Query 028082
Match_columns 214
No_of_seqs 29 out of 31
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f95_A Beta-glucosidase; beta- 72.8 6.3 0.00022 32.9 5.7 60 60-124 49-114 (193)
2 4epa_A Pesticin receptor; TONB 63.7 75 0.0026 27.7 12.4 58 140-214 407-465 (655)
3 3emn_X Voltage-dependent anion 62.8 76 0.0026 27.5 18.2 58 145-204 228-287 (295)
4 4aui_A Porin (PORB); membrane 43.5 1.1E+02 0.0037 25.5 8.3 56 111-167 210-265 (327)
5 3efm_A FAUA, ferric alcaligin 41.2 24 0.00083 30.9 4.0 16 199-214 498-513 (707)
6 3prn_A Porin; integral membran 30.2 2.8E+02 0.0097 24.4 12.4 67 111-195 195-261 (289)
7 3szv_A Pyroglutatmate porin OP 24.9 1.1E+02 0.0036 27.6 5.5 28 142-170 254-281 (401)
8 2xwx_A GBPA, glcnac-binding pr 24.7 2.7E+02 0.0093 25.4 8.2 64 5-70 302-377 (391)
9 2fmd_A Lectin, agglutinin, BMA 21.4 1.5E+02 0.0053 24.6 5.5 39 159-199 166-204 (240)
10 2por_A Porin; HET: C8E; 1.80A 20.5 71 0.0024 26.9 3.3 57 112-170 186-256 (301)
11 1hql_A Lectin; xenograft antig 20.2 1.8E+02 0.006 24.7 5.7 39 159-199 170-208 (257)
No 1
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=72.81 E-value=6.3 Score=32.92 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=44.1
Q ss_pred EEEeeCCCCCeeEEEeeeeeecceeeeEEEeecCCCceeEEeeEEEEe------CCCceEEEEEecCCCee
Q 028082 60 IVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFD------SANKVSANHVLGSGNCK 124 (214)
Q Consensus 60 ~iDy~~~~~d~rFQFmnt~~V~~k~lnlTY~H~~~~nrT~ldgtl~~D------~aNK~s~~y~~~s~~c~ 124 (214)
-+|+++..-.-+|.|-.+... .+.+.+.-+ -| +.+++++|+|| |...|++...|+..+|.
T Consensus 49 ~vD~~~QEDAr~~~w~G~~~a---~~~~~~~~~-~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~C~ 114 (193)
T 3f95_A 49 SVNLSYQEDGRGFNWRAQAAL---SLSYLEPTP-LD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESNCL 114 (193)
T ss_dssp EECSSSTTCEEEEEESSSEEE---EEEEEEEEE-CC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSCEE
T ss_pred eechhhccceeEeEEcCCCce---EEEEecCCC-cC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCCcc
Confidence 489999999999999765331 233322223 34 77888889999 99999999999977683
No 2
>4epa_A Pesticin receptor; TONB dependent transporter, iron import, metal transport; HET: LDA; 3.20A {Yersinia pestis}
Probab=63.73 E-value=75 Score=27.70 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=38.8
Q ss_pred eccccccceeeEEEEeecCCCeEEEEEecCcceEEEEEeeCCCCCcceEEEEeeec-chhcCCCeeEEeeeccccC
Q 028082 140 WYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNL-AEELRVPKLTAESTWNFEM 214 (214)
Q Consensus 140 ~yd~~~nsWdfavs~k~~g~d~vratY~~~~k~lgleWsr~sk~~G~fKv~a~~~L-~d~~K~pkl~aEktWn~e~ 214 (214)
..+...-+|.+++++++.++..++++|-.+-+.-++ . .+ ....-.|.|-.|+.|++|+
T Consensus 407 ~~~~~~~~p~~~~~y~~~~~~~l~~s~~~~~~~p~~--------~---------~~~~~~~~n~~L~pe~~~~~e~ 465 (655)
T 4epa_A 407 KSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGY--------N---------IVPTAGLDAKPFVAEKSINYEL 465 (655)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEECCEECCBC--------C---------SSCCSSSCCCCBCCEEEEEEEE
T ss_pred cccccccceeEEEEEEeCCCeEEEEEEeeeEcCCcc--------C---------CCCcCccccCCcCceeeEEEEE
Confidence 344555678999999999999999999875442211 1 01 1123357788899988874
No 3
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=62.82 E-value=76 Score=27.50 Aligned_cols=58 Identities=21% Similarity=0.117 Sum_probs=32.6
Q ss_pred ccceeeEEEEeecCCCeEEEEEecCcceEEEEEee-CCCCCcceEEEEeeecch-hcCCCee
Q 028082 145 KNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSR-NSKINGDFKIQAALNLAE-ELRVPKL 204 (214)
Q Consensus 145 ~nsWdfavs~k~~g~d~vratY~~~~k~lgleWsr-~sk~~G~fKv~a~~~L~d-~~K~pkl 204 (214)
.++..++..|.++.+-.+||--+...++-.+=+.+ .++. .+-+++.||-.. +.+.+|+
T Consensus 228 ~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v--~ltls~~iD~~~l~~~~~K~ 287 (295)
T 3emn_X 228 NTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGI--KLTLSALLDGKNVNAGGHKL 287 (295)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTE--EEEEEEEEESSCTTTSCCEE
T ss_pred CcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCc--EEEEEEEECccccCCCCCcE
Confidence 45566777777777778888888777543332222 2222 245556565522 2256664
No 4
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=43.47 E-value=1.1e+02 Score=25.49 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=27.2
Q ss_pred ceEEEEEecCCCeeEEEEEEeCCeeeEEeeccccccceeeEEEEeecCCCeEEEEEe
Q 028082 111 KVSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQ 167 (214)
Q Consensus 111 K~s~~y~~~s~~c~lKY~YvH~g~tt~EP~yd~~~nsWdfavs~k~~g~d~vratY~ 167 (214)
.+.+.|.|+.-.-.+.|.|.+...+.-..........|...+.+++. .-++++.|.
