value=0.31 Score=36.03 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=54.1
Q ss_pred ehHHHHHHHHhcCC---CcCeEEEEeCCCchHHHHHHHHhcCC---cEEEe--cCCccHHHHHHHHHhhcccCCCeEEEE
Q 028081 16 PIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKINV---DLKFS--LPGKERQDSVYSGLQEVDFNSELVCIH 87 (214)
Q Consensus 16 pli~~~i~~~~~~~---~~~~iiVv~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl~~ 87 (214)
..|..+++.+.+.. ...+|+|+-+... +...+.++.+.. .+.++ ....+...+.-.|+.... .|+++++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~l 86 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVTM 86 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--CCEEEEE
Confidence 45667777776552 2467777755432 223333333221 22222 222233555666776655 5899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 88 DSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 88 ~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
|+|.- ++++.++++++.+...+.
T Consensus 87 D~D~~-~~~~~l~~l~~~~~~~~~ 109 (185)
T cd04179 87 DADLQ-HPPEDIPKLLEKLLEGGA 109 (185)
T ss_pred eCCCC-CCHHHHHHHHHHHhccCC
Confidence 99985 489999999987544433
No 114
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.95 E-value=0.9 Score=35.50 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=57.4
Q ss_pred CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHHhcCC----cEEEecC--CccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINV----DLKFSLP--GKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~sv~~al~~~~~~~~~ 83 (214)
+..-.|..+++.+.+...- =+|+||.+... +...++++.+.. .+..... ..+...++-.|++... .|+
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~ 87 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEY 87 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCE
Confidence 3445677888888764311 14666554433 334444444431 2333332 2234566777887654 699
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++++|+|. .+.++.+.++++.+.+
T Consensus 88 i~~~DaD~-~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 88 VVIYDAED-APDPDQLKKAVAAFAR 111 (241)
T ss_pred EEEEcCCC-CCChHHHHHHHHHHHh
Confidence 99999999 6889999999998764
No 115
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.73 E-value=0.64 Score=33.40 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=59.8
Q ss_pred eCCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccCCCeEEEEc
Q 028081 12 LLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
.+...++..+++.+.+.. ...+|+|+-+... +...+.+......+.++.. ..+...+...|++.+. .++++++|
T Consensus 6 ~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D 82 (166)
T cd04186 6 YNSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLN 82 (166)
T ss_pred cCCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCC--CCEEEEEC
Confidence 455678899999987653 1356777766443 3334444443323433322 2234555666777664 78999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 028081 89 SARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|.= .+++.+..+++.+...
T Consensus 83 ~D~~-~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 83 PDTV-VEPGALLELLDAAEQD 102 (166)
T ss_pred CCcE-ECccHHHHHHHHHHhC
Confidence 9984 5788899999876554
No 116
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.63 E-value=1.2 Score=33.45 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=55.9
Q ss_pred eCCe-ehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc---CCcEEEec--CCccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQ-PIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gk-pli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.++. ..|..+++.+.+...- -+|+|+-+...-..+..+.+.+ ...+.+.. ...+...+.-.|++... .+++
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i 87 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT--GEFV 87 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc--CCEE
Confidence 4556 7788889888764321 2666664433211223332221 12333332 22233455666777654 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+++|+|. .++++.++.+++.+.
T Consensus 88 ~~ld~D~-~~~~~~l~~~~~~~~ 109 (202)
T cd04184 88 ALLDHDD-ELAPHALYEVVKALN 109 (202)
T ss_pred EEECCCC-cCChHHHHHHHHHHH
Confidence 9999999 668999999999874
No 117
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.60 E-value=0.9 Score=32.51 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcCC----cEEEe--cCCccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINV----DLKFS--LPGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+....|..+++.+.+... -.+|+|+-+... +...+.+..+.. .+.+. ....+...+.-.|++... .++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~ 83 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVV 83 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEE
Confidence 444678888888876431 246777655443 223333333321 12221 222233555666777664 78999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
++|+|. .+.++.+..++..+...
T Consensus 84 ~~D~D~-~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 84 VLDADT-ILEPDALKRLVVPFFAD 106 (180)
T ss_pred EECCCC-CcChHHHHHHHHHhccC
Confidence 999999 66899999996655443
No 118
>PRK10073 putative glycosyl transferase; Provisional
Probab=94.44 E-value=1.6 Score=36.21 Aligned_cols=95 Identities=15% Similarity=0.054 Sum_probs=58.0
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc---CCcEEEecCC-ccHHHHHHHHHhhcccCCCeEEEE
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSLPG-KERQDSVYSGLQEVDFNSELVCIH 87 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~sv~~al~~~~~~~~~vl~~ 87 (214)
+....|..+++.+.+...- -+|+||-+... +...+++..+ ...+.+.... .+...+.-.|++... .++++++
T Consensus 16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt-D~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a~--g~yi~fl 92 (328)
T PRK10073 16 NAGKDFRAFMESLIAQTWTALEIIIVNDGST-DNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVAT--GKYVAFP 92 (328)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhCC--CCEEEEE
Confidence 6678999999999764321 36676644332 2222333322 1234444322 233444455777665 6899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 88 DSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 88 ~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
|+|- ++.++.+..+++.+...+.
T Consensus 93 D~DD-~~~p~~l~~l~~~~~~~~~ 115 (328)
T PRK10073 93 DADD-VVYPTMYETLMTMALEDDL 115 (328)
T ss_pred CCCC-ccChhHHHHHHHHHHhCCC
Confidence 9998 5689999999987765443
No 119
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.41 E-value=1.4 Score=37.57 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=59.2
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+....|..+++++.+...- -+|+|+.+... .+.+++...++. ++.++. ...+...++-.|++... .|++++
T Consensus 64 ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~--~d~i~~ 140 (420)
T PRK11204 64 NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAAR--SEYLVC 140 (420)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 5667889999988764322 36777655432 122223333332 344433 22334666777777654 799999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|. .++++.+.++++.+++.
T Consensus 141 lDaD~-~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 141 IDGDA-LLDPDAAAYMVEHFLHN 162 (420)
T ss_pred ECCCC-CCChhHHHHHHHHHHhC
Confidence 99999 66999999999988543
No 120
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=94.31 E-value=1.6 Score=41.03 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=63.3
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCc-C--eEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCC
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~-~--~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~ 82 (214)
+.+.-+.+ ++..++.++.+...- + +|+|+-|... +...++++++++.+....+ .....+.+-+|++... .|
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~-D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a~--GE 341 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGR-EEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYAK--GE 341 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCC-hHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhCC--CC
Confidence 55556666 577888887654321 2 5676654443 6677888877654322222 1123555667887764 79
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+++++|+|. ..+++.+++++..+.+.
T Consensus 342 yIavlDAD~-ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 342 FVAIFDCDH-VPTRSFLQMTMGWFLKD 367 (852)
T ss_pred EEEEECCCC-CCChHHHHHHHHHHHhC
Confidence 999999999 56899999998876443
No 121
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=94.29 E-value=1 Score=34.40 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred eCCeehHHHHHHHHhcCC--CcCeEEEEeCCCc---hHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQPIALYSFYTFSRMV--EVKEIVVVCDPSY---SDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~--~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.++...|..+++.+.+.. .-.+|+||-+... .+.+++...... .+.+. ....+...+.-.|++... .|++
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--gd~i 82 (224)
T cd06442 6 YNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--GDVI 82 (224)
T ss_pred cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--CCEE
Confidence 345566888888887543 1246777654332 112222222222 22332 222233555667887765 5899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|.- .+++.+..+++.+..
T Consensus 83 ~~lD~D~~-~~~~~l~~l~~~~~~ 105 (224)
T cd06442 83 VVMDADLS-HPPEYIPELLEAQLE 105 (224)
T ss_pred EEEECCCC-CCHHHHHHHHHHHhc
Confidence 99999985 589999999987543
No 122
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.27 E-value=0.87 Score=38.58 Aligned_cols=96 Identities=10% Similarity=0.029 Sum_probs=59.7
Q ss_pred CCeehHHHHHHHHhcCCC--cCeEEEEeCCCchHHHHHHHH----hcC--CcEEEecCC------ccHHHHHHHHHhhcc
Q 028081 13 LGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKE----KIN--VDLKFSLPG------KERQDSVYSGLQEVD 78 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~--~~~iiVv~~~~~~~~~~~~~~----~~~--~~~~~~~~~------~~~~~sv~~al~~~~ 78 (214)
+..+.|..+++.+.+... --+|+||-+... |...++++ .+. ..+.++.+. .+...+...|++...
T Consensus 50 Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~ 128 (384)
T TIGR03469 50 NEADVIGECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAAR 128 (384)
T ss_pred CcHhHHHHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHh
Confidence 678889999999976432 136777765433 32333333 232 134444321 233445666666543
Q ss_pred c---CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 79 F---NSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 79 ~---~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+ +.|+++++|+|. .++++.+.++++.+.+.+
T Consensus 129 ~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~ 162 (384)
T TIGR03469 129 TLAPPADYLLLTDADI-AHGPDNLARLVARARAEG 162 (384)
T ss_pred ccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC
Confidence 1 268999999999 568999999998876544
No 123
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=94.15 E-value=1.3 Score=33.36 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred eCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hc-CCcEEEec-----CCccHHHHHHHHHhhccc-----
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFSL-----PGKERQDSVYSGLQEVDF----- 79 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~-~~~~~~~~-----~~~~~~~sv~~al~~~~~----- 79 (214)
.+....|..+++++.+...-.+|+|+-+... +...++++ .. ...+.++. ...+...++-.|++.+..
T Consensus 6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~ 84 (191)
T cd06436 6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEE 84 (191)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccc
Confidence 4566788899999876432246777655443 33344444 11 22344332 122445666667765421
Q ss_pred ----CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 80 ----NSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 80 ----~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
..++++++|+|.- ++++.++++...+.
T Consensus 85 g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~ 115 (191)
T cd06436 85 GADPERVIIAVIDADGR-LDPNALEAVAPYFS 115 (191)
T ss_pred ccCCCccEEEEECCCCC-cCHhHHHHHHHhhc
Confidence 2379999999994 78889988776554
No 124
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=94.05 E-value=2 Score=35.63 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=55.7
Q ss_pred CCeehHHHHHHHHh----cCCCcCeEEEEeCCCc---hHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFS----RMVEVKEIVVVCDPSY---SDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~----~~~~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+...-|..+++++. +.+.--+|+||-+... .+.+++..+..+..+.. .....+...++..|+++.. .|+
T Consensus 16 NE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd~ 93 (325)
T PRK10714 16 NEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GDL 93 (325)
T ss_pred CchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CCE
Confidence 44555666665543 2221236766654322 12223333333434432 2333455677888888765 789
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++++|+|.- .+|+.+.++++.+.+
T Consensus 94 vv~~DaD~q-~~p~~i~~l~~~~~~ 117 (325)
T PRK10714 94 IITLDADLQ-NPPEEIPRLVAKADE 117 (325)
T ss_pred EEEECCCCC-CCHHHHHHHHHHHHh
Confidence 999999996 599999999998754
No 125
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=94.03 E-value=1.9 Score=37.21 Aligned_cols=94 Identities=6% Similarity=0.080 Sum_probs=57.9
Q ss_pred eCCeehHHHHHHHHhcCCCc-C--eEEEEeCCCchHHHHHH----HHhcC-CcEEEecCCccHHHHHHHHHhhcccCCCe
Q 028081 12 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEET----KEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~--~iiVv~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+....|..+++++.+...- + +|+|+-+... +...+. ...+. ..+.......+...++-.|++... .++
T Consensus 58 yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St-D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~--g~~ 134 (439)
T TIGR03111 58 YNSEDTLFNCIESIYNQTYPIELIDIILANNQST-DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI--GKY 134 (439)
T ss_pred CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC-hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc--CCE
Confidence 36778889999998754321 2 4666544332 322222 22222 122223333334556667777654 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
++++|+|. .++++.++++++.+.+.
T Consensus 135 v~~~DaD~-~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 135 IIHIDSDG-KLHKDAIKNMVTRFENN 159 (439)
T ss_pred EEEECCCC-CcChHHHHHHHHHHHhC
Confidence 99999999 45999999999988643
No 126
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.99 E-value=0.76 Score=39.25 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCee-hHHHHHHHHhcCCCcC-eEEEEeCCCchHHHHHHHHhcC----CcEEEe---cCCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQP-IALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKIN----VDLKFS---LPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkp-li~~~i~~~~~~~~~~-~iiVv~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+..+ .++.+++++.+...-+ +|+|+.+... +...+.+.+++ ..+.+. ....+...++..|+.... .|+
T Consensus 64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~--~d~ 140 (439)
T COG1215 64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAK--GDV 140 (439)
T ss_pred CCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcC--CCE
Confidence 5566 7999999998765322 7888776443 44444444432 233333 222233566777887665 799
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|++.|+|. ...++.+.+++..+...+
T Consensus 141 V~~~DaD~-~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 141 VVILDADT-VPEPDALRELVSPFEDPP 166 (439)
T ss_pred EEEEcCCC-CCChhHHHHHHhhhcCCC
Confidence 99999999 568999999998886543
No 127
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.97 E-value=1.1 Score=34.63 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCeehHHHHHHHHhcCCC---cCeEEEEeCCCchHHHHHHHHhcC---CcEEEecC-CccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLP-GKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~---~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+..+.|..+++.+.+... --+|+|+-+... +...+.++.+. ..+.++.. +.+...+.-.|++... .|+++
T Consensus 10 n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a~--~d~v~ 86 (249)
T cd02525 10 NEEKYIEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSR--GDIII 86 (249)
T ss_pred CchhhHHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHhC--CCEEE
Confidence 445677888888865432 236777654432 22333333332 12444332 2223445566776654 79999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++|+|. .++++.++++++.+...+.
