Query 028081
Match_columns 214
No_of_seqs 224 out of 1303
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q80_A 2-C-methyl-D-erythritol 100.0 4E-43 1.4E-47 274.6 21.9 205 1-208 21-230 (231)
2 3f1c_A Putative 2-C-methyl-D-e 100.0 9.1E-39 3.1E-43 252.6 19.1 213 1-213 17-238 (246)
3 2yc3_A 2-C-methyl-D-erythritol 100.0 6.6E-34 2.2E-38 222.0 18.7 210 1-210 18-227 (228)
4 1vpa_A 2-C-methyl-D-erythritol 100.0 1.4E-32 4.9E-37 215.2 16.5 205 1-212 27-232 (234)
5 1i52_A 4-diphosphocytidyl-2-C- 100.0 2.7E-31 9.3E-36 208.3 19.7 209 1-212 21-232 (236)
6 2vsh_A TARI, 2-C-methyl-D-eryt 100.0 3E-30 1E-34 202.0 18.0 204 4-208 20-234 (236)
7 2xwl_A 2-C-methyl-D-erythritol 100.0 6.6E-30 2.3E-34 198.5 19.5 205 1-210 16-221 (223)
8 1vgw_A 4-diphosphocytidyl-2C-m 100.0 9.6E-30 3.3E-34 198.7 19.8 203 1-208 20-229 (231)
9 2px7_A 2-C-methyl-D-erythritol 100.0 1.8E-28 6.1E-33 192.5 18.4 197 1-211 39-235 (236)
10 1w55_A ISPD/ISPF bifunctional 100.0 4E-28 1.4E-32 201.2 11.7 189 1-208 17-205 (371)
11 4fcu_A 3-deoxy-manno-octuloson 99.9 2.8E-25 9.6E-30 175.7 13.8 201 6-211 17-252 (253)
12 3k8d_A 3-deoxy-manno-octuloson 99.9 7.5E-25 2.6E-29 174.2 15.0 200 4-208 31-264 (264)
13 1h7e_A 3-deoxy-manno-octuloson 99.9 1.5E-24 5.1E-29 170.7 15.9 200 6-211 18-241 (245)
14 1ezi_A CMP-N-acetylneuraminic 99.9 2.4E-25 8E-30 173.6 8.0 192 6-209 20-225 (228)
15 3tqd_A 3-deoxy-manno-octuloson 99.9 8E-24 2.8E-28 167.5 14.4 197 6-207 25-256 (256)
16 4fce_A Bifunctional protein GL 99.9 2E-23 6.9E-28 178.1 16.7 206 1-210 22-245 (459)
17 3oam_A 3-deoxy-manno-octuloson 99.9 7.2E-23 2.5E-27 162.0 15.2 202 5-211 16-251 (252)
18 2v0h_A Bifunctional protein GL 99.9 8.3E-22 2.8E-26 168.0 17.8 206 1-210 19-242 (456)
19 2waw_A MOBA relate protein; un 99.9 7.7E-22 2.6E-26 150.2 15.2 174 5-208 21-196 (199)
20 1hm9_A GLMU, UDP-N-acetylgluco 99.9 1.6E-21 5.5E-26 166.8 18.1 205 1-210 25-251 (468)
21 1vic_A 3-deoxy-manno-octuloson 99.9 9E-21 3.1E-25 150.7 16.7 199 6-211 18-255 (262)
22 2y6p_A 3-deoxy-manno-octuloson 99.9 7.6E-21 2.6E-25 148.4 15.8 194 6-208 18-232 (234)
23 2wee_A MOBA-related protein; u 99.9 1.4E-20 4.8E-25 143.0 14.3 174 4-207 20-195 (197)
24 1qwj_A Cytidine monophospho-N- 99.8 1.3E-20 4.6E-25 146.8 13.5 190 7-212 20-225 (229)
25 3rsb_A Adenosylcobinamide-phos 99.8 2.8E-22 9.7E-27 152.6 1.1 111 5-120 17-138 (196)
26 3d5n_A Q97W15_sulso; NESG, SSR 99.8 5.9E-20 2E-24 140.1 10.0 169 5-208 18-189 (197)
27 1lvw_A Glucose-1-phosphate thy 99.8 7.8E-19 2.7E-23 141.8 16.1 198 4-208 23-241 (295)
28 4ecm_A Glucose-1-phosphate thy 99.8 1.3E-18 4.5E-23 138.7 14.6 200 4-211 44-261 (269)
29 3ngw_A Molybdopterin-guanine d 99.8 6E-18 2.1E-22 129.9 17.4 170 5-212 16-197 (208)
30 1fxo_A Glucose-1-phosphate thy 99.8 1.2E-18 4E-23 140.7 13.4 197 5-208 23-240 (293)
31 3st8_A Bifunctional protein GL 99.8 1.2E-16 4E-21 137.9 20.7 208 1-210 26-260 (501)
32 3juk_A UDP-glucose pyrophospho 99.7 8.9E-18 3.1E-22 134.6 11.6 199 4-209 22-270 (281)
33 1mc3_A Glucose-1-phosphate thy 99.7 5.1E-18 1.8E-22 137.0 9.4 199 4-209 23-242 (296)
34 1e5k_A Molybdopterin-guanine d 99.7 5E-17 1.7E-21 124.2 13.4 92 5-105 23-116 (201)
35 3pnn_A Conserved domain protei 99.7 5.1E-17 1.7E-21 131.7 14.1 199 6-210 22-292 (303)
36 2pa4_A UTP-glucose-1-phosphate 99.7 3.5E-17 1.2E-21 133.8 13.1 201 4-208 32-281 (323)
37 2dpw_A Hypothetical protein TT 99.7 9.5E-17 3.2E-21 125.2 14.2 98 5-117 22-120 (232)
38 4evw_A Nucleoside-diphosphate- 99.7 5.3E-16 1.8E-20 122.7 14.5 201 3-207 18-245 (255)
39 2ggo_A 401AA long hypothetical 99.7 3.7E-17 1.3E-21 137.1 7.9 191 4-210 20-225 (401)
40 2ux8_A Glucose-1-phosphate uri 99.7 3.5E-16 1.2E-20 126.3 12.5 198 4-208 34-278 (297)
41 1jyk_A LICC protein, CTP:phosp 99.7 1.9E-16 6.5E-21 125.2 10.3 195 3-210 44-253 (254)
42 2e8b_A Probable molybdopterin- 99.7 2.1E-16 7.3E-21 120.6 9.7 89 5-103 30-120 (201)
43 2e3d_A UTP--glucose-1-phosphat 99.6 1.6E-15 5.6E-20 122.6 12.8 197 4-206 28-278 (302)
44 1tzf_A Glucose-1-phosphate cyt 99.6 5.7E-15 2E-19 116.6 13.6 196 4-210 22-251 (259)
45 2qh5_A PMI, ALGA, mannose-6-ph 99.6 1.4E-14 4.9E-19 117.5 15.2 201 4-207 25-282 (308)
46 3brk_X Glucose-1-phosphate ade 99.6 1.7E-14 5.7E-19 121.8 13.1 202 3-209 31-285 (420)
47 2xme_A CTP-inositol-1-phosphat 99.6 3.9E-15 1.3E-19 115.9 8.1 91 6-104 36-130 (232)
48 1yp2_A Glucose-1-phosphate ade 99.5 8.2E-13 2.8E-17 112.4 17.3 204 3-210 39-297 (451)
49 2x65_A Mannose-1-phosphate gua 99.5 4.4E-13 1.5E-17 109.9 13.1 200 3-203 21-270 (336)
50 2cu2_A Putative mannose-1-phos 99.4 6.1E-13 2.1E-17 109.1 7.1 198 4-204 23-266 (337)
51 2i5e_A Hypothetical protein MM 99.3 2.5E-11 8.5E-16 93.1 11.9 81 12-104 30-111 (211)
52 3cgx_A Putative nucleotide-dip 98.9 4.7E-08 1.6E-12 76.3 15.3 100 15-120 37-140 (242)
53 2i5k_A UTP--glucose-1-phosphat 98.0 5.4E-05 1.9E-09 64.6 11.2 118 1-121 106-266 (488)
54 2icy_A Probable UTP-glucose-1- 97.1 0.0044 1.5E-07 52.6 11.2 57 1-58 93-158 (469)
55 1jv1_A Glcnac1P uridyltransfer 97.1 0.0035 1.2E-07 53.7 10.2 51 1-52 116-180 (505)
56 3oc9_A UDP-N-acetylglucosamine 96.3 0.051 1.8E-06 45.1 11.5 117 1-120 49-218 (405)
57 2oeg_A UTP-glucose-1-phosphate 95.8 0.037 1.3E-06 47.4 8.6 50 1-51 89-144 (505)
58 2yqc_A UDP-N-acetylglucosamine 95.7 0.076 2.6E-06 45.3 9.9 51 1-52 117-183 (486)
59 1qg8_A Protein (spore coat pol 95.3 0.22 7.4E-06 37.9 10.7 94 12-109 10-116 (255)
60 3bcv_A Putative glycosyltransf 94.9 0.21 7.3E-06 37.5 9.6 95 12-110 14-113 (240)
61 3ckj_A Putative uncharacterize 94.6 0.26 9E-06 39.5 9.9 94 12-108 57-159 (329)
62 3f1y_A Mannosyl-3-phosphoglyce 93.8 0.43 1.5E-05 39.4 9.6 95 12-109 103-208 (387)
63 1xhb_A Polypeptide N-acetylgal 92.6 0.52 1.8E-05 39.6 8.5 96 13-111 39-144 (472)
64 4fix_A UDP-galactofuranosyl tr 92.0 0.49 1.7E-05 41.9 7.9 97 12-109 189-296 (657)
65 4hg6_A Cellulose synthase subu 91.4 1.8 6E-05 39.2 11.0 98 9-109 145-266 (802)
66 2ffu_A Ppgalnact-2, polypeptid 90.8 1.4 4.8E-05 37.3 9.4 99 9-111 71-176 (501)
67 2bo4_A Mannosylglycerate synth 87.7 9.3 0.00032 31.5 11.8 43 64-108 74-120 (397)
68 2d7i_A Polypeptide N-acetylgal 87.2 1.7 5.8E-05 37.6 7.4 98 10-111 118-226 (570)
69 2z86_A Chondroitin synthase; G 86.8 3 0.0001 36.2 8.8 95 13-111 103-204 (625)
70 2z86_A Chondroitin synthase; G 85.2 5 0.00017 34.8 9.4 94 12-109 384-482 (625)
71 1omz_A Alpha-1,4-N-acetylhexos 78.5 2.4 8.2E-05 33.5 4.3 94 14-110 39-135 (293)
72 1fo8_A Alpha-1,3-mannosyl-glyc 76.9 14 0.00047 29.8 8.5 98 8-107 6-125 (343)
73 2zu9_A Mannosyl-3-phosphoglyce 69.0 47 0.0016 27.3 10.9 40 66-107 145-185 (394)
74 2qip_A Protein of unknown func 54.0 21 0.00071 25.2 4.8 40 21-60 99-139 (165)
75 3l7i_A Teichoic acid biosynthe 51.2 3.2 0.00011 37.0 0.0 93 12-108 11-110 (729)
76 3r3i_A UTP--glucose-1-phosphat 48.6 16 0.00053 31.4 3.8 52 1-52 141-197 (528)
77 3ogz_A UDP-sugar pyrophosphory 43.7 13 0.00043 32.6 2.6 54 1-54 128-185 (630)
78 3mmz_A Putative HAD family hyd 38.1 99 0.0034 21.5 7.2 65 21-92 47-112 (176)
79 3gue_A UTP-glucose-1-phosphate 37.8 57 0.002 27.6 5.6 52 1-52 90-146 (484)
80 2ywr_A Phosphoribosylglycinami 31.4 1.6E+02 0.0053 21.7 9.1 84 13-101 10-100 (216)
81 1t6t_1 Putative protein; struc 31.4 44 0.0015 22.4 3.2 66 18-92 8-74 (118)
82 2gak_A Beta-1,6-N-acetylglucos 30.5 2.2E+02 0.0074 23.1 8.7 88 16-106 97-199 (391)
83 3auf_A Glycinamide ribonucleot 30.2 1.7E+02 0.0058 21.8 10.7 85 13-101 31-121 (229)
84 7aat_A Aspartate aminotransfer 26.9 2.3E+02 0.0079 22.2 8.8 100 11-113 102-211 (401)
85 2l69_A Rossmann 2X3 fold prote 25.6 72 0.0025 20.3 3.2 61 44-111 16-76 (134)
86 3kcq_A Phosphoribosylglycinami 23.7 2.2E+02 0.0076 21.0 8.5 85 13-101 17-102 (215)
87 1j2j_B ADP-ribosylation factor 22.2 55 0.0019 17.8 1.9 18 193-210 18-35 (45)
88 3gbc_A Pyrazinamidase/nicotina 22.1 2E+02 0.0067 20.4 5.6 67 46-113 116-182 (186)
89 2r8e_A 3-deoxy-D-manno-octulos 21.2 2.1E+02 0.0073 19.8 7.3 66 21-92 61-127 (188)
90 3elf_A Fructose-bisphosphate a 20.9 99 0.0034 24.9 4.0 29 91-119 1-29 (349)
91 1o51_A Hypothetical protein TM 20.1 70 0.0024 21.1 2.5 25 11-36 25-49 (114)
No 1
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=100.00 E-value=4e-43 Score=274.60 Aligned_cols=205 Identities=28% Similarity=0.350 Sum_probs=180.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||.|+++++.+++.+++|+||+++++++.+++.+.. .+.++.||.++++|+++|+.++...
T Consensus 21 mg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---~v~~v~gg~~r~~sv~~gl~~~~~~ 97 (231)
T 3q80_A 21 LAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---RAMIVAGGSNRTDTVNLALTVLSGT 97 (231)
T ss_dssp TCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---GCEEEECCSSHHHHHHHHHGGGC--
T ss_pred CCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---CeEEEcCCCchHHHHHHHHHHhhhc
Confidence 7777899999999999999999999988778999999998875556555443 4567778889999999999998642
Q ss_pred --CCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 81 --SELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 81 --~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
.++|++|+||+||+++++|+++++.+.+ +++++++.|+.|++++++++|.+.++++|+.+|++||||+|+.+.|.++
T Consensus 98 ~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~qTPq~F~~~~L~~a 177 (231)
T 3q80_A 98 AEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRS 177 (231)
T ss_dssp -CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHH
T ss_pred CCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEEcCCcEEEHHHHHHH
Confidence 5899999999999999999999999877 6889999999999998876788999999999999999999999999999
Q ss_pred HHHHHh--cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 158 FELVNR--EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 158 ~~~~~~--~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+....+ +++++||+.++++..|.+|.+++++..++|||||+||..|+++++
T Consensus 178 ~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 178 YQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230 (231)
T ss_dssp HHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence 987654 358899999999999999999999999999999999999999985
No 2
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=100.00 E-value=9.1e-39 Score=252.64 Aligned_cols=213 Identities=24% Similarity=0.378 Sum_probs=183.7
Q ss_pred CCC-CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--CcEEEecCCccHHHHHHHHHhhc
Q 028081 1 MGA-NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~-~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sv~~al~~~ 77 (214)
||+ +.||+|++++|||||.|+++++.+++.+++|+|++++++.+.+++.+..++ ..+.++.++.++.+|+++|+..+
T Consensus 17 m~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~l 96 (246)
T 3f1c_A 17 MGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFV 96 (246)
T ss_dssp C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHHHH
Confidence 666 779999999999999999999998877899999999886555666666654 24667778889999999999988
Q ss_pred cc-----CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChH
Q 028081 78 DF-----NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPD 152 (214)
Q Consensus 78 ~~-----~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~ 152 (214)
.. +.++|++++||+||+++++|+++++.+..+++++++.|+.|++++.+++|.+..+.+|+.++..||||+|+.+
T Consensus 97 ~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~~r~~l~~~qtpq~f~~~ 176 (246)
T 3f1c_A 97 EKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMK 176 (246)
T ss_dssp HHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCGGGEEEEEEEEEEEHH
T ss_pred hhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEecChHHhhhhcCCceeEHH
Confidence 53 2589999999999999999999999988888889999999998887666777788899999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccCC
Q 028081 153 LLKKGFELV-NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 213 (214)
Q Consensus 153 ~l~~~~~~~-~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~~ 213 (214)
.|.+++... .++++++||+..+++..|.+|..++++..++|||||+||..|+++++.++.+
T Consensus 177 ~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~ 238 (246)
T 3f1c_A 177 KVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238 (246)
T ss_dssp HHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccccc
Confidence 999988765 2334789999999999999999999999999999999999999999988754
No 3
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=100.00 E-value=6.6e-34 Score=222.04 Aligned_cols=210 Identities=80% Similarity=1.211 Sum_probs=165.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++..+....+...++.++.++.++.++.+|+++|+..+..+
T Consensus 18 ~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~al~~~~~~ 97 (228)
T 2yc3_A 18 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVN 97 (228)
T ss_dssp -----CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSSHHHHHHHHHTTSCTT
T ss_pred cCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHhhccC
Confidence 45557999999999999999999999886689999999987522222222334445666666678899999999988644
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++++++++.+...++++++.+..++++.++++|.+.++++++.++..++|+.|+++.|.+++..
T Consensus 98 ~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~ 177 (228)
T 2yc3_A 98 SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFEL 177 (228)
T ss_dssp CSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBCCCCSCCCCEEEEEEEEECHHHHHHHHHH
T ss_pred CCEEEEecCCCccCCHHHHHHHHHHHHhcCceEEEEeccceEEEEcCCCceEEecCccceEEEeCCcEEEHHHHHHHHHH
Confidence 57899999999999999999999988766666777887777655554556666677888888899999999888888765
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
....++|+++...++.+.|.++..++++..++|||||+||..++.+++.+
T Consensus 178 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 227 (228)
T 2yc3_A 178 VKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED 227 (228)
T ss_dssp HHHHTCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred HHhcCCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence 54456889998888888899998888877899999999999999998754
No 4
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=100.00 E-value=1.4e-32 Score=215.23 Aligned_cols=205 Identities=29% Similarity=0.402 Sum_probs=164.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhccc-
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF- 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~- 79 (214)
||++.||+|++++|||||+|+++++++++.+++|+|+++++..+.+++.+. ++.++.+..||+++.+|+++|+..+..
T Consensus 27 m~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~~~~~gg~~~~~sv~~al~~~~~~ 105 (234)
T 1vpa_A 27 MSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-HEKVLGIVEGGDTRSQSVRSALEFLEKF 105 (234)
T ss_dssp GCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-CTTEEEEEECCSSHHHHHHHHHHHHGGG
T ss_pred cCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-cCCceEEeCCCCcHHHHHHHHHHHhhhc
Confidence 555669999999999999999999998876899999999875333333322 233456777888899999999988753
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
+.+++++++||+||+++++|+++++.+...++++++.+..++++.++.+| + .+++|+.++..++|+.|+++.+.+++.