T Consensus 210 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g-~~~~~~~~~ 265 (327)
T 4aui_A 210 RLVGGYDHDALYASVAVQQQDAKLTWRDDNSHNSQTEVATTVAYRFG-NVTPRVSYA 265 (327)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEECBT-TBCCEEEEE
T ss_pred eeeeeEEecceEEEEEEEEeeeeeeecccccccccceeeeeeeEEee-eeeEEEEEE
Confidence 46778888765566666665432211111111223345555555542 344555553
No 5
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein, membrane receptor, membrane transporter, membrane, TONB box; 2.33A {Bordetella pertussis}
Probab=41.24 E-value=24 Score=30.95 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=12.0
Q ss_pred cCCCeeEEeeeccccC
Q 028082 199 LRVPKLTAESTWNFEM 214 (214)
Q Consensus 199 ~K~pkl~aEktWn~e~ 214 (214)
.-.|.|-.|+.|++|+
T Consensus 498 ~~n~~L~pE~~~~~El 513 (707)
T 3efm_A 498 TSGGILPPIKSKSYEL 513 (707)
T ss_dssp SSSCBCCCEEEEEEEE
T ss_pred CCCCcCCCcccceEEE
Confidence 4457788888888874
No 6
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=30.20 E-value=2.8e+02 Score=24.37 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=40.3
Q ss_pred ceEEEEEecCCCeeEEEEEEeCCeeeEEeeccccccceeeEEEEeecCCCeEEEEEecCcceEEEEEeeCCCCCcceEEE
Q 028082 111 KVSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRNSKINGDFKIQ 190 (214)
Q Consensus 111 K~s~~y~~~s~~c~lKY~YvH~g~tt~EP~yd~~~nsWdfavs~k~~g~d~vratY~~~~k~lgleWsr~sk~~G~fKv~ 190 (214)
.|+++|.|+ +..+++=.|.-.+. +-..++|-+.+.++| +.-+|++.|. ++..+... -+|=|.
T Consensus 195 ~l~~~y~fG-~~~~v~~~Y~d~~d-------~~~~~~~gl~~~Y~v-~a~tv~a~y~--------D~~~~~~~-t~yGIg 256 (289)
T 3prn_A 195 FVGAAYKFN-DAGTVGLNWYDNGL-------STAGDQVTLYGNYAF-GATTVRAYVS--------DIDRAGAD-TAYGIG 256 (289)
T ss_dssp EEEEEECCS-SSEEEEEEEEECTT-------STTCSEEEEEEEEEE-TTEEEEEEEE--------EECSTTCC-CEEEEE
T ss_pred EEEEEEEcC-CCeEEEEEEEcccc-------ccCCceEEEEEEeEe-cCeEEEEEEe--------ccccCCCc-ceEEEE
Confidence 467778777 35555555644431 233567888888888 7777888877 33332222 346666
Q ss_pred Eeeec
Q 028082 191 AALNL 195 (214)
Q Consensus 191 a~~~L 195 (214)
+..+|
T Consensus 257 ~~YDL 261 (289)
T 3prn_A 257 ADYQF 261 (289)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 66666
No 7
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas aeruginosa} PDB: 2y0k_A*
Probab=24.91 E-value=1.1e+02 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.0
Q ss_pred cccccceeeEEEEeecCCCeEEEEEecCc
Q 028082 142 DLAKNSWDFAVSRKVYGDDMFRASYQTSS 170 (214)
Q Consensus 142 d~~~nsWdfavs~k~~g~d~vratY~~~~ 170 (214)
++.+++|.+.++.++ +.+++.+.||..+
T Consensus 254 ~iDn~~~s~~~~~~~-g~~t~~~~yq~~~ 281 (401)
T 3szv_A 254 ELDNRAFGALFSLRL-GAHAVAAGYQRIS 281 (401)
T ss_dssp CCEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred cCCHHHHhheeEEEE-ecEEEEEEEEEec
Confidence 667889999999987 7889999999754
No 8
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A {Vibrio cholerae}
Probab=24.67 E-value=2.7e+02 Score=25.42 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=39.6
Q ss_pred eceeeecCCCcceeEEEEEEe-cCceEEEeEeeeee---------eecCCcccceEEEee--cCceEEEEeeCCCCCe
