Query 028083
Match_columns 214
No_of_seqs 197 out of 1697
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 2.8E-20 6.1E-25 141.8 15.9 121 91-212 1-141 (142)
2 PRK11478 putative lyase; Provi 99.8 8.6E-20 1.9E-24 136.6 16.2 121 90-211 3-128 (129)
3 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 3E-19 6.6E-24 131.8 15.4 119 92-211 2-125 (125)
4 PLN03042 Lactoylglutathione ly 99.8 4.2E-19 9.2E-24 142.2 16.9 122 92-213 26-175 (185)
5 TIGR03645 glyox_marine lactoyl 99.8 3.3E-19 7.1E-24 139.9 15.7 122 92-213 3-152 (162)
6 PLN02367 lactoylglutathione ly 99.8 4.8E-19 1E-23 145.4 16.8 122 92-213 74-223 (233)
7 cd08342 HPPD_N_like N-terminal 99.8 3.6E-19 7.8E-24 135.4 14.6 118 94-213 1-124 (136)
8 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.1E-18 2.4E-23 129.1 14.5 117 93-210 1-125 (125)
9 cd08364 FosX FosX, a fosfomyci 99.8 1.2E-18 2.6E-23 131.8 14.7 115 90-212 1-122 (131)
10 cd07243 2_3_CTD_C C-terminal d 99.8 1.6E-18 3.4E-23 133.4 15.1 113 90-211 3-124 (143)
11 TIGR03081 metmalonyl_epim meth 99.8 5.2E-19 1.1E-23 131.7 11.9 119 93-211 1-128 (128)
12 PRK04101 fosfomycin resistance 99.8 1.8E-18 3.9E-23 132.0 15.0 113 90-212 1-119 (139)
13 cd07233 Glyoxalase_I Glyoxalas 99.8 2.5E-18 5.4E-23 126.8 15.0 114 94-210 1-121 (121)
14 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 3.3E-18 7.3E-23 126.2 15.2 117 91-212 1-125 (125)
15 TIGR00068 glyox_I lactoylgluta 99.8 3.6E-18 7.9E-23 132.0 14.7 121 89-213 13-142 (150)
16 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 2.3E-18 5E-23 124.4 12.8 110 94-209 1-114 (114)
17 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 1.1E-17 2.3E-22 124.9 15.2 114 93-212 1-128 (128)
18 cd08347 PcpA_C_like C-terminal 99.8 1.2E-17 2.6E-22 130.6 14.7 113 93-213 1-121 (157)
19 cd08361 PpCmtC_N N-terminal do 99.8 1.8E-17 3.9E-22 124.1 15.1 108 90-213 3-120 (124)
20 cd07257 THT_oxygenase_C The C- 99.8 5.3E-18 1.1E-22 131.8 12.4 111 93-211 1-124 (153)
21 PRK10291 glyoxalase I; Provisi 99.8 9E-18 2E-22 126.2 13.1 111 98-212 1-120 (129)
22 cd08363 FosB FosB, a fosfomyci 99.8 9.3E-18 2E-22 127.0 13.1 110 94-213 1-116 (131)
23 cd07249 MMCE Methylmalonyl-CoA 99.8 9.6E-18 2.1E-22 124.6 12.7 118 94-211 1-128 (128)
24 PLN02300 lactoylglutathione ly 99.8 1.5E-17 3.3E-22 141.7 15.4 122 88-213 19-149 (286)
25 cd09014 BphC-JF8_C_like C-term 99.8 2.3E-17 5.1E-22 129.9 15.2 118 89-212 2-127 (166)
26 PF00903 Glyoxalase: Glyoxalas 99.8 2E-18 4.2E-23 127.6 8.4 117 93-209 1-128 (128)
27 cd07255 Glo_EDI_BRP_like_12 Th 99.8 4.8E-17 1.1E-21 120.8 16.0 112 92-212 1-119 (125)
