BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028082
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0Y1|OP24B_ARATH Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis
thaliana GN=OEP24B PE=1 SV=1
Length = 213
Score = 326 bits (835), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 150/214 (70%), Positives = 185/214 (86%), Gaps = 3/214 (1%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS+KG+Y+TDK G+ ++AFNAGD+KLRA++TDAT+V GP+L GLALAVEKPG FI
Sbjct: 3 MKASIKGKYDTDKTSGIG--SLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFI 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
V+YNVPKKD RFQFMN+VR+A+KPLNLTYIH R DNRTI++G+LV DSANK+SANH++G+
Sbjct: 61 VEYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGT 120
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
NCK+KYTY HGGL TFE YDLAKN+WDFAVSR+ Y D RA+YQTSSK L +EWSRN
Sbjct: 121 NNCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN 180
Query: 181 SKINGDFKIQAALNLAEELRVPKLTAESTWNFEM 214
+K +G FK+ A++NLA+EL+ PKLTAE+TWN EM
Sbjct: 181 NKASG-FKVCASVNLADELKTPKLTAETTWNLEM 213
>sp|O49929|OEP24_PEA Outer envelope pore protein 24, chloroplastic OS=Pisum sativum
GN=OEP24 PE=1 SV=1
Length = 213
Score = 321 bits (822), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 156/214 (72%), Positives = 179/214 (83%), Gaps = 1/214 (0%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA+LKG+Y+ D + AATVAFNAGDVKLRAS+TDAT N PSL GL LAVEKPG F
Sbjct: 1 MKAALKGKYDLDHNSS-GAATVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFS 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
VDYNVPKKDFRFQFMN+VRVA+KPLNL YIH +GDNRTIL+GTLV+D +NKVSAN+ + S
Sbjct: 60 VDYNVPKKDFRFQFMNTVRVAEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVES 119
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
GNCKLKY+Y H GLTT E YD+AKNSWDFAVS KVYGDD +ASYQTSSK L LEW+RN
Sbjct: 120 GNCKLKYSYNHKGLTTIEPTYDVAKNSWDFAVSGKVYGDDSLKASYQTSSKVLGLEWTRN 179
Query: 181 SKINGDFKIQAALNLAEELRVPKLTAESTWNFEM 214
SK G FK+ A++NLAEE ++PKL+ EST NFEM
Sbjct: 180 SKQTGCFKVVASVNLAEEKKIPKLSVESTLNFEM 213
>sp|Q1H5C9|OP24A_ARATH Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis
thaliana GN=OEP24A PE=1 SV=1
Length = 213
Score = 317 bits (812), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 145/214 (67%), Positives = 179/214 (83%), Gaps = 2/214 (0%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS KG+++ DK VA+ T FNAG+ KLRA++TDA+ V GPS NGL+LAVEKPGFFI
Sbjct: 2 MKASFKGKFDVDKSGSVASLT--FNAGNAKLRATMTDASFVAGPSFNGLSLAVEKPGFFI 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
+DYNVPKKD RFQFMN++R+A+KPLNLTYIH RGDNRTI++G+ V D ANK+SAN+++G+
Sbjct: 60 IDYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGT 119
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
NCKLKYTYVHGG+ TFE YD+AKN WDFA+S K+YG D +A+YQTSSK L LEWS N
Sbjct: 120 KNCKLKYTYVHGGIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEWSNN 179
Query: 181 SKINGDFKIQAALNLAEELRVPKLTAESTWNFEM 214
SK G FK+ A++NLAEEL+ PKLTAE+TWN E+
Sbjct: 180 SKSTGSFKVCASMNLAEELKPPKLTAETTWNLEL 213
>sp|B8ANR3|OEP24_ORYSI Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. indica GN=OEP24 PE=3 SV=1
Length = 224