T Consensus 106 ~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~g-v-~~~~r~~~~~~~~p~~f~~~~l~~~~~ 183 (234)
T 1vpa_A 106 SPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRILTPQAFSYEILKKAHE 183 (234)
T ss_dssp CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTE-E-EEECCTTEEEEEEEEEEEHHHHHHHHT
T ss_pred CCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCcEEEECCCC-c-ccCChhHeeeecCCccccHHHHHHHHH
Confidence 35789999999999999999999998766566666788888766655456 7 778888888889999999988877654
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
. +++.++...+++..|.++..++.+..++|||||+||+.++.+++.+.+
T Consensus 184 ~----~~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~~ 232 (234)
T 1vpa_A 184 N----GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWER 232 (234)
T ss_dssp T----CCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC-
T ss_pred h----cCCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhcccc
Confidence 3 245777777888888888888877679999999999999999987754
No 5
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.98 E-value=2.7e-31 Score=208.32 Aligned_cols=209 Identities=31% Similarity=0.450 Sum_probs=165.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC-cEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.+ +..++. .+.++.++.++.+|+++|+..+.
T Consensus 21 ~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~v~~~~~~~g~~~~i~~al~~~~- 97 (236)
T 1i52_A 21 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD-SRFAQ-LPLANHPQITVVDGGDERADSVLAGLKAAG- 97 (236)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC-CSGGG-SGGGGCTTEEEEECCSSHHHHHHHHHHTST-
T ss_pred cCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH-HHHHH-HHhcCCCCEEEECCCCCHHHHHHHHHHhcC-
Confidence 454579999999999999999999998866899999998653 22333 334432 45556566778999999998884
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEEeeeccccEEEecCC-CceeeecCccchhhhcCCcccChHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~~~~~~~~~~~~~~~-g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
+.+.+++++||+||+++++++++++.+...+ .++++.+..++++.++++ |.+..++++..+|..|+|+.|+++.+.++
T Consensus 98 ~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~p~~f~~~~l~~~ 177 (236)
T 1i52_A 98 DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDC 177 (236)
T ss_dssp TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHH
T ss_pred CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccEEEEcCCCCceeeccChHhheeeeCCceecHHHHHHH
Confidence 3578999999999999999999998776554 456677887775555444 56767778888999999999999888888
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
+.....+|.++++...+++..|.++..++.+..++|||||+||..++.+++.+..
T Consensus 178 ~~~~~~~g~~~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~~~ 232 (236)
T 1i52_A 178 LTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH 232 (236)
T ss_dssp HHHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC---
T ss_pred HHHHHhcCCCcccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHhhh
Confidence 8766566777888888888888888888877789999999999999999887643
No 6
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.97 E-value=3e-30 Score=202.00 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=161.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--C--cEEEecCCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--V--DLKFSLPGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~sv~~al~~~~- 78 (214)
++||+|++++|||||+|+++++.+++.+++|+|+++++..+.+++.+..++ . ...+..++.++.+|+++|+..+.
T Consensus 20 ~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 99 (236)
T 2vsh_A 20 NLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDA 99 (236)
T ss_dssp --CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECCCCchHHHHHHHHHHHHh
Confidence 468999999999999999999998866899999999875344666665555 2 34566777788999999998874
Q ss_pred --c--CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCC-ceeeecCccchhhhcCCcccChHH
Q 028081 79 --F--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLDRKTLWEMQTPQVIKPDL 153 (214)
Q Consensus 79 --~--~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g-~v~~~~~r~~~~~~~~p~~f~~~~ 153 (214)
. +.+++++++||+||+++++++++++.+.+.++++++.+..++++.. ++| .+..+.++..++..++|+.|+++.
T Consensus 100 ~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~p~~f~~~~ 178 (236)
T 2vsh_A 100 YRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVES-TNGQFITDIPNRAHLYQGQTPQTFRCKD 178 (236)
T ss_dssp HSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEECCSCEEEC-SSSSBCCBCCCGGGEEEEEEEEEEEHHH
T ss_pred hccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEeccccEEEe-CCCCeeeeecChHHheeecCCcEecHHH
Confidence 2 3478999999999999999999999887665456677888887664 456 676777777777677899999988
Q ss_pred HHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 154 LKKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 154 l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+..++......+++ +++...++...|.++..++.+..++|||||+||..++.+++
T Consensus 179 l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 179 FMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 87777643333444 78877777788889998887778999999999999999875
No 7
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.97 E-value=6.6e-30 Score=198.53 Aligned_cols=205 Identities=30% Similarity=0.410 Sum_probs=162.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|++..||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+. +..+.++.++.++.+++..|+..++ +
T Consensus 16 ~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~al~~~~-~ 92 (223)
T 2xwl_A 16 LRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG--GEDSVIVSGGVDRTESVALALEAAG-D 92 (223)
T ss_dssp GTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC--BTTEEEEECCSSHHHHHHHHHTTCT-T
T ss_pred cCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc--cCCeEEEcCCCCHHHHHHHHHHhcC-C
Confidence 444579999999999999999999998766899999999875333443322 2345566666678899999998883 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHH-HhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDA-LRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~-~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
.+.+++++||+||+++++++++++.+ .+.++++++.+..++.+.++++|.+..+.+++.++..++|+.|+++.+..++.
T Consensus 93 ~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~~~~~d~~~~~~~~g~~~~~~e~~~l~~~~~p~~f~~~~l~~~~~ 172 (223)
T 2xwl_A 93 AEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYA 172 (223)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHHTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHT
T ss_pred CCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEEecccceEEEcCCCcEEeecChHHheeeeCCcccCHHHHHHHHH
Confidence 67899999999999999999999988 55566677788888877766567777777887777778899999887776654
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.. .++++++...++...|.++..++.+..++|||||+||..++.+++.+
T Consensus 173 ~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 221 (223)
T 2xwl_A 173 RA--TAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH 221 (223)
T ss_dssp TC--CSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred Hh--hCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence 31 14677888888887888888888777889999999999999988765
No 8
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.97 E-value=9.6e-30 Score=198.70 Aligned_cols=203 Identities=28% Similarity=0.432 Sum_probs=155.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.+ +..++ ..+.++.++.++.+|+++|+.++..
T Consensus 20 ~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~si~~~l~~~~~ 97 (231)
T 1vgw_A 20 FGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADK-VQTAFPQVRVWKNGGQTRAETVRNGVAKLLE 97 (231)
T ss_dssp -----CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHH-HHHHCTTSEEECCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH-HHHHH-HHhcCCCceEEEcCCCcHHHHHHHHHHHHhh
Confidence 444569999999999999999999998866899999998764 23444 44443 2455666777889999999988742
Q ss_pred -----CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHH
Q 028081 80 -----NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDL 153 (214)
Q Consensus 80 -----~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~ 153 (214)
+.+.+++++||+||+++++++++++.+...+ +++++.+..++.+..+ +|.+....+++.++..++|++|+++.
T Consensus 98 ~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~p~~f~~~~ 176 (231)
T 1vgw_A 98 TGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAE-SGQISATVDRSGLWQAQTPQLFQAGL 176 (231)
T ss_dssp HSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEES-SSBEEEEECCTTEEEEEEEEEEEHHH
T ss_pred hccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccceEEeC-CCceEecCChHHheeeeCCcEecHHH
Confidence 3588999999999999999999999876544 4666788887766543 45666667777777788999999988
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 154 LKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.+++.....+| +++...++...|.++..++.+..++|||||+||..++.+++
T Consensus 177 l~~~~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 177 LHRALAAENLGG--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp HHHHHHC----C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcC--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 887765433333 67777788878888988887778999999999999998875
No 9
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.96 E-value=1.8e-28 Score=192.47 Aligned_cols=197 Identities=32% Similarity=0.452 Sum_probs=155.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++ ||+|++++|+|||+|++++ . ..+++|+|++++ .+ .+ +... .+.++.++.++..++..|+..+.
T Consensus 39 m~~~-~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~---~~-~~~~--~v~~~~~~~~~~~~i~~al~~~~-- 105 (236)
T 2px7_A 39 LGRG-PKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GA---EP-PKGL--GAVFLEGGATRQASVARLLEAAS-- 105 (236)
T ss_dssp ---C-CGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TC---CC-CTTC--SCEEEECCSSHHHHHHHHHHHCC--
T ss_pred CCCC-CCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HH---HH-hhcC--CcEEEeCCCchHHHHHHHHHHcC--
Confidence 4444 9999999999999999999 3 458999999986 32 12 2222 34556666678999999998885
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++++++++.+...++++++.+..++.+..+ +|.+..+++++.++.+++|+.|+++.+.+++..
T Consensus 106 ~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~ 184 (236)
T 2px7_A 106 LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPE-GEAYGRVVPREAFRLVQTPQGFFTALLREAHAY 184 (236)
T ss_dssp SSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEC-SSSCEEEECGGGCEEECSCEEEEHHHHHHHHHH
T ss_pred CCeEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEEEec-CCeEEecCChHhhccccCCeEEcHHHHHHHHHH
Confidence 5789999999999999999999998766666666778877766554 566767777877777889999999888887766
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
....++++++...+++..|.++..+..+..++|||||+||..++.+++.+.
T Consensus 185 ~~~~g~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 235 (236)
T 2px7_A 185 ARRKGLEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235 (236)
T ss_dssp HHHHTCCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred HHhcCCCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence 555567888888888888888888877778999999999999999988654
No 10
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.95 E-value=4e-28 Score=201.16 Aligned_cols=189 Identities=25% Similarity=0.349 Sum_probs=151.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++++++.+++|+|+++ +. +.+++.+. .+.++.++.++.+|+++|++++.
T Consensus 17 mg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~-~~i~~~~~----~v~~v~~g~g~~~sv~~aL~~l~-- 88 (371)
T 1w55_A 17 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NI-TYMKKFTK----NYEFIEGGDTRAESLKKALELID-- 88 (371)
T ss_dssp TCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CH-HHHHTTCS----SSEEEECCSSHHHHHHHHHTTCC--
T ss_pred CCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CH-HHHHHHhC----CCEEEeCCCChHHHHHHHHHhcC--
Confidence 555579999999999999999999998667899999998 42 33433222 24556777889999999999875
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++|+++++.+.+.++++++.+..++++++ ..+.+|+.++..++|+.|+++.+.+++..
T Consensus 89 ~d~vlv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v------~~t~~r~~l~~~~~P~~f~~~~l~~~~~~ 162 (371)
T 1w55_A 89 SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFD------NEALQREKIKLIQTPQISKTKLLKKALDQ 162 (371)
T ss_dssp SSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEET------TEEECGGGCCEECSCEEEEHHHHHHHTSS
T ss_pred CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeee------eeecCccceeecCCcceecHHHHHHHHHh
Confidence 589999999999999999999998877666677788888776542 13457777888889999999888776542
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++ .++...++++.|.++..++++..++|||||+||..++ +++
T Consensus 163 ---~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~ 205 (371)
T 1w55_A 163 ---NLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT 205 (371)
T ss_dssp ---CCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred ---ccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence 223 7888888888899999888877899999999999998 764
No 11
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.93 E-value=2.8e-25 Score=175.68 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=139.7
Q ss_pred CceeeeeCCeehHHHHH-HHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc-CCC
Q 028081 6 PKQYLPLLGQPIALYSF-YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSE 82 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i-~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~-~~~ 82 (214)
+|+|++++|||||.|++ +++++++ +++|+|+++++ .+.+.+..+|..+.+.. +.....+++.+|+..+.. +.|
T Consensus 17 ~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~---~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d 92 (253)
T 4fcu_A 17 GKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDE---RIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADD 92 (253)
T ss_dssp TGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCH---HHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTC
T ss_pred CCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHH---HHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCC
Confidence 49999999999999999 9998875 89999999863 46677777777665532 222334568888877752 358
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeeccc------c--EEE-ecCCCceee----ec--Cccc-----
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAKA------T--IKE-ANSESFVVR----TL--DRKT----- 139 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~~------~--~~~-~~~~g~v~~----~~--~r~~----- 139 (214)
++++++||+||+++++|+++++.+.+. + .++++.++.+ + ++. .+.+|.+.. ++ +|+.
T Consensus 93 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~ 172 (253)
T 4fcu_A 93 IIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE 172 (253)
T ss_dssp EEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSS
T ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccc
Confidence 999999999999999999999988654 2 2445566432 2 222 244565432 11 2221
Q ss_pred ------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CcccCCHHHHHHHHHHhhcc
Q 028081 140 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 140 ------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~-~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+..-.-|+|+...|..+.. .....++.++..++++ ++|.+|.++..+.. +++||||+||+.|+++++.|
T Consensus 173 ~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 173 PTLHTQAFRHLGLYAYRVSLLQEYVT-WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CCCCSCCEEEEEEEEEEHHHHHHHTT-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred cccccceeEEEEEEEeCHHHHHHHHh-CCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 12222347899887766432 1111234555555554 67999998887666 89999999999999998766
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 252 ~ 252 (253)
T 4fcu_A 252 F 252 (253)
T ss_dssp G
T ss_pred c
Confidence 3
No 12
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.93 E-value=7.5e-25 Score=174.19 Aligned_cols=200 Identities=13% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcc-cC
Q 028081 4 NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FN 80 (214)
Q Consensus 4 ~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~-~~ 80 (214)
..| |+|++++|||||.|+++++.+++ +++|+|++++ +.+++.++.++..+.+... .....+.+..++..+. .+
T Consensus 31 Rlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~ 106 (264)
T 3k8d_A 31 RLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDH---EDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSD 106 (264)
T ss_dssp SSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCT
T ss_pred CCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCC
Confidence 456 99999999999999999999886 8999999964 3466777777766554321 1112233555555553 23
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------EEEe-cCCCceee----ec--Cccc----
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------IKEA-NSESFVVR----TL--DRKT---- 139 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~--------~~~~-~~~g~v~~----~~--~r~~---- 139 (214)
.|.|++++||+||+++++|+++++.+...+ .++++.++.++ ++.+ +.+|.+.. ++ +|+.
T Consensus 107 ~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~ 186 (264)
T 3k8d_A 107 DTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEG 186 (264)
T ss_dssp TCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHC
T ss_pred CCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCcccccc
Confidence 689999999999999999999999887543 46777887652 3333 55676543 22 3321
Q ss_pred -------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEE-ecCCCCcccCCHHHHHHHHHHhh
Q 028081 140 -------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYIT-EGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 140 -------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v-~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+..-.-|+|+...|..+.. .....++.++..++++ +.|.+|.++ ..+..+++||||+||+.|+++++
T Consensus 187 ~~~~~~~~~~~~GiY~y~~~~l~~~~~-~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~ 264 (264)
T 3k8d_A 187 LETVGDNFLRHLGIYGYRAGFIRRYVN-WQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 264 (264)
T ss_dssp SSCCCSCCEEECSEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred ccccCCcceEEEEEEEECHHHHHHHHh-CCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence 12222347888887766533 1111122233233333 679999986 55678899999999999999874
No 13
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.92 E-value=1.5e-24 Score=170.67 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=140.0
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+..++..+.... ......+++..++..+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 92 (245)
T 1h7e_A 18 GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP---RVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIY 92 (245)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH---HHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHSC--CSEE
T ss_pred CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcH---HHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhCC--CCEE
Confidence 899999999999999999999987559999999863 35666666665543321 22344677778887763 5889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeecc-------ccEEEe-cCCCceeee-----c-Cccc----hhhh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAK-------ATIKEA-NSESFVVRT-----L-DRKT----LWEM 143 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~-------~~~~~~-~~~g~v~~~-----~-~r~~----~~~~ 143 (214)
++++||+||+++++++++++.+... + .++++.+.. ..++.+ +++|.+... . +|.. .+..
T Consensus 93 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~ 172 (245)
T 1h7e_A 93 INLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKH 172 (245)
T ss_dssp EECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEE
T ss_pred EEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCcccccCceeEE
Confidence 9999999999999999999987654 3 345566651 122222 334544321 1 2321 3446
Q ss_pred cCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 144 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 144 ~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
.++|.|+.+.|..++ .....+++++|....++ ..|.++..+..+..++|||||+||..|+.+++.++
T Consensus 173 ~g~y~~~~~~l~~~~-~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~~ 241 (245)
T 1h7e_A 173 VGIYAYRRDVLQNYS-QLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp EEEEEEEHHHHHHGG-GSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHH-hCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 678999988776654 11111234455444444 56889998888888999999999999999987654
No 14
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.92 E-value=2.4e-25 Score=173.59 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=128.9
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-----ecCCccHHHHHHHHHhhcccC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-----SLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sv~~al~~~~~~ 80 (214)
||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.++.++..+.. ..++.++.+|+++|++.+..+
T Consensus 20 ~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~ 96 (228)
T 1ezi_A 20 LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGL---IAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN 96 (228)
T ss_dssp TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHH---HHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCC
T ss_pred CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHH---HHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCC
Confidence 8999999999999999999998876899999997643 45556666654421 225667899999999988433
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-cEEE--ecCCCceeeecCccchhhhcCCcccChHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIKE--ANSESFVVRTLDRKTLWEMQTPQVIKPDLLK 155 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~-~~~~--~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~ 155 (214)
.+.+++++||+||+++++|+++++.+... ++++++.+..+ +.+. ++++|.+..+.+++.++ |+.+.+.
T Consensus 97 ~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~ 169 (228)
T 1ezi_A 97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE-------QPRQQLP 169 (228)
T ss_dssp SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEESSCHHHHT-------CCGGGSC
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceeeEEcCCCcEeecccccccc-------CCcccCc
Confidence 58899999999999999999999877543 45777788776 3322 14345555554443221 1111111
Q ss_pred HHHHHHHhcCCCCCcHHHHHHh---CCCCeEEEe-cCCCCcccCCHHHHHHHHHHhhc
Q 028081 156 KGFELVNREGLEVTDDVSIVEH---LKHPVYITE-GSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~~~---~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..+.. ..|.|+++...+.+. .|.++..+. ++..++|||||+||..|+.+++.
T Consensus 170 ~~~~~--~~giy~~~~~~l~~~~~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 170 QAFRP--NGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp CEEEE--EEEEEEEEHHHHHHHTSSCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred hhhee--eeEEEEEeHHHHhhCCcccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 10000 123455555555444 577766544 44679999999999999998865
No 15
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.91 E-value=8e-24 Score=167.54 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=134.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcc-cCCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVD-FNSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~-~~~~~ 83 (214)
||+|++++|||||.|+++++.+++ +++|+|+|++ +.+++.++.+|..+.+.. ......+.+..|++.+. .+.|.