T Consensus 87 ~lD~D~-~~~~~~l~~~~~~~~~~~~ 111 (249)
T cd02525 87 RVDAHA-VYPKDYILELVEALKRTGA 111 (249)
T ss_pred EECCCc-cCCHHHHHHHHHHHhcCCC
Confidence 999999 7799999999987655443
No 128
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=93.69 E-value=2.1 Score=31.59 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.5
Q ss_pred CeehHHHHHHHHhcC----CCcCeEEEEeCCCchHHHHHHHHhcC---CcEEEe--cCCccHHHHHHHHHhhcccCCCeE
Q 028081 14 GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 14 gkpli~~~i~~~~~~----~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
+.-.|..+++.+... ..-.+|+|+-+... +...+.++.+. .++.++ ....+...+...|+.... .+++
T Consensus 8 ~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i 84 (181)
T cd04187 8 EEENLPELYERLKAVLESLGYDYEIIFVDDGST-DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR--GDAV 84 (181)
T ss_pred chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC--CCEE
Confidence 333455555554321 11246777755433 22222333221 123332 222234566677887765 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|..+ +++.++++++....
T Consensus 85 ~~~D~D~~~-~~~~l~~l~~~~~~ 107 (181)
T cd04187 85 ITMDADLQD-PPELIPEMLAKWEE 107 (181)
T ss_pred EEEeCCCCC-CHHHHHHHHHHHhC
Confidence 999999975 88999999987543
No 129
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.61 E-value=2 Score=32.68 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=56.2
Q ss_pred CCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 13 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
+..+.|..+++.+.+.. ...+|+|+-+... +...+.++.. .+.+.....+...+.-.|+.... .++++++|+|.
T Consensus 9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~-d~~~~~~~~~--~~~~~~~~~g~~~a~n~g~~~a~--~~~i~~~D~D~ 83 (221)
T cd02522 9 NEAENLPRLLASLRRLNPLPLEIIVVDGGST-DGTVAIARSA--GVVVISSPKGRARQMNAGAAAAR--GDWLLFLHADT 83 (221)
T ss_pred CcHHHHHHHHHHHHhccCCCcEEEEEeCCCC-ccHHHHHhcC--CeEEEeCCcCHHHHHHHHHHhcc--CCEEEEEcCCC
Confidence 44457888888887643 1246777654332 3334444443 34444433334444445666654 68999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028081 92 PLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++.+++++......+.
T Consensus 84 -~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 84 -RLPPDWDAAIIETLRADGA 102 (221)
T ss_pred -CCChhHHHHHHHHhhcCCc
Confidence 6689999998766544433
No 130
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.54 E-value=1.8 Score=32.03 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=54.4
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhcCCc-EEEe-cCCccHHHHHHHHHhhcccCCCeEEEEc
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINVD-LKFS-LPGKERQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
.++...|..+++.+.+...- -+|+||-+... +...+.++.+... ..+. ....+...+.-.|++... .+++++++
T Consensus 7 ~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld 83 (202)
T cd06433 7 YNQAETLEETIDSVLSQTYPNIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALAT--GDIIGFLN 83 (202)
T ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeC
Confidence 35556788889888654311 25666643322 3334444444322 2222 222344566667887765 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 028081 89 SARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|. .+.++.+..++..+..
T Consensus 84 ~D~-~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 84 SDD-TLLPGALLAVVAAFAE 102 (202)
T ss_pred CCc-ccCchHHHHHHHHHHh
Confidence 999 4556777777754433
No 131
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.51 E-value=2.2 Score=32.11 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=56.5
Q ss_pred eCCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcCCc--EEEecC--CccHHHHHHHHHhhc-ccCCCeEE
Q 028081 12 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEV-DFNSELVC 85 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~sv~~al~~~-~~~~~~vl 85 (214)
.++...|..+++.+.+... -.+|+|+-+... +...+.++.+... +.+... ..+...++-.|++.. ....|+++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEE
Confidence 4666788999999976432 246777654332 3344555554422 233221 122233344444433 22478999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHH
Q 028081 86 IHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++|+|. .++++.++.+++.+.
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHh
Confidence 999999 778999999998876
No 132
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=93.50 E-value=2.8 Score=33.86 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHH
Q 028081 73 GLQEVDFNSELVCIHDSARPLVLSKDVQKVLM 104 (214)
Q Consensus 73 al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~ 104 (214)
|++... .++++++|+|+ +++++.+.+++.
T Consensus 83 g~~~A~--~d~l~flD~D~-i~~~~~i~~~~~ 111 (281)
T PF10111_consen 83 GAKYAR--GDYLIFLDADC-IPSPDFIEKLLN 111 (281)
T ss_pred HHHHcC--CCEEEEEcCCe-eeCHHHHHHHHH
Confidence 444443 78999999999 889999999998
No 133
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=93.26 E-value=1.5 Score=33.60 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=54.4
Q ss_pred eCCeehHHHHHHHHhcCCCc--CeEEEEeCCCc--h-HHHHHHHHhcC-CcEEEe--c--C--CccHHHHHHHHHhhccc
Q 028081 12 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSY--S-DIFEETKEKIN-VDLKFS--L--P--GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~--~~iiVv~~~~~--~-~~~~~~~~~~~-~~~~~~--~--~--~~~~~~sv~~al~~~~~ 79 (214)
.++...|..+++.+.+...- -+|+|+-+... . +.+++...++. ..+.+. . . ..+...+.-.|++...
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~- 84 (219)
T cd06913 6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS- 84 (219)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC-
Confidence 45667888899988754321 26777655432 1 12233222222 123222 1 1 1233344445665543
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++++|+|. +..++.+.+++..+.+...
T Consensus 85 -gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 85 -GRYLCFLDSDD-VMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred -CCEEEEECCCc-cCChhHHHHHHHHHHhCCC
Confidence 68999999998 5677888888877655433
No 134
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=2.7 Score=31.60 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=87.4
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCC--C--chHHHHHHHHhcCCcEEEecCCccHHHHHHHHH-hhcccCCCeEEEEcCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDP--S--YSDIFEETKEKINVDLKFSLPGKERQDSVYSGL-QEVDFNSELVCIHDSA 90 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al-~~~~~~~~~vl~~~~d 90 (214)
-|++|++++..+.+...+.+.-+++ . +...++.+. |....+-..|+...+-+..+. ..+. ....|+++--|
T Consensus 38 ~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~L---g~~lvyqpqGdd~gdRlars~~~a~~-~~~~VliIg~D 113 (211)
T COG3222 38 QLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWL---GSFLVYQPQGDDLGDRLARSHVDAFD-GSYPVLIIGMD 113 (211)
T ss_pred HHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHh---hhheeecccCCCHHHHHHHHHHHHhc-CCCcEEEEecC
Confidence 4789999998887656555554442 1 123344433 333444445554444443332 2222 23568888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCC-CC
Q 028081 91 RPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VT 169 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~-~~ 169 (214)
+|-++.+.+..++.++....++. -|..+ +|+-.--+.| ..|..| +...-.+.. +.
T Consensus 114 cP~lt~elLa~a~taL~~~paVL--Gpa~d-------GGy~llgLrr------~~pe~f---------e~ipwg~~~v~~ 169 (211)
T COG3222 114 CPGLTAELLADAFTALLQIPAVL--GPAFD-------GGYYLLGLRR------FAPELF---------EAIPWGTPDVLE 169 (211)
T ss_pred CCccCHHHHHHHHHHHhcCccee--ccccc-------CcEEEEEeec------cCHHHH---------hcCCCCCchHHH
Confidence 99999999999998876655332 22222 4431100000 012111 111000000 00
Q ss_pred cHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 170 DDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 170 d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
-....++++|..++.++ ...|||.|+|+.++..+..
T Consensus 170 lTl~~lrqng~~~~llp---~L~DvDrpdDLp~l~~~~~ 205 (211)
T COG3222 170 LTLKALRQNGIDVYLLP---RLGDVDRPDDLPLLRDCCA 205 (211)
T ss_pred HHHHHHHHcCCcccccC---ccccCCCcchhHHHHHhcc
Confidence 01334566777766553 4579999999999887654
No 135
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=93.19 E-value=1.9 Score=33.81 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCeehHHHHHHHHhcCC-C--cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEec--CCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFSRMV-E--VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~--~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~--~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+...-|..+++.+.+.. . --+|+|+-+... .+.++++.+.++ ..+.++. +..+...+...|+.... .++
T Consensus 19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~~ 96 (243)
T PLN02726 19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GDF 96 (243)
T ss_pred CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CCE
Confidence 45566666666554321 1 126666644322 122333333333 2343332 22233556667777654 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++|+|.- .+++.+..+++.+...+.
T Consensus 97 i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 123 (243)
T PLN02726 97 VVIMDADLS-HHPKYLPSFIKKQRETGA 123 (243)
T ss_pred EEEEcCCCC-CCHHHHHHHHHHHHhcCC
Confidence 999999996 599999999987755443
No 136
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.11 E-value=1.1 Score=34.03 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHhcCC-----CcCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMV-----EVKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-----~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~ 82 (214)
+...-|..+++.+.+.. .-.+|+|+-+... .+.+++....++..+.++. ...+...++..|++... .+
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--gd 84 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--GD 84 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--CC
Confidence 44455666777765431 1246777644332 1223333333343223332 22334666777887765 68
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+++++|+|. ..+++.+.++++.+...+
T Consensus 85 ~i~~ld~D~-~~~~~~l~~l~~~~~~~~ 111 (211)
T cd04188 85 YILFADADL-ATPFEELEKLEEALKTSG 111 (211)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhccC
Confidence 999999998 568999999998754433
No 137
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.06 E-value=2.9 Score=33.89 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=57.2
Q ss_pred CCe-ehHHHHHHHHhcCCC--c-CeEEEEeCCCchHHHHHHH-----HhcCCcEEEecC--CccHHHHHHHHHhhcccCC
Q 028081 13 LGQ-PIALYSFYTFSRMVE--V-KEIVVVCDPSYSDIFEETK-----EKINVDLKFSLP--GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 13 ~gk-pli~~~i~~~~~~~~--~-~~iiVv~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~ 81 (214)
+.. ..|..+++.+.+... . .+||||-+... +...+.+ ......+.++.. ..+...+.-.|++... .
T Consensus 8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~-d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--g 84 (299)
T cd02510 8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSD-KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--G 84 (299)
T ss_pred cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC-chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--C
Confidence 344 588889998875321 1 37888765442 2122221 222224555432 2223444455666654 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++|+|.=+ +++-++.+++.+.....
T Consensus 85 d~i~fLD~D~~~-~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 85 DVLVFLDSHCEV-NVGWLEPLLARIAENRK 113 (299)
T ss_pred CEEEEEeCCccc-CccHHHHHHHHHHhCCC
Confidence 999999999954 89999999998865443
No 138
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=92.99 E-value=2.8 Score=38.69 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=61.7
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCc-C--eEEEEeCCC-----------------chHHHHHHHHhcCCcEEEecC-Ccc
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPS-----------------YSDIFEETKEKINVDLKFSLP-GKE 65 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~-~--~iiVv~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~ 65 (214)
+.|..+.+ ++..+++++.+...- + +|+|+-|.. ..+.++++++++++.+..... ...
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~ 215 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHA 215 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCC
Confidence 55666665 567789888764422 2 567665431 113455666666543322121 112
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 66 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 66 ~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
....+-+|++... .|+++++|+|. ..+++.+++++..+...
T Consensus 216 KAgnLN~al~~a~--gd~Il~lDAD~-v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 216 KAGNINNALKHTD--GELILIFDADH-VPTRDFLQRTVGWFVED 256 (713)
T ss_pred ChHHHHHHHHhcC--CCEEEEECCCC-CcChhHHHHHHHHHHhC
Confidence 2556777887765 68999999999 56899999999887543
No 139
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=92.81 E-value=2.6 Score=36.48 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=59.3
Q ss_pred eeee-CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCC
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~ 81 (214)
+.+. +...-|..+++++.+... --+|+|+.+... .+.+++....+. .+.++. ...+...+.-.|+.... .
