Query 028082
Match_columns 214
No_of_seqs 29 out of 31
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 09:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028082.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028082hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fgqx1 f.4.3.1 (X:3-332) Pori 70.7 20 0.0015 27.7 10.3 84 111-207 205-289 (330)
2 d2o14a1 b.18.1.32 (A:14-159) H 37.8 41 0.003 24.6 6.4 71 19-102 66-136 (146)
3 d2gc9a1 b.60.1.6 (A:1-178) P-c 32.4 28 0.0021 27.4 4.9 53 60-117 35-92 (178)
4 d1ukga_ b.29.1.1 (A:) Legume l 25.7 67 0.0049 24.0 6.0 41 158-200 168-208 (241)
5 d1qjpa_ f.4.1.1 (A:) Outer mem 24.1 59 0.0043 22.0 4.9 22 148-169 123-144 (171)
6 d1kmoa_ f.4.3.3 (A:) Outer mem 23.1 21 0.0015 27.1 2.4 24 145-168 410-433 (661)
7 d1fjca_ d.58.7.1 (A:) Nucleoli 22.0 24 0.0017 23.0 2.3 38 60-97 57-95 (96)
8 d1kzla2 b.43.4.3 (A:93-202) Ri 21.4 77 0.0056 22.1 5.1 45 19-63 17-69 (110)
9 d1dhkb_ b.29.1.1 (B:) Phytohem 21.1 88 0.0064 22.8 5.7 42 159-201 132-173 (204)
10 d1rk8a_ d.58.7.1 (A:) RNA-bind 20.5 18 0.0013 23.3 1.3 35 60-94 53-88 (88)
11 d1cb8a2 b.24.1.1 (A:600-700) C 20.2 23 0.0017 24.5 2.0 19 46-64 33-51 (101)
No 1
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=70.66 E-value=20 Score=27.70 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred ceEEEEEecCCCeeEEEEEEeCCeeeEEeeccccccceeeEEEEeecCCCeEEEEEecCcceEEEEEeeCCCC-CcceEE
Q 028082 111 KVSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRNSKI-NGDFKI 189 (214)
Q Consensus 111 K~s~~y~~~s~~c~lKY~YvH~g~tt~EP~yd~~~nsWdfavs~k~~g~d~vratY~~~~k~lgleWsr~sk~-~G~fKv 189 (214)
.+.+.|.|+. -+|.-.|.|... .-...=+...+.|.+++.+.+.+...+++.|..... +.+.. .-.+-|
T Consensus 205 ~~ga~Y~~g~--~~l~~~y~~~~~-~~~~~~~~~~~~~~~~a~y~~~~~~~~~~~y~~~~~-------~~~~~~~~~~~l 274 (330)
T d2fgqx1 205 TLGASYNFGV--AKLSGLLQQTKF-KRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQ-------KAIDSKAHQITL 274 (330)
T ss_dssp EEEEEEECSS--CEEEEEEEEEEE-EETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEE-------GGGTEEEEEEEE
T ss_pred EEEEEEEeee--EEEEEEEEEeee-ccccCceEEEeEEEEEEEEEecccEEEEEEEEEEec-------ccCCCCceEEEE
Confidence 5889999874 466655554321 111122345578999999999988899999975321 11111 123556
Q ss_pred EEeeecchhcCCCeeEEe
Q 028082 190 QAALNLAEELRVPKLTAE 207 (214)
Q Consensus 190 ~a~~~L~d~~K~pkl~aE 207 (214)
.+.-+| +|...|-+|
T Consensus 275 g~~Y~l---SKrT~lYa~ 289 (330)
T d2fgqx1 275 GYVHNL---SKRTALYGN 289 (330)
T ss_dssp EEEEES---SSSEEEEEE
T ss_pred EEEEEc---cCchHHhhh
Confidence 666555 455555554
No 2
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=37.83 E-value=41 Score=24.59 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=45.0
Q ss_pred EEEEEEecCceEEEeEeeeeeeecCCcccceEEEeecCceEEEEeeCCCCCeeEEEeeeeeecceeeeEEEeecCCCcee
Q 028082 19 AATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRT 98 (214)
Q Consensus 19 ~atv~~~aGD~klrAs~TDatf~~GpsL~GL~L~vEKPGsF~iDy~~~~~d~rFQFmnt~~V~~k~lnlTY~H~~~~nrT 98 (214)
+=.+.++=|+-++++.+-|+... .--.+|+.-.-.++|.|. +-.| .|.|-+-+|+|.++|+++...+
T Consensus 66 ~f~v~vPnG~Y~Vtv~~Gd~~~~-~~~~eg~~~~~~~~g~~~----------~~~~--~V~VtDG~L~l~ft~~~~G~~~ 132 (146)
T d2o14a1 66 TFNVDLPNGLYEVKVTLGNTARA-SVAAEGVFQVINMTGDGA----------EDTF--QIPVTDGQLNLLVTEGKAGTAF 132 (146)
T ss_dssp CEEEECCSEEEEEEEEESSCSEE-EEEETTEEEEEEEESTTC----------EEEE--EEEECSSEEEEEEEESSTTSCC
T ss_pred eEEEECCCCeEEEEEEEecCCCc-cEEEeeEEeccccCCccE----------EEEE--EEEEECCeEEEEEecCCCCCcc
Confidence 45677777777777777774332 233445443333555443 2234 4788899999999998877677
Q ss_pred EEee
Q 028082 99 ILEG 102 (214)
Q Consensus 99 ~ldg 102 (214)
.|+.