28 cd07265 2_3_CTD_N N-terminal d 99.8 3E-17 6.5E-22 121.9 14.6 109 91-213 2-120 (122)
29 cd07263 Glo_EDI_BRP_like_16 Th 99.8 4.1E-17 8.9E-22 119.2 14.8 113 96-211 1-119 (119)
30 cd07267 THT_Oxygenase_N N-term 99.8 4.6E-17 1E-21 119.7 14.7 106 91-211 1-109 (113)
31 cd07247 SgaA_N_like N-terminal 99.8 5.8E-17 1.3E-21 118.6 15.1 109 94-211 1-114 (114)
32 cd09013 BphC-JF8_N_like N-term 99.8 4.3E-17 9.2E-22 121.0 14.4 110 89-212 2-118 (121)
33 cd08355 Glo_EDI_BRP_like_14 Th 99.8 1.1E-16 2.5E-21 118.6 16.5 116 97-212 3-122 (122)
34 cd08346 PcpA_N_like N-terminal 99.8 2.9E-17 6.4E-22 121.4 13.3 116 93-210 1-126 (126)
35 cd07252 BphC1-RGP6_N_like N-te 99.7 5.4E-17 1.2E-21 120.6 14.5 108 92-213 1-118 (120)
36 cd07256 HPCD_C_class_II C-term 99.7 8E-17 1.7E-21 126.2 15.0 112 92-212 2-123 (161)
37 cd07244 FosA FosA, a Fosfomyci 99.7 5.1E-17 1.1E-21 120.8 13.1 106 93-211 1-109 (121)
38 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.8E-16 3.8E-21 119.5 15.9 113 93-213 1-121 (134)
39 cd08360 MhqB_like_C C-terminal 99.7 9.5E-17 2.1E-21 121.7 14.4 106 92-211 2-119 (134)
40 cd07237 BphC1-RGP6_C_like C-te 99.7 7.2E-17 1.6E-21 125.5 14.1 111 92-212 8-131 (154)
41 cd08362 BphC5-RrK37_N_like N-t 99.7 8.4E-17 1.8E-21 118.7 13.8 109 91-213 1-118 (120)
42 cd08351 ChaP_like ChaP, an enz 99.7 1.4E-16 2.9E-21 118.8 14.6 107 91-213 2-122 (123)
43 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 4.2E-16 9.1E-21 114.8 16.4 113 97-211 5-121 (122)
44 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.8E-16 3.9E-21 117.5 14.0 113 93-212 2-119 (120)
45 cd07240 ED_TypeI_classII_N N-t 99.7 2E-16 4.3E-21 115.9 14.1 107 92-213 1-115 (117)
46 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.7E-16 5.8E-21 116.6 14.8 115 94-212 1-125 (125)
47 cd08345 Fosfomycin_RP Fosfomyc 99.7 1.4E-16 3E-21 116.3 12.4 104 96-211 1-110 (113)
48 TIGR03211 catechol_2_3 catecho 99.7 5.7E-16 1.2E-20 132.6 16.9 116 88-211 140-264 (303)
49 cd08359 Glo_EDI_BRP_like_22 Th 99.7 5.9E-16 1.3E-20 114.1 14.7 109 96-211 4-119 (119)
50 cd08343 ED_TypeI_classII_C C-t 99.7 6.1E-16 1.3E-20 116.6 14.9 108 95-213 1-118 (131)
51 cd07239 BphC5-RK37_C_like C-te 99.7 5.5E-16 1.2E-20 119.3 14.6 106 92-213 3-118 (144)
52 PRK06724 hypothetical protein; 99.7 4.2E-16 9E-21 117.8 13.4 108 90-213 4-124 (128)
53 cd08354 Glo_EDI_BRP_like_13 Th 99.7 8.4E-16 1.8E-20 113.4 14.1 114 94-212 1-122 (122)
54 cd08349 BLMA_like Bleomycin bi 99.7 1.1E-15 2.3E-20 111.0 14.4 105 98-211 3-112 (112)
55 cd07266 HPCD_N_class_II N-term 99.7 6.3E-16 1.4E-20 114.4 13.3 108 90-212 1-118 (121)