T Consensus 80 iIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~--~ 156 (444)
T PRK14583 80 LVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAAR--S 156 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCC--C
Confidence 4443 445668889988876421 136777755432 122333333332 333332 33344666677776654 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
|+++++|+|. ..+++.+.++++.+.+
T Consensus 157 d~iv~lDAD~-~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 157 EYLVCIDGDA-LLDKNAVPYLVAPLIA 182 (444)
T ss_pred CEEEEECCCC-CcCHHHHHHHHHHHHh
Confidence 9999999999 6799999999987754
No 140
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=92.77 E-value=2.8 Score=35.31 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=60.2
Q ss_pred eeee-CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEecC----Cc-cHHHHHHHHHhhc
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEV 77 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~~----~~-~~~~sv~~al~~~ 77 (214)
+.|. |..+.|..+++++.+... --+|+|+.++.. .+.+++..+.+. .++.++.. |. .......++++..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 4443 567889999999875432 147777654432 122344444443 23444422 11 1234455555554
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
. .|+++++|+|. .++++-+++++..++..+
T Consensus 126 ~--ge~i~~~DaD~-~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 126 R--HDILVIADSDI-SVGPDYLRQVVAPLADPD 155 (373)
T ss_pred c--CCEEEEECCCC-CcChhHHHHHHHHhcCCC
Confidence 3 79999999998 669999999998875433
No 141
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.62 E-value=2.4 Score=31.96 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=54.7
Q ss_pred eCCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCCeEE
Q 028081 12 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
.+....|..+++.+.+... --+|+|+-+... .+.+++....++..+.+.. ...+...+...|+.... .++++
T Consensus 7 yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~ 84 (214)
T cd04196 7 YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVF 84 (214)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEE
Confidence 3455678888888875431 135666644322 1223333333322233332 22234555566766554 79999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHh
Q 028081 86 IHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++|+|- .+.++.+..+++.+..
T Consensus 85 ~ld~Dd-~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 85 FCDQDD-IWLPDKLERLLKAFLK 106 (214)
T ss_pred EECCCc-ccChhHHHHHHHHHhc
Confidence 999997 5579999999987443
No 142
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=92.53 E-value=2 Score=32.68 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred CeehHHHHHHHHhcCCCcC-eEEEEeCCC---chHHHHHHHHhcCC-cEEEec--CCccHHHHHHHHHhhcccCCCeEEE
Q 028081 14 GQPIALYSFYTFSRMVEVK-EIVVVCDPS---YSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~-~iiVv~~~~---~~~~~~~~~~~~~~-~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+-|++.|.+.........+ +||++-+.. ..+..+++.+.+|. ++.+.+ +--+-..+..+|+.++. .+++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fivi 94 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIVI 94 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEEE
Confidence 4577888777665422333 566654322 12334444444664 333332 22223566788998886 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|--- .|..|-++++...++
T Consensus 95 MDaDlsH-hPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 95 MDADLSH-HPKFIPEFIRLQKEG 116 (238)
T ss_pred EeCccCC-CchhHHHHHHHhhcc
Confidence 9999844 688899999876554
No 143
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.49 E-value=3.2 Score=31.95 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=54.5
Q ss_pred eeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-CCcEEEec--CCccHHHHHHHHHhhccc-CCCeE
Q 028081 10 LPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSL--PGKERQDSVYSGLQEVDF-NSELV 84 (214)
Q Consensus 10 ~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~sv~~al~~~~~-~~~~v 84 (214)
...++. ..|..+++.+.+. ..+|+|+=+... +..... ..+ ...+.++. ...+...+.-.|++.... +.+++
T Consensus 4 ~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~-~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 4 VTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELR-LRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred EEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHH-hhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 346677 8899999998864 467777644432 222222 222 22343332 222334555567766542 46999
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVL 103 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i 103 (214)
+++|+|.- ++++.+..++
T Consensus 80 ~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEECCCCC-cCHhHHHHHH
Confidence 99999995 5899999996
No 144
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=92.09 E-value=2.4 Score=34.65 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=61.0
Q ss_pred ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-CCcEEEecCCccH--HHHHHHHHhhcccC-CC
Q 028081 7 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKER--QDSVYSGLQEVDFN-SE 82 (214)
Q Consensus 7 K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~sv~~al~~~~~~-~~ 82 (214)
..+...+...-+..+++.+.+....+..+|+++....+...+.++.. ...+.++..+... ..+.-.|+.....+ ++
T Consensus 7 ~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 7 IIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCc
Confidence 34566788888999999888766555555544433222233334433 3345555332211 22222233333222 23
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++.|. .+.++.|+++++.+...+.
T Consensus 87 ~~l~LN~D~-~~~~~~l~~ll~~~~~~~~ 114 (305)
T COG1216 87 YVLLLNPDT-VVEPDLLEELLKAAEEDPA 114 (305)
T ss_pred EEEEEcCCe-eeChhHHHHHHHHHHhCCC
Confidence 899999995 6689999999998887644
No 145
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=91.43 E-value=0.5 Score=41.29 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhcCC------------CcCeEEEEeCCCchHHHHHHHHhc---CC---cEE-
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSRMV------------EVKEIVVVCDPSYSDIFEETKEKI---NV---DLK- 58 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~~~------------~~~~iiVv~~~~~~~~~~~~~~~~---~~---~~~- 58 (214)
||.+.||+++++ .|||++++.+++++... ..-.++|.|.....+.+.+..++. |. .+.
T Consensus 120 Lg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~ 199 (482)
T PTZ00339 120 LGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIF 199 (482)
T ss_pred CCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEE
Confidence 567889999999 59999999999998641 112456665544334555555431 21 111
Q ss_pred -------------------------EecCCccHHHHHHHHHhh------cc-cCCCeEEEEcCCCCCC---CHHHHHHHH
Q 028081 59 -------------------------FSLPGKERQDSVYSGLQE------VD-FNSELVCIHDSARPLV---LSKDVQKVL 103 (214)
Q Consensus 59 -------------------------~~~~~~~~~~sv~~al~~------~~-~~~~~vl~~~~d~P~v---~~~~i~~~i 103 (214)
+.++| .+.++.+|.. +. ...+++.+...|-++. +|..|-.++
T Consensus 200 F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G---nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~ 276 (482)
T PTZ00339 200 FKQSSLPCYDENTGRFIMSSQGSLCTAPGG---NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLAS 276 (482)
T ss_pred EecCCcceEecCCCCcccCCCCceeeCCCC---CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHH
Confidence 12222 2345555432 22 2367899999999966 666666655
Q ss_pred H
Q 028081 104 M 104 (214)
Q Consensus 104 ~ 104 (214)
+
T Consensus 277 ~ 277 (482)
T PTZ00339 277 S 277 (482)
T ss_pred H
Confidence 4
No 146
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=91.41 E-value=3.9 Score=31.57 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=53.5
Q ss_pred eCCeehHHHHHHHHhcCCCc-C--eEEEEeCCCc--hHHHHHHHHhc---CCcEEEecCC--cc-HHHHHHHHHhhcccC
Q 028081 12 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSY--SDIFEETKEKI---NVDLKFSLPG--KE-RQDSVYSGLQEVDFN 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~--~iiVv~~~~~--~~~~~~~~~~~---~~~~~~~~~~--~~-~~~sv~~al~~~~~~ 80 (214)
.+....|..+++++.+.... + +|+|+-+..+ .+.+++....+ +.++...... .+ ...++-.|++...
T Consensus 10 yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~-- 87 (232)
T cd06437 10 FNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAK-- 87 (232)
T ss_pred CCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCC--
Confidence 46667888999998754322 2 4555544322 12223332222 2334433211 11 2345556777654
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
.++++++|+|. .+.++.++.+...+.
T Consensus 88 ~~~i~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 88 GEYVAIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred CCEEEEEcCCC-CCChHHHHHhhhhhc
Confidence 79999999999 568999999766553
No 147
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=91.41 E-value=4.4 Score=29.69 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=53.4
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhc----CCcEEEe-cC--CccHHHHHHHHHhhcccCCCeE
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKI----NVDLKFS-LP--GKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~----~~~~~~~-~~--~~~~~~sv~~al~~~~~~~~~v 84 (214)
+....|..+++++.+... -.+|+|+-+... +...+.++.+ ..++..+ .. +.+...+.-.|++... .+++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i 83 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYL 83 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEE
Confidence 445668888999875432 246777655443 3333334332 2222222 21 1122334445666554 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~ 106 (214)
+++|+|. ..+++-+.++++.+
T Consensus 84 ~~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 84 IFIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEEcCCc-ccCHHHHHHHHHHh
Confidence 9999998 66899999998876
No 148
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=91.19 E-value=0.26 Score=40.80 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcCCCc----------CeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRMVEV----------KEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~~~~----------~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||...||.+++++ |||+++|.++.+++.... =.+++.|+...-+.+.+..++
T Consensus 29 Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 29 LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFKE 93 (323)
T ss_pred cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHHh
Confidence 4566799999998 799999999999874211 135566663322445555543
No 149
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.94 E-value=5.4 Score=29.93 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEecC----Cc-cHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~~----~~-~~~~sv~~al~~~~~~~~ 82 (214)
++.+-|..+++.+.+... --+|+||.+... .+.++++...+. ..+.++.. |. .....+..|++... .+
T Consensus 11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d 88 (196)
T cd02520 11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YD 88 (196)
T ss_pred CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CC
Confidence 456678888988875321 146777665443 122333333333 23333311 11 12233445666554 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++++|+|. .++++.+..+++.+..
T Consensus 89 ~i~~~D~D~-~~~~~~l~~l~~~~~~ 113 (196)
T cd02520 89 ILVISDSDI-SVPPDYLRRMVAPLMD 113 (196)
T ss_pred EEEEECCCc-eEChhHHHHHHHHhhC
Confidence 999999998 5699999999987643
No 150
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=90.42 E-value=13 Score=34.36 Aligned_cols=100 Identities=6% Similarity=0.080 Sum_probs=59.9
Q ss_pred eeeeeCCeeh------HHHHHHHHhcCCCcC--eEEEEeCCCchH-------HHHHHHHhcC--CcEEEec---CCccHH
Q 028081 8 QYLPLLGQPI------ALYSFYTFSRMVEVK--EIVVVCDPSYSD-------IFEETKEKIN--VDLKFSL---PGKERQ 67 (214)
Q Consensus 8 ~l~~l~gkpl------i~~~i~~~~~~~~~~--~iiVv~~~~~~~-------~~~~~~~~~~--~~~~~~~---~~~~~~ 67 (214)
.+.|+.|.+. |+-+++.+...+.-+ +++|+.|..+-+ .+.+++++++ .++.+.. +.....
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 4567777774 555565554433222 567776654311 1224445553 2344431 221224
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 68 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 68 ~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
..+..+++.....+|+++++|+|. .++++.+.+++..+..
T Consensus 208 GNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~~lv~~m~~ 247 (691)
T PRK05454 208 GNIADFCRRWGGAYDYMVVLDADS-LMSGDTLVRLVRLMEA 247 (691)
T ss_pred HHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHHHHHHHHhh
Confidence 456666666544579999999999 8899999999988764
No 151
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=90.32 E-value=4.1 Score=33.87 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCeehHHHHHHHHhcC---------CCcCeEEEEeCCCc---hHHHHHHHHhc---CCcEEEec--CCccHHHHHHHHHh
Q 028081 13 LGQPIALYSFYTFSRM---------VEVKEIVVVCDPSY---SDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQ 75 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~---------~~~~~iiVv~~~~~---~~~~~~~~~~~---~~~~~~~~--~~~~~~~sv~~al~ 75 (214)
+..+-|..+++.+.+. ..--+|+||-+... .+.+++....+ +..+.++. ...+...++..|+.
T Consensus 80 Ne~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~ 159 (333)
T PTZ00260 80 NEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGML 159 (333)
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 6667788887776531 11246777654322 12223333322 11244432 22244666778887
Q ss_pred hcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 76 EVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 76 ~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
... .++++++|+|. ..+++.+.++++.+..
T Consensus 160 ~a~--gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 160 ASR--GKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred Hcc--CCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 654 68999999998 4578888888887653
No 152
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=89.83 E-value=2.2 Score=28.14 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=45.9
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCc---cHHHHHHHHHhhcccCCCeEEEEcCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGK---ERQDSVYSGLQEVDFNSELVCIHDSA 90 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~sv~~al~~~~~~~~~vl~~~~d 90 (214)
-++|..-+.-.++.+ +++++|..+... +...+.++.+. ..+....... .+.....+++.......++++.+|+|
T Consensus 4 ~~~L~~wl~~~~~lG-~d~i~i~d~~s~-D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~D 81 (97)
T PF13704_consen 4 ADYLPEWLAHHLALG-VDHIYIYDDGST-DGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDAD 81 (97)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEECCCC-ccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeee
Confidence 356777777777664 899999877554 33455555543 2222222211 12333444443322257999999999
Q ss_pred CCCCCHH
Q 028081 91 RPLVLSK 97 (214)
Q Consensus 91 ~P~v~~~ 97 (214)
.=+..+.