T Consensus 25 ~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~ 100 (256)
T 3tqd_A 25 GKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDD---KRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEI 100 (256)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCE
T ss_pred CCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCE
Confidence 699999999999999999999886 8999999975 346777777887665532 22223455788888773 23689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc---CCeEEeeecccc--------EEE-ecCCCceeee----c--Ccc-------
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV---GAAVLGVPAKAT--------IKE-ANSESFVVRT----L--DRK------- 138 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~---~~~i~~~~~~~~--------~~~-~~~~g~v~~~----~--~r~------- 138 (214)
+++++||+||+++++|+++++.+.+. +.++.+.|+.+. ++. .+.+|.+... + +|+
T Consensus 101 vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~ 180 (256)
T 3tqd_A 101 IVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKEN 180 (256)
T ss_dssp EEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGG
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccc
Confidence 99999999999999999999988653 346677776432 222 3455654321 2 222
Q ss_pred -----chhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCC-CCcccCCHHHHHHHHHHh
Q 028081 139 -----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSY-TNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 139 -----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~ 207 (214)
..+.+-.-|+|+...|..+.. ...+.++.++..+++ .++|.+|.++..+. .+++||||+||+.+++++
T Consensus 181 ~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 181 LQLNGSHYRHVGIYAYRVGFLEEYLS-WDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp CCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred cccCCcceEEEEEEEcCHHHHHHHHh-CCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence 122333458899887765432 211112222222333 35899999888764 579999999999998753
No 16
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.91 E-value=2e-23 Score=178.07 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=148.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+.++||+|++++|||||+|+++++.+++ +++|+|+++++. +.+++.+..++..+..-....+..+++++|++.+. +
T Consensus 22 l~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~i~~~~~~~~-~ 98 (459)
T 4fce_A 22 MYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGG-ELLKKTLADPSLNWVLQAEQLGTGHAMQQAAPHFA-D 98 (459)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHC-----CEEECSSCCCHHHHHHHHGGGSC-T
T ss_pred CCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCcEEEeCCCCCCcHHHHHHHHHhcC-C
Confidence 55668999999999999999999999886 899999998875 55666655544333222223456889999999886 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhc-CCcc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQ-TPQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~-~p~~ 148 (214)
.+.+++++||+||+++++++++++.+.+.+.++++.+..++. ...+ +|.+..+.++... +..+ .-+.
T Consensus 99 ~~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 177 (459)
T 4fce_A 99 DEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEHKDASDAQREINEINTGILV 177 (459)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEE
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEecCCCCcccEEEeC-CCcEEEEEECCCCChHHhhccEEEEEEEE
Confidence 589999999999999999999999876666677777776652 1223 4666655443211 1111 1356
Q ss_pred cChHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 149 IKPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 149 f~~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
|+...|.+++.... ...++++|....+...|.++..+..+ ..+++||||+||..|+.+++.+
T Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~ 245 (459)
T 4fce_A 178 ANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE 245 (459)
T ss_dssp EEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 77776666554421 22367888888888889999988776 4679999999999999988755
No 17
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.90 E-value=7.2e-23 Score=161.99 Aligned_cols=202 Identities=13% Similarity=0.196 Sum_probs=135.4
Q ss_pred CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcc-cCC
Q 028081 5 MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNS 81 (214)
Q Consensus 5 ~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~-~~~ 81 (214)
.| |+|++++|||||+|+++++.+++ +++|+|++++ +.+++.+..+|..+.+... .....+.+..++..+. .+.
T Consensus 16 lp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~ 91 (252)
T 3oam_A 16 LPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDD---ERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPAD 91 (252)
T ss_dssp STTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTT
T ss_pred CCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCH---HHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCC
Confidence 45 99999999999999999999886 8999999975 3467777777766655422 1122344667777663 136
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EE-EecCCCceee-----ec-Cccc-----
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IK-EANSESFVVR-----TL-DRKT----- 139 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~-~~~~~g~v~~-----~~-~r~~----- 139 (214)
+.+++++||+||+++++|+++++.+.+. +.++++.++.++ .+ ..+++|.+.. ++ .|..
T Consensus 92 d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~ 171 (252)
T 3oam_A 92 HIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKAD 171 (252)
T ss_dssp SEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSS
T ss_pred CEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccc
Confidence 8999999999999999999999988654 346667777653 12 2345566544 21 1211
Q ss_pred ------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEe-cCCCCcccCCHHHHHHHHHHhhcc
Q 028081 140 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITE-GSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 140 ------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+..-..|+|+.+.|..+.... .+.++.++..+.+ .+.|.+|.++. .+..+++||||+||+.|+++++.|
T Consensus 172 ~~~~~~~~~n~GiY~~~~~~l~~~~~~~-~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 172 KAIVQPLLRHIGIYAYRAGFINTYLDWQ-PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCCSCEEEEEEEEEEETTHHHHHHHSC-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccccccceEEEEEEEcCHHHHHHHHcCC-CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1122235889988777654321 0001111111222 34689999864 456789999999999999999876
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 251 ~ 251 (252)
T 3oam_A 251 A 251 (252)
T ss_dssp T
T ss_pred c
Confidence 3
No 18
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.88 E-value=8.3e-22 Score=167.96 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=145.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+++.||+|++++|||||+|+++++..++ +++|+|++++.. +.+.+.+..++..+..-....+..+++++|++.+..
T Consensus 19 l~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~- 95 (456)
T 2v0h_A 19 MYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGG-DLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKD- 95 (456)
T ss_dssp GCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTH-HHHHHHTTTCCCEEEECSCCCCHHHHHHHHGGGCCT-
T ss_pred cCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhhcCCcEEEeCCCCCCcHHHHHHHHHhcCC-
Confidence 45567999999999999999999999886 899999999864 445555544433222222233567899999988752
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhcC-Ccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-PQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-p~~ 148 (214)
.+.+++++||+||+++++++++++.+.+.+.++++.+..++. ...+ +|.+..+.++... +..++ ++.
T Consensus 96 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 174 (456)
T 2v0h_A 96 NENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQKDANAEQLNIKEVNTGVMV 174 (456)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTTTCCHHHHTCCEEEEEEEE
T ss_pred CCeEEEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecCCCCccceEEEc-CCcEEEEEECCCCChhHhcCcEEEEEEEE
Confidence 578999999999999999999998875544455566665542 1123 4666555443221 22233 688
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 149 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 149 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
|+.+.|.++++.... ..++++|....+...|.++..+..+ ..+++||||+||..++.++..+
T Consensus 175 ~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~ 242 (456)
T 2v0h_A 175 SDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNK 242 (456)
T ss_dssp EEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHH
Confidence 988777666543221 2356788777788888889887763 3578999999999999887643
No 19
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.88 E-value=7.7e-22 Score=150.19 Aligned_cols=174 Identities=20% Similarity=0.136 Sum_probs=123.7
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC-ccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..++ +++|+|+++++. +.+.+.+..++..+....++ .++.+++..|+..+..+.+.
T Consensus 21 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~ 98 (199)
T 2waw_A 21 TPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAA-DEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEG 98 (199)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTH-HHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSE
T ss_pred CCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCe
Confidence 6899999999999999999999886 899999998764 44555555555444332332 34478899999988423688
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||+++++++++++. . .++.+ +.+..+ |.- .+|+.|+++.+..+...
T Consensus 99 vlv~~~D~P~~~~~~i~~l~~~-~-~~~~~-~~~~~~--------g~~------------~~P~~~~~~~l~~~~~~--- 152 (199)
T 2waw_A 99 IVLMLGDQPGITASAVASLIAG-G-RGATI-AVCEYA--------NGI------------GHPFWVSRGVFGDLAEL--- 152 (199)
T ss_dssp EEEEETTCTTCCHHHHHHHHHH-H-TTCSE-EEEEET--------TEE------------EEEEEEEGGGHHHHHTC---
T ss_pred EEEEeCCcccCCHHHHHHHHhh-c-CCCCE-EEEecC--------Ccc------------cCCEEEcHHHHHHHHhc---
Confidence 9999999999999999999987 3 33322 222221 210 14677887766655421
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+ -.+...++++.|.++..++.+ ..++|||||+||..++.+++
T Consensus 153 ~~--~~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 153 HG--DKGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp SS--TTCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 11 123455666777788877764 47899999999999998875
No 20
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.88 E-value=1.6e-21 Score=166.82 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=143.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. .+.++.+ ..++.++++.|++.+.
T Consensus 25 ~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iivv~~~~~-~~i~~~~~~---~i~~v~~~~~~G~~~sl~~a~~~~~ 99 (468)
T 1hm9_A 25 MKSDLPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG---QTEFVTQSEQLGTGHAVMMTEPILE 99 (468)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHTTC-CSEEEEEECTTH-HHHHHSSSS---SSEEEECSSCCCHHHHHHTTHHHHT
T ss_pred CCCCCCcEeeEECCccHHHHHHHHHHhcC-CCCEEEEECCCH-HHHHHHhCC---CcEEEeCCccCChHHHHHHHHHHhc
Confidence 45567999999999999999999999885 899999998864 344443322 2333322 3356888999998875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecCccc--------hhhhc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRKT--------LWEMQ 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~--------~~~~~ 144 (214)
...+.+++++||+||+++++++++++.+.+.+ .++.+.+..++. ...+++|.+..+.++.. .+...
T Consensus 100 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 179 (468)
T 1hm9_A 100 GLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINT 179 (468)
T ss_dssp TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTTTCCTTGGGCCEEEE
T ss_pred cCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECCCCChHHhcCeEEEE
Confidence 33578999999999999999999999886544 345555665542 22344566665544311 12233
Q ss_pred CCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.++.|+.+.|.+++...... .++++|....+...|.++..+..+ ...++||||+||..++.++..+
T Consensus 180 Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~ 251 (468)
T 1hm9_A 180 GTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 251 (468)
T ss_dssp EEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHH
Confidence 57899988776665432221 256787777777778888876544 3457799999999999877543
No 21
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.86 E-value=9e-21 Score=150.67 Aligned_cols=199 Identities=13% Similarity=0.213 Sum_probs=126.1
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc-CCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~-~~~~ 83 (214)
+|+|++++|||||+|+++++.+++ +++|+|+++++ .+.+.+..++..+.... ......+++..++..+.. ..+.
T Consensus 18 ~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 93 (262)
T 1vic_A 18 GKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNE---NVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEI 93 (262)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCH---HHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCE
T ss_pred CCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcH---HHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCE
Confidence 499999999999999999999886 59999999864 35566666665543221 111112233334444421 3578
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EEEe-cCCCceeee----c--Cccchh-----
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVVRT----L--DRKTLW----- 141 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~~~-~~~g~v~~~----~--~r~~~~----- 141 (214)
+++++||+||+++++|+++++.+... ++++++.+..++ .+.+ +++|.+... . +|+. +
T Consensus 94 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~-~~~~~~ 172 (262)
T 1vic_A 94 IVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ-FMNLQD 172 (262)
T ss_dssp EEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH-HTTCSC
T ss_pred EEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcc-cccccc
Confidence 99999999999999999999987654 446777787663 2222 445655321 1 1322 1
Q ss_pred --hhcCCc---------ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHH
Q 028081 142 --EMQTPQ---------VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 142 --~~~~p~---------~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~ 206 (214)
..++|+ +|+...+........ .....+.. .. +...|.++..+..+ ..++|||||+||..|+.+
T Consensus 173 ~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~-~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 250 (262)
T 1vic_A 173 VQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQ-LR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAI 250 (262)
T ss_dssp GGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTT-HH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred ccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHH-HH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 225563 555555543211000 00001111 11 23458899988887 789999999999999999
Q ss_pred hhccc
Q 028081 207 LNLSS 211 (214)
Q Consensus 207 ~~~~~ 211 (214)
++.+.
T Consensus 251 l~~~~ 255 (262)
T 1vic_A 251 LAANG 255 (262)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87553
No 22
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.86 E-value=7.6e-21 Score=148.38 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=126.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++.++ +++|+|+++++ .+.+.+..+ ..+.+... .....+++..|++.+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~---~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v 89 (234)
T 2y6p_A 18 EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSE---RVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLI 89 (234)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCH---HHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTCC--CSEE
T ss_pred CCcceeECCEEHHHHHHHHHHHh--CCEEEEECChH---HHHHHHHhc-eEEEECCcccccchHHHHHHHHhCC--CCEE
Confidence 89999999999999999999887 79999999873 355555554 44433321 1223444556776664 5789
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc-------ccEEE-ecCCCceeeec----C--cc----chhhhcCC
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK-------ATIKE-ANSESFVVRTL----D--RK----TLWEMQTP 146 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~-------~~~~~-~~~~g~v~~~~----~--r~----~~~~~~~p 146 (214)
++++||+||+++++++++++.+.+.+..+++.... +..+. .+++|.+..+. + |. ..+...++
T Consensus 90 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~~~~~~~~~~~~~gi 169 (234)
T 2y6p_A 90 INYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGI 169 (234)
T ss_dssp EECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEEEECTTSBEEEEESSCCSCCSSCCSSCCEEEEEE
T ss_pred EEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEEEEcCCCCEeeeecCCCCcccccccceeeEEEEE
Confidence 99999999999999999999886654433332221 22222 24456654322 1 22 13345678
Q ss_pred cccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.|+.+.|..+.... ...+..++.... +...|.++..++.+..++|||||+||..++.+++
T Consensus 170 y~~~~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~ 232 (234)
T 2y6p_A 170 YGFRKETLMEFGAMP-PSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK 232 (234)
T ss_dssp EEEEHHHHHHHHHSC-CCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC
T ss_pred EEcCHHHHHHHHhCC-CCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHh
Confidence 999988776644311 000001111111 2335788998888888999999999999999875
No 23
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.85 E-value=1.4e-20 Score=143.03 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=118.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~ 82 (214)
+.||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+..++..+....+ ..++.+++..|++.+..+.+
T Consensus 20 g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~ 97 (197)
T 2wee_A 20 GTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAA-SAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRAT 97 (197)
T ss_dssp SSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTH-HHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEE
T ss_pred CCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCC
Confidence 36999999999999999999999886 899999998764 4455555445544332222 23468999999988742357
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVN 162 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~ 162 (214)
.+++++||+||+++++++++++. .. +..+ +.|.. +|.. ++|+.|++..+..+.. .
T Consensus 98 ~vlv~~~D~P~~~~~~i~~l~~~-~~-~~~i-~~~~~--------~g~~------------~~P~~~~~~~l~~l~~-~- 152 (197)
T 2wee_A 98 GIVLMLGDQPQVAPATLRRIIDV-GP-ATEI-MVCRY--------ADGV------------GHPFWFSRTVFGELAR-L- 152 (197)
T ss_dssp EEEEEETTCTTCCHHHHHHHHHH-GG-GSSE-EEEEE--------TTEE------------EEEEEEEGGGHHHHHT-C-
T ss_pred eEEEEeCCcCCCCHHHHHHHHhh-cC-CCCE-EEEec--------CCCc------------CCCEEECHHHHHHHHh-C-
Confidence 89999999999999999999987 32 2222 22322 1211 1466787766655431 1
Q ss_pred hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 163 REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 163 ~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+- .....++++.+.++..++.+ ..++|||||+||..++.++
T Consensus 153 -~~~--~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 153 -HGD--KGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp -CST--THHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred -CCC--hhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 110 11234566667788877753 4789999999999987654
No 24
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.85 E-value=1.3e-20 Score=146.83 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=118.4
Q ss_pred ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-----CCccHHHHHHHHHhhcccCC
Q 028081 7 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 7 K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sv~~al~~~~~~~ 81 (214)
|+|++++|||||+|+++++++++.+++|+|+++++ .+.+.+..++..+.... +..+..+++.+|+..+. +.
T Consensus 20 K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~~ 95 (229)
T 1qwj_A 20 KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD---EIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-EV 95 (229)
T ss_dssp TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH---HHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-TC
T ss_pred cccceECCEEHHHHHHHHHHhCCCcCEEEEECChH---HHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-CC
Confidence 99999999999999999999887679999999653 35666667776553321 33445688999998874 36
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccEEE-ecCCCc--eee--ecCcc-chhhhcCCcccChHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKE-ANSESF--VVR--TLDRK-TLWEMQTPQVIKPDL 153 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~~~-~~~~g~--v~~--~~~r~-~~~~~~~p~~f~~~~ 153 (214)
|.+++++||+||+++++|+++++.+...++ ++++.+..++.+. +. +|. +.+ +.... .-...+.|..+.
T Consensus 96 d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (229)
T 1qwj_A 96 DIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQ-KGVREVTEPLNLNPAKRPRRQDWDGELY--- 171 (229)
T ss_dssp SEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCC-SSTTCCCCBSSSBTTBCCCTTTSCCEEE---
T ss_pred CEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhcc-ccccccccccccccccccCCCCCCceEE---
Confidence 899999999999999999999998865433 4444445454332 11 111 100 00000 000001111110
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEE-EecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 154 LKKGFELVNREGLEVTDDVSIVE--HLKHPVYI-TEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~-v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
.+.|.|..+...++. ..|..+.+ +..+..++|||||+||..|+.+++....
T Consensus 172 --------~n~giY~~~~~~l~~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 225 (229)
T 1qwj_A 172 --------ENGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGY 225 (229)
T ss_dssp --------EEEEEEEEEHHHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHSC
T ss_pred --------EeeEEEEEEHHHhccccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhcc
Confidence 001222222111111 23566765 4444679999999999999999876543
No 25
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=2.8e-22 Score=152.58 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC--cEEEe-cCCccHHHHHHHHHhhcccC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV--DLKFS-LPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~~~sv~~al~~~~~~ 80 (214)
.||+|++++|||||+|+++++.+++ +++|+|+++++. +.+.+.+.. ++. .+.++ ..+.++.+|+.+|+..+
T Consensus 17 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~si~~al~~~--- 91 (196)
T 3rsb_A 17 VEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNT-PKTKEYINSAYKDYKNIVVIDTSGKGYIEDLNECIGYF--- 91 (196)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTC-HHHHHHHHHHTTTTTEEEE--------CCCCCTTTTTC---
T ss_pred CCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHHhhccCCCCEEEEECCCCCcHHHHHHHHHhC---
Confidence 6899999999999999999999987 899999998875 456666554 321 23333 34556677788888776
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh-------cCCeEEeeeccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR-------VGAAVLGVPAKA 120 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~-------~~~~i~~~~~~~ 120 (214)
.+.+++++||+||+++++|+++++.+.. .+++++++|..+
T Consensus 92 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 138 (196)
T 3rsb_A 92 SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEK 138 (196)
T ss_dssp SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccc
Confidence 4789999999999999999999998865 244566666654
No 26
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.82 E-value=5.9e-20 Score=140.05 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=107.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..+ +|+||+++.. +.+.+.+. .+. +..... ..++.+|+..|++.+. +.+.