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 148/224 (66%), Gaps = 10/224 (4%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLTLTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKPPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSS 170
S +H LGS C++KY+Y HG LTT E +D A N+WDFAV+RK G D +A+YQ S+
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 180
Query: 171 KALALEWSRNSKINGDFKIQAALNLAEELRVPKLTAESTWNFEM 214
K LAL+W+R+SKI FK+ A+ +L+++ + PKL AESTWN+E+
Sbjct: 181 KLLALDWTRDSKIGASFKVAASFDLSDQSKAPKLIAESTWNYEI 224
>sp|Q75IQ4|OEP24_ORYSJ Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. japonica GN=OEP24 PE=2 SV=1
Length = 224
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 148/224 (66%), Gaps = 10/224 (4%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLILTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKLPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSS 170
S +H LGS C++KY+Y HG LTT E +D A N+WDFAV+RK G D +A+YQ S+
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 180
Query: 171 KALALEWSRNSKINGDFKIQAALNLAEELRVPKLTAESTWNFEM 214
K LAL+W+R+SKI FK+ A+ +L+++ + PKL AESTWN+E+
Sbjct: 181 KLLALDWTRDSKIGASFKVAASFDLSDQSKAPKLIAESTWNYEI 224
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2
SV=1
Length = 1006
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 70 FRFQFMNSVRVADKPLNLTY---IHGRGDNRTILEGTLVFDSANKVSANHVLGSGNCKLK 126
+FQ RVA+KPL +TY I D+ I +FD KV + +++ + N LK
Sbjct: 744 IQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLV-TCNIMLK 802
Query: 127 YTYVHGGLTTFEQWYDL----------AKNSWDF 150
Y+ GGL FE+ +L KNS DF
Sbjct: 803 -AYLQGGL--FEEARELFQKMSEDGNHIKNSSDF 833
>sp|P22630|AMY1_AERHY Alpha-amylase OS=Aeromonas hydrophila PE=3 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 42/159 (26%)
Query: 26 AGDVKLRASLTDATVVNG-------PSLNGLALAVEKPGFFIVDYNVPKKD-FRFQFMNS 77
A D L ASL A G P G AL + F + +++P D FR+Q +N
Sbjct: 269 AYDFPLFASLRGALGYGGSMNQLADPGAYGQALPGNRAVTFAITHDIPTNDGFRYQILNQ 328
Query: 78 VRVADKPLNLTYIHGRGDN------------------------RTILEGTLVFDSANKVS 113
D+ L Y+ GR R+ L+G + F +A +
Sbjct: 329 T---DEKLAYAYLLGRDGGSPLVYSDHGETQDKDGLRWQDYYLRSDLKGMIRFHNAVQGQ 385
Query: 114 ANHVLGSGNCKLKYTYVHGGL-----TTFEQ--WYDLAK 145
++GSG+C + + GL +EQ W D AK
Sbjct: 386 PMQLIGSGDCFVLFKRGKQGLVGVNKCDYEQEYWLDTAK 424
>sp|Q8RKI5|TARF_BACPZ Putative CDP-glycerol:glycerophosphate glycerophosphotransferase
TarF OS=Bacillus subtilis subsp. spizizenii (strain ATCC
23059 / NRRL B-14472 / W23) GN=tarF PE=3 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 83 KPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGSGNCKLKYTYVHGGLTTFEQWYD 142
KP N TY+ GT + AN + H+ G+ + K ++
Sbjct: 115 KPRNTTYVQT-------WHGTPLKKLANDMDEVHMPGTTTEQYKRNFLKEA--------- 158
Query: 143 LAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNLAEELRVP 202
+ WD+ +S Y ++FR+++Q + + RN ++ + + L + E L +
Sbjct: 159 ---SKWDYLISPNAYSTEIFRSAFQFKKTFIESGYPRNDFLHKKNRNEEMLKIKERLGIN 215
Query: 203 K 203
K
Sbjct: 216 K 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,719,473
Number of Sequences: 539616
Number of extensions: 2984292
Number of successful extensions: 5559
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5543
Number of HSP's gapped (non-prelim): 9
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)