T Consensus 82 Efl~~~~ 88 (97)
T PF13704_consen 82 EFLVPPP 88 (97)
T ss_pred EEEecCC
Confidence 8665443
No 153
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=89.70 E-value=8.4 Score=30.78 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=55.3
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCC-chHHHHHHHHhcCCcEEEecCC--ccHHHHHHHHHhhcc-cCCCeEEEEcCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVD-FNSELVCIHDSAR 91 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~sv~~al~~~~-~~~~~vl~~~~d~ 91 (214)
..|..+++++.+. ..+|+||=+.. ..+.++++...+ ..+.++..+ .+...+.-.|++.+. ...|+++++|.|.
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4677888888754 46777775542 112344433333 245554322 122444555665542 2479999999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
.+.++.+..+++.+...
T Consensus 85 -~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 -RPGNAFLAAQWKLLSAE 101 (281)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 55789999999887654
No 154
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=88.70 E-value=2.1 Score=32.79 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=53.2
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCC-cEEEecCCc-----cHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINV-DLKFSLPGK-----ERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~-~~~~~~~~~-----~~~~sv~~al~~~~~~~~ 82 (214)
+..+.|..+++++.+...- -+|+|+.+... .+.++++...++. .+.++.... +...++..|++... .+
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d 88 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR--GD 88 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----S
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC--CC
Confidence 3447888999998864211 34566554332 1234444445542 345443211 22455666777665 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+++++|+|. .++++.++.+++.+...+
T Consensus 89 ~i~~lD~D~-~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 89 YILFLDDDT-VLDPDWLERLLAAFADPG 115 (228)
T ss_dssp EEEEE-SSE-EE-CHHHHHHHHHHHBSS
T ss_pred EEEEECCCc-EECHHHHHHHHHHHHhCC
Confidence 999999998 559999999999884333
No 155
>PRK10018 putative glycosyl transferase; Provisional
Probab=86.37 E-value=15 Score=29.77 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=57.3
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCc-hHHHHHHHHhcC-CcEEEecCC--ccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY-SDIFEETKEKIN-VDLKFSLPG--KERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~-~~~~~~~~~~~~-~~~~~~~~~--~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+....|..+++.+.+...- -+|+||-+... .+.+.+.+..++ ..+.++... .+...+.-.|++... .+++++
T Consensus 14 yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~--g~~I~~ 91 (279)
T PRK10018 14 WNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQ--GEYITG 91 (279)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 36777888999988754321 26666644332 133455554432 345554332 222344445776654 789999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHh
Q 028081 87 HDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|+|- ...|+.+..+++.+..
T Consensus 92 lDaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCC-CCCccHHHHHHHHHHh
Confidence 99998 5568889988887654
No 156
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=86.20 E-value=19 Score=30.13 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=57.6
Q ss_pred eeeeCCee-hHHHHHHHHhcCC-C--cCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---Ccc------------H-HH
Q 028081 9 YLPLLGQP-IALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKE------------R-QD 68 (214)
Q Consensus 9 l~~l~gkp-li~~~i~~~~~~~-~--~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~-~~ 68 (214)
++...++| -+..+++++++.. . -.+|+|+.+... +...+.++.++..+..+.. +.. . ..
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~-~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~ 83 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY-EEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIAR 83 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCc-hHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHH
Confidence 45567778 6999999998752 1 256888876554 3345556555322222211 100 1 11
Q ss_pred HHHHHHhhccc--CCCeEEEEcCCCCCCCHHHHHHH---HHHHHhcCCe
Q 028081 69 SVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKV---LMDALRVGAA 112 (214)
Q Consensus 69 sv~~al~~~~~--~~~~vl~~~~d~P~v~~~~i~~~---i~~~~~~~~~ 112 (214)
....|+..+-. ..+.+++++.|. .++|+-+..+ ++.++....+
T Consensus 84 hyk~aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~~v 131 (334)
T cd02514 84 HYKWALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDPSL 131 (334)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCCCE
Confidence 12225544311 368999999999 8899866554 4444443333
No 157
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=82.70 E-value=22 Score=28.25 Aligned_cols=99 Identities=7% Similarity=0.121 Sum_probs=56.8
Q ss_pred eeeeeCCeeh--HHHHHHHHhc-------CCCcCeEEEEeCCCchH-H------HHHHHHhcC--CcEEEec--CCccH-
Q 028081 8 QYLPLLGQPI--ALYSFYTFSR-------MVEVKEIVVVCDPSYSD-I------FEETKEKIN--VDLKFSL--PGKER- 66 (214)
Q Consensus 8 ~l~~l~gkpl--i~~~i~~~~~-------~~~~~~iiVv~~~~~~~-~------~~~~~~~~~--~~~~~~~--~~~~~- 66 (214)
.|.|+.|.+. +.-+++++.+ .+. =+|+|+-+..+-+ . +.+++..++ ..+.+.. ...+.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~-~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADH-FDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCc-eEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 3678888774 5666666542 122 3666554433311 1 112333332 2344432 22222
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 67 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 67 ~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.+.+..++......+++++++|+|. .+.|+.+.+++..+..
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~ 122 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEA 122 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHh
Confidence 4445556654323478999999999 8899999999998864
No 158
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=78.41 E-value=4.4 Score=32.22 Aligned_cols=92 Identities=9% Similarity=0.080 Sum_probs=54.0
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL 93 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~ 93 (214)
-..|...++.+.+++.+.+|+|+=+.+.. ...... ...+.++.++.+....+..-..-...++ .+.|+.+|-|. .
T Consensus 12 ~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~-~~~~vpV~~~~~~~nsLnnRF~p~~~i~--T~AVl~~DDDv-~ 87 (247)
T PF09258_consen 12 SDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKW-PSTGVPVRVVRSSRNSLNNRFLPDPEIE--TDAVLSLDDDV-M 87 (247)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHH-T---S-EEEEEESSHHGGGGGS--TT----SSEEEEEETTE-E
T ss_pred hHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCccccc-CCCCceEEEEecCCccHHhcCcCccccC--cceEEEecCCc-c
Confidence 45788899999999999999999776431 101111 1233566666543211111122223333 68999999996 6
Q ss_pred CCHHHHHHHHHHHHhcC
Q 028081 94 VLSKDVQKVLMDALRVG 110 (214)
Q Consensus 94 v~~~~i~~~i~~~~~~~ 110 (214)
++.+.|+.+++..++..
T Consensus 88 ~~~~~l~faF~~W~~~p 104 (247)
T PF09258_consen 88 LSCDELEFAFQVWREFP 104 (247)
T ss_dssp E-HHHHHHHHHHHCCST
T ss_pred cCHHHHHHHHHHHHhCh
Confidence 69999999999887643
No 159
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=77.45 E-value=39 Score=30.00 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=53.0
Q ss_pred eCCeehHHHHHHHHh-cCCCc-CeEEEEeCCCc---hHHHHHHHHhcCC-cEEEe--cCCccHHHHHHHHHhhc---c--
Q 028081 12 LLGQPIALYSFYTFS-RMVEV-KEIVVVCDPSY---SDIFEETKEKINV-DLKFS--LPGKERQDSVYSGLQEV---D-- 78 (214)
Q Consensus 12 l~gkpli~~~i~~~~-~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~-~~~~~--~~~~~~~~sv~~al~~~---~-- 78 (214)
.+....|..+++.+. +...- -+|+|+.++.. .+.++++..++.. .+... .|+.+...++-.|++.+ +
T Consensus 75 ~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~ 154 (504)
T PRK14716 75 WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERE 154 (504)
T ss_pred cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 367778999999753 33211 26777764332 1234444444432 11122 23333455665566543 1
Q ss_pred --cCCCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 79 --FNSELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 79 --~~~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
...|+++++|+|. .++|+.++.+...
T Consensus 155 ~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 155 RGIRFAIIVLHDAED-VIHPLELRLYNYL 182 (504)
T ss_pred cCCCcCEEEEEcCCC-CcCccHHHHHHhh
Confidence 1348999999988 6889888765433
No 160
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=73.74 E-value=16 Score=27.28 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEEeeec
Q 028081 67 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPA 118 (214)
Q Consensus 67 ~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~~~~~ 118 (214)
...+..+++. ...+|++++.|+|. .++++.+..++..+...+ ..+++.|.
T Consensus 19 v~nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~p~vglVt~~~~ 69 (175)
T PF13506_consen 19 VNNLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLADPGVGLVTGLPR 69 (175)
T ss_pred HHHHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhCCCCcEEEeccc
Confidence 5667777776 22479999999999 889999999998886533 24444443
No 161
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=73.33 E-value=33 Score=25.41 Aligned_cols=30 Identities=3% Similarity=-0.063 Sum_probs=13.9
Q ss_pred CCcCeEEEEeCCCchHHHHHHHHhcCCcEE
Q 028081 29 VEVKEIVVVCDPSYSDIFEETKEKINVDLK 58 (214)
Q Consensus 29 ~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~ 58 (214)
+.+|.+++++++.+-..+...++..|..+.
T Consensus 104 ~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 104 PNIDAVALVTRDADFLPVINKAKENGKETI 133 (160)
T ss_pred CCCCEEEEEeccHhHHHHHHHHHHCCCEEE
Confidence 445666666655543223333334454443
No 162
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=71.95 E-value=43 Score=27.80 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=48.4
Q ss_pred ceeeeeCCee---hHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCc--EEEecC--CccHHHHHHHHHhhc--
Q 028081 7 KQYLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEV-- 77 (214)
Q Consensus 7 K~l~~l~gkp---li~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~sv~~al~~~-- 77 (214)
|.+.-.+.+| ++..+++++++.+.++-.+|+|+... +.+.++.+.++.. +.+..+ +.+...+...++..+
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEE 80 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHH
Confidence 4455556665 67889999988777888899998664 4455555566643 333322 233333333333222
Q ss_pred --c-cCCCeEEEEcCCC
Q 028081 78 --D-FNSELVCIHDSAR 91 (214)
Q Consensus 78 --~-~~~~~vl~~~~d~ 91 (214)
. ...|+|++| ||+
T Consensus 81 ~l~~~~pDiv~~~-gd~ 96 (365)
T TIGR00236 81 LLLEEKPDIVLVQ-GDT 96 (365)
T ss_pred HHHHcCCCEEEEe-CCc
Confidence 1 135877776 665
No 163
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=70.49 E-value=49 Score=25.81 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
..++++++|+|.- ++++.|..+++.+..
T Consensus 73 ~~e~i~~~DaD~~-~~~~~l~~l~~~~~~ 100 (244)
T cd04190 73 DPEFILLVDADTK-FDPDSIVQLYKAMDK 100 (244)
T ss_pred CCCEEEEECCCCc-CCHhHHHHHHHHHHh
Confidence 4799999999995 489999999988854
No 164
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.24 E-value=30 Score=22.90 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=44.1
Q ss_pred EEEEeCC-CchHHHHHHHHhcCCcEEEe--cCCccHHH-HHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 34 IVVVCDP-SYSDIFEETKEKINVDLKFS--LPGKERQD-SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 34 iiVv~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
|+|+.+. +....+++.++++|....+. .++..... .+...+ . ..|.|+++.. +++-+....+-+..+..
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i---~-~aD~VIv~t~---~vsH~~~~~vk~~akk~ 74 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI---K-KADLVIVFTD---YVSHNAMWKVKKAAKKY 74 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc---C-CCCEEEEEeC---CcChHHHHHHHHHHHHc
Confidence 5677662 33467888888999877666 23222221 122222 2 4688888877 88888888877776655
Q ss_pred C
Q 028081 110 G 110 (214)
Q Consensus 110 ~ 110 (214)
+
T Consensus 75 ~ 75 (97)
T PF10087_consen 75 G 75 (97)
T ss_pred C
Confidence 4
No 165
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=66.73 E-value=18 Score=27.16 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=39.1
Q ss_pred cCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 31 VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 31 ~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
+++||||=+.++...++.+ +.+.+ +.++|..-......-+..+....+.+++.|+|.| .+-|++.+...