T Consensus 18 ~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~-~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~ 89 (197)
T 3d5n_A 18 GDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYV-NEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDA 89 (197)
T ss_dssp SSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTH-HHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSE
T ss_pred CCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCH-HHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCc
Confidence 389999999999999999999754 7888888763 33443333 333 221111 2356899999999885 2478
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||++++.++++++.+ ..+..+ +.|..+ |. ..+|+.|+++.+..+.. .
T Consensus 90 vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-l-- 144 (197)
T 3d5n_A 90 VLVALGDMPFVTKEDVNKIINTF-KPNCKA-VIPTHK--------GE------------RGNPVLISKSLFNEIEK-L-- 144 (197)
T ss_dssp EEEEETTCCCSCHHHHHHHHHTC-CTTCSE-EEEEET--------TE------------ECSCEEEEHHHHHHHHH-C--
T ss_pred EEEEeCCccccCHHHHHHHHHHh-cCCCcE-EEEEeC--------Cc------------ccCCEEECHHHHHHHHc-c--
Confidence 99999999999999999999876 333222 222211 21 12588899887766542 2
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+ -++...++++.|.++..++.+ ..++|||||+||..++.++.
T Consensus 145 ~g--~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 145 RG--DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp CT--TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred CC--CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 22 134456777777777777654 35689999999999987654
No 27
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.81 E-value=7.8e-19 Score=141.76 Aligned_cols=198 Identities=16% Similarity=0.248 Sum_probs=132.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|||||.|+++++..++ +++|+|++++...+.+++.+.+ ++.++.++.. ..+...++..|+..+.
T Consensus 23 ~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~ 101 (295)
T 1lvw_A 23 AVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIG 101 (295)
T ss_dssp SSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHT
T ss_pred CCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHHhC
Confidence 46999999999999999999999886 8999998864433556666654 5555544432 2345778888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p~ 147 (214)
+.++++++ ||+||.+ ..+.++++.+.+ .++++.+.++.++. ...+++|.+..+. ++++ +...+++
T Consensus 102 -~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy 177 (295)
T 1lvw_A 102 -DSKVALVL-GDNVFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSN-YVVPGLY 177 (295)
T ss_dssp -TSCEEEEE-TTCCEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCS-EECCSEE
T ss_pred -CCcEEEEE-CCccccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEeE
Confidence 23555555 9999998 688999987743 34556677777652 1224456654332 2333 4556789
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecCC-CCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~-v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+.+.+..+. ... +..++++|....+...| ++.+ +.... .|+||+||+||..|+.+++
T Consensus 178 ~f~~~~l~~~~-~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 178 FYDNQVVEIAR-RIEPSDRGELEITSVNEEYLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp EECTTHHHHHH-HCCCCTTSCCCHHHHHHHHHHTT-CEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred EEcHHHHHHHH-hcCCcccCceeHHHHHHHHHHcC-CcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 99987765432 211 12256676655555555 3332 33334 5999999999999998875
No 28
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.80 E-value=1.3e-18 Score=138.69 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=133.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
++||+|++++|+|||+|+++++.+++ +++|+|+++++..+.+.+.+. .++..+.++.. ..+..+++..|+..+.
T Consensus 44 ~~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 122 (269)
T 4ecm_A 44 VTNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVG 122 (269)
T ss_dssp SSCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHT
T ss_pred CCCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcC
Confidence 67999999999999999999999886 899999999764344555554 24445544422 3345788888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCccc---hhhh-cCCcc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEM-QTPQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~-~~p~~ 148 (214)
.+.++++.||+|+. ..++++++.+... ++++.+.++.++ ....+ +|.+..+.++.. .+.. -.-++
T Consensus 123 --~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~g~v~~~~ekp~~~~~~~~~~Giy~ 197 (269)
T 4ecm_A 123 --NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYL 197 (269)
T ss_dssp --TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE-TTEEEEEEESCSSCSCSEEEEEEEE
T ss_pred --CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc-CCEEEEEEECCCCCCCcEEEEEEEE
Confidence 47899999999985 6788999887653 345556666553 11223 355554432110 0111 12357
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 149 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 149 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
|+...+ ..+.... ...+++++....+...| ++..+..+..++|||||+||..|+..+....
T Consensus 198 ~~~~~l-~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 198 YDSKVF-SYIKELKPSARGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp ECTTHH-HHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred ECHHHH-HhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 887655 3333221 12255666655566666 7777777778999999999999999987654
No 29
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.79 E-value=6e-18 Score=129.91 Aligned_cols=170 Identities=18% Similarity=0.278 Sum_probs=109.1
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-cCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..+ +|+||+++. +.+..+...++..+... ..+.++.+|+..|++++ .++
T Consensus 16 ~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~--~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~ 86 (208)
T 3ngw_A 16 MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDE--KQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSC 86 (208)
T ss_dssp SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSH--HHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSE
T ss_pred CCCcccEECCeeHHHHHHHHhcCC----CEEEEECCH--HHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCC
Confidence 699999999999999999999854 899998753 33444444455443221 12457899999999988 478
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV 161 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~~~ 161 (214)
+ +++||+||+++++|+++++.+...+..+. .|. + |.. .|- .|++..+..+....
T Consensus 87 v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v-~~~-~--------g~~-------------~Pl~al~~~~~~~~l~~~l 142 (208)
T 3ngw_A 87 V-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPK-H--------DYP-------------EPLLAYYAESAADELERAI 142 (208)
T ss_dssp E-EEETTCTTCCHHHHHHHHHHHHHHTCSEE-EEE-S--------SSB-------------CTTEEEECGGGHHHHHHHH
T ss_pred E-EEECCccCCCHHHHHHHHHHhhcCCCCEE-EEc-C--------CCe-------------eEEEEEEcHHHHHHHHHHH
Confidence 8 99999999999999999998764222221 222 2 110 232 25554444332222
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecC---------CCCcccCCHHHHHHHHHHhhcccC
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEGS---------YTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~~---------~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
..|-. ....++++.+ +..+..+ ...++||||+||+.++.+++.+..
T Consensus 143 -~~G~~--~~~~~l~~~~--~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~~~~~~~ 197 (208)
T 3ngw_A 143 -LQGIR--KILVPLERLN--VVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMST 197 (208)
T ss_dssp -HTTCC--CTHHHHHTSC--EEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHHHHHC--
T ss_pred -HcCCC--CHHHHHHhCC--EEEecHHHhcccCcccceEEecCCHHHHHHHHHHhccccc
Confidence 22211 1233445443 4444422 246899999999999998876543
No 30
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.79 E-value=1.2e-18 Score=140.67 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhccc
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~~ 79 (214)
.||+|++++|||||.|+++++..++ +++|+|++.+...+.+++.+.+ ++.++.++.. ..+...++..|+..+.
T Consensus 23 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~- 100 (293)
T 1fxo_A 23 ISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG- 100 (293)
T ss_dssp SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred CCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHHhC-
Confidence 5999999999999999999999886 8999988754433556666654 5655544432 3345678888888775
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCCcc
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV 148 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p~~ 148 (214)
.+.++++.||+||.+ ..+.++++.+.. .++++.+.++.++. ...+++|.+..+. ++++ +...+++.
T Consensus 101 -~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~ 177 (293)
T 1fxo_A 101 -NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSN-YAVTGLYF 177 (293)
T ss_dssp -TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSS-EEEEEEEE
T ss_pred -CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcEEEEEECCCCCCCC-eEEEEEEE
Confidence 244555559999998 578999987743 34566677777653 1234456654432 2232 44556889
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecCC-CCcccCCHHHHHHHHHHhh
Q 028081 149 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 149 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~-v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+.+.+..+ .... +..++++|....+.+.| ++.+ +.+.. .|+||+||+||..|+.+++
T Consensus 178 ~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 178 YDQQVVDIA-RDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp ECTTHHHHH-HHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred EcHHHHHHH-HhcCcccCCceeHHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 998776543 2221 12255666655555555 3443 34444 5999999999999998875
No 31
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.75 E-value=1.2e-16 Score=137.93 Aligned_cols=208 Identities=14% Similarity=0.172 Sum_probs=151.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH----hcCCcEEEecC--CccHHHHHHHHH
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE----KINVDLKFSLP--GKERQDSVYSGL 74 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~sv~~al 74 (214)
|++..||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+++.+. .++.++.++.+ ..+..++++.|+
T Consensus 26 m~~~~pK~l~pv~gkp~i~~~l~~~~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~ 103 (501)
T 3st8_A 26 MRSDTPKVLHTLAGRSMLSHVLHAIAKLA-PQRLIVVLGHDH-QRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGL 103 (501)
T ss_dssp GCCSSCGGGCEETTEEHHHHHHHHHHHHC-CSEEEEEECTTH-HHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHH
T ss_pred CCCCCCHHHeEECChhHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHH
Confidence 66778999999999999999999999986 899999999875 44555443 45666666543 223578899999
Q ss_pred hhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccE----EEecCCCceeeecCccc-------h
Q 028081 75 QEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRKT-------L 140 (214)
Q Consensus 75 ~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~ 140 (214)
..+.++ .+.++++.+|.||++.+.+..+++.++..++ .+.+.++.++. ...+++|.+..+++... .
T Consensus 104 ~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~i 183 (501)
T 3st8_A 104 SALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREI 183 (501)
T ss_dssp TTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHHC
T ss_pred HHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhccc
Confidence 988643 4679999999999999999999998876543 55666776652 22345677766654311 1
Q ss_pred hhhcC-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhhcc
Q 028081 141 WEMQT-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 141 ~~~~~-p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
..+++ -++|....|..++..... .++|++|...++...|..+..+..+. ...++++..++..++..++.+
T Consensus 184 ~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r 260 (501)
T 3st8_A 184 REVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR 260 (501)
T ss_dssp CEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred eeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence 12222 478888888777654332 23789998888888998888765443 456789999999888776644
No 32
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.75 E-value=8.9e-18 Score=134.59 Aligned_cols=199 Identities=11% Similarity=0.127 Sum_probs=131.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh------------------------cCCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~------------------------~~~~~~~ 59 (214)
++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++..+.+
T Consensus 22 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 99 (281)
T 3juk_A 22 TIPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNK-RSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSY 99 (281)
T ss_dssp TSCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTH-HHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEE
T ss_pred CCCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEE
Confidence 67999999999999999999999986 899999998765 445554432 2344444
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH----HHHHHHHHHHhcCC-eEEeeec--ccc----EEEec
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK----DVQKVLMDALRVGA-AVLGVPA--KAT----IKEAN 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~----~i~~~i~~~~~~~~-~i~~~~~--~~~----~~~~~ 126 (214)
+.. ..+..++++.|+..+. .+.++++.||. +++.+ .++++++.+...++ ++.+.++ .++ +...+
T Consensus 100 ~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~g~v~~~ 176 (281)
T 3juk_A 100 VRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGE 176 (281)
T ss_dssp EECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTTTGGGSEEEEEE
T ss_pred EecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechhhcccCCEEEec
Confidence 432 2345788999988885 36789999999 88888 89999998866543 3444443 222 11223
Q ss_pred C--CC--ceeeecCccc-----hhhhc-CCcccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcc
Q 028081 127 S--ES--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIK 193 (214)
Q Consensus 127 ~--~g--~v~~~~~r~~-----~~~~~-~p~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~ 193 (214)
+ +| .+..+.+... ..... .-++|+.+.| ..+.... ...+++++....+...| ++..+..+..++|
T Consensus 177 ~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l-~~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~d 254 (281)
T 3juk_A 177 WLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIF-EILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYD 254 (281)
T ss_dssp EEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEE
T ss_pred cCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHH-HHHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEc
Confidence 2 45 5544432110 00111 2367777655 3444321 12356776665555555 7877776678999
Q ss_pred cCCHHHHHHHHHHhhc
Q 028081 194 VTTPDDLLIAERILNL 209 (214)
Q Consensus 194 Idtp~Dl~~a~~~~~~ 209 (214)
|+||+||..|+..+..
T Consensus 255 Igt~~d~~~a~~~l~~ 270 (281)
T 3juk_A 255 CGSVEGYIEASNAYYK 270 (281)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 33
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.74 E-value=5.1e-18 Score=137.03 Aligned_cols=199 Identities=15% Similarity=0.225 Sum_probs=128.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|||||.|+++++..++ +++|+|++++...+.+++.+.. ++.++.++.. ..+..+++..|+..+.
T Consensus 23 ~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~ 101 (296)
T 1mc3_A 23 GVSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLN 101 (296)
T ss_dssp TSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHT
T ss_pred CCCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999999875 8999998864433556666653 5555544422 2334678888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEE----EecCCCceeeec-----CccchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIK----EANSESFVVRTL-----DRKTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~----~~~~~g~v~~~~-----~r~~~~~~~~p~ 147 (214)
+.++++++ ||+||.+ ..+..+++.+.. .++++.+.++.++.. ..+++|.+..+. ++++ +...+++
T Consensus 102 -~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy 177 (296)
T 1mc3_A 102 -GEPSCLVL-GDNIFFG-QGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSN-WAVTGLY 177 (296)
T ss_dssp -TSCEEEEE-TTEEEEC-SSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCS-EEEEEEE
T ss_pred -CCCEEEEE-CCccccc-cCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEEE
Confidence 23455555 9999988 578888887743 345566677776531 124445554332 1222 3344568
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEE-ecCC-CCcccCCHHHHHHHHHHhhc
Q 028081 148 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYIT-EGSY-TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v-~~~~-~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.|+.+.+..+ .... +..++++|....+.+.| ++.+. .+.. .|+||+||+||..|+.+++.
T Consensus 178 ~~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 178 FYDSKVVEYA-KQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp ECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred EEcHHHHHHH-HhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 8888765432 2211 11255666555555555 34433 3334 58999999999999988753
No 34
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.73 E-value=5e-17 Score=124.17 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.||+|++++|+|||+|+++++.. .+++|+|+++++. +.+ ..++..+... .++.++.+|+..|++.+. .+
T Consensus 23 ~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~----~~~~~~~v~~~~~~~~G~~~si~~~l~~~~--~~ 93 (201)
T 1e5k_A 23 VDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY----QASGLKVIEDSLADYPGPLAGMLSVMQQEA--GE 93 (201)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH----HTTSCCEECCCTTCCCSHHHHHHHHHHHCC--SS
T ss_pred CCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH----hhcCCeEEecCCCCCCCHHHHHHHHHHhCC--CC
Confidence 69999999999999999999984 3799999998764 222 2344433211 222578999999999885 58
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
++++++||+||+++++++++++.
T Consensus 94 ~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 94 WFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp EEEEEETTCTTCCTTHHHHHHHT
T ss_pred cEEEEeCCcCcCCHHHHHHHHhh
Confidence 89999999999999999999986
No 35
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.73 E-value=5.1e-17 Score=131.66 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=132.6
Q ss_pred Cceeeee--CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC-----------------C
Q 028081 6 PKQYLPL--LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP-----------------G 63 (214)
Q Consensus 6 ~K~l~~l--~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~-----------------~ 63 (214)
||+|+++ +|+|||.|+++++.+++ +++|+|++++...+.+.+.+.. .+.++.++.+ .
T Consensus 22 ~K~l~~ig~~g~pli~~~l~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (303)
T 3pnn_A 22 LKQLDGIGPGGDTIMDYSVYDAIRAG-FGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKP 100 (303)
T ss_dssp BCCCCCCSTTSCCHHHHHHHHHHHHT-CCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSC
T ss_pred CceEeEcCCCCeeHHHHHHHHHHHCC-CCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEeccccccccccccccccccc
Confidence 7999999 69999999999998875 8999999997743455554432 1334544432 2
Q ss_pred ccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh---cC--CeEEeeecccc----------EEEecCC
Q 028081 64 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR---VG--AAVLGVPAKAT----------IKEANSE 128 (214)
Q Consensus 64 ~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~---~~--~~i~~~~~~~~----------~~~~~~~ 128 (214)
.+..++++.|...+. +.++++.||. +++.+.++.+++.+.. .+ .++.+.++.++ +..++++
T Consensus 101 ~Gt~~al~~a~~~i~---~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~ 176 (303)
T 3pnn_A 101 WGTNHAVLMGRDAIR---EPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK 176 (303)
T ss_dssp CCHHHHHHTTTTTCC---SCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTT
T ss_pred CCcHHHHHHHHHhcC---CCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCC
Confidence 345778888877773 4467788999 7789889999998764 22 34555566544 2223445
Q ss_pred CceeeecCccch----------------------hhhc-CCcccChHHHHHHHHH--------HH---hcCCCCCcHHHH
Q 028081 129 SFVVRTLDRKTL----------------------WEMQ-TPQVIKPDLLKKGFEL--------VN---REGLEVTDDVSI 174 (214)
Q Consensus 129 g~v~~~~~r~~~----------------------~~~~-~p~~f~~~~l~~~~~~--------~~---~~~~~~~d~~~~ 174 (214)
|.+..+.++... ..+. .-++|+...+.. +.. .. ...++++|....
T Consensus 177 g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~-l~~~~~~~l~~~~~~~~~e~~l~d~i~~ 255 (303)
T 3pnn_A 177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDY-SEELFINFLNAHGQEPKSEFFIPFVVND 255 (303)
T ss_dssp SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHH-HHHHHHHHHHHHTTCSSCCCCHHHHHHH
T ss_pred CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHH-HHHHHHHHHHhcCCCcCCcEEhHHHHHH
Confidence 776544322110 0111 136777765433 322 11 123667877776
Q ss_pred HHhCCC-CeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 175 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 175 ~~~~g~-~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+...|. +|..+..+..++||+||+||..|++.++..
T Consensus 256 li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 256 LIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL 292 (303)
T ss_dssp HHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence 666775 888888778899999999999999988764
No 36
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=3.5e-17 Score=133.75 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=127.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh------------------------cCCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~------------------------~~~~~~~ 59 (214)
+.||+|++++|+|||+|+++++..++ +++|+|++++.. +.+.+.+.. .+..+.+
T Consensus 32 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~ 109 (323)
T 2pa4_A 32 TVPKELLPVVDTPGIELIAAEAAELG-ATRLAIITAPNK-AGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVP 109 (323)
T ss_dssp TSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEE
T ss_pred CCCceeeeECCEEHHHHHHHHHHhCC-CCEEEEEecCcH-HHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEE
Confidence 46999999999999999999999875 899999999864 344443321 2334444
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC-HHHHHHHHHHHHhcCCe-EEeeecc--cc--EE--Eec---
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAA-VLGVPAK--AT--IK--EAN--- 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~-~~~i~~~i~~~~~~~~~-i~~~~~~--~~--~~--~~~--- 126 (214)
+.. ..+..+++..|+..+..+.+.++++.||+|+ + +..++.+++.+...+++ +.+.++. +. .. ..+
T Consensus 110 ~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~d~~~ 188 (323)
T 2pa4_A 110 VTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADT 188 (323)
T ss_dssp EECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGGGGGGSEEEEEEECC
T ss_pred EeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEecccccCCccEEEeCCcc
Confidence 322 3345788888887775333558999999999 7 78999999988765543 3344442 11 11 112
Q ss_pred -CCC--ceeeecCcc-----chhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 127 -SES--FVVRTLDRK-----TLWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 127 -~~g--~v~~~~~r~-----~~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
++| .+..+.+.. .-+.. -.-+.|+.+.+ ..+..... ..+++++....+...|.++..+..+..++||
T Consensus 189 ~~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~-~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DI 267 (323)
T 2pa4_A 189 KDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF-DALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDL 267 (323)
T ss_dssp SSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH-HHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEEC
T ss_pred cCCCceeEEEEEECCCCccccccEEEEEEEEECHHHH-HHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeC
Confidence 233 444332211 00011 12256777644 33433211 1355666555555667888887776689999
Q ss_pred CCHHHHHHHHHHhh
Q 028081 195 TTPDDLLIAERILN 208 (214)
Q Consensus 195 dtp~Dl~~a~~~~~ 208 (214)
|||+||..++..+.