Q 028082 5 LKGRYETDKDRGVAAATVAFN-AGDVKLRASLTDAT---------VVNGPSLNGLALAVE--KPGFFIVDYNVPKKDF 70 (214)
Q Consensus 5 ~kgrYd~~~~~~~a~atv~~~-aGD~klrAs~TDat---------f~~GpsL~GL~L~vE--KPGsF~iDy~~~~~d~ 70 (214)
|+.-|--+.+ .+.-.+++. .||+.+.|.+.|.. -++.-+...++|.++ |+|.+++.+..-.++-
T Consensus 302 l~~eY~i~~g--~~~l~f~~~~~~~~~v~~~v~d~~~~~~~~~~~~v~~~~~~~~tl~ls~~~aGhh~lvv~~~~~~G 377 (391)
T 2xwx_A 302 LAKEYEIGEQ--PIQLDLTLEAQGEMSAELTVYNHHQKPLASWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRDG 377 (391)
T ss_dssp CCSEEECCSS--CCEEEEEEEEESSEEEEEEEECTTSCEEEEEEEEECTTCEEEEEEECSCCCSEEEEEEEEEEETTC
T ss_pred CcceeEecCC--cEEEEEEEEecCceEEEEEEEcCCCCccceeeEEEcCCCcceEEEEccCCCCccEEEEEEEECCCC
Confidence 3444554433 344444444 79999999988742 223333356777777 8898888887754443
No 9
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii}
Probab=21.42 E-value=1.5e+02 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCeEEEEEecCcceEEEEEeeCCCCCcceEEEEeeecchhc
Q 028082 159 DDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNLAEEL 199 (214)
Q Consensus 159 ~d~vratY~~~~k~lgleWsr~sk~~G~fKv~a~~~L~d~~ 199 (214)
.-.++..|+..+|.|-+.+.-... ..+-+++.++|++..
T Consensus 166 ~~~v~I~Yd~~~~~L~V~l~~~~~--~~~~ls~~vdL~~~l 204 (240)
T 2fmd_A 166 TATAHISYNSASKRLSVVSSYPNS--SPVVVSFDVELNNVB 204 (240)
T ss_dssp EEEEEEEEETTTTEEEEEEECTTS--CCEEEEEECCGGGTS
T ss_pred EEEEEEEEeCCCCEEEEEEecCCC--CceEEEEEechHHhC
Confidence 346899999999999999976544 468899999996543
No 10
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=20.52 E-value=71 Score=26.86 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=34.2
Q ss_pred eEEEEEecCCCeeEEEEEEeCCeee--------EEee----ccccccceeeEE--EEeecCCCeEEEEEecCc
Q 028082 112 VSANHVLGSGNCKLKYTYVHGGLTT--------FEQW----YDLAKNSWDFAV--SRKVYGDDMFRASYQTSS 170 (214)
Q Consensus 112 ~s~~y~~~s~~c~lKY~YvH~g~tt--------~EP~----yd~~~nsWdfav--s~k~~g~d~vratY~~~~ 170 (214)
+.++|.|+. -+|.=.|.+..... +.|. -+...+.|.+++ ++++.+.-.|.+.|....
T Consensus 186 lgasY~~g~--~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~~~y~~~~~~~~~~~y~~~~ 256 (301)
T 2por_A 186 LAAIAKFGA--TNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDIDT 256 (301)
T ss_dssp EEEEEEETT--EEEEEEEEEEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred EEEEEEEcc--EEEEEEEEeccCccccccccccccccccccccccCceEEEEEEEeEEcCCcEEEEEEEEcCC
Confidence 678888874 55555554432100 0010 012347799999 999966555999998753
No 11
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A*
Probab=20.22 E-value=1.8e+02 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCeEEEEEecCcceEEEEEeeCCCCCcceEEEEeeecchhc
Q 028082 159 DDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNLAEEL 199 (214)
Q Consensus 159 ~d~vratY~~~~k~lgleWsr~sk~~G~fKv~a~~~L~d~~ 199 (214)
...++..|+..+|.|-+...-.+. ..+-+++.++|++..
T Consensus 170 ~~~v~I~Yd~~~~~L~V~l~~~~~--~~~~ls~~vdL~~~l 208 (257)
T 1hql_A 170 IATARISYDGSAEILTVVLSYPDG--SDYILSHSVDMRQNL 208 (257)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTT--EEEEEEEECCGGGTS
T ss_pred eEEEEEEEeCCCCEEEEEEecCCC--CceeeEEeechHHhc
Confidence 446999999999999999976544 467899999996543
Done!