T Consensus 2 IkevIVVEGK~D~~~lk~~---~d~~~-I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~---GekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQA---FDVDV-IETNGSALKDETINLIKKAQKKQGVIILTDPDFP---GEKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHh---cCceE-EEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc---hHHHHHHHHHH
Confidence 6789999776654334332 33333 3344443222333333333334578899999886 56787777653
No 166
>PRK10063 putative glycosyl transferase; Provisional
Probab=61.36 E-value=79 Score=24.90 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=45.5
Q ss_pred eCCeehHHHHHHHHhcC---CCc-CeEEEEeCCCchHHHHHHHHhcCC--cEEEecC-CccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQPIALYSFYTFSRM---VEV-KEIVVVCDPSYSDIFEETKEKINV--DLKFSLP-GKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~---~~~-~~iiVv~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~sv~~al~~~~~~~~~v 84 (214)
.+....|..+++.+.+. ... -+|+|+=+.. .+...++++.+.. ++.++.. ..+...+.-.|++... .+++
T Consensus 10 yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~~~~~G~~~A~N~Gi~~a~--g~~v 86 (248)
T PRK10063 10 FRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQ--GRFA 86 (248)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEECCCCCHHHHHHHHHHHcC--CCEE
Confidence 45666788888888531 111 2566653322 2334455555431 3444432 2233455666777664 6899
Q ss_pred EEEcCCCCCCCHHHH
Q 028081 85 CIHDSARPLVLSKDV 99 (214)
Q Consensus 85 l~~~~d~P~v~~~~i 99 (214)
+++++|-=+ .++.+
T Consensus 87 ~~ld~DD~~-~~~~~ 100 (248)
T PRK10063 87 LFLNSGDIF-HQDAA 100 (248)
T ss_pred EEEeCCccc-CcCHH
Confidence 999976533 34433
No 167
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.01 E-value=43 Score=25.90 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=38.1
Q ss_pred CeEEEEeC-CCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHH
Q 028081 32 KEIVVVCD-PSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV 99 (214)
Q Consensus 32 ~~iiVv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i 99 (214)
.++++.++ +.+=+.++..++++|....--.+..+...++...+.++++..+.++..|+ |==+...+
T Consensus 68 ~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpDg--PkGp~~~~ 134 (214)
T COG2121 68 KKIYAMVSPSRDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALKQGKSIAITPDG--PKGPVHKI 134 (214)
T ss_pred CcEEEEEcCCcCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCCC--CCCCceec
Confidence 44555444 33335577788888865422222333467778888888866666665555 55444433
No 168
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=58.79 E-value=73 Score=23.66 Aligned_cols=72 Identities=7% Similarity=0.125 Sum_probs=40.1
Q ss_pred cCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccH-HHHHHHHHhhcc-----cCCCeEEEEcCCCCCCCHHHHHHH
Q 028081 31 VKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKV 102 (214)
Q Consensus 31 ~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~~~-----~~~~~vl~~~~d~P~v~~~~i~~~ 102 (214)
-.+.++|+++.+. .-++..++..|..+.++.-..-+ ..+...|++... ...|.++...|....++.++++.|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~m 100 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQM 100 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHh
Confidence 4678888898875 33566667778777665432211 333333332221 246888888999999999988775
No 169
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=57.88 E-value=46 Score=21.11 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=31.0
Q ss_pred EEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCC
Q 028081 35 VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 92 (214)
Q Consensus 35 iVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P 92 (214)
++++.+.+=+.+..+++.+|....--....+...+++..++++++..+. .+.+|=|
T Consensus 14 ~lvS~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~--~itpDGP 69 (74)
T PF04028_consen 14 ALVSRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKEGYSI--AITPDGP 69 (74)
T ss_pred EEEccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeE--EEeCCCC
Confidence 3344444436677888888854322222233466777778888743444 3445555
No 170
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=49.45 E-value=92 Score=22.04 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=6.1
Q ss_pred cCeEEEEeCCCc
Q 028081 31 VKEIVVVCDPSY 42 (214)
Q Consensus 31 ~~~iiVv~~~~~ 42 (214)
++.+++++++.+
T Consensus 100 ~d~ivLvSgD~D 111 (149)
T cd06167 100 IDTIVLVSGDSD 111 (149)
T ss_pred CCEEEEEECCcc
Confidence 455555555443
No 171
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=46.84 E-value=1e+02 Score=21.90 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=49.7
Q ss_pred eCCeehHHHHHHHHhcCCCcC-eEEEEeCCCchHHHHHHHHhcCCc---EEEe--cCCccHHHHHHHHHhhcccCCCeEE
Q 028081 12 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKINVD---LKFS--LPGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~-~iiVv~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
.+....|..+++.+.+....+ +|+||-+.. .+...+.+..+... +... ....+...+...++.... .++++
T Consensus 12 ~n~~~~l~~~l~s~~~q~~~~~eiivvddgs-~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~ 88 (291)
T COG0463 12 YNEEEYLPEALESLLNQTYKDFEIIVVDDGS-TDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYAR--GDYIV 88 (291)
T ss_pred cchhhhHHHHHHHHHhhhhcceEEEEEeCCC-CCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhcc--CCEEE
Confidence 456678888999887654333 655554432 23334444444322 2222 122233455566666665 48999
Q ss_pred EEcCCCCCCCHHHHHHHHHH
Q 028081 86 IHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~ 105 (214)
.+++|-- .++.... +++.
T Consensus 89 ~~d~d~~-~~~~~~~-~~~~ 106 (291)
T COG0463 89 FLDADDQ-HPPELIP-LVAA 106 (291)
T ss_pred EEccCCC-CCHHHHH-HHHH
Confidence 9999997 5555444 4433
No 172
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.33 E-value=2.6e+02 Score=26.28 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=54.6
Q ss_pred CCeehHHHHHHHHh---cCCCcCeEEEEeCCC--c-hHHHHHHHHhcCC-cEEEe-c-CCccHHHHHHHHHhhcc-----
Q 028081 13 LGQPIALYSFYTFS---RMVEVKEIVVVCDPS--Y-SDIFEETKEKINV-DLKFS-L-PGKERQDSVYSGLQEVD----- 78 (214)
Q Consensus 13 ~gkpli~~~i~~~~---~~~~~~~iiVv~~~~--~-~~~~~~~~~~~~~-~~~~~-~-~~~~~~~sv~~al~~~~----- 78 (214)
+....|..+++.+. .-|. =+|+|+++.+ . .+.+++++..++. .+... . |..+...++-.++..+.
T Consensus 73 nE~~vi~~~i~~ll~~ldYP~-~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~ 151 (727)
T PRK11234 73 NETGVIGNMAELAATTLDYEN-YHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERS 151 (727)
T ss_pred cchhhHHHHHHHHHHhCCCCC-eEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 56778889998764 3343 2677775322 2 2345555555542 22122 2 23445677777777651
Q ss_pred --cCCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 79 --FNSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 79 --~~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
.+.+.++++|+|. .++|+.++ ++..+
T Consensus 152 ~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l 179 (727)
T PRK11234 152 ANFAFAGFILHDAED-VISPMELR-LFNYL 179 (727)
T ss_pred cCCcccEEEEEcCCC-CCChhHHH-HHHhh
Confidence 1346788899999 88999997 44444
No 173
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.03 E-value=1.9e+02 Score=24.23 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=52.3
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCC----chHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcc-cCCCeEEEEcCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPS----YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSA 90 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~-~~~~~vl~~~~d 90 (214)
+=|.-....+++.+ .+|+++.++. .++.++.+.++.|+++.-...|.++.+.++.|+++.. ...|.|++=.+=
T Consensus 154 TTIaKLA~~l~~~g--~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 154 TTIAKLAKYLKQQG--KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred hHHHHHHHHHHHCC--CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcc
Confidence 45566666666544 5677766654 2344566667777654332345677777888888764 357877766665
Q ss_pred CCCCCHHHHHHHH
Q 028081 91 RPLVLSKDVQKVL 103 (214)
Q Consensus 91 ~P~v~~~~i~~~i 103 (214)
|=--..+.++.|-
T Consensus 232 RLhnk~nLM~EL~ 244 (340)
T COG0552 232 RLHNKKNLMDELK 244 (340)
T ss_pred cccCchhHHHHHH
Confidence 6444555555543
No 174
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=43.92 E-value=48 Score=27.47 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=36.2
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhcCCC-------c-CeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSRMVE-------V-KEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~~~~-------~-~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||-++++ .|+++++..+++++.... . =.++|-|++...+.+.+..++
T Consensus 14 LG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 14 LGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred cCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 688889999998 699999999998865321 1 134666665544556666653
No 175
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=42.85 E-value=1.4e+02 Score=24.88 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCC-cEEEe--cCCccHHHHHHHHHhhcc-----cCCCeEEEEcCCC
Q 028081 24 TFSRMVEVKEIVVVCDPSYS-DIFEETKEKINV-DLKFS--LPGKERQDSVYSGLQEVD-----FNSELVCIHDSAR 91 (214)
Q Consensus 24 ~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~~~~sv~~al~~~~-----~~~~~vl~~~~d~ 91 (214)
++++.+.++-++|+|+.... ..-....++++. .+.+. .+..+...++..++..+. ...|+|+++ ||+
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~-GD~ 77 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVL-GDR 77 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEE-TTS
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEE-cCC
Confidence 56777778999999997632 222233345654 33332 233344455555554442 135777654 886
No 176
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=42.45 E-value=2.2e+02 Score=24.35 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCcCeEEEEeCCCch---HHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCC
Q 028081 18 ALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 94 (214)
Q Consensus 18 i~~~i~~~~~~~~~~~iiVv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v 94 (214)
|..++.++.+.+ |+|++. +.-.- ..++.....+|+.+.++.... .+.+..+++. +...|++=....|++
T Consensus 83 i~~~l~~ll~~G--d~iv~~-~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d--~~~l~~~l~~---~t~~v~~EspsNP~l 154 (386)
T PF01053_consen 83 ISAALLALLKPG--DHIVAS-DDLYGGTYRLLEELLPRFGVEVTFVDPTD--LEALEAALRP---NTKLVFLESPSNPTL 154 (386)
T ss_dssp HHHHHHHHS-TT--BEEEEE-SSSSHHHHHHHHHCHHHTTSEEEEESTTS--HHHHHHHHCT---TEEEEEEESSBTTTT
T ss_pred HHHHHHhhcccC--CceEec-CCccCcchhhhhhhhcccCcEEEEeCchh--HHHHHhhccc---cceEEEEEcCCCccc
Confidence 455666666543 665554 43221 223444556787777775532 5566666643 356788888999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028081 95 LSKDVQKVLMDALRVG 110 (214)
Q Consensus 95 ~~~~i~~~i~~~~~~~ 110 (214)
..-+|.++.+..++++
T Consensus 155 ~v~Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 155 EVPDLEAIAKLAKEHG 170 (386)
T ss_dssp B---HHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhC
Confidence 9999999998887775
No 177
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=40.94 E-value=45 Score=24.07 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=22.2
Q ss_pred eeCCeehH---HHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEE
Q 028081 11 PLLGQPIA---LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKF 59 (214)
Q Consensus 11 ~l~gkpli---~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~ 59 (214)
.++|.|.+ ....+.+++. .+|+|+|+.+..+.+.++++.. +.++++.+
T Consensus 120 ~~~~~~~lg~~~~l~~~~~~~-~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 120 EIDGVPVLGDLDDLPELVREH-DIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp EETTEEEE--GGGHHHHHHHH-T--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred cccCceeEcCHHHHHHHHHhC-CCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 44566665 3345555554 4788888877665444444433 34444444
No 178
>PRK04017 hypothetical protein; Provisional
Probab=39.27 E-value=1.4e+02 Score=21.31 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC--cEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 18 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV--DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 18 i~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
+...++.+.....-..++||=+..+... ++..|. .+..+.| ..- .....-+ +. ...+.+++.|.|.|
T Consensus 9 ~~e~i~~L~e~s~~g~vIVVEGk~D~~~----L~~lGv~~~iI~t~g-~~~-~~~~e~i-a~-~~r~VIILTD~D~~--- 77 (132)
T PRK04017 9 FEEIIEELKEFSEAGAPIIVEGKRDVES----LRKLGVEGEIIKVSR-TPL-AEIAELI-AS-RGKEVIILTDFDRK--- 77 (132)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCccHHHH----HHHcCCCccEEEECC-eec-chHHHHH-Hh-cCCeEEEEECCCcc---
Confidence 3456666766544446777767665333 344443 3333333 221 1111111 11 23467778888875
Q ss_pred HHHHHHHHHH
Q 028081 96 SKDVQKVLMD 105 (214)
Q Consensus 96 ~~~i~~~i~~ 105 (214)
.+-|++-+..