T Consensus 268 gt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 268 GNPGGYIPACVDFG 281 (323)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999985443
No 37
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.72 E-value=9.5e-17 Score=125.22 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.||+|++++|+|||+|+++++..++ + +|+|++..+. +.+.+ + +.+ .++.++.+|+..|++.+. +.+
T Consensus 22 ~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~---i~~~~---~--~~~-~~~~g~~~~i~~a~~~~~---~~~ 87 (232)
T 2dpw_A 22 GSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPG---LVPAP---A--LTL-PDRGGLLENLEQALEHVE---GRV 87 (232)
T ss_dssp SBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSS---CSSCC---S--EEE-CCCSSHHHHHHHHHHTCC---SEE
T ss_pred CCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHH---Hhhhc---C--eEe-cCCCCHHHHHHHHHHHcC---CCE
Confidence 6999999999999999999999886 5 8888876532 22211 2 344 556678999999998874 789
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeee
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVP 117 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~ 117 (214)
++++||+||+++++++++++ +.. .+.++++.+
T Consensus 88 lv~~~D~P~~~~~~i~~l~~-~~~~~~~~~~~~~ 120 (232)
T 2dpw_A 88 LVATGDIPHLTEEAVRFVLD-KAPEAALVYPIVP 120 (232)
T ss_dssp EEEETTCTTCCHHHHHHHHH-HCCSCSEEEEEEE
T ss_pred EEEeCCcccCCHHHHHHHHh-cCCCCCEEEEEee
Confidence 99999999999999999998 522 223444444
No 38
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.69 E-value=5.3e-16 Score=122.69 Aligned_cols=201 Identities=10% Similarity=0.063 Sum_probs=128.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhcCCc---EEEecC-CccHHHHHHHHHhh
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVD---LKFSLP-GKERQDSVYSGLQE 76 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~~~~---~~~~~~-~~~~~~sv~~al~~ 76 (214)
..+||+|++++|||||+|+++++.+...+++|+|++++... +.+.+....++.+ ...... ..+..++++.|+..
T Consensus 18 ~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~ 97 (255)
T 4evw_A 18 YTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEE 97 (255)
T ss_dssp CCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHH
T ss_pred CCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 36799999999999999999999983248999999987642 2344444445421 222222 23457899999988
Q ss_pred cc----cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---EEEecCCC--ceeeecCccch-hhhc-C
Q 028081 77 VD----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IKEANSES--FVVRTLDRKTL-WEMQ-T 145 (214)
Q Consensus 77 ~~----~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~---~~~~~~~g--~v~~~~~r~~~-~~~~-~ 145 (214)
+. ...+.++++.||. +++...+..+ ....++.+.+.++.++ ....+++| .|..+.+.... ..+. .
T Consensus 98 l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~---~~~~~~~i~~~~~~~p~yG~v~~d~~g~~~V~~i~EK~~~s~~~~~G 173 (255)
T 4evw_A 98 LAKQGVDYQGSITVFNIDT-FRPNFVFPDI---SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTG 173 (255)
T ss_dssp HHHTTCCCCSCEEECCTTE-ECTTCCCCGG---GGSSSEEEEEEECCSSCSCEEEESSTTCCBEEEEESSSCSSSEEEEE
T ss_pred HhhcccCCCCcEEEEeCCE-EEecchhHHH---hhcCCcEEEEEecCCCceeEEEECCCCCeEEEEEEeccCccCcEEEe
Confidence 82 1245688999999 6644333332 1223445666666554 12234456 67666543211 0111 2
Q ss_pred CcccChH-HHHHHHHHH----H----hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 146 PQVIKPD-LLKKGFELV----N----REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 146 p~~f~~~-~l~~~~~~~----~----~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+.|+.. .+.+++... . +.++|++|....+...|.++..+..+ ..++||+||+||..+++.-
T Consensus 174 iY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 174 LYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp EEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred EEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 3677764 344444321 1 23478999888888888899877654 6899999999999998753
No 39
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.69 E-value=3.7e-17 Score=137.12 Aligned_cols=191 Identities=15% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC---ccHHHHHHHHHhhcccC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG---KERQDSVYSGLQEVDFN 80 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~sv~~al~~~~~~ 80 (214)
+.||+|++++|||||+|+++++.+++ +++|+|+++++ + ++.+......+.++... .+...++ ....+
T Consensus 20 ~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i---~~~~~~~~~~i~~~~~~~~~~g~~~~l----~~~~~- 89 (401)
T 2ggo_A 20 TRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-N---KEYFEKKLKEISIVTQKDDIKGTGAAI----LSAKF- 89 (401)
T ss_dssp TSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-G---HHHHHHHCTTCEEEECCTTCCBSTTTG----GGCCC-
T ss_pred CCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-H---HHHhhccCCcEEEEeCCCCCCChHHHH----HHhcc-
Confidence 57999999999999999999999886 89999999876 3 33333322123343322 2223333 33221
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecC-----ccchhhhcCCcccCh
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLD-----RKTLWEMQTPQVIKP 151 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~-----r~~~~~~~~p~~f~~ 151 (214)
.+.++++.||+||.+++.++++++ ..+.++++.+..++. ...+++|.+..+.+ ++.++. -.-+.|+.
T Consensus 90 ~~~~lv~~~D~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~~~~~~~~~~-~Giy~~~~ 165 (401)
T 2ggo_A 90 NDEALIIYGDLFFSNEKEICNIIT---LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLIN-AGIYKLNS 165 (401)
T ss_dssp SSEEEEEETTEEESCSHHHHHHTT---CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEE-EEEEEEET
T ss_pred CCCEEEEeCccccccHHHHHHHHH---hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECCCCCCCcEEE-EEEEEEcH
Confidence 467889999999999999999886 234556666665532 11243455544322 111111 01135666
Q ss_pred HHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 152 DLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 152 ~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.+. .++... ...+++++....+ ..|.++..+..+..++|||||+||..++.++..+
T Consensus 166 ~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 166 DIFT-YLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225 (401)
T ss_dssp HHHH-HHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred HHHH-HhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence 5543 333321 1124455555555 5567888887777899999999999999887654
No 40
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.68 E-value=3.5e-16 Score=126.29 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-----------------------cCCcEEEe
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-----------------------INVDLKFS 60 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 60 (214)
++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. .+..+.++
T Consensus 34 ~~pK~ll~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~ 111 (297)
T 2ux8_A 34 AMPKEMLPVVDRPLIQYAVDEAVEAG-IEQMIFVTGRGK-SALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYV 111 (297)
T ss_dssp SSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEE
T ss_pred CCCceeeeECCeEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEE
Confidence 57999999999999999999999885 899999999764 445554332 23345444
Q ss_pred c--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC--HHHHHHHHHHHHhcCC-eEEeeec--ccc--EEEe--c--C
Q 028081 61 L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL--SKDVQKVLMDALRVGA-AVLGVPA--KAT--IKEA--N--S 127 (214)
Q Consensus 61 ~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~--~~~i~~~i~~~~~~~~-~i~~~~~--~~~--~~~~--~--~ 127 (214)
. ...+..++++.|+..+. .+.++++.||+|+ + +..++.+++.+.+.++ .+.+.+. .++ ...+ + +
T Consensus 112 ~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~~~~~ 188 (297)
T 2ux8_A 112 RQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQD 188 (297)
T ss_dssp ECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEEC-----------CCCCCCBC
T ss_pred eCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEEEecCcccCCCCCeEEecccC
Confidence 3 23345788888888775 3678999999995 5 6899999998765554 3333333 222 1112 1 1
Q ss_pred CC--ceeeecCccc-----hhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCC
Q 028081 128 ES--FVVRTLDRKT-----LWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTT 196 (214)
Q Consensus 128 ~g--~v~~~~~r~~-----~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idt 196 (214)
+| .+..+.+... -+.. -.-+.|+.+.+ ..+..... ..+++++....+...| ++..+..+..++||||
T Consensus 189 ~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~w~dIgt 266 (297)
T 2ux8_A 189 GVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVM-RILENQGKGAGGEIQLTDAMQRMIGDQ-PFHGVTFQGTRYDCGD 266 (297)
T ss_dssp SSEEEC--------------CCCEEEEEEECTHHH-HHHHHTC--------CCTTGGGGTTTS-CEEEEECSSEEEETTS
T ss_pred CCceeEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhhCCCCCCeeEHHHHHHHHHhcC-CEEEEEecceEEeCCC
Confidence 23 3332221100 0001 11256777644 44443221 1255666544443344 7887777668999999
Q ss_pred HHHHHHHHHHhh
Q 028081 197 PDDLLIAERILN 208 (214)
Q Consensus 197 p~Dl~~a~~~~~ 208 (214)
|+||..++..+.
T Consensus 267 ~~dl~~a~~~~~ 278 (297)
T 2ux8_A 267 KAGFIQANLAVA 278 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999985543
No 41
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.68 E-value=1.9e-16 Score=125.18 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=117.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccC
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~ 80 (214)
+++||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+..+.+.++..+..... ..+..+++..|+..++
T Consensus 44 ~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~~-- 119 (254)
T 1jyk_A 44 ENTPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-- 119 (254)
T ss_dssp SSSCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT--
T ss_pred CCCCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcH-HHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHCC--
Confidence 457999999999999999999999885 899999998754 2344444555544322221 2234677877776663
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---EE-EecCCCceeeecCccchhhhc-CCcccChH---
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IK-EANSESFVVRTLDRKTLWEMQ-TPQVIKPD--- 152 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~---~~-~~~~~g~v~~~~~r~~~~~~~-~p~~f~~~--- 152 (214)
+ +++++||.|+.. +.++.+++ .++.+++ ...++ .. ..+++|.+..+.++....... .-+.|+..
T Consensus 120 -~-~lv~~~D~~~~~-~~~~~~~~----~~~~~t~-~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~Giy~~~~~~~~ 191 (254)
T 1jyk_A 120 -N-SYVIDADNYLFK-NMFRNDLT----RSTYFSV-YREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAE 191 (254)
T ss_dssp -T-EEEEETTEEESS-CCCCSCCC----SEEEEEC-EESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHH
T ss_pred -C-EEEEeCCcccCH-HHHHHHHh----CCceEEE-EcccCCCCeEEEECCCCeEEEEEECCCCCcEEEEEEEEcHHHHH
Confidence 3 678999999998 65554432 2222222 22221 11 134456665543321111111 23567654
Q ss_pred HHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhhcc
Q 028081 153 LLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.|.++++..... .+|++|....+ ..+.++..+..+ ..+++||||+||..++.+++..
T Consensus 192 ~l~~~l~~~~~~~~~~e~~~~d~~~~l-~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 192 KIVSFIDKAYVSGEFVDLYWDNMVKDN-IKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp HHHHHHHHHHTTTCCTTCCTTHHHHTT-GGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCccccCHHHHHHHH-HhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence 333444433222 24556543222 345778776655 6799999999999999998753
No 42
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.67 E-value=2.1e-16 Score=120.64 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|||||+|+++++..+ +++|+|+++++.. .. .. +..+.... .+.++.+++..|++.+. .+.
T Consensus 30 ~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~---~~-~~--~~~~v~~~~~~~g~~~~i~~al~~~~--~~~ 99 (201)
T 2e8b_A 30 EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK---FS-FL--NAPVVLDEFEESASIIGLYTALKHAK--EEN 99 (201)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG---GG-GG--TCCEEECCCSSCCHHHHHHHHHHHCS--SSE
T ss_pred CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH---hh-cC--CceEEecCCCCCCcHHHHHHHHHHcC--CCC
Confidence 599999999999999999999876 7999999998753 11 11 43332212 34577999999998875 578
Q ss_pred EEEEcCCCCCCCHHHHHH-HH
Q 028081 84 VCIHDSARPLVLSKDVQK-VL 103 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~-~i 103 (214)
++++.||+||++++.+++ ++
T Consensus 100 ~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 100 VFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp EEEEETTCTTCCHHHHHHHHH
T ss_pred EEEEeCCcCcCCHHHHHHHHh
Confidence 999999999999999999 87
No 43
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.65 E-value=1.6e-15 Score=122.61 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=123.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLK 58 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~~ 58 (214)
.+||+|++++|+|||+|+++++..++ +++|+|++++.. +.+.+.+.. .+..+.
T Consensus 28 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~ 105 (302)
T 2e3d_A 28 AIPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_dssp SSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGGG-HHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEE
T ss_pred CCCceeeEECCeEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceE
Confidence 46999999999999999999999885 899999999754 445554432 133444
Q ss_pred Eec--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC---HH---HHHHHHHHHHhcCC-eEEeeecccc--EEEec-
Q 028081 59 FSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL---SK---DVQKVLMDALRVGA-AVLGVPAKAT--IKEAN- 126 (214)
Q Consensus 59 ~~~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~---~~---~i~~~i~~~~~~~~-~i~~~~~~~~--~~~~~- 126 (214)
++. ...+..++++.|+..+. .+.++++.||.|+-. +. +++++++.+.+.++ ++.+.+..+. ...+.
T Consensus 106 ~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~yg~v~~ 183 (302)
T 2e3d_A 106 QVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC 183 (302)
T ss_dssp EEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCCEEEEEEECSCGGGSEEEEC
T ss_pred EeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCCcEEEEEEccCCCCccEEEe
Confidence 432 23455788998888775 357899999999831 56 89999998765544 3344444332 11111
Q ss_pred -----CCC---ceeeecCccc-----hhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028081 127 -----SES---FVVRTLDRKT-----LWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY 189 (214)
Q Consensus 127 -----~~g---~v~~~~~r~~-----~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~ 189 (214)
++| .+..+.+... -+.. -.-+.|+.+.+ ..+..... ..+++++....+...| ++..+..+.
T Consensus 184 ~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~ 261 (302)
T 2e3d_A 184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKG 261 (302)
T ss_dssp TTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCS
T ss_pred cccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHH-HHHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCC
Confidence 234 3433221100 0001 11256776644 33322111 1245566554444456 888877777
Q ss_pred CCcccCCHHHHHHHHHH
Q 028081 190 TNIKVTTPDDLLIAERI 206 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~ 206 (214)
.++||+||+||..++..
T Consensus 262 ~~~DIgt~~d~~~a~~~ 278 (302)
T 2e3d_A 262 KSHDCGNKLGYMQAFVE 278 (302)
T ss_dssp CEEECSSHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHH
Confidence 89999999999999833
No 44
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.62 E-value=5.7e-15 Score=116.62 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=121.3
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC---CcEEE---------------------
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKF--------------------- 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~--------------------- 59 (214)
.+||+|++++|||||+|+++++.+++ +++|+|++++.. +.+++.+..+. ..+.+
T Consensus 22 ~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 99 (259)
T 1tzf_A 22 VKPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTL 99 (259)
T ss_dssp CCCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEE
T ss_pred CCCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHhhcccccccccccccccceeeeeccccccceee
Confidence 46999999999999999999999886 899999998775 45666554321 11211
Q ss_pred ec--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--E--EEecCCCceee
Q 028081 60 SL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVR 133 (214)
Q Consensus 60 ~~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~--~--~~~~~~g~v~~ 133 (214)
.. ...+..++++.|+..+. ..+.++++.||. + ....++++++.+...++.+++.+..++ . ...+ +|.+..
T Consensus 100 ~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~g~v~~~-~g~v~~ 175 (259)
T 1tzf_A 100 VDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-V-ADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ-AGQVRS 175 (259)
T ss_dssp EECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-E-ECCCHHHHHHHHHHHCCSEEEEEECCCCCSEEEEEE-TTEEEE
T ss_pred eecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-e-cccCHHHHHHHHHHhCCeEEEEEecCCCCccEEEEc-CCEEEE
Confidence 11 12345778888888774 246788899998 3 456789999887654443333333322 1 1123 455554
Q ss_pred ecCc--cchhhhc-CCcccChHHHHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 134 TLDR--KTLWEMQ-TPQVIKPDLLKKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 134 ~~~r--~~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
+.+. ...+..+ .-+.|+.+.+. .+. ..... .++....+.+.| ++..+..+..+.|||||+||..++..+..
T Consensus 176 ~~ekp~~~~~~~~~Giy~~~~~~l~-~l~---~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 176 FQEKPKGDGAMINGGFFVLNPSVID-LID---NDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp EEESCSCCSCCEECCCEEECGGGGG-GCC---STTCCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred EEecCCCCCceEEEEEEEeCHHHHH-hhc---ccccccHHHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 3321 1111122 24677766542 121 11122 244444443444 67766666689999999999999998865
Q ss_pred c
Q 028081 210 S 210 (214)
Q Consensus 210 ~ 210 (214)
.
T Consensus 251 ~ 251 (259)
T 1tzf_A 251 G 251 (259)
T ss_dssp T
T ss_pred C
Confidence 3
No 45
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.61 E-value=1.4e-14 Score=117.49 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=113.2
Q ss_pred CCCceeeee-CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC-cEEEe--cCCccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-DLKFS--LPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l-~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~sv~~al~~~~ 78 (214)
+.||+|+++ +|+|||+|+++++.++ +++|+|++++...+.+.+.+.. ++. .+.++ ....+...++..|+..+.
T Consensus 25 ~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~ 102 (308)
T 2qh5_A 25 LYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSD 102 (308)
T ss_dssp -CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHHHHHHTSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHHHHHHHhC
Confidence 479999999 6999999999999887 7999999987643456666655 554 44333 223455788888888774
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHH---HHhcCC--eEEeeecccc--EEE--ecCCCceeeecCccch---------
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMD---ALRVGA--AVLGVPAKAT--IKE--ANSESFVVRTLDRKTL--------- 140 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~---~~~~~~--~i~~~~~~~~--~~~--~~~~g~v~~~~~r~~~--------- 140 (214)
..+.++++.||.|+++++.++++++. +...++ .+.+.+..+. ... .+++|.+..+.+....