T Consensus 133 ~in~ 136 (146)
T d2o14a1 133 TLSA 136 (146)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 3
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc {Lactobacillus plantarum [TaxId: 1590]}
Probab=32.41 E-value=28 Score=27.39 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=42.4
Q ss_pred EEEeeCCCCC-----eeEEEeeeeeecceeeeEEEeecCCCceeEEeeEEEEeCCCceEEEEE
Q 028082 60 IVDYNVPKKD-----FRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHV 117 (214)
Q Consensus 60 ~iDy~~~~~d-----~rFQFmnt~~V~~k~lnlTY~H~~~~nrT~ldgtl~~D~aNK~s~~y~ 117 (214)
.|||-.|.+- ++.|=-+-+++.+.-.+++.+-.+| -+++|++|+.||.=-...
T Consensus 35 tIdYrIHgG~vaGRwv~dq~~~~~~~~~~l~kisW~EpTG-----T~VSl~~~i~~k~~hg~I 92 (178)
T d2gc9a1 35 TVDYRIHGGMVAGRWVTDQKADIVMLTEGIYKISWTEPTG-----TDVALDFMPNEKKLHGTI 92 (178)
T ss_dssp EEEEEECSSTTTTCEEEEEECEEEEEETTEEEEEEECTTS-----CEEEEEEEGGGTEEEEEE
T ss_pred EEEEEEecCcccCceecceEEEEEEEcCCeEEEEeecCCC-----CEEEEEEeccccEEEEEE
Confidence 5899999887 8999999999988878888777654 367999999998644333
No 4
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]}
Probab=25.74 E-value=67 Score=23.99 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=32.4
Q ss_pred CCCeEEEEEecCcceEEEEEeeCCCCCcceEEEEeeecchhcC
Q 028082 158 GDDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNLAEELR 200 (214)
Q Consensus 158 g~d~vratY~~~~k~lgleWsr~sk~~G~fKv~a~~~L~d~~K 200 (214)
....++..|+..+|.|.+.+.-+ ....+++++.++|++..+
T Consensus 168 ~~~~v~I~Yd~~~~~L~v~~~~~--~~~~~~l~~~vdL~~~l~ 208 (241)
T d1ukga_ 168 QSLNVLVTFNPSTRNLDVVATYS--DGTRYEVSYEVDVRSVLP 208 (241)
T ss_dssp CCEEEEEEEETTTTEEEEEEEET--TCCEEEEEEECCGGGTSC
T ss_pred cEEEEEEEEeCCCcEEEEEEccC--CCCceEEEEEEehHHhCC
Confidence 34468999999999999999764 345689999999966553
No 5
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=24.07 E-value=59 Score=21.99 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=12.1
Q ss_pred eeeEEEEeecCCCeEEEEEecC
Q 028082 148 WDFAVSRKVYGDDMFRASYQTS 169 (214)
Q Consensus 148 Wdfavs~k~~g~d~vratY~~~ 169 (214)
+-+++.+++.++=.|++-|+..
T Consensus 123 ~G~G~~y~i~~~~~l~~ey~~~ 144 (171)
T d1qjpa_ 123 FAGGVEYAITPEIATRLEYQWT 144 (171)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeEEEEEeCCCEEEEEEEEEE
Confidence 4455555555555555555543
No 6
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia coli [TaxId: 562]}
Probab=23.12 E-value=21 Score=27.15 Aligned_cols=24 Identities=8% Similarity=-0.158 Sum_probs=14.3
Q ss_pred ccceeeEEEEeecCCCeEEEEEec
Q 028082 145 KNSWDFAVSRKVYGDDMFRASYQT 168 (214)
Q Consensus 145 ~nsWdfavs~k~~g~d~vratY~~ 168 (214)
.-++.+++++++..+..+++.|..