T Consensus 78 GekIr~~l~~ 87 (132)
T PRK04017 78 GEELAKKLSE 87 (132)
T ss_pred hHHHHHHHHH
Confidence 4555555543
No 179
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=38.73 E-value=97 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=9.7
Q ss_pred CeEEEEeCCCchHHHHHHHHhcCCcEEE
Q 028081 32 KEIVVVCDPSYSDIFEETKEKINVDLKF 59 (214)
Q Consensus 32 ~~iiVv~~~~~~~~~~~~~~~~~~~~~~ 59 (214)
+.+++++++.+.....+.++..|.++.+
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v 124 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIV 124 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEE
Confidence 5555555554432222333344444433
No 180
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=38.65 E-value=2.8e+02 Score=24.47 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=56.7
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCC-CchH---HH--------HHHHHhcCCcEEEecCCccHHHHHHHHHhhcc-c-C-
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDP-SYSD---IF--------EETKEKINVDLKFSLPGKERQDSVYSGLQEVD-F-N- 80 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~-~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~-~-~- 80 (214)
.=+..+++.+.+.+..+.-+||+-. .+-. ++ .+.....|..+-++.+.-+.++..+..+..+- . +
T Consensus 203 stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPG 282 (504)
T COG0056 203 STVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPG 282 (504)
T ss_pred HHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCC
Confidence 4567778888777766654444332 2111 11 11222224445566665666666666666552 1 1
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCeEEeeecccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKAT 121 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~~~i~~~~~~~~ 121 (214)
-+. .+||.=++.+..++++.+...+. +..+++.|+..|
T Consensus 283 REA---yPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIET 321 (504)
T COG0056 283 REA---YPGDVFYLHSRLLERAAKLSDELGGGSITALPIIET 321 (504)
T ss_pred ccC---CCCceeehhHHHHHHHHhhccccCCCceEeeeeEEe
Confidence 122 36666677788888887655443 346777887654
No 181
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=1.4e+02 Score=22.39 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.6
Q ss_pred cCeEEEEeCCC
Q 028081 31 VKEIVVVCDPS 41 (214)
Q Consensus 31 ~~~iiVv~~~~ 41 (214)
+|.+++++++.
T Consensus 111 ~D~ivl~SgD~ 121 (181)
T COG1432 111 VDTIVLFSGDG 121 (181)
T ss_pred CCEEEEEcCCc
Confidence 34444444433
No 182
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.08 E-value=2.9e+02 Score=23.29 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=55.6
Q ss_pred ceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCc--cHHHHHHHHHhhcccCCCe
Q 028081 7 KQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK--ERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 7 K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sv~~al~~~~~~~~~ 83 (214)
.+...-+| -.+|...++++..- + |.|++..+.- ......++..|.++..+.-.. -..+.+..++.. +.+.
T Consensus 76 ~~V~~gnGsde~i~~l~~~~~~~-g-d~vl~~~Ptf--~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~---~~~l 148 (356)
T COG0079 76 ENVLVGNGSDELIELLVRAFVEP-G-DTVLIPEPTF--SMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD---KTKL 148 (356)
T ss_pred ceEEEcCChHHHHHHHHHHhhcC-C-CEEEEcCCCh--HHHHHHHHhcCCeEEEecccccccCHHHHHHhhhc---CCCE
Confidence 44444334 56677777777653 2 6676665433 223444555665544433211 223445544433 3678
Q ss_pred EEEEcCCCC---CCCHHHHHHHHHHHHh
Q 028081 84 VCIHDSARP---LVLSKDVQKVLMDALR 108 (214)
Q Consensus 84 vl~~~~d~P---~v~~~~i~~~i~~~~~ 108 (214)
|+++.+.-| +++.+.|+.+++....
T Consensus 149 v~i~nPNNPTG~~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 149 VFLCNPNNPTGTLLPREELRALLEALPE 176 (356)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 888888877 6889999999887654
No 183
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=33.92 E-value=2.9e+02 Score=23.23 Aligned_cols=69 Identities=6% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 19 LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 19 ~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
+-.+-.+.. |+ |.++|+..-.+-....+.++++|.++..++. +.-+...+..++..-. ...+++.++|.
T Consensus 82 E~al~N~le-Pg-d~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~--p~~vfv~hgds 153 (385)
T KOG2862|consen 82 EAALVNLLE-PG-DNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHK--PKAVFVTHGDS 153 (385)
T ss_pred HHHHHhhcC-CC-CeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcC--CceEEEEecCc
Confidence 333444443 42 7777766655545667888899988877653 3334666777776532 56788888876
No 184
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=33.85 E-value=2.3e+02 Score=24.29 Aligned_cols=89 Identities=9% Similarity=0.104 Sum_probs=55.9
Q ss_pred CeehHHHHHHHHhcCCCcCeEEEEeCCCchH-HHHHHHHhcCCcEEEecCCccH-HHHHHHHHhhcc-----cCCCeEEE
Q 028081 14 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSD-IFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVD-----FNSELVCI 86 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~~~-----~~~~~vl~ 86 (214)
|.+++.-+.++- ..-.-.+.+||+++.+.. -++..++..|.++.+..-..-+ ..+++.|++... ...|+++.
T Consensus 192 gqS~~DgI~RaT-n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT 270 (420)
T COG0499 192 GQSLLDGILRAT-NVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVT 270 (420)
T ss_pred chhHHHHHHhhh-ceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEE
Confidence 556666555543 222236888899988752 2455556777776655432222 455555554432 13689999
Q ss_pred EcCCCCCCCHHHHHHHH
Q 028081 87 HDSARPLVLSKDVQKVL 103 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i 103 (214)
..|..--++.+++..|-
T Consensus 271 ~TGnkdVi~~eh~~~Mk 287 (420)
T COG0499 271 ATGNKDVIRKEHFEKMK 287 (420)
T ss_pred ccCCcCccCHHHHHhcc
Confidence 99999999999887763
No 185
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=33.45 E-value=2.3e+02 Score=24.27 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=26.2
Q ss_pred ceeeeeCCeehH---HHHHHHHhcCCCcCeEEEEeCCCc
Q 028081 7 KQYLPLLGQPIA---LYSFYTFSRMVEVKEIVVVCDPSY 42 (214)
Q Consensus 7 K~l~~l~gkpli---~~~i~~~~~~~~~~~iiVv~~~~~ 42 (214)
|.+.-+|-+|=+ .-++.++.+.+.+..++|+|+-..
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~ 43 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHR 43 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccc
Confidence 555666666643 557778888877999999999664
No 186
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=33.26 E-value=1.8e+02 Score=20.66 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=37.2
Q ss_pred cCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 31 VKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 31 ~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++.++||=|.++...++ +++ ..+..+.|.+........=++.....-+.+++.|.|.+ .+-|++-+..+-
T Consensus 9 ~~~vIVVEGK~D~~~l~----~~~~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~---Ge~Irk~l~~~l 79 (127)
T COG1658 9 LKEVIVVEGKDDTASLK----RLGDAGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRK---GERIRKKLKEYL 79 (127)
T ss_pred cCceEEEeCCcHHHHHH----HhcCCceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcc---hHHHHHHHHHHh
Confidence 47899998887644343 333 23444444432212222222221112357888898874 677877776543
No 187
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=33.09 E-value=1.6e+02 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=35.2
Q ss_pred CCCCCCceeeee-CCeehHHHHHHHHhcCC---Cc-CeEEEEeCCCchHHHHHHHHhc
Q 028081 1 MGANMPKQYLPL-LGQPIALYSFYTFSRMV---EV-KEIVVVCDPSYSDIFEETKEKI 53 (214)
Q Consensus 1 m~~~~~K~l~~l-~gkpli~~~i~~~~~~~---~~-~~iiVv~~~~~~~~~~~~~~~~ 53 (214)
||.+.||-+.++ .|+++++..+++++... .. =..+|-|+...-+.+.+..+++
T Consensus 17 LG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~ 74 (300)
T cd00897 17 MGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKY 74 (300)
T ss_pred cCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHc
Confidence 678889999998 78999999999886421 11 1345555544334455555554
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=31.30 E-value=1.5e+02 Score=21.59 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEe
Q 028081 92 PLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 125 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~ 125 (214)
+..+.+.+..+++.+..+|.++++.-+.+.++..
T Consensus 43 ~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVT 76 (146)
T PF08952_consen 43 SSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVT 76 (146)
T ss_dssp HS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEE
T ss_pred CcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEE
Confidence 4568889999999998888888877677766654
No 189
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.85 E-value=2.1e+02 Score=24.56 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=57.1
Q ss_pred eeeeCC-eehHHHHHHHHhcCC--CcCeEEEEeCCC--chHHHHHHHHhcC-CcEEEecCCcc-----HHHHHHHHHhhc
Q 028081 9 YLPLLG-QPIALYSFYTFSRMV--EVKEIVVVCDPS--YSDIFEETKEKIN-VDLKFSLPGKE-----RQDSVYSGLQEV 77 (214)
Q Consensus 9 l~~l~g-kpli~~~i~~~~~~~--~~~~iiVv~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~sv~~al~~~ 77 (214)
+.||-| -|=+.|-+|..-.+. ..+-..++-+++ .++.++.+.++|. ++..+.-||.. ...-..-|.+..
T Consensus 90 ikPl~G~d~nl~~Nlesffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a 169 (431)
T KOG2547|consen 90 IKPLKGVDPNLYHNLESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAA 169 (431)
T ss_pred EeecccCCchhHHhHHHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHh
Confidence 455544 466777787775432 233333433333 3455677777775 33444444432 133334455554
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
. +|.|++.|.+. ++.|++|-++...+..
T Consensus 170 ~--ydlvlisDsgI-~m~pdtildm~t~M~s 197 (431)
T KOG2547|consen 170 K--YDLVLISDSGI-FMKPDTILDMATTMMS 197 (431)
T ss_pred c--CCEEEEecCCe-eecCchHHHHHHhhhc
Confidence 4 78999999888 7788888888877654
No 190
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=29.94 E-value=56 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhc
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSR 27 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~ 27 (214)
||...||-+.++. |+++++.+++.++.
T Consensus 119 lG~~gPKgl~~V~~gks~~dl~~~qIk~ 146 (472)
T COG4284 119 LGCDGPKGLFEVKDGKSLFDLQAEQIKY 146 (472)
T ss_pred cccCCCceeEEecCCCcHHHHHHHHHHH
Confidence 6778899999999 99999999988753
No 191
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.47 E-value=2.4e+02 Score=21.01 Aligned_cols=39 Identities=5% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCcCeEEEEeCCC------chHHHHHHHHhcCCcE
Q 028081 19 LYSFYTFSRMVEVKEIVVVCDPS------YSDIFEETKEKINVDL 57 (214)
Q Consensus 19 ~~~i~~~~~~~~~~~iiVv~~~~------~~~~~~~~~~~~~~~~ 57 (214)
...++.+++....++|+|+++.. .....+.+.+..|.++
T Consensus 65 ~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 65 AEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred HHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 33466666654334677777752 1123344445566554
No 192
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.23 E-value=2.8e+02 Score=21.72 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhcCCcEE-Ee---------cCCccHHHHHHHHHhhcccCCCeEEEE
Q 028081 20 YSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLK-FS---------LPGKERQDSVYSGLQEVDFNSELVCIH 87 (214)
Q Consensus 20 ~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~~~~~~-~~---------~~~~~~~~sv~~al~~~~~~~~~vl~~ 87 (214)
-+++++...+ +.+|.|.|++-.. ...++.....|..+. +. -|..++......|.+....++|.+++-
T Consensus 108 Avv~aL~al~-a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 108 AVVEALNALG-AQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHhhC-cceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE
Confidence 4677777765 7899999987531 112333344443321 11 122234444555655555567876665
Q ss_pred cCCCCCCCHHHHHHHHH
Q 028081 88 DSARPLVLSKDVQKVLM 104 (214)
Q Consensus 88 ~~d~P~v~~~~i~~~i~ 104 (214)
|+. |.+-+.|.++=+
T Consensus 187 -CTn-lRt~eii~~lE~ 201 (238)
T COG3473 187 -CTN-LRTFEIIEKLER 201 (238)
T ss_pred -eec-cccHHHHHHHHH
Confidence 655 888887776643
No 193
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=26.95 E-value=4.3e+02 Score=23.09 Aligned_cols=90 Identities=8% Similarity=0.016 Sum_probs=57.3
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHH----HHhcCCcEE-------EecCCccHHHHHHHHHhhccc---C
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET----KEKINVDLK-------FSLPGKERQDSVYSGLQEVDF---N 80 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~sv~~al~~~~~---~ 80 (214)
-.++++.++++-. | -..-++.+|...-+..+.. ...++ ++. +..+|.++..+.+++++.+-+ +
T Consensus 115 ~~~verll~aiYh-P-qN~ycihvD~~s~~~fk~~~~~L~~cf~-NV~v~~k~~~v~~~G~s~l~a~l~c~~~Ll~~~~~ 191 (439)
T KOG0799|consen 115 YEQVERLLQAIYH-P-QNVYCIHVDAKSPPEFRVAMQQLASCFP-NVIVLPKRESVTYGGHSILAAHLNCLADLLKLSGD 191 (439)
T ss_pred HHHHHHHHHHHhC-C-cCcceEEECCCCCHHHHHHHHHHHhcCC-ceEEeccccceecCCchhhHHHHHHHHHHHhcCCC
Confidence 4466777777653 4 2445566665543333333 33333 232 345778888888888877642 3
Q ss_pred CCeEEEE-cCCCCCCCHHHHHHHHHHHH
Q 028081 81 SELVCIH-DSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 81 ~~~vl~~-~~d~P~v~~~~i~~~i~~~~ 107 (214)
.++++.+ .-|-|+.|...+.+.++.+.