T Consensus 103 -~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~~ 181 (308)
T 2qh5_A 103 -KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKS 181 (308)
T ss_dssp -TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSSSSBCSEEEESCCHHHHHHHHHH
T ss_pred -CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECCCCEEEEEEECCChHHHHHHhhc
Confidence 23568999999999999999999986 333343 2333443322 122 2334555443321111
Q ss_pred --hhhc-CCcccChHHHHHHHHHHHhc--------------C----CCCC---cHHH----------HHHhCCCCeEEEe
Q 028081 141 --WEMQ-TPQVIKPDLLKKGFELVNRE--------------G----LEVT---DDVS----------IVEHLKHPVYITE 186 (214)
Q Consensus 141 --~~~~-~p~~f~~~~l~~~~~~~~~~--------------~----~~~~---d~~~----------~~~~~g~~i~~v~ 186 (214)
+..+ .-++|+.+.|.+.+...... . ++++ .+.. .+.+.|.++.+++
T Consensus 182 g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~ 261 (308)
T 2qh5_A 182 GGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVE 261 (308)
T ss_dssp CCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEE
T ss_pred CCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEE
Confidence 1111 23678776654444321100 0 2222 1111 1233567898888
Q ss_pred cCCCCcccCCHHHHHHHHHHh
Q 028081 187 GSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 187 ~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+..|.||+||+||..++...
T Consensus 262 ~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 262 LNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp CCSCCBC--------------
T ss_pred CCCceeCCCCHHHHHHHhhcC
Confidence 878899999999999887643
No 46
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.58 E-value=1.7e-14 Score=121.83 Aligned_cols=202 Identities=11% Similarity=0.063 Sum_probs=123.6
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC-------cEEEecC------C---c
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSLP------G---K 64 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~-------~~~~~~~------~---~ 64 (214)
.++||+|++++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++. .+.+... . .
T Consensus 31 ~~~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 108 (420)
T 3brk_X 31 DRRAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKA-HSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYE 108 (420)
T ss_dssp SSSCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCC
T ss_pred cCCcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCCh-HHHHHHHhhhhccccccccCCEEEeCccccccCCcccc
Confidence 4579999999999 99999999999885 899999999865 445555544 432 2334321 1 4
Q ss_pred cHHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeec
Q 028081 65 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTL 135 (214)
Q Consensus 65 ~~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~ 135 (214)
+..++++.|+..+.. ..+.+++++||+ +. ...++++++.+...++ .+.+.+. .++ ....+++|.+..+.
T Consensus 109 Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ 186 (420)
T 3brk_X 109 GTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFI 186 (420)
T ss_dssp CHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeE
Confidence 567889988887742 247899999999 54 4568899988765443 3444443 222 12224456665433
Q ss_pred Cccc----------hhhhc-CCcccChHHHHHHHHHHHh---cC-CCCCcHHHHHHhCCCCeEEEec-----------CC
Q 028081 136 DRKT----------LWEMQ-TPQVIKPDLLKKGFELVNR---EG-LEVTDDVSIVEHLKHPVYITEG-----------SY 189 (214)
Q Consensus 136 ~r~~----------~~~~~-~p~~f~~~~l~~~~~~~~~---~~-~~~~d~~~~~~~~g~~i~~v~~-----------~~ 189 (214)
+... .+... .-+.|+.+.|.+++..... +. .+.+|....+...| ++..+.. +.
T Consensus 187 ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~ 265 (420)
T 3brk_X 187 EKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEP 265 (420)
T ss_dssp ESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSC
T ss_pred eCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-cEEEEEeccccccccccCCC
Confidence 2110 01111 2367787766555432111 11 12234333333345 7776554 56
Q ss_pred CCcccCCHHHHHHHHHHhhc
Q 028081 190 TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.+++|+||+||..|+..+..
T Consensus 266 ~~~dI~t~~d~~~a~~~ll~ 285 (420)
T 3brk_X 266 YWRDVGTIDAYWQANIDLTD 285 (420)
T ss_dssp CEECCCSHHHHHHHHHHTTS
T ss_pred EEEECCCHHHHHHHHHHHhC
Confidence 79999999999999987654
No 47
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.58 E-value=3.9e-15 Score=115.89 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=68.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHH-HHhcCCcEEEecC-C--ccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET-KEKINVDLKFSLP-G--KERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~sv~~al~~~~~~~ 81 (214)
||+|++++|+|||+|+++++.++ +++|+|++ +.. +.+.+. .+.++..+.++.. + .++.+++..|+..+.
T Consensus 36 ~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~-~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~--- 108 (232)
T 2xme_A 36 PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRY-ADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE--- 108 (232)
T ss_dssp CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STT-HHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---
T ss_pred CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CCh-HHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---
Confidence 89999999999999999999876 79999999 544 233332 3445545555542 2 345888999988875
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLM 104 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~ 104 (214)
+.++++.||+|+ +++.++++++
T Consensus 109 ~~~lv~~~D~p~-~~~~~~~l~~ 130 (232)
T 2xme_A 109 DRFILTMGDHVY-SQQFIEKAVR 130 (232)
T ss_dssp SSEEEEETTEEE-CHHHHHHHTT
T ss_pred CCEEEEcCCccc-CHHHHHHHHh
Confidence 346778999998 9999888876
No 48
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.51 E-value=8.2e-13 Score=112.36 Aligned_cols=204 Identities=11% Similarity=0.012 Sum_probs=128.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC--C-------cEEEec--C-------
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN--V-------DLKFSL--P------- 62 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~--~-------~~~~~~--~------- 62 (214)
.++||+|++++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++ . .+.+.. .
T Consensus 39 ~~~pK~llpi~g~~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 116 (451)
T 1yp2_A 39 KKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDW 116 (451)
T ss_dssp TTSCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCC-HHHHHHHHHHCC--------CCEEEEEESCSSTTSCCC
T ss_pred cCCcceeeEECCcceeHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHhhhhhcccccccccCcEEEeccccccccccc
Confidence 4579999999999 99999999999885 899999999875 344444332 21 1 123321 1
Q ss_pred CccHHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceee
Q 028081 63 GKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVR 133 (214)
Q Consensus 63 ~~~~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~ 133 (214)
..+..++++.|+..+.. ..+.++++.||+ +.+ ..++++++.+...++ .+.+.+.. ++ ....+++|.+..
T Consensus 117 ~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~ 194 (451)
T 1yp2_A 117 FQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIE 194 (451)
T ss_dssp CCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEE
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEE
Confidence 23567889988887752 247899999999 544 568899988765544 23334442 11 222344566654
Q ss_pred ecCccch------------------------hhhc-CCcccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEec
Q 028081 134 TLDRKTL------------------------WEMQ-TPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEG 187 (214)
Q Consensus 134 ~~~r~~~------------------------~~~~-~p~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~v~~ 187 (214)
+.++... +... .-+.|+.+.|.++++........+ .+....+...|.++..+..
T Consensus 195 ~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~ 274 (451)
T 1yp2_A 195 FAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLY 274 (451)
T ss_dssp EEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEEC
T ss_pred EEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEe
Confidence 4321110 0111 136788777666554321111222 2333334455788888877
Q ss_pred CCCCcccCCHHHHHHHHHHhhcc
Q 028081 188 SYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 188 ~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+..|.+|+||+||..++..+..+
T Consensus 275 ~~~w~digt~~~l~~a~~~l~~~ 297 (451)
T 1yp2_A 275 DGYWEDIGTIEAFYNANLGITKK 297 (451)
T ss_dssp CSCCEECSSHHHHHHHHHGGGCS
T ss_pred CCEEEECCCHHHHHHHHHHHhcc
Confidence 77899999999999999877654
No 49
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.48 E-value=4.4e-13 Score=109.91 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=116.8
Q ss_pred CCCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCccHHHHHHHHHhhcccC
Q 028081 3 ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 3 ~~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
...||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+...+ ..+..-+.+.+...++..|...+. +
T Consensus 21 ~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~~gta~ai~~a~~~~~-~ 99 (336)
T 2x65_A 21 PETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLAD-D 99 (336)
T ss_dssp TTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSCCCHHHHHHHHHTTSC-T
T ss_pred CCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCCCCcHHHHHHHHHhhC-C
Confidence 357999999999 9999999999998745899999999864344555444322 133223333445677877776553 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHH----HHhcCCeE--Eeeecccc--EEEe--cCC-----CceeeecCccch-----
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMD----ALRVGAAV--LGVPAKAT--IKEA--NSE-----SFVVRTLDRKTL----- 140 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~----~~~~~~~i--~~~~~~~~--~~~~--~~~-----g~v~~~~~r~~~----- 140 (214)
.+.++++.||+|+.+++.++.+++. +.+.+..+ .+.|.... ..++ +++ +.+....+....
T Consensus 100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~ 179 (336)
T 2x65_A 100 DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKK 179 (336)
T ss_dssp TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHH
T ss_pred CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEEEEEEECCChHHHHH
Confidence 4679999999999999887766654 33324322 22333221 1111 211 334433221111
Q ss_pred ------hhhc-CCcccChHHHHHHHHHHHhc------CCCCCcH---HHHH------------HhCCCCeEEEecCCCCc
Q 028081 141 ------WEMQ-TPQVIKPDLLKKGFELVNRE------GLEVTDD---VSIV------------EHLKHPVYITEGSYTNI 192 (214)
Q Consensus 141 ------~~~~-~p~~f~~~~l~~~~~~~~~~------~~~~~d~---~~~~------------~~~g~~i~~v~~~~~~~ 192 (214)
+..+ .-+.|+.+.|.+.++..... ...-..+ ...+ .+.+.++.+++.+..|.
T Consensus 180 ~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~ 259 (336)
T 2x65_A 180 FVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWS 259 (336)
T ss_dssp HHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCB
T ss_pred HHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCc
Confidence 1111 23567776664444321110 0000011 1111 12357888888888999
Q ss_pred ccCCHHHHHHH
Q 028081 193 KVTTPDDLLIA 203 (214)
Q Consensus 193 ~Idtp~Dl~~a 203 (214)
||+|++||..+
T Consensus 260 DiGt~~~l~~~ 270 (336)
T 2x65_A 260 DLGNWSSVREI 270 (336)
T ss_dssp CCCSHHHHHHH
T ss_pred CCCCHHHHHhh
Confidence 99999999887
No 50
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.38 E-value=6.1e-13 Score=109.15 Aligned_cols=198 Identities=12% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcc--cC
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD--FN 80 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~--~~ 80 (214)
+.||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+.. .....-+.+.+...++..|.. +. ..
T Consensus 23 ~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--~~~i~e~~~~gta~ai~~a~~-l~~~~~ 99 (337)
T 2cu2_A 23 DRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--IRLLLEPLGRDTAGAVLLGVA-EALKEG 99 (337)
T ss_dssp TBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--SEEEEESSCCHHHHHHHHHHH-HHHHHT
T ss_pred CCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--CceEecCCCCCcHHHHHHHHH-HhccCC
Confidence 56999999999 99999999999987458999999987643333322221 122112223334566666655 42 12
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh---cCCeE--Eeeecccc----EEEecCC----CceeeecCccch-------
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR---VGAAV--LGVPAKAT----IKEANSE----SFVVRTLDRKTL------- 140 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~---~~~~i--~~~~~~~~----~~~~~~~----g~v~~~~~r~~~------- 140 (214)
.+.++++.||+|+.+++.++.+++.+.. .+..+ .+.|.... ....+++ +.+....+....
T Consensus 100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~ 179 (337)
T 2cu2_A 100 AERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI 179 (337)
T ss_dssp CSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH
T ss_pred CCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh
Confidence 4789999999999999988887765421 23322 22233221 1111211 334433321110
Q ss_pred ---hhhc-CCcccChHHHHHHHHHHHhc----------CCCCCcHHH---------HHHhCCCCeEEEecCCCCcccCCH
Q 028081 141 ---WEMQ-TPQVIKPDLLKKGFELVNRE----------GLEVTDDVS---------IVEHLKHPVYITEGSYTNIKVTTP 197 (214)
Q Consensus 141 ---~~~~-~p~~f~~~~l~~~~~~~~~~----------~~~~~d~~~---------~~~~~g~~i~~v~~~~~~~~Idtp 197 (214)
+..+ .-+.|+.+.|.+.++..... +..+++... .+.+.+.++.+++.+..|.||+|+
T Consensus 180 ~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~ 259 (337)
T 2cu2_A 180 RKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNW 259 (337)
T ss_dssp HTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCST
T ss_pred hcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCH
Confidence 1111 23678877664444332100 000000011 122346788888888889999999
Q ss_pred HHHHHHH
Q 028081 198 DDLLIAE 204 (214)
Q Consensus 198 ~Dl~~a~ 204 (214)
++|..+.
T Consensus 260 ~~l~~~~ 266 (337)
T 2cu2_A 260 RALERVF 266 (337)
T ss_dssp THHHHHH
T ss_pred HHHHHHh
Confidence 9998774
No 51
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=99.31 E-value=2.5e-11 Score=93.06 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred eCCeehHHHHHHHHhcCCCcCeE-EEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCC
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 90 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~i-iVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d 90 (214)
..|+|||.|++++++.+. ++.+ +|++++... .+. ++ +.++.+..+..+++.+|++.+ .+.++++.||
T Consensus 30 ~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~---~~~---~~--~~~v~~~~gl~~sl~~a~~~~---~~~vlvi~~D 97 (211)
T 2i5e_A 30 EFVELMLNQVISSLKGAG-IEQVDILSPSVYGL---EEM---TE--ARVLLDEKDLNEALNRYLKEA---EEPVLIVMAD 97 (211)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTC---SSC---CS--SEEEECCSCHHHHHHHHHHHC---CSCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHH---Hhh---cC--CEEEECCCCHHHHHHHHHHhc---CCCEEEEcCC
Confidence 568999999999999875 7899 898887542 111 23 333433355678888888776 3679999999
Q ss_pred CCCCCHHHHHHHHH
Q 028081 91 RPLVLSKDVQKVLM 104 (214)
Q Consensus 91 ~P~v~~~~i~~~i~ 104 (214)
+|++++++|+++++
T Consensus 98 ~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 98 LPLLSPEHIKEISS 111 (211)
T ss_dssp CTTCCHHHHHHHTT
T ss_pred cCCCCHHHHHHHHc
Confidence 99999999999987
No 52
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=98.93 E-value=4.7e-08 Score=76.33 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=68.7
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHH--HHHHHhcCCcEEEe-cCCccHHHHHHHHHhhc-ccCCCeEEEEcCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFS-LPGKERQDSVYSGLQEV-DFNSELVCIHDSA 90 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~sv~~al~~~-~~~~~~vl~~~~d 90 (214)
++|+.|+++++.++. .+.+++++++.....+ ..+. +..+.+. ..+.+..+++.+|+..+ ....+.|+++.+|
T Consensus 37 ~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~---~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD 112 (242)
T 3cgx_A 37 RHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL---GPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSD 112 (242)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH---CTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc---cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 579999999999875 5777777776543322 3332 2223333 34556788899998876 3346789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeeccc
Q 028081 91 RPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~ 120 (214)
+|++++++|+++++.+...+ + ...|..+
T Consensus 113 ~P~L~~~~l~~a~~~l~~~d-~-VigPa~d 140 (242)
T 3cgx_A 113 IPDYPCELVQKALNDLQHYD-A-AIGPAFD 140 (242)
T ss_dssp CTTCCHHHHHHHHHHTTTCS-E-EEEEBTT
T ss_pred CCCCCHHHHHHHHHHhccCC-e-EEEEcCC
Confidence 99999999999998776543 2 2345443
No 53
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=97.99 E-value=5.4e-05 Score=64.64 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcCC---CcC-eEEEEeC-CCchHHHHHHHHhc---CCcEEEe-----------
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCD-PSYSDIFEETKEKI---NVDLKFS----------- 60 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~~---~~~-~iiVv~~-~~~~~~~~~~~~~~---~~~~~~~----------- 60 (214)
||++.||.+++++ |||||+|++++++... ++. .++|+++ +.. +.+++.++++ |..+.++
T Consensus 106 mgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~-e~t~~~~~~~~~fg~~i~~f~Q~~~P~i~~d 184 (488)
T 2i5k_A 106 MGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTD-KDTEHLIKKYSANRIRIRSFNQSRFPRVYKD 184 (488)
T ss_dssp GTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTH-HHHHHHHGGGCSSSCEEEEECCCCEECEETT
T ss_pred CCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCH-HHHHHHHHhccccCceEEEEEeCccceEccc
Confidence 7888999999999 9999999999987652 111 3556555 443 5577766653 3333322
Q ss_pred -----------------cCCccHHHHHHHH---Hhhc-ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeee
Q 028081 61 -----------------LPGKERQDSVYSG---LQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVP 117 (214)
Q Consensus 61 -----------------~~~~~~~~sv~~a---l~~~-~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~ 117 (214)
+.|.+..-....+ +..+ ....++++++++|. |+...++. ++..+...+ .++.+++
T Consensus 185 ~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~~~~~~~a~~t~~v~~ 262 (488)
T 2i5k_A 185 SLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILNHMIETGAEYIMELTD 262 (488)
T ss_dssp TCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHHHHHHSCCSEEEEEEE
T ss_pred cceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHHHHHhcCCcEEEEEEE
Confidence 2233332222122 4444 22357999999999 88766665 445444433 3444555
Q ss_pred cccc
Q 028081 118 AKAT 121 (214)
Q Consensus 118 ~~~~ 121 (214)
..++
T Consensus 263 ~~~p 266 (488)
T 2i5k_A 263 KTRA 266 (488)
T ss_dssp CCGG
T ss_pred ecCC
Confidence 5443
No 54
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=97.13 E-value=0.0044 Score=52.59 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=38.7
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcCC---C--cCeEEEEeCCCchHHHHHHHHh---cCCcEE
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRMV---E--VKEIVVVCDPSYSDIFEETKEK---INVDLK 58 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~~---~--~~~iiVv~~~~~~~~~~~~~~~---~~~~~~ 58 (214)
||.+.||+++++. |||+|+|.++++++.. + +. ++|.+....-+.+.+.+++ +|.++.
T Consensus 93 Lg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip-~vimts~~t~e~t~~~f~~~~~fG~~I~ 158 (469)
T 2icy_A 93 MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVP-LVLMNSFNTHDDTHKIVEKYTNSNVDIH 158 (469)
T ss_dssp GTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCC-EEEEECTTTHHHHHHHHGGGTTSSSCEE
T ss_pred CCCCCCccccccCCCCCHHHHHHHHHHHHHHhcCCCcc-EEEEeCCCCHHHHHHHHHhcccCCceEE
Confidence 4667899999998 9999999999987652 1 34 4444444322556666654 454554
No 55
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=97.09 E-value=0.0035 Score=53.70 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=35.8
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhc----C----C---CcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSR----M----V---EVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~----~----~---~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||.++++ .|||+|+|.++.+++ + + .+..+++.+++.. +.+.+..++
T Consensus 116 Lg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~-e~t~~~f~~ 180 (505)
T 1jv1_A 116 LGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTM-ESTKEFFTK 180 (505)
T ss_dssp TSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTH-HHHHHHHHH
T ss_pred CCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCH-HHHHHHHHh
Confidence 566789999999 899999999998765 1 1 2555555555543 455665543
No 56
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=96.33 E-value=0.051 Score=45.10 Aligned_cols=117 Identities=12% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhc------------CCCcCeEEEEeCCCchHHHHHHHHh---cCC---cEE-
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSR------------MVEVKEIVVVCDPSYSDIFEETKEK---INV---DLK- 58 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~------------~~~~~~iiVv~~~~~~~~~~~~~~~---~~~---~~~- 58 (214)
||.+.||.+.++ .|||++++.++.+++ ...+.-++..++... +.+.+..++ +|. .+.