56 cd08358 Glo_EDI_BRP_like_21 Th 99.7 2.1E-15 4.5E-20 113.8 15.2 110 93-211 2-126 (127)
57 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.3E-15 2.8E-20 129.7 15.9 115 89-212 132-256 (294)
58 cd08357 Glo_EDI_BRP_like_18 Th 99.7 1.1E-15 2.3E-20 113.3 13.4 111 96-212 2-125 (125)
59 cd06587 Glo_EDI_BRP_like This 99.7 1.1E-15 2.4E-20 109.0 13.1 108 96-209 1-112 (112)
60 cd07258 PpCmtC_C C-terminal do 99.7 1E-15 2.2E-20 117.6 13.4 105 95-212 1-114 (141)
61 cd07235 MRD Mitomycin C resist 99.7 1.2E-15 2.7E-20 113.0 13.3 113 94-211 1-122 (122)
62 cd07254 Glo_EDI_BRP_like_20 Th 99.7 3.3E-15 7.2E-20 110.4 15.0 107 95-213 3-118 (120)
63 cd08350 BLMT_like BLMT, a bleo 99.7 2E-15 4.3E-20 111.9 13.6 104 96-212 5-119 (120)
64 TIGR03213 23dbph12diox 2,3-dih 99.7 4.8E-15 1E-19 126.1 17.3 113 91-211 140-262 (286)
65 cd09012 Glo_EDI_BRP_like_24 Th 99.7 2.3E-15 5E-20 112.1 13.0 113 94-211 1-123 (124)
66 PF12681 Glyoxalase_2: Glyoxal 99.7 5.6E-15 1.2E-19 106.8 13.9 100 99-210 1-108 (108)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.6 4.3E-15 9.3E-20 110.2 13.2 108 94-211 1-123 (123)
68 cd08356 Glo_EDI_BRP_like_17 Th 99.6 3.3E-15 7.1E-20 110.1 12.5 100 97-211 5-113 (113)
69 cd07261 Glo_EDI_BRP_like_11 Th 99.6 7.3E-15 1.6E-19 107.5 13.8 106 97-211 2-114 (114)
70 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 9.5E-15 2E-19 106.7 14.2 101 97-212 4-111 (112)
71 cd08344 MhqB_like_N N-terminal 99.6 1.2E-14 2.6E-19 106.5 13.6 100 93-211 2-108 (112)
72 PF13669 Glyoxalase_4: Glyoxal 99.6 2.9E-15 6.4E-20 109.7 9.4 93 95-189 1-95 (109)
73 TIGR03213 23dbph12diox 2,3-dih 99.6 1.8E-14 3.8E-19 122.6 13.9 107 91-211 1-117 (286)
74 TIGR02295 HpaD 3,4-dihydroxyph 99.6 3.1E-14 6.7E-19 121.3 14.8 108 90-212 1-115 (294)
75 cd07251 Glo_EDI_BRP_like_10 Th 99.6 3.4E-14 7.4E-19 104.4 13.0 110 97-211 2-120 (121)
76 TIGR03211 catechol_2_3 catecho 99.6 2.9E-14 6.3E-19 122.1 14.5 108 91-213 2-119 (303)
77 KOG2944 Glyoxalase [Carbohydra 99.6 5E-14 1.1E-18 107.5 12.0 121 91-212 40-168 (170)
78 PLN02300 lactoylglutathione ly 99.5 1.3E-13 2.7E-18 117.6 14.3 119 91-213 152-279 (286)
79 cd07250 HPPD_C_like C-terminal 99.5 4.3E-13 9.3E-18 108.1 9.8 99 92-190 2-111 (191)
80 COG2514 Predicted ring-cleavag 99.4 8.2E-12 1.8E-16 103.4 13.0 111 92-211 9-125 (265)
81 PLN02875 4-hydroxyphenylpyruva 99.3 8.7E-12 1.9E-16 110.2 11.4 140 47-189 134-293 (398)
82 TIGR01263 4HPPD 4-hydroxypheny 99.3 1.7E-11 3.8E-16 107.5 9.4 104 87-190 152-266 (353)
83 TIGR01263 4HPPD 4-hydroxypheny 99.3 1.3E-10 2.9E-15 101.9 14.4 97 92-189 1-99 (353)