T Consensus 192 W~yfinLs~~D~PlkT~~elv~i~~~L~ 219 (439)
T KOG0799|consen 192 WDYFINLSNSDYPLKTNDELVRIFKILR 219 (439)
T ss_pred CceeeeccCCCcccCCHHHHHHHHHHcC
Confidence 5776665 56999999999999888774
No 194
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=26.69 E-value=1.3e+02 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+|+++|+|.- ++++.+.++++.+.
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~ 24 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALE 24 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHh
Confidence 4789999995 68999999998876
No 195
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.60 E-value=2.9e+02 Score=21.07 Aligned_cols=85 Identities=13% Similarity=-0.030 Sum_probs=47.0
Q ss_pred CCeehHHHHHHHHhcCCCcCeEEE-EeCCCchHHHHHHHHhcCCcEEEecCC--ccH---HHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMVEVKEIVV-VCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~~~iiV-v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~sv~~al~~~~~~~~~vl~ 86 (214)
++-+++.-+++++.+....-+|++ +++.+. ....+.++..|.++...... .++ ...+...++... .|+++
T Consensus 10 g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~--~D~iv- 85 (200)
T PRK05647 10 GNGSNLQAIIDACAAGQLPAEIVAVISDRPD-AYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQ--PDLVV- 85 (200)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEecCcc-chHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhC--cCEEE-
Confidence 457888888888876542234544 455443 33566777788776543211 111 123344454443 56544
Q ss_pred EcCCCCCCCHHHHHH
Q 028081 87 HDSARPLVLSKDVQK 101 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~ 101 (214)
+-+=+.+++++.++.
T Consensus 86 ~~~~~~ii~~~~l~~ 100 (200)
T PRK05647 86 LAGFMRILGPTFVSA 100 (200)
T ss_pred hHHhhhhCCHHHHhh
Confidence 446566777776643
No 196
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=26.36 E-value=1.1e+02 Score=20.40 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=20.8
Q ss_pred eeCCeehHHHHHHHHhcCCCcCeEEEEeC
Q 028081 11 PLLGQPIALYSFYTFSRMVEVKEIVVVCD 39 (214)
Q Consensus 11 ~l~gkpli~~~i~~~~~~~~~~~iiVv~~ 39 (214)
.++|+|+..|.++.+++.+ +.-..|.-+
T Consensus 15 ~~~g~~l~~~ll~~~~~~g-i~GaTV~rg 42 (101)
T PF02641_consen 15 RWGGKPLYEWLLERAREAG-IAGATVFRG 42 (101)
T ss_dssp EETTEEHHHHHHHHHHHTT--SEEEEEE-
T ss_pred ccCceEHHHHHHHHHHHCC-CCeEEEEcc
Confidence 4689999999999999865 666555433
No 197
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.71 E-value=3.4e+02 Score=21.46 Aligned_cols=82 Identities=6% Similarity=-0.012 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhcCCcEEEec--CC-------ccHHHHHHHHHhhcc-cCCCeEEE
Q 028081 19 LYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSL--PG-------KERQDSVYSGLQEVD-FNSELVCI 86 (214)
Q Consensus 19 ~~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~~~~~~~~~--~~-------~~~~~sv~~al~~~~-~~~~~vl~ 86 (214)
.-+++++++. ++.+|.|+|++... +.+.+.....|..+.-.. |- .-.-+++..++..+. .+.|.|++
T Consensus 109 ~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 109 SAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 4466777777 48999999998741 223344444554432111 10 011345555554442 24576655
Q ss_pred EcCCCCCCCHHHHHHHH
Q 028081 87 HDSARPLVLSKDVQKVL 103 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i 103 (214)
. |+. |.+.+.|+.+=
T Consensus 188 s-CTn-Lrt~~vi~~lE 202 (239)
T TIGR02990 188 S-CTA-LRAATCAQRIE 202 (239)
T ss_pred e-CCC-chhHHHHHHHH
Confidence 5 444 55666555543
No 198
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=25.70 E-value=3e+02 Score=20.85 Aligned_cols=85 Identities=7% Similarity=-0.040 Sum_probs=46.4
Q ss_pred CCeehHHHHHHHHhcCCCcCeEEE-EeCCCchHHHHHHHHhcCCcEEEecCC--ccH---HHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMVEVKEIVV-VCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~~~iiV-v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~sv~~al~~~~~~~~~vl~ 86 (214)
++-+++.-+++++.+...--+|.+ +++..+ ....+.+++.|.++....-. .++ ...+...++... .|+++
T Consensus 9 g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~--~D~iv- 84 (190)
T TIGR00639 9 GNGSNLQAIIDACKEGKIPASVVLVISNKPD-AYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHE--VDLVV- 84 (190)
T ss_pred CCChhHHHHHHHHHcCCCCceEEEEEECCcc-chHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcC--CCEEE-
Confidence 557888888888876432234554 455443 23456677777766543210 011 223444455443 57544
Q ss_pred EcCCCCCCCHHHHHH
Q 028081 87 HDSARPLVLSKDVQK 101 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~ 101 (214)
+-+=+.+++++.++.
T Consensus 85 ~~~~~~il~~~~l~~ 99 (190)
T TIGR00639 85 LAGFMRILGPTFLSR 99 (190)
T ss_pred EeCcchhCCHHHHhh
Confidence 446666777776654
No 199
>PLN02285 methionyl-tRNA formyltransferase
Probab=25.56 E-value=4e+02 Score=22.24 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=46.1
Q ss_pred CCCCCceeeeeCCeehHHHHHHHHhcC-----CCcCeEEEEeCCCchH---------HHHHHHHhcCCcEEEecCC-ccH
Q 028081 2 GANMPKQYLPLLGQPIALYSFYTFSRM-----VEVKEIVVVCDPSYSD---------IFEETKEKINVDLKFSLPG-KER 66 (214)
Q Consensus 2 ~~~~~K~l~~l~gkpli~~~i~~~~~~-----~~~~~iiVv~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~ 66 (214)
|++.+.-.+-+|-..+=..+++++... ..++-+.|+|.++.-. -+++.+...+.+...+... ...
T Consensus 2 ~~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~ 81 (334)
T PLN02285 2 GSGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAG 81 (334)
T ss_pred CCCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccC
Confidence 455443344344444446777777653 1355566677765310 1566777777663222111 111
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHH
Q 028081 67 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQ 100 (214)
Q Consensus 67 ~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~ 100 (214)
...+...++... .|++++. +=+-+++++.++
T Consensus 82 ~~~~~~~l~~~~--~Dliv~~-~~~~ilp~~~l~ 112 (334)
T PLN02285 82 EEDFLSALRELQ--PDLCITA-AYGNILPQKFLD 112 (334)
T ss_pred CHHHHHHHHhhC--CCEEEhh-HhhhhcCHHHHh
Confidence 122334444443 4654433 444566666655
No 200
>PRK05967 cystathionine beta-lyase; Provisional
Probab=25.31 E-value=4.4e+02 Score=22.61 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCeehHHHHHHHHhcCCCcCeEEEEeCCCchH---HHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcC
Q 028081 13 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 89 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~ 89 (214)
.|..-+..++.++.+.+ |+|++. ++..-. .+.+.++.+|..+.++.... .+.+..++ .++...|++-..
T Consensus 87 SG~aAi~~~l~all~~G--D~Vlv~-~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~--~e~l~~al---~~~TklV~lesP 158 (395)
T PRK05967 87 SGLAAVTVPFLGFLSPG--DHALIV-DSVYYPTRHFCDTMLKRLGVEVEYYDPEI--GAGIAKLM---RPNTKVVHTEAP 158 (395)
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEc-cCCcHHHHHHHHHHHHhcCeEEEEeCCCC--HHHHHHhc---CcCceEEEEECC
Confidence 35555556666665433 666654 333211 12345567777777664321 23344444 223566777768
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeE
Q 028081 90 ARPLVLSKDVQKVLMDALRVGAAV 113 (214)
Q Consensus 90 d~P~v~~~~i~~~i~~~~~~~~~i 113 (214)
..|..+...|+.+.+...+++..+
T Consensus 159 sNP~l~v~dl~~I~~la~~~g~~v 182 (395)
T PRK05967 159 GSNTFEMQDIPAIAEAAHRHGAIV 182 (395)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCEE
Confidence 899999999999998887766533
No 201
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=25.13 E-value=1.1e+02 Score=20.74 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=30.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLK 58 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~ 58 (214)
+.||+++.=.-+.=+--+++++.+.+ .++.-=-...-++.+.+....+|..+.
T Consensus 52 ~~pkn~lnk~~R~QiK~TieaA~q~g--kka~f~F~~~v~~kv~eY~e~~G~~Vi 104 (109)
T PF15647_consen 52 DKPKNFLNKKTRNQIKATIEAAEQQG--KKAYFWFKGEVHDKVKEYIERYGGKVI 104 (109)
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHhC--CeEEEEecccccHHHHHHHHHcCcEEE
Confidence 35677766666666777777777654 333332222223456666667765443
No 202
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.94 E-value=3e+02 Score=20.66 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=24.6
Q ss_pred eEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 33 EIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 33 ~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
.++|+.+..+ ..++..++.++.+..+ ........++..|++...-+.+-|++. ||+
T Consensus 64 ~v~vvSNn~e-~RV~~~~~~l~v~fi~-~A~KP~~~~fr~Al~~m~l~~~~vvmV-GDq 119 (175)
T COG2179 64 KVVVVSNNKE-SRVARAAEKLGVPFIY-RAKKPFGRAFRRALKEMNLPPEEVVMV-GDQ 119 (175)
T ss_pred EEEEEeCCCH-HHHHhhhhhcCCceee-cccCccHHHHHHHHHHcCCChhHEEEE-cch
Confidence 4445544332 4455555555543221 112233445666666554222333332 555
No 203
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=24.68 E-value=3.3e+02 Score=21.00 Aligned_cols=29 Identities=3% Similarity=-0.023 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+.++++++.-|.=+++...+..+++.++.
T Consensus 54 ~~~ylvflHqDv~i~~~~~l~~il~~~~~ 82 (217)
T PF13712_consen 54 KAKYLVFLHQDVFIINENWLEDILEIFEE 82 (217)
T ss_dssp -SSEEEEEETTEE-SSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCeEEcchhHHHHHHHHHhh
Confidence 36788888888889999999999998843
No 204
>PRK09028 cystathionine beta-lyase; Provisional
Probab=24.57 E-value=4.5e+02 Score=22.49 Aligned_cols=91 Identities=10% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCeehHHHHHHHHhcCCCcCeEEEEeCCCchH---HHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcC
Q 028081 13 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 89 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~ 89 (214)
+|..=|..++.++.+.+ |+|++.. +.... .+......+|..+.++.... .+.+..++ .++...|++-..
T Consensus 84 sG~~Ai~~~l~all~~G--D~Vvv~~-~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~--~e~l~~~l---~~~TklV~lesp 155 (394)
T PRK09028 84 SGAAAISNALLSFLKAG--DHLLMVD-SCYEPTRDLCDKILKGFGIETTYYDPMI--GEGIRELI---RPNTKVLFLESP 155 (394)
T ss_pred CHHHHHHHHHHHHhCCC--CEEEEEC-CCcHHHHHHHHHhhhhcceEEEEECCCC--HHHHHHhc---CcCceEEEEECC
Confidence 34444555555554432 5655543 33211 12223344565555543221 23343333 234567888889
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028081 90 ARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 90 d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
..|......++++.+..++++.
T Consensus 156 sNPtg~v~dl~~I~~la~~~g~ 177 (394)
T PRK09028 156 GSITMEVQDVPTLSRIAHEHDI 177 (394)
T ss_pred CCCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999999988776654
No 205
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=23.92 E-value=4.5e+02 Score=22.26 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred eeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchH---HHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEE
Q 028081 9 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 9 l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+.--+|..-|..++.++...+ |+|++.. ..... .+...+..++..+.++... ..+.+..++ .++...|+
T Consensus 80 i~~~sG~~Ai~~~l~all~~G--d~Vl~~~-~~y~~t~~~~~~~~~~~gi~~~~~d~~--d~e~l~~~i---~~~tklV~ 151 (388)
T PRK07811 80 RAFSSGMAATDCLLRAVLRPG--DHIVIPN-DAYGGTFRLIDKVFTRWGVEYTPVDLS--DLDAVRAAI---TPRTKLIW 151 (388)
T ss_pred EEeCCHHHHHHHHHHHHhCCC--CEEEEcC-CCchHHHHHHHHhCcCCCeEEEEeCCC--CHHHHHHhc---CcCCeEEE
Confidence 333456666667777665432 6665543 32211 1122222345444444321 234444443 22356777
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+-.+..|..+...++++.+..++++.
T Consensus 152 ie~p~NPtg~~~dl~~I~~la~~~gi 177 (388)
T PRK07811 152 VETPTNPLLSITDIAALAELAHDAGA 177 (388)
T ss_pred EECCCCCcceecCHHHHHHHHHHcCC
Confidence 77888898888888888877766554
No 206
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=23.81 E-value=4.4e+02 Score=22.11 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=25.7
Q ss_pred ceeeeeCCee---hHHHHHHHHhcCCCcCeEEEEeCCCc
Q 028081 7 KQYLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSY 42 (214)
Q Consensus 7 K~l~~l~gkp---li~~~i~~~~~~~~~~~iiVv~~~~~ 42 (214)
|.+.-+|.+| .+.-++.++++.+.++-++|+|+...