T Consensus 49 LG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~-e~t~~~f~~~~~fGl~~~~i~~ 127 (405)
T 3oc9_A 49 LGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETI-EEINNYFKEHQYFGLSSEQIHC 127 (405)
T ss_dssp TTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTH-HHHHHHHHHTGGGGSCTTSEEE
T ss_pred ccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccH-HHHHHHHHhCcccCCCccceEE
Confidence 577889999999 999999999988853 123554455444443 556666654 232 121
Q ss_pred ------------------------EecCCccHH-HHHHH-H-Hhhcc-cCCCeEEEEcCCCCCC---CHHHHHHHHHHHH
Q 028081 59 ------------------------FSLPGKERQ-DSVYS-G-LQEVD-FNSELVCIHDSARPLV---LSKDVQKVLMDAL 107 (214)
Q Consensus 59 ------------------------~~~~~~~~~-~sv~~-a-l~~~~-~~~~~vl~~~~d~P~v---~~~~i~~~i~~~~ 107 (214)
+.+.|.+.. .++.. + ++.+. ...+++++.+.|.+|. ++..+..+++ .
T Consensus 128 f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~--~ 205 (405)
T 3oc9_A 128 FPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDL--L 205 (405)
T ss_dssp EECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHH--T
T ss_pred EeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHH--c
Confidence 333444332 22211 1 22232 2357999999999988 4555444433 1
Q ss_pred hcCCeEEeeeccc
Q 028081 108 RVGAAVLGVPAKA 120 (214)
Q Consensus 108 ~~~~~i~~~~~~~ 120 (214)
+.+.++-+++..+
T Consensus 206 ~~d~~~kvv~k~~ 218 (405)
T 3oc9_A 206 QSEICIKIVKKGF 218 (405)
T ss_dssp TCSEEEEEEECCS
T ss_pred CCCEEEEEEECCC
Confidence 2334445555443
No 57
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=95.83 E-value=0.037 Score=47.36 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcCC-----CcCeEEEEeCCCchHHHHHHHH
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRMV-----EVKEIVVVCDPSYSDIFEETKE 51 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~~-----~~~~iiVv~~~~~~~~~~~~~~ 51 (214)
||.+.||.+++++ |||+|++.++++++.. .+ .+++.+....-+.+.+.++
T Consensus 89 Lg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 89 MGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp GTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHh
Confidence 4677899999999 9999999999998653 12 4555554332244555554
No 58
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=95.65 E-value=0.076 Score=45.25 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=36.7
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcCC-------------CcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRMV-------------EVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~~-------------~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||.+++++ |||+|+|.++++.... .+..+++.+++.. +.+.+.+++
T Consensus 117 Lg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~-~~t~~~~~~ 183 (486)
T 2yqc_A 117 LGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTR-NATESFFIE 183 (486)
T ss_dssp GTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGH-HHHHHHHHH
T ss_pred CCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCH-HHHHHHHhh
Confidence 4667899999999 9999999999998641 2555555555543 446666543
No 59
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.29 E-value=0.22 Score=37.88 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=62.7
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc--CCcEEEecCC----------ccHHHHHHHHHhhcc
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPG----------KERQDSVYSGLQEVD 78 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~sv~~al~~~~ 78 (214)
.++...|..+++.+.+...- -+|+||-+... +...++++.+ ..++.++... .+...+.-.|++...
T Consensus 10 yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~ 88 (255)
T 1qg8_A 10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE 88 (255)
T ss_dssp SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcC
Confidence 46678899999999764322 26777655443 4455555554 3345555432 233455556777664
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
.++++++|+|.- +.++.+..+++.+...
T Consensus 89 --g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 --GEYITYATDDNI-YMPDRLLKMVRELDTH 116 (255)
T ss_dssp --CSEEEEEETTEE-ECTTHHHHHHHHHHHC
T ss_pred --CCEEEEeCCCCc-cChHHHHHHHHHHHhC
Confidence 799999999984 5889999999988764
No 60
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=94.93 E-value=0.21 Score=37.46 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=60.5
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+....|..+++.+.+...- -+|+||-+... .+.+++....+. .+.++.. ..+...+.-.|++... .+++++
T Consensus 14 yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~~~n~G~~~a~N~g~~~a~--g~~i~~ 90 (240)
T 3bcv_A 14 YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIHKKNAGLGMACNSGLDVAT--GEYVAF 90 (240)
T ss_dssp SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEECCCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEECCCCChHHHHHHHHHHcC--CCEEEE
Confidence 36778999999999764321 26777654322 122333333332 3544433 2233555556777765 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 87 HDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+|+|. .+.++.++.+++.+...+
T Consensus 91 lD~Dd-~~~~~~l~~l~~~~~~~~ 113 (240)
T 3bcv_A 91 CDSDD-YVDSDMYMTMYNVAQKYT 113 (240)
T ss_dssp CCTTC-CCCTTHHHHHHHHHHHHT
T ss_pred ECCCC-cCCHHHHHHHHHHHHhcC
Confidence 99998 668999999999886633
No 61
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.63 E-value=0.26 Score=39.45 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=63.0
Q ss_pred eCCeehHHHHHHHHhcC--CCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-------ecCCccHHHHHHHHHhhcccCCC
Q 028081 12 LLGQPIALYSFYTFSRM--VEVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~--~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.+....|..+++.+.+. +...+|+||-+... +...++++.++..+.. .....+...+.-.|++... .+
T Consensus 57 yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd 133 (329)
T 3ckj_A 57 LDEEDTIGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASR--GD 133 (329)
T ss_dssp SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCC--CS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHHHHHhCC--CC
Confidence 36778899999999764 22357888765432 3345556666544321 1222334566677887765 68
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++++|+|.-.+.++.+..+++.+..
T Consensus 134 ~i~~lD~D~~~~~p~~l~~l~~~l~~ 159 (329)
T 3ckj_A 134 IVVFVDSDLINPHPMFVPWLVGPLLT 159 (329)
T ss_dssp EEEECCTTEESCCTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCcChHHHHHHHHHHHh
Confidence 99999999965789999999987644
No 62
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=93.77 E-value=0.43 Score=39.36 Aligned_cols=95 Identities=15% Similarity=0.011 Sum_probs=63.6
Q ss_pred eCCeehHHHHHHHHhc----CCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-------cCCccHHHHHHHHHhhcccC
Q 028081 12 LLGQPIALYSFYTFSR----MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-------LPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~----~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~sv~~al~~~~~~ 80 (214)
.+....|..+++.+.+ .+...+|+||-+... +...++++.++..+... ....+...++..|++...
T Consensus 103 yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~-- 179 (387)
T 3f1y_A 103 RNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR-- 179 (387)
T ss_dssp SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhcC--
Confidence 3566778888888754 232468888765443 33456666666443211 122344666777887764
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
.++++++|+|.=..+++.+.++++.+...
T Consensus 180 gd~i~~lDaD~~~~~p~~L~~l~~~l~~~ 208 (387)
T 3f1y_A 180 GDLVLYIDADTRDFRPQLAYGVLGPVLEV 208 (387)
T ss_dssp SSEEEECCTTCSSCCTHHHHTTHHHHHHS
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHHC
Confidence 79999999999657999999999988653
No 63
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.58 E-value=0.52 Score=39.59 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=62.8
Q ss_pred CCe-ehHHHHHHHHhcCCCcC---eEEEEeCCCc----hHHHHHHHHhcCCcEEEecCC--ccHHHHHHHHHhhcccCCC
Q 028081 13 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gk-pli~~~i~~~~~~~~~~---~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~sv~~al~~~~~~~~ 82 (214)
+.. ..|..+++++.+...-. +||||-+... .+.+++++..++..+.++... .+...+.-.|++... .+
T Consensus 39 N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd 116 (472)
T 1xhb_A 39 NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQ 116 (472)
T ss_dssp SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc--CC
Confidence 455 68999999987643222 7888765332 123444444444346555432 334555666777765 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+++++|+|. .++++.|..+++.+.....
T Consensus 117 ~i~flD~D~-~~~p~~L~~ll~~~~~~~~ 144 (472)
T 1xhb_A 117 VITFLDAHC-ECTAGWLEPLLARIKHDRR 144 (472)
T ss_dssp EEEEEESSE-EECTTCHHHHHHHHHHCTT
T ss_pred eEEEECCCe-EeCccHHHHHHHHHHhCCC
Confidence 999999998 4789999999998876543
No 64
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=91.97 E-value=0.49 Score=41.86 Aligned_cols=97 Identities=7% Similarity=0.001 Sum_probs=61.6
Q ss_pred eCCeehHHHHHHHHhcCC----CcCeEEEEeCCCc----hHHHHHHHHhcCCcEEEecCCc-cHHHHHHHHHhhccc--C
Q 028081 12 LLGQPIALYSFYTFSRMV----EVKEIVVVCDPSY----SDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVDF--N 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~----~~~~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~al~~~~~--~ 80 (214)
.++...|..+++++.+.. ...+||||=+... ...+.+.++..+..+.++..+. +...+.-.|++.+.. +
T Consensus 189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a~a~N~Gl~~A~g~~~ 268 (657)
T 4fix_A 189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTD 268 (657)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 478889999999987642 2457888754331 1123444443333566654432 223333445555421 4
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+++++|.|. .+.++.|.++++.+...
T Consensus 269 ~dyIlfLD~D~-~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 269 CQQILFMDDDI-RLEPDSILRVLAMHRFA 296 (657)
T ss_dssp CSEEEEECSSE-EECTHHHHHHHHHHHHB
T ss_pred CCEEEEECCCC-ccChhHHHHHHHHHHhC
Confidence 78999999999 67899999999988764
No 65
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=91.39 E-value=1.8 Score=39.22 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=61.2
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCcC---eEEEEeCCCc------------------hHHHHHHHHhcCCcEEEecCC-c
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEVK---EIVVVCDPSY------------------SDIFEETKEKINVDLKFSLPG-K 64 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~~---~iiVv~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~ 64 (214)
+.+.-+.+ ++..+++++.+...-+ +|+|+.+... .+.+++.+++++..+...... .
T Consensus 145 iIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~ 224 (802)
T 4hg6_A 145 LVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEH 224 (802)
T ss_dssp EEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCS
T ss_pred EEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCC
Confidence 44544443 5689999997654322 5777765431 012333444555433222222 2
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 65 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 65 ~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+...++-.|++... .|+++++|+|. .++++.++++++.+.+.
T Consensus 225 GKa~alN~gl~~a~--gd~Il~lDaD~-~~~pd~L~~lv~~~~~d 266 (802)
T 4hg6_A 225 AKAGNMSAALERLK--GELVVVFDADH-VPSRDFLARTVGYFVED 266 (802)
T ss_dssp HHHHHHHHHHHHCC--CSEEEECCTTE-EECTTHHHHHHHHHHHS
T ss_pred cchHHHHHHHHhcC--CCEEEEECCCC-CcChHHHHHHHHHHhcC
Confidence 34556677887765 79999999999 66899999999988543
No 66
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=90.82 E-value=1.4 Score=37.32 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=62.1
Q ss_pred eeeeCC-ee-hHHHHHHHHhcCCCcC---eEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccCC
Q 028081 9 YLPLLG-QP-IALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l~g-kp-li~~~i~~~~~~~~~~---~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~ 81 (214)
+.+.-+ .. .|..+++.+.+...-. +||||-+...-+.+......+. .+.++.. ..+...+.-.|++... .
T Consensus 71 IIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--g 147 (501)
T 2ffu_A 71 VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRREGLMRSRVRGADAAQ--A 147 (501)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSCCHHHHHHHHHHHHCC--S
T ss_pred EEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCCcCHHHHHHHHHHhcC--C
Confidence 344434 34 8899999887543222 7888755432122333333333 4555542 2234555666777765 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++|+|. .++++.|..+++.+.....
T Consensus 148 d~i~flD~D~-~~~p~~L~~ll~~~~~~~~ 176 (501)
T 2ffu_A 148 KVLTFLDSHC-ECNEHWLEPLLERVAEDRT 176 (501)
T ss_dssp SEEEECCSSE-EECTTCHHHHHHHHHHCTT
T ss_pred CEEEEECCCc-ccCccHHHHHHHHHHhCCC
Confidence 8999999999 4689999999998876544
No 67
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=87.72 E-value=9.3 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=33.7
Q ss_pred ccHHHHHHHHH----hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 64 KERQDSVYSGL----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 64 ~~~~~sv~~al----~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.+...++..|+ ... ..|+++++|||.=-.+|+.|.++++...+
T Consensus 74 ~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~ 120 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADF 120 (397)
T ss_dssp SSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHc
Confidence 45677888888 544 37899999999744689999999987754
No 68
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=87.18 E-value=1.7 Score=37.59 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=61.9
Q ss_pred eeeCC-e-ehHHHHHHHHhcCCCcC---eEEEEeCCCc----hHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 10 LPLLG-Q-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 10 ~~l~g-k-pli~~~i~~~~~~~~~~---~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+.-+ . ..|..+++.+.+...-. +||||-+... .+.+++++..+. .+.++.. ..+...+.-.|++...
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~ 196 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVAT 196 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44444 4 58889999887543222 7888755332 123444444432 4555543 2334566666777765
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++++|+|.=+ +++.|..+++.+.....
T Consensus 197 --gd~i~fLD~D~~~-~p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 197 --GDVITFLDSHCEA-NVNWLPPLLDRIARNRK 226 (570)
T ss_dssp --SSEEEECCSSEEE-CTTCSHHHHHHHHHCTT
T ss_pred --CCEEEEEcCCccc-cccHHHHHHHHHHhCCC
Confidence 6899999999944 88999999988866443
No 69
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=86.78 E-value=3 Score=36.24 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=60.8
Q ss_pred CCeehHHHHHHHHhcCC--CcCeEEEEeCCCchHHHHHHHHhcC--CcEEEec--C-CccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMV--EVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSL--P-GKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~--~~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+....|..+++++.... .--+|+|+-+... +...+.++.+. ..+.++. + +.+...+.-.|++... .++++
T Consensus 103 n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~~a~--g~~v~ 179 (625)
T 2z86_A 103 NRAKILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAK--YNYVA 179 (625)
T ss_dssp SCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHHHCC--SSEEE
T ss_pred CcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHHhCC--cCEEE
Confidence 56678999999997652 1246777755332 22445555542 1343332 2 2234555666777764 78999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++|+|.=+ +++.+..+++.+.....
T Consensus 180 ~lD~D~~~-~~~~l~~~~~~~~~~~~ 204 (625)
T 2z86_A 180 ILDCDMAP-NPLWVQSYMELLAVDDN 204 (625)
T ss_dssp EECTTEEE-CTTHHHHHHHHHHHCTT
T ss_pred EECCCCCC-CHHHHHHHHHHHhcCCc
Confidence 99999954 89999999998876443
No 70
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=85.21 E-value=5 Score=34.79 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=58.9
Q ss_pred eCCeehHHHHHHHHhcCCCcC-eEEEEeCCCc---hHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSY---SDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~-~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.++...|..+++.+.+....+ +|+|+-+... .+.+++....+. .+.++.. ..+...+.-.|++... .+++++
T Consensus 384 yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~-~i~~~~~~n~G~~~a~n~g~~~a~--g~~i~~ 460 (625)
T 2z86_A 384 YNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHP-RVRFISQKNKGIGSASNTAVRLCR--GFYIGQ 460 (625)
T ss_dssp SSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCT-TEEEEEECCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCC-cEEEEeCCCCCHHHHHHHHHHhcC--CCEEEE
Confidence 477889999999997643222 6666644322 122333222222 3444322 2234555666777664 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|. .+.++.+..+++.+...
T Consensus 461 ld~D~-~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 461 LDSDD-FLEPDAVELCLDEFRKD 482 (625)
T ss_dssp CCTTC-EECTTHHHHHHHHHHHC
T ss_pred ECCCc-ccChhHHHHHHHHHHhC
Confidence 99998 56999999999887653
No 71
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=78.52 E-value=2.4 Score=33.50 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=58.4
Q ss_pred CeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc---CCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCC
Q 028081 14 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 90 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d 90 (214)
-..+|...++...+++.+++|+|+=+.....--....... +.++.+..+....+..=..-...+ ..+.||.+|-|
T Consensus 39 R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p~~~i--~T~AVLslDDD 116 (293)
T 1omz_A 39 RTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEV--ETNAVLMVDDD 116 (293)
T ss_dssp CHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTC--CSSEEEEECTT
T ss_pred ccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccCCCccC--CcCEEEEEcCC
Confidence 3567888899999999999999998764210001111222 356666554322111000011112 36899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 028081 91 RPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~ 110 (214)
. .++.+.|+..++..++..
T Consensus 117 v-~l~~~el~faF~vWr~~P 135 (293)
T 1omz_A 117 T-LISAQDLVFAFSIWQQFP 135 (293)
T ss_dssp E-EECHHHHHHHHHHHTTST
T ss_pred C-CCCHHHHHHHHHHHHHCc
Confidence 8 889999999998887653
No 72
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=76.90 E-value=14 Score=29.83 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=60.4
Q ss_pred eeeeeCCeehHHHHHHHHhcCCC-c--CeEEEEeCCCchHHHHHHHHhcCCcEEEe--cC-C------c--c------HH
Q 028081 8 QYLPLLGQPIALYSFYTFSRMVE-V--KEIVVVCDPSYSDIFEETKEKINVDLKFS--LP-G------K--E------RQ 67 (214)
Q Consensus 8 ~l~~l~gkpli~~~i~~~~~~~~-~--~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~-~------~--~------~~ 67 (214)
.++...++|=+..+++++.+... . ..|+|+-+... +.++++++.++.++..+ ++ + . + -.
T Consensus 6 ViI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~-~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia 84 (343)
T 1fo8_A 6 ILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGH-EETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIA 84 (343)
T ss_dssp EEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTC-HHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCC-HHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHh
Confidence 34556677778889999876531 2 35777665544 56778887765444332 11 0 0 0 02
Q ss_pred HHHHHHHhhccc--CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 68 DSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 68 ~sv~~al~~~~~--~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
.++..|+..+-. ..+.+++++.|+ .++|+-++.+.+.+.