84 COG3607 Predicted lactoylgluta 99.2 8.5E-11 1.8E-15 86.6 10.3 119 92-214 2-129 (133)
85 COG3324 Predicted enzyme relat 99.2 4.9E-10 1.1E-14 84.0 13.2 113 92-213 8-126 (127)
86 cd06588 PhnB_like Escherichia 99.2 1.1E-09 2.3E-14 82.4 14.6 107 98-210 4-128 (128)
87 COG0346 GloA Lactoylglutathion 99.2 7.2E-11 1.6E-15 86.3 7.2 120 92-211 1-138 (138)
88 COG3565 Predicted dioxygenase 99.1 2.5E-09 5.4E-14 77.8 11.3 112 93-212 4-129 (138)
89 KOG0638 4-hydroxyphenylpyruvat 99.0 6.1E-10 1.3E-14 93.9 7.5 103 88-190 12-119 (381)
90 COG2764 PhnB Uncharacterized p 99.0 2.4E-08 5.1E-13 76.0 14.8 111 99-213 6-132 (136)
91 PLN02875 4-hydroxyphenylpyruva 98.9 1.5E-08 3.2E-13 89.9 13.1 96 94-189 1-119 (398)
92 PF14696 Glyoxalase_5: Hydroxy 98.9 1.1E-08 2.5E-13 78.0 7.9 118 87-211 3-125 (139)
93 COG3185 4-hydroxyphenylpyruvat 98.8 3.3E-09 7.1E-14 90.9 3.4 103 88-190 162-273 (363)
94 KOG2943 Predicted glyoxalase [ 98.8 3.4E-08 7.4E-13 80.6 8.7 115 92-212 16-143 (299)
95 PF13468 Glyoxalase_3: Glyoxal 98.8 2.5E-08 5.3E-13 79.0 7.2 93 94-186 1-101 (175)
96 PRK01037 trmD tRNA (guanine-N( 98.7 9.4E-08 2E-12 82.6 10.0 105 92-212 246-354 (357)
97 COG2514 Predicted ring-cleavag 98.6 4.3E-07 9.4E-12 75.6 9.9 97 92-210 167-264 (265)
98 KOG2943 Predicted glyoxalase [ 98.4 1.2E-06 2.7E-11 71.6 8.3 109 93-211 149-269 (299)
99 PRK10148 hypothetical protein; 98.2 0.00019 4.2E-09 55.4 15.5 108 98-212 6-141 (147)
100 PF14506 CppA_N: CppA N-termin 98.2 9E-05 2E-09 54.6 12.7 110 95-213 2-115 (125)
101 COG3185 4-hydroxyphenylpyruvat 98.1 3E-05 6.4E-10 66.9 10.5 109 88-204 17-142 (363)
102 COG2185 Sbm Methylmalonyl-CoA 98.0 9.4E-07 2E-11 67.4 -0.4 83 9-116 56-138 (143)
103 KOG0638 4-hydroxyphenylpyruvat 97.7 2E-05 4.3E-10 67.1 2.9 103 87-189 172-289 (381)
104 PF06983 3-dmu-9_3-mt: 3-demet 97.1 0.031 6.8E-07 41.3 13.2 97 101-210 10-116 (116)
105 PF15067 FAM124: FAM124 family 96.2 0.055 1.2E-06 44.6 9.5 106 93-209 128-235 (236)
106 TIGR01501 MthylAspMutase methy 96.0 0.0015 3.2E-08 49.7 -0.5 86 10-116 46-133 (134)
107 PF13669 Glyoxalase_4: Glyoxal 95.8 0.047 1E-06 39.3 6.9 50 164-213 1-56 (109)
108 TIGR00640 acid_CoA_mut_C methy 95.5 0.0024 5.2E-08 48.4 -1.0 82 9-115 46-127 (132)
109 PF14507 CppA_C: CppA C-termin 94.3 0.13 2.9E-06 37.0 5.4 91 93-207 5-98 (101)
110 cd02072 Glm_B12_BD B12 binding 94.3 0.0097 2.1E-07 44.9 -0.5 35 10-46 44-78 (128)
111 cd08353 Glo_EDI_BRP_like_7 Thi 92.9 0.42 9.2E-06 35.5 6.5 54 92-146 86-140 (142)
112 cd08352 Glo_EDI_BRP_like_1 Thi 92.4 1 2.2E-05 32.0 7.8 50 162-211 3-57 (125)