T Consensus 2 ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~ 40 (365)
T TIGR03568 2 KICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHL 40 (365)
T ss_pred eEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Confidence 4445556666 45677888887667899999998653
No 207
>PF06871 TraH_2: TraH_2; InterPro: IPR010680 This family consists of several TraH proteins, which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to IPR010927 from INTERPRO.
Probab=23.73 E-value=84 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
|..||.+|.-|-+.|.+++.++.+.-.
T Consensus 3 DAAlI~qCADPsLkPAIVEqFi~aaGS 29 (206)
T PF06871_consen 3 DAALIKQCADPSLKPAIVEQFIAAAGS 29 (206)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhCC
Confidence 456888999999999999999987644
No 208
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=2e+02 Score=25.00 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred CcCeEEEEeCCCchHHHHHHHHhc
Q 028081 30 EVKEIVVVCDPSYSDIFEETKEKI 53 (214)
Q Consensus 30 ~~~~iiVv~~~~~~~~~~~~~~~~ 53 (214)
.+++|++|.++..|..++.+++.|
T Consensus 362 dideiVLVGGsTrIPKvQqllk~f 385 (663)
T KOG0100|consen 362 DIDEIVLVGGSTRIPKVQQLLKDF 385 (663)
T ss_pred cCceEEEecCcccChhHHHHHHHH
Confidence 489999999999888888888876
No 209
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=23.25 E-value=2.3e+02 Score=18.67 Aligned_cols=35 Identities=9% Similarity=0.216 Sum_probs=26.7
Q ss_pred eeeeCCeehHHHHHHHHhcCC-CcCeEEEEeCCCch
Q 028081 9 YLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYS 43 (214)
Q Consensus 9 l~~l~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~ 43 (214)
..-+|.||+..|++..+.... +.++|++-..-..+
T Consensus 3 ~i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aI 38 (87)
T TIGR00285 3 VVYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAI 38 (87)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchh
Confidence 456899999999999987532 37899887765544
No 210
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=23.09 E-value=4.8e+02 Score=22.36 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=53.6
Q ss_pred hHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCCCeEEEEcCCCCC
Q 028081 17 IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNSELVCIHDSARPL 93 (214)
Q Consensus 17 li~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~ 93 (214)
-++-++..+.. + =|+|+|+.+-.-=+.+.+.++.+|.++..+.- ..-..+.+..+|+.-. +.+.|.+..++.+-
T Consensus 68 amEAav~sl~~-p-gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~-~~~~V~~vH~ETST 144 (383)
T COG0075 68 AMEAAVASLVE-P-GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP-DIKAVAVVHNETST 144 (383)
T ss_pred HHHHHHHhccC-C-CCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC-CccEEEEEeccCcc
Confidence 34445555543 2 26777776544335678888899877655432 1123677888877322 35667776676654
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 028081 94 VLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 94 v~~~~i~~~i~~~~~~~~ 111 (214)
=--+.++.+.+..++++.
T Consensus 145 Gvlnpl~~I~~~~k~~g~ 162 (383)
T COG0075 145 GVLNPLKEIAKAAKEHGA 162 (383)
T ss_pred cccCcHHHHHHHHHHcCC
Confidence 333455666655666654
No 211
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.78 E-value=1.2e+02 Score=18.35 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=21.6
Q ss_pred CeehHHHHHHHHhcCCCcCeEEEEeCCCc
Q 028081 14 GQPIALYSFYTFSRMVEVKEIVVVCDPSY 42 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~~iiVv~~~~~ 42 (214)
|+-|+.++.+.+++. .+..+.+.+..+.
T Consensus 43 g~~L~~~~~~~~~~~-g~~~i~~~~~~~n 70 (83)
T PF00583_consen 43 GSKLLQAAEEWARKR-GIKRIYLDVSPDN 70 (83)
T ss_dssp HHHHHHHHHHHHHHT-TESEEEEEEETTG
T ss_pred chhhhhhhhhhHHhc-CccEEEEEEeCCC
Confidence 567888888888874 4788888877665
No 212
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=22.56 E-value=3.3e+02 Score=22.50 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=41.3
Q ss_pred hHHHHHHHHhc----CCCc-CeEEEEeCCCchHHHHHHHH----hcCC-cEEEecCCcc--HHHHHHHHHhhcccCCCeE
Q 028081 17 IALYSFYTFSR----MVEV-KEIVVVCDPSYSDIFEETKE----KINV-DLKFSLPGKE--RQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 17 li~~~i~~~~~----~~~~-~~iiVv~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~--~~~sv~~al~~~~~~~~~v 84 (214)
|+.-+++-+.+ .+.+ .+|+|| ++..++...+++- +++. .+.+..-... ..++++.|+-... .+.+
T Consensus 85 mldeav~~le~ry~~~~~F~~eiiVv-ddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~r--G~~i 161 (323)
T KOG2977|consen 85 MLDEAVDYLEKRYLSDKSFTYEIIVV-DDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSR--GQKI 161 (323)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEe-CCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhcc--CceE
Confidence 45555555432 2334 356655 4444454444443 4442 3443321111 1344666665543 5677
Q ss_pred EEEcCCCCC--CCHHHHHHHHH
Q 028081 85 CIHDSARPL--VLSKDVQKVLM 104 (214)
Q Consensus 85 l~~~~d~P~--v~~~~i~~~i~ 104 (214)
++.|+|-|- -+-+-+.+.+.
T Consensus 162 lfadAdGaTkf~d~ekLe~al~ 183 (323)
T KOG2977|consen 162 LFADADGATKFADLEKLEKALN 183 (323)
T ss_pred EEEcCCCCccCCCHHHHHHHHH
Confidence 888777764 44455555444
No 213
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=22.18 E-value=4.2e+02 Score=21.33 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCCCcCeEEEEeCCC-chHHHHHHHHhcCCcEEEecCCccHHHHHHHHHh
Q 028081 17 IALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQ 75 (214)
Q Consensus 17 li~~~i~~~~~~~~~~~iiVv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~ 75 (214)
.+...++.+.+.+ ++-.+..|... +-..+...+...+.+..++.||++..+.+.+++.
T Consensus 15 ~~~~~~~~l~~~g-~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~ 73 (293)
T TIGR03702 15 DVREAVGDLRDEG-IQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALA 73 (293)
T ss_pred HHHHHHHHHHHCC-CeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHH
Confidence 5666677666653 55333344432 2222222222233356677888888888888884
No 214
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=21.96 E-value=4.1e+02 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec
Q 028081 22 FYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 61 (214)
Q Consensus 22 i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~ 61 (214)
+...++.+ .+|..+|.++. -.+.++...|+++.++.
T Consensus 8 l~~~k~~g--~ki~~lTaYD~--~~A~~~d~agvD~iLVG 43 (261)
T PF02548_consen 8 LRKMKQKG--EKIVMLTAYDY--PSARIADEAGVDIILVG 43 (261)
T ss_dssp HHHHHHHT----EEEEE--SH--HHHHHHHHTT-SEEEE-
T ss_pred HHHHHhCC--CcEEEEecccH--HHHHHHHHcCCCEEEeC
Confidence 34444433 67888888875 35677777787776653
No 215
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=21.62 E-value=2.5e+02 Score=18.50 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=28.9
Q ss_pred CceeeeeCCeehHHHHHHHHhcCC-CcCeEEEEeCCCch
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYS 43 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~ 43 (214)
+++..-+|.||...|++..+-... +.++|++-.....|
T Consensus 3 ~envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraI 41 (91)
T COG1581 3 EENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAI 41 (91)
T ss_pred CccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhh
Confidence 468888999999999998875432 37899887665544
No 216
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.58 E-value=5.3e+02 Score=22.24 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCcCeEEEEeCC-Cc-hHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 18 ALYSFYTFSRMVEVKEIVVVCDP-SY-SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 18 i~~~i~~~~~~~~~~~iiVv~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
|.-++-.+.+.+ |+|++.-+- .. ...+....+++|+.+.++..+. ...+..++.. ++.+.|++=.+..|++.
T Consensus 91 I~~~~l~ll~~G--D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~--~~~~~~~~~~--~~tk~v~lEtPsNP~l~ 164 (396)
T COG0626 91 ISTALLALLKAG--DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGD--DEALEAAIKE--PNTKLVFLETPSNPLLE 164 (396)
T ss_pred HHHHHHHhcCCC--CEEEecCCccchHHHHHHHHHHhcCeEEEEECCCC--hHHHHHHhcc--cCceEEEEeCCCCcccc
Confidence 444455555543 666665431 11 1234555667887777665543 2223333321 24678888899999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 028081 96 SKDVQKVLMDALRVGA 111 (214)
Q Consensus 96 ~~~i~~~i~~~~~~~~ 111 (214)
-.+|..+.+.....++
T Consensus 165 v~DI~~i~~~A~~~g~ 180 (396)
T COG0626 165 VPDIPAIARLAKAYGA 180 (396)
T ss_pred cccHHHHHHHHHhcCC
Confidence 9999999988776663
No 217
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.39 E-value=4.6e+02 Score=21.44 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=35.4
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCC-chHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcc
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~ 78 (214)
+-.+..+.+.+++.. .+-.+.++... +...+.+.+...+.+..++.||++..+.+.+|+....
T Consensus 19 ~~~~~~~~~~l~~~g-~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~ 82 (301)
T COG1597 19 KKLLREVEELLEEAG-HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTD 82 (301)
T ss_pred hhHHHHHHHHHHhcC-CeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCC
Confidence 345556666666664 44444444443 2222222222224456677888888888888886554
No 218
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=20.98 E-value=1.4e+02 Score=19.25 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 179 KHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 179 g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+..+.+...+..++.|++-.||..|-.+.+..
T Consensus 40 ~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~ 71 (82)
T cd06407 40 AFDLKYLDDDEEWVLLTCDADLEECIDVYRSS 71 (82)
T ss_pred eeEEEEECCCCCeEEeecHHHHHHHHHHHHHC
Confidence 35667777778999999999999998887653
No 219
>PLN03013 cysteine synthase
Probab=20.69 E-value=3.7e+02 Score=23.46 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=30.3
Q ss_pred EEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 34 IVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 34 iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
.+|++++..-..-.+.++.+|.++..+.+..+..+++..+.+...+..+++++.+-+.|...
T Consensus 201 ~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~ 262 (429)
T PLN03013 201 LILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANP 262 (429)
T ss_pred EEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHH
Confidence 34444433223334556678877776654322223344443333322356666666666543
No 220
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=20.62 E-value=2.2e+02 Score=24.11 Aligned_cols=52 Identities=8% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchH-----HHHHHHHhcCCcE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD-----IFEETKEKINVDL 57 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~-----~~~~~~~~~~~~~ 57 (214)
+.+.++..+.++|+.. +.+++.+++ +.+|++.++.+.-. ...+..+..|..+
T Consensus 42 gi~g~~i~~s~~p~~~-cad~ii~~g-i~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V 98 (360)
T PRK14719 42 KINANFITVSNTPVFQ-IADDLIAEN-ISEVILLTDFDRAGRVYAKNIMEEFQSRGIKV 98 (360)
T ss_pred CCCCcEEEEeCCchHH-HHHHHHHcC-CCEEEEEECCCCCCCccchHHHHHHHHCCCEE
Confidence 4566788888988776 888888775 89999999433211 1234556667655
No 221
>PLN02366 spermidine synthase
Probab=20.41 E-value=4.9e+02 Score=21.43 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=17.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEe
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC 38 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~ 38 (214)
..||..+.+||-.-. ++..+.+.+.+.+|.+|=
T Consensus 90 ~~pkrVLiIGgG~G~--~~rellk~~~v~~V~~VE 122 (308)
T PLN02366 90 PNPKKVLVVGGGDGG--VLREIARHSSVEQIDICE 122 (308)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhCCCCCeEEEEE
Confidence 357888888765311 223333344456666553
No 222
>PHA00673 acetyltransferase domain containing protein
Probab=20.34 E-value=93 Score=22.86 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=23.2
Q ss_pred CeehHHHHHHHHhcCCCcCeEEEEeCCCc
Q 028081 14 GQPIALYSFYTFSRMVEVKEIVVVCDPSY 42 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~~iiVv~~~~~ 42 (214)
|+-|+.|+.+.+++.+ +..++|+..+..
T Consensus 103 G~~Ll~~A~~~Ar~~G-c~~lyis~~p~~ 130 (154)
T PHA00673 103 GMALLRATEALARDLG-ATGLYVSGPTEG 130 (154)
T ss_pred HHHHHHHHHHHHHHCC-CCEEEEecCCCc
Confidence 6789999999999885 799999877653
Done!