T Consensus 85 ~h~~~al~~vf~~~~~~~vIiLEDDl-~~spdF~~y~~~~l~ 125 (343)
T 1fo8_A 85 RHYRWALGQIFHNFNYPAAVVVEDDL-EVAPDFFEYFQATYP 125 (343)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEEETTE-EECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCEEEEEcCCC-eECHHHHHHHHHHHH
Confidence 445556654422 478999999999 778988877665543
No 73
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=69.03 E-value=47 Score=27.29 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhc-ccCCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 66 RQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 66 ~~~sv~~al~~~-~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
...++..|+... ....++|+++|||- ..|..+..+++.+.
T Consensus 145 KG~Am~aGl~~A~~~~gd~Vv~~DaDl--~iP~~v~~~~kgy~ 185 (394)
T 2zu9_A 145 KGEGMLVGLLLAKAIGAEYVGFVDADN--YIPGAVNEYVKDYA 185 (394)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCSCB--SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCEEEEEeCCC--CCHHHHHHHHHHhh
Confidence 356677888766 11368999999999 45777777776554
No 74
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=54.04 E-value=21 Score=25.20 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCCcEEEe
Q 028081 21 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDLKFS 60 (214)
Q Consensus 21 ~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~~~~~~ 60 (214)
+++++..++.+|.+++++++.+.....+.++. +|..+..+
T Consensus 99 aiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~ 139 (165)
T 2qip_A 99 TLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVY 139 (165)
T ss_dssp HHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHhhccCCEEEEEECChhHHHHHHHHHHHcCcEEEEE
Confidence 44544434567888888887764334444555 57666544
No 75
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=51.24 E-value=3.2 Score=36.99 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHh----cCCcEEEecCC--ccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEK----INVDLKFSLPG--KERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~sv~~al~~~~~~~~~v 84 (214)
.++...|..+++.+.+...- -+|+||-+... +...++++. ++..+.++... .+...+.-.|++... .+++
T Consensus 11 yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgSt-D~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A~--gdyI 87 (729)
T 3l7i_A 11 YNAEEYITGCLESIKQQRTQDFNLIIVNDGST-DQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVE--TPYF 87 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC-CcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhcc--CCEE
Confidence 35567788888888654311 25666543221 222333333 23344444321 122333444665554 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|--+ .++.++.+++.+..
T Consensus 88 ~flD~Dd~~-~p~~l~~l~~~l~~ 110 (729)
T 3l7i_A 88 MFLDADDEL-ASYAITFYLEKFNN 110 (729)
T ss_dssp ------------------------
T ss_pred EEECCCCCC-ChhHHHHHHHHhcC
Confidence 999999955 89999999988763
No 76
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=48.55 E-value=16 Score=31.38 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=36.2
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcC----CCcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~----~~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||.++++. ||+++++.++.++.. +..=..+|-|.....+.+++..++
T Consensus 141 LG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k 197 (528)
T 3r3i_A 141 MGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQK 197 (528)
T ss_dssp TTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGG
T ss_pred cCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHh
Confidence 6788899999996 999999999998754 211245666665543555555554
No 77
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=43.66 E-value=13 Score=32.62 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhcC
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKIN 54 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~~ 54 (214)
||.+.||.+++++ |++++++.++.+++..+. =..+|-|+....+.+.+.+++||
T Consensus 128 LG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fg 185 (630)
T 3ogz_A 128 LGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQ 185 (630)
T ss_dssp GTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTT
T ss_pred cCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhC
Confidence 5777899999997 999999999998753211 24566666654466777777665
No 78
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=38.13 E-value=99 Score=21.48 Aligned_cols=65 Identities=3% Similarity=0.083 Sum_probs=38.6
Q ss_pred HHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC-CCeEEEEcCCCC
Q 028081 21 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHDSARP 92 (214)
Q Consensus 21 ~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~-~~~vl~~~~d~P 92 (214)
+++.+++.+ + ++.|+|+... ..++..++.++.. +..+.......+..+++.+.-+ .+.+++ ||.+
T Consensus 47 ~l~~L~~~g-~-~~~i~T~~~~-~~~~~~~~~lgi~--~~~~~~~k~~~l~~~~~~~~~~~~~~~~v--GD~~ 112 (176)
T 3mmz_A 47 GIAALRKSG-L-TMLILSTEQN-PVVAARARKLKIP--VLHGIDRKDLALKQWCEEQGIAPERVLYV--GNDV 112 (176)
T ss_dssp HHHHHHHTT-C-EEEEEESSCC-HHHHHHHHHHTCC--EEESCSCHHHHHHHHHHHHTCCGGGEEEE--ECSG
T ss_pred HHHHHHHCC-C-eEEEEECcCh-HHHHHHHHHcCCe--eEeCCCChHHHHHHHHHHcCCCHHHEEEE--cCCH
Confidence 577777664 3 6777777665 4566777777766 4444455566666666655311 244444 5543
No 79
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=37.84 E-value=57 Score=27.59 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCCCCCceeeee-CCeehHHHHHHHHhcC----CCcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPL-LGQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l-~gkpli~~~i~~~~~~----~~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||-+.++ .|+++++..+++++.. +..=..+|-|+....+.+.+..++
T Consensus 90 LG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k 146 (484)
T 3gue_A 90 MGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRK 146 (484)
T ss_dssp GTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGG
T ss_pred cCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHh
Confidence 678889999999 9999999999888652 111245677766544556666554
No 80
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=31.36 E-value=1.6e+02 Score=21.70 Aligned_cols=84 Identities=13% Similarity=0.009 Sum_probs=47.0
Q ss_pred CCeehHHHHHHHHhcCCCc--CeEEEEeCCCchHHHHHHHHhcCCcEEEecCC--ccH---HHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMVEV--KEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~--~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~sv~~al~~~~~~~~~vl 85 (214)
|.-+....+++++.+.. . +-+.|+++.+. ....+.++.+|.++..+... .++ -..+...++... .|+ +
T Consensus 10 G~g~~~~~~l~~l~~~~-~~~~i~~Vvs~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dl-i 84 (216)
T 2ywr_A 10 GRGSNLQAIIDAIESGK-VNASIELVISDNPK-AYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKG--VEL-V 84 (216)
T ss_dssp SCCHHHHHHHHHHHTTS-SCEEEEEEEESCTT-CHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTT--CCE-E
T ss_pred CCcHHHHHHHHHHHhCC-CCCeEEEEEeCCCC-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcC--CCE-E
Confidence 44567788888887643 3 33456666554 34567778888776543221 111 123445555443 454 3
Q ss_pred EEcCCCCCCCHHHHHH
Q 028081 86 IHDSARPLVLSKDVQK 101 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~ 101 (214)
++-+=+-+++++.++.
T Consensus 85 v~a~y~~il~~~~l~~ 100 (216)
T 2ywr_A 85 VLAGFMRILSHNFLKY 100 (216)
T ss_dssp EESSCCSCCCHHHHTT
T ss_pred EEeCchhhCCHHHHhh
Confidence 4556666777766543
No 81
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=31.35 E-value=44 Score=22.39 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCC-eEEEEcCCCC
Q 028081 18 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE-LVCIHDSARP 92 (214)
Q Consensus 18 i~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~-~vl~~~~d~P 92 (214)
|...++.++.... +.++||=+..+ +.. +.++|..-.+...|+.- ... ++.+....+ .+++.|+|.+
T Consensus 8 l~e~~~~l~~~s~-~~vIvVEGk~D---~~~-L~~~g~~~iI~t~Gtal-~~~---i~~l~~~~~~VIIltD~D~a 74 (118)
T 1t6t_1 8 LSEWIKELKKASR-EAVILVEGKND---KKA-LSKFSIKNVIDLSGKRY-ADV---VDMLEGKWEKVILLFDLDTH 74 (118)
T ss_dssp HHHHHHHHHHHTT-TSEEEESSHHH---HHH-HHTTTCCCEEECTTSCH-HHH---HHHHTTTCSEEEECCCSSHH
T ss_pred HHHHHHHHHHhcC-CcEEEEEChHH---HHH-HHHhCcCcEEEECCCcH-HHH---HHHHHhCCCEEEEEECCChh
Confidence 4445677766543 67888866543 222 34555443344444432 222 222322245 6666788775
No 82
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=30.45 E-value=2.2e+02 Score=23.10 Aligned_cols=88 Identities=8% Similarity=0.064 Sum_probs=50.7
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHH----HHHHHhcCCcEEE-------ecCCccHHHHHHHHHhhc-c-c-CC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIF----EETKEKINVDLKF-------SLPGKERQDSVYSGLQEV-D-F-NS 81 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~sv~~al~~~-~-~-~~ 81 (214)
+.+++.++++- .+ -..++|-++...-... ......+. ++.+ .-||-++..+.+++++.+ . . +.
T Consensus 97 ~~l~rll~~ly-~p-~n~y~IHvD~ks~~~~~~~~~~~~~~f~-NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w 173 (391)
T 2gak_A 97 EMLDRLLRAIY-MP-QNFYCIHVDRKAEESFLAAVQGIASCFD-NVFVASQLESVVYASWTRVKADLNCMKDLYRMNANW 173 (391)
T ss_dssp HHHHHHHHHHC-CT-TSEEEEEECTTSCHHHHHHHHHHHHTCT-TEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHh-CC-CCeEEEEEeCCCCHHHHHHHHHHHhcCC-CEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCC
Confidence 45555555553 34 2566777776532212 22222332 3433 346667777666666544 2 1 45
Q ss_pred Ce-EEEEcCCCCCCCHHHHHHHHHHH
Q 028081 82 EL-VCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 82 ~~-vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
++ +++-..|.|+.+.+.|.+.++..
T Consensus 174 ~yfilLSgsD~PLkt~~~i~~~l~~~ 199 (391)
T 2gak_A 174 KYLINLCGMDFPIKTNLEIVRKLKCS 199 (391)
T ss_dssp CEEEEEETTCEESSCHHHHHHHHHHT
T ss_pred CEEEEecCCCccccCHHHHHHHHHhc
Confidence 65 45556699999999998888765
No 83
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=30.20 E-value=1.7e+02 Score=21.80 Aligned_cols=85 Identities=15% Similarity=0.010 Sum_probs=49.1
Q ss_pred CCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC--ccH---HHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~sv~~al~~~~~~~~~vl~ 86 (214)
|.-..+..+++++.+.. ..+-+.|+++.+. ....+.++.+|.++..+... .++ -..+...++... .|+ ++
T Consensus 31 G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dl-iv 106 (229)
T 3auf_A 31 GSGTNLQAILDGCREGRIPGRVAVVISDRAD-AYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYG--VDL-VC 106 (229)
T ss_dssp SCCHHHHHHHHHHHTTSSSEEEEEEEESSTT-CHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTT--CSE-EE
T ss_pred CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCc-hHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcC--CCE-EE
Confidence 55667788888887642 1333456666543 34567778888776543211 112 133445555544 565 45
Q ss_pred EcCCCCCCCHHHHHH
Q 028081 87 HDSARPLVLSKDVQK 101 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~ 101 (214)
+-+=+-+++++.++.
T Consensus 107 ~agy~~IL~~~~l~~ 121 (229)
T 3auf_A 107 LAGYMRLVRGPMLTA 121 (229)
T ss_dssp ESSCCSCCCHHHHHH
T ss_pred EcChhHhCCHHHHhh
Confidence 557777888877654
No 84
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=26.90 E-value=2.3e+02 Score=22.23 Aligned_cols=100 Identities=5% Similarity=-0.047 Sum_probs=55.1
Q ss_pred eeCCeehHHHHHHHHhc--CCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-----CCccHHHHHHHHHhhcccCCCe
Q 028081 11 PLLGQPIALYSFYTFSR--MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 11 ~l~gkpli~~~i~~~~~--~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sv~~al~~~~~~~~~ 83 (214)
--+|..-+..++..+.. .+ -|+|++..+.-. . ....++..|.++..+. ++.-..+.+..+++.+......
T Consensus 102 t~G~~~al~~~~~~l~~~~~~-gd~Vlv~~p~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 178 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFFKF-SRDVYLPKPSWG-N-HTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSII 178 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCTT-CCEEEEEESCCT-T-HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEE
T ss_pred cCcchHHHHHHHHHHHHhccC-CCEEEEcCCCch-h-HHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEE
Confidence 45666677766666542 12 266666554322 2 3444555665544332 1111245566666654323345
Q ss_pred EEEEcCCCCC---CCHHHHHHHHHHHHhcCCeE
Q 028081 84 VCIHDSARPL---VLSKDVQKVLMDALRVGAAV 113 (214)
Q Consensus 84 vl~~~~d~P~---v~~~~i~~~i~~~~~~~~~i 113 (214)
+++..+..|. .+.+.++++++.+++++..+
T Consensus 179 v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 211 (401)
T 7aat_A 179 LLHACAHNPTGVDPRQEQWKELASVVKKRNLLA 211 (401)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEE
Confidence 5555555565 57888999988877766543
No 85
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.58 E-value=72 Score=20.32 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 44 DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
..+++++++.|.++.-+..+.+.-+|+..-++.. +..+|++.-- +.+--++.+.....-++
T Consensus 16 rkfkdiikkngfkvrtvrspqelkdsieelvkky--nativvvvvd-----dkewaekairfvkslga 76 (134)
T 2l69_A 16 RKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKY--NATIVVVVVD-----DKEWAEKAIRFVKSLGA 76 (134)
T ss_dssp HHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCC--CCEEEEEECS-----SHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHh--CCeEEEEEEc-----cHHHHHHHHHHHHhcCC
Confidence 3467777887878877766554455554433322 2445554433 34445566655544444
No 86
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.69 E-value=2.2e+02 Score=20.96 Aligned_cols=85 Identities=12% Similarity=-0.075 Sum_probs=47.3
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
++-+.+.-.++++.+-.. .+=+.|+++... ....+.++++|.++.......-....+...++... .|. +++-+=+
T Consensus 17 G~gsnl~all~~~~~~~~~~~I~~Vis~~~~-a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~--~Dl-ivlagy~ 92 (215)
T 3kcq_A 17 GRGSNLEALAKAFSTEESSVVISCVISNNAE-ARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHD--VDL-VCLAGFM 92 (215)
T ss_dssp SCCHHHHHHHHHTCCC-CSEEEEEEEESCTT-CTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTT--CSE-EEESSCC
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcc-hHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhC--CCE-EEEeCCc
Confidence 445677778888754321 233445555443 22345677888776544321111244556666554 565 4555777
Q ss_pred CCCCHHHHHH
Q 028081 92 PLVLSKDVQK 101 (214)
Q Consensus 92 P~v~~~~i~~ 101 (214)
-+++++.++.
T Consensus 93 ~IL~~~~l~~ 102 (215)
T 3kcq_A 93 SILPEKFVTD 102 (215)
T ss_dssp SCCCHHHHHH
T ss_pred eEeCHHHHhh
Confidence 7888877655
No 87
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=22.19 E-value=55 Score=17.84 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.6
Q ss_pred ccCCHHHHHHHHHHhhcc
Q 028081 193 KVTTPDDLLIAERILNLS 210 (214)
Q Consensus 193 ~Idtp~Dl~~a~~~~~~~ 210 (214)
.=..|+|+..|+.+++..
T Consensus 18 ~s~~P~Dlq~AN~LiK~m 35 (45)
T 1j2j_B 18 KSSHPEDLRAANKLIKEM 35 (45)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred HcCChhhHHHHHHHHHHH
Confidence 345789999999887643
No 88
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=22.11 E-value=2e+02 Score=20.41 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=37.2
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028081 46 FEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 113 (214)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i 113 (214)
+.++++..+.+-.++.|-.+-.-....++.+....++.+++.||...+ +++.-+..++.++..++.+
T Consensus 116 L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~-~~~~~~~al~~m~~~G~~i 182 (186)
T 3gbc_A 116 LLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGV-SADTTVAALEEMRTASVEL 182 (186)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECS-CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCC-CHHHHHHHHHHHHHcCCEE
Confidence 345555555543344443332111122333333346778888888866 6777777888777666543
No 89
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=21.18 E-value=2.1e+02 Score=19.84 Aligned_cols=66 Identities=5% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC-CCeEEEEcCCCC
Q 028081 21 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHDSARP 92 (214)
Q Consensus 21 ~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~-~~~vl~~~~d~P 92 (214)
.++.+++.+ -.++|+|+... ..+...++.++... +..++......+..+++.+.-+ .+.+++ ||.+
T Consensus 61 ~l~~L~~~g--~~v~ivT~~~~-~~~~~~l~~lgl~~-~~~~~kpk~~~~~~~~~~~g~~~~~~~~i--GD~~ 127 (188)
T 2r8e_A 61 GIRCALTSD--IEVAIITGRKA-KLVEDRCATLGITH-LYQGQSNKLIAFSDLLEKLAIAPENVAYV--GDDL 127 (188)
T ss_dssp HHHHHHTTT--CEEEEECSSCC-HHHHHHHHHHTCCE-EECSCSCSHHHHHHHHHHHTCCGGGEEEE--ESSG
T ss_pred HHHHHHHCC--CeEEEEeCCCh-HHHHHHHHHcCCce-eecCCCCCHHHHHHHHHHcCCCHHHEEEE--CCCH
Confidence 577777654 36778887665 44566666666543 3333344445566665554311 233333 5655
No 90
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=20.93 E-value=99 Score=24.91 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeecc
Q 028081 91 RPLVLSKDVQKVLMDALRVGAAVLGVPAK 119 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~~~i~~~~~~ 119 (214)
||+++.+.++.+++..++.+-++++.-+.
T Consensus 1 Mp~~~~~~~~~ll~~A~~~~yAV~AfNv~ 29 (349)
T 3elf_A 1 MPIATPEVYAEMLGQAKQNSYAFPAINCT 29 (349)
T ss_dssp -CBCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceecHHHHHHHHHHHHHcCceEEEEeeC
Confidence 46666666666666555544455544443
No 91
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=20.07 E-value=70 Score=21.13 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=19.3
Q ss_pred eeCCeehHHHHHHHHhcCCCcCeEEE
Q 028081 11 PLLGQPIALYSFYTFSRMVEVKEIVV 36 (214)
Q Consensus 11 ~l~gkpli~~~i~~~~~~~~~~~iiV 36 (214)
..+|+||..+.++.+++.+ +.-..|
T Consensus 25 ~~~g~pL~~~Iv~~~~~~G-iaGaTV 49 (114)
T 1o51_A 25 KHSGKPLFEYLVKRAYELG-MKGVTV 49 (114)
T ss_dssp EETTEEHHHHHHHHHHHTT-CSCCEE
T ss_pred ccCCeEHHHHHHHHHHHCC-CCeEEE
Confidence 4589999999999999875 543333
Done!