113 cd08347 PcpA_C_like C-terminal 92.2 0.77 1.7E-05 35.4 7.2 51 162-212 1-53 (157)
114 KOG2944 Glyoxalase [Carbohydra 92.2 0.55 1.2E-05 36.6 6.1 43 92-136 114-156 (170)
115 PLN02367 lactoylglutathione ly 91.4 1.2 2.5E-05 37.1 7.7 56 92-149 168-224 (233)
116 cd07242 Glo_EDI_BRP_like_6 Thi 91.3 1.1 2.3E-05 32.5 6.8 50 162-212 1-54 (128)
117 TIGR03645 glyox_marine lactoyl 90.9 1.4 3E-05 34.1 7.5 53 161-213 3-78 (162)
118 cd08346 PcpA_N_like N-terminal 90.9 1.4 3E-05 31.4 7.1 51 162-212 1-60 (126)
119 PRK02261 methylaspartate mutas 90.5 0.13 2.9E-06 39.1 1.3 36 10-47 48-83 (137)
120 cd07249 MMCE Methylmalonyl-CoA 90.4 1.5 3.2E-05 31.4 6.9 30 92-122 71-100 (128)
121 PF13670 PepSY_2: Peptidase pr 90.1 1.2 2.7E-05 30.5 5.9 40 172-211 30-72 (83)
122 PRK11478 putative lyase; Provi 89.0 2.8 6.1E-05 30.2 7.5 54 92-146 74-128 (129)
123 PRK10291 glyoxalase I; Provisi 88.5 3.3 7E-05 30.2 7.6 57 92-149 64-122 (129)
124 cd08348 BphC2-C3-RGP6_C_like T 88.4 3.3 7.2E-05 30.2 7.6 51 162-212 1-54 (134)
125 cd07245 Glo_EDI_BRP_like_9 Thi 88.2 1.8 3.9E-05 29.8 5.8 50 163-212 1-52 (114)
126 cd06587 Glo_EDI_BRP_like This 87.6 2.7 5.9E-05 28.5 6.3 48 165-213 1-51 (112)
127 cd07241 Glo_EDI_BRP_like_3 Thi 87.4 3.9 8.4E-05 29.0 7.3 50 163-212 2-56 (125)
128 cd07255 Glo_EDI_BRP_like_12 Th 87.3 3.5 7.7E-05 29.4 7.0 49 162-212 2-52 (125)
129 cd08342 HPPD_N_like N-terminal 87.1 4.8 0.0001 29.8 7.8 58 92-150 68-126 (136)
130 PLN03042 Lactoylglutathione ly 86.9 3.9 8.5E-05 32.7 7.6 56 92-149 120-176 (185)
131 cd07235 MRD Mitomycin C resist 86.4 2.7 5.8E-05 30.1 5.9 47 163-209 1-47 (122)
132 COG3865 Uncharacterized protei 85.9 14 0.0003 28.4 12.4 105 93-210 5-122 (151)
133 cd07233 Glyoxalase_I Glyoxalas 85.5 4.6 0.0001 28.5 6.8 49 163-211 1-57 (121)
134 cd07263 Glo_EDI_BRP_like_16 Th 85.1 4.5 9.7E-05 28.2 6.5 47 165-211 1-53 (119)
135 cd07252 BphC1-RGP6_N_like N-te 84.2 5.8 0.00013 28.5 6.8 48 162-210 2-51 (120)
136 TIGR03081 metmalonyl_epim meth 83.8 4.5 9.8E-05 28.9 6.2 30 92-122 71-100 (128)
137 PF06185 YecM: YecM protein; 83.5 14 0.00031 29.5 9.1 77 92-171 33-114 (185)
138 PF00903 Glyoxalase: Glyoxalas 82.2 7.9 0.00017 27.2 6.9 28 162-189 1-29 (128)
139 TIGR00068 glyox_I lactoylgluta 81.8 8.2 0.00018 29.0 7.1 56 92-148 85-142 (150)
140 cd07262 Glo_EDI_BRP_like_19 Th 81.1 7.3 0.00016 27.8 6.4 49 163-212 1-54 (123)
141 cd07253 Glo_EDI_BRP_like_2 Thi 80.8 7 0.00015 27.5 6.2 29 162-190 3-32 (125)
142 cd08344 MhqB_like_N N-terminal 80.4 8.8 0.00019 27.1 6.5 28 162-189 2-29 (112)