T Consensus 410 ~~~p~~~~~y~~~~~~~~~~~~~~ 433 (661)
T d1kmoa_ 410 APLPALNVLYHLTDSWNLYANTEG 433 (661)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cccccceecccccccccccccccc
Confidence 344556666666666666666543
No 7
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=22.02 E-value=24 Score=22.98 Aligned_cols=38 Identities=11% Similarity=0.339 Sum_probs=24.8
Q ss_pred EEEeeCCCCCee-EEEeeeeeecceeeeEEEeecCCCce
Q 028082 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNR 97 (214)
Q Consensus 60 ~iDy~~~~~d~r-FQFmnt~~V~~k~lnlTY~H~~~~nr 97 (214)
.|+|.=+...-+ .+=||...+.+++|++.|..+++.+|
T Consensus 57 fV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~~~r 95 (96)
T d1fjca_ 57 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95 (96)
T ss_dssp EEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCCC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCC
Confidence 366654432211 22357889999999999998876554
No 8
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=21.37 E-value=77 Score=22.08 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=29.3
Q ss_pred EEEEEEecCceEEEeEeeeeeee----c--CCcccceEEEee--cCceEEEEe
Q 028082 19 AATVAFNAGDVKLRASLTDATVV----N--GPSLNGLALAVE--KPGFFIVDY 63 (214)
Q Consensus 19 ~atv~~~aGD~klrAs~TDatf~----~--GpsL~GL~L~vE--KPGsF~iDy 63 (214)
+-.+.-....++++.++.+.-+. . .-++||++|+|. ++.+|.+|.
T Consensus 17 I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~l 69 (110)
T d1kzla2 17 IVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMM 69 (110)
T ss_dssp EEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEE
T ss_pred EEEEEECCCcceeeeecchhhhhhhhhhhheEEcCCcEEEEEeecCCEEEEEE
Confidence 44455556677788777664333 2 345999999998 555666654
No 9
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=21.13 E-value=88 Score=22.78 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCeEEEEEecCcceEEEEEeeCCCCCcceEEEEeeecchhcCC
Q 028082 159 DDMFRASYQTSSKALALEWSRNSKINGDFKIQAALNLAEELRV 201 (214)
Q Consensus 159 ~d~vratY~~~~k~lgleWsr~sk~~G~fKv~a~~~L~d~~K~ 201 (214)
...++..|+..+++|.+.+.-... .....++..++|++..+.
T Consensus 132 ~~~v~I~Yd~~~~~L~V~l~~~~~-~~~~~l~~~vdL~~~l~~ 173 (204)
T d1dhkb_ 132 NAEVRITYNSSTKVFSVSLSNPST-GKSNNVSTTVELEKEVYD 173 (204)
T ss_dssp CEEEEEEEETTTTEEEEEEECTTT-CCEEEEEEECCCCSGGGS
T ss_pred EEEEEEEEcCCCEEEEEEEecCCC-CCceeEEEEecchhccCC
Confidence 456889999999999999986654 345678888999765543
No 10
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.45 E-value=18 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=25.0
Q ss_pred EEEeeCCCCCee-EEEeeeeeecceeeeEEEeecCC
Q 028082 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRG 94 (214)
Q Consensus 60 ~iDy~~~~~d~r-FQFmnt~~V~~k~lnlTY~H~~~ 94 (214)
-|+|.=+...-+ .+-||...+.+++|.+.|.+++|
T Consensus 53 fV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~kG 88 (88)
T d1rk8a_ 53 LVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 88 (88)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred eEEECCHHHHHHHHHHcCCCEECCEEEEEEEecCCC
Confidence 366664443333 35578889999999999999875
No 11
>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=20.18 E-value=23 Score=24.50 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=16.9
Q ss_pred ccceEEEeecCceEEEEee
Q 028082 46 LNGLALAVEKPGFFIVDYN 64 (214)
Q Consensus 46 L~GL~L~vEKPGsF~iDy~ 64 (214)
+.||.+.+.+|+++|+..+
T Consensus 33 ~~gl~v~~d~p~~vmi~~~ 51 (101)
T d1cb8a2 33 VAGIEIETDKPCAVLIKHI 51 (101)
T ss_dssp ETTEEEEESSCEEEEEECT
T ss_pred cCCeEEEcCCceEEEEEEC
Confidence 6789999999999999765
Done!