BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028082
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ATM|A Chain A, Crystal Structure Of The Recombinant Allergen Ves V 2
Length = 331
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 133 GLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQT-SSKALALEWSRNSKINGDFKIQA 191
G+ FE+W + + +W K + D+ R + T + K + LE S+ + F ++
Sbjct: 104 GVIDFERWRPIFRQNWGNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEE 163
Query: 192 ALNLAEELR 200
L LA++ R
Sbjct: 164 TLKLAKKTR 172
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 74 FMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDS-ANKVSANH-VLGSGN-CKLKYTYV 130
F VA P + + H ++ VF A+ S NH ++ GN C ++
Sbjct: 216 FHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFS-- 273
Query: 131 HGGLTTFEQWYDLAKNSWDF--AVSRKVYGDDMFRASYQTSSKALALEWSRN 180
GG+T WY+L+ DF A S ++ L EW RN
Sbjct: 274 -GGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRN 324
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 46 LNGLALAVEKPGFFIVDYN-VPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTL 104
LNG A+ V IVD + V K++ + +N + A G+ L+G L
Sbjct: 229 LNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAAS---------EGE----LKGIL 275
Query: 105 VFDSANKVSA--NHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFA 151
+++ VS NH S T V G L WYD N W F+
Sbjct: 276 DYNTEPLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYD---NEWGFS 321
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 46 LNGLALAVEKPGFFIVDYN-VPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTL 104
L+G A+ V IVD + + K+D +N++ + + L+G L
Sbjct: 238 LDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNAIM-------------KEASEGALKGIL 284
Query: 105 VFDSANKVSA--NHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFA 151
++ A VS NH S T V G L WYD N W F+
Sbjct: 285 GYNEAPLVSIDFNHNPASSTFDATLTKVSGRLVKVSSWYD---NEWGFS 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,287,434
Number of Sequences: 62578
Number of extensions: 251519
Number of successful extensions: 517
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)