143 cd07240 ED_TypeI_classII_N N-t 79.2 11 0.00023 26.4 6.6 47 162-210 2-51 (117)
144 cd07268 Glo_EDI_BRP_like_4 Thi 78.7 28 0.00061 26.9 9.0 75 94-171 2-81 (149)
145 PRK11700 hypothetical protein; 78.7 27 0.00058 28.0 9.1 77 92-171 38-119 (187)
146 cd08360 MhqB_like_C C-terminal 78.5 14 0.0003 27.1 7.3 49 162-211 3-55 (134)
147 cd07237 BphC1-RGP6_C_like C-te 77.4 14 0.00031 28.0 7.3 51 161-211 8-67 (154)
148 PF12681 Glyoxalase_2: Glyoxal 77.0 11 0.00024 25.9 6.1 30 92-122 55-84 (108)
149 cd07265 2_3_CTD_N N-terminal d 76.5 15 0.00032 26.2 6.8 29 162-190 4-33 (122)
150 PF13468 Glyoxalase_3: Glyoxal 75.7 33 0.00072 26.5 9.1 90 92-182 76-173 (175)
151 cd07267 THT_Oxygenase_N N-term 74.3 19 0.00042 25.3 6.9 53 92-146 56-109 (113)
152 PRK09426 methylmalonyl-CoA mut 73.1 0.98 2.1E-05 43.6 -0.4 83 9-116 626-708 (714)
153 cd08359 Glo_EDI_BRP_like_22 Th 72.6 20 0.00043 25.2 6.6 25 96-121 69-93 (119)
154 cd07266 HPCD_N_class_II N-term 72.0 19 0.00041 25.4 6.4 29 162-190 4-33 (121)
155 cd08358 Glo_EDI_BRP_like_21 Th 71.4 38 0.00082 25.2 8.0 28 162-189 2-30 (127)
156 cd09012 Glo_EDI_BRP_like_24 Th 71.3 21 0.00045 25.5 6.5 25 164-188 2-26 (124)
157 cd02069 methionine_synthase_B1 71.3 1.5 3.2E-05 35.9 0.3 36 10-47 133-168 (213)
158 cd08351 ChaP_like ChaP, an enz 71.1 21 0.00046 25.5 6.5 48 162-211 4-52 (123)
159 cd08361 PpCmtC_N N-terminal do 70.8 20 0.00044 25.8 6.4 47 162-210 6-54 (124)
160 cd08363 FosB FosB, a fosfomyci 70.7 20 0.00043 26.2 6.4 26 163-188 1-27 (131)
161 cd07257 THT_oxygenase_C The C- 70.3 27 0.00058 26.4 7.2 54 92-146 66-124 (153)
162 cd07238 Glo_EDI_BRP_like_5 Thi 67.8 38 0.00082 23.5 7.3 28 94-122 58-85 (112)
163 cd08362 BphC5-RrK37_N_like N-t 66.2 28 0.0006 24.4 6.2 29 161-189 2-31 (120)
164 cd07239 BphC5-RK37_C_like C-te 66.0 32 0.00069 25.8 6.8 27 162-188 4-31 (144)
165 cd07247 SgaA_N_like N-terminal 65.9 42 0.0009 23.3 7.4 30 92-122 60-89 (114)
166 cd09013 BphC-JF8_N_like N-term 65.9 24 0.00051 25.1 5.8 55 92-146 61-117 (121)
167 PRK04101 fosfomycin resistance 65.9 31 0.00067 25.4 6.6 29 92-121 62-92 (139)
168 PRK06724 hypothetical protein; 65.3 28 0.00061 25.6 6.2 43 161-203 6-55 (128)
169 cd04883 ACT_AcuB C-terminal AC 65.0 15 0.00034 23.6 4.3 28 163-190 42-71 (72)
170 cd07264 Glo_EDI_BRP_like_15 Th 63.6 45 0.00097 23.4 7.0 26 95-121 73-98 (125)
171 cd08364 FosX FosX, a fosfomyci 63.0 40 0.00087 24.5 6.7 28 93-121 66-95 (131)
172 cd08345 Fosfomycin_RP Fosfomyc 62.6 26 0.00057 24.2 5.4 54 92-146 54-110 (113)
173 PF07063 DUF1338: Domain of un 62.4 10 0.00023 32.7 3.8 30 159-188 181-216 (302)
174 PRK09490 metH B12-dependent me 61.7 3.5 7.5E-05 42.2 0.8 84 10-118 796-879 (1229)
175 cd04882 ACT_Bt0572_2 C-termina 60.7 24 0.00053 21.9 4.6 26 162-187 39-64 (65)
176 cd07243 2_3_CTD_C C-terminal d 60.1 47 0.001 24.7 6.7 54 92-146 66-124 (143)
177 cd07244 FosA FosA, a Fosfomyci 59.7 53 0.0012 23.2 6.8 28 162-189 1-29 (121)
178 cd07258 PpCmtC_C C-terminal do 59.5 54 0.0012 24.5 7.0 55 92-146 55-113 (141)
179 cd08343 ED_TypeI_classII_C C-t 59.3 45 0.00097 24.1 6.4 48 164-211 1-53 (131)
180 cd07246 Glo_EDI_BRP_like_8 Thi 58.4 59 0.0013 22.5 6.8 29 93-122 68-96 (122)
181 cd02070 corrinoid_protein_B12- 58.1 2.4 5.2E-05 34.1 -0.8 36 10-47 127-162 (201)
182 cd08349 BLMA_like Bleomycin bi 57.8 51 0.0011 22.5 6.3 26 92-118 57-82 (112)
183 cd07250 HPPD_C_like C-terminal 55.4 19 0.0004 28.7 3.9 29 92-121 82-110 (191)
184 cd02071 MM_CoA_mut_B12_BD meth 53.8 2.7 5.8E-05 31.0 -1.1 36 10-47 44-79 (122)
185 cd07251 Glo_EDI_BRP_like_10 Th 52.3 53 0.0012 22.8 5.7 44 166-211 2-46 (121)
186 COG0346 GloA Lactoylglutathion 52.2 23 0.0005 24.4 3.7 28 162-189 2-30 (138)
187 cd08354 Glo_EDI_BRP_like_13 Th 51.9 78 0.0017 21.9 7.5 47 164-211 2-49 (122)
188 cd07256 HPCD_C_class_II C-term 49.8 92 0.002 23.6 7.0 27 162-188 3-30 (161)
189 cd09014 BphC-JF8_C_like C-term 49.6 1.2E+02 0.0025 23.2 7.6 28 161-188 5-33 (166)
190 TIGR02082 metH 5-methyltetrahy 48.0 7.4 0.00016 39.8 0.6 83 10-117 777-859 (1178)
191 cd08357 Glo_EDI_BRP_like_18 Th 45.6 1E+02 0.0022 21.5 6.3 25 165-189 2-27 (125)
192 cd04895 ACT_ACR_1 ACT domain-c 44.6 58 0.0012 21.8 4.4 35 173-207 15-55 (72)
193 TIGR02370 pyl_corrinoid methyl 41.3 6.4 0.00014 31.7 -0.8 36 10-47 129-164 (197)
194 cd07254 Glo_EDI_BRP_like_20 Th 40.8 1.2E+02 0.0027 21.1 7.4 55 92-146 57-116 (120)
195 PRK09732 hypothetical protein; 39.8 86 0.0019 23.7 5.2 33 173-213 16-48 (134)
196 cd04906 ACT_ThrD-I_1 First of 38.2 66 0.0014 21.8 4.1 27 163-189 41-71 (85)
197 cd08350 BLMT_like BLMT, a bleo 38.1 1.2E+02 0.0027 21.2 5.7 24 95-119 60-83 (120)
198 cd02067 B12-binding B12 bindin 36.3 9.3 0.0002 27.6 -0.6 35 10-46 44-78 (119)
199 cd09011 Glo_EDI_BRP_like_23 Th 36.1 1.5E+02 0.0033 20.7 6.8 53 93-146 64-118 (120)
200 cd07261 Glo_EDI_BRP_like_11 Th 33.4 1.6E+02 0.0035 20.2 6.4 29 92-121 58-89 (114)
201 cd08355 Glo_EDI_BRP_like_14 Th 32.1 1.8E+02 0.0038 20.3 7.2 29 93-122 68-96 (122)
202 KOG4657 Uncharacterized conser 31.7 33 0.00071 28.4 1.8 20 102-121 145-164 (246)
203 PF00583 Acetyltransf_1: Acety 31.5 54 0.0012 21.1 2.7 26 92-118 57-83 (83)
204 COG3193 GlcG Uncharacterized p 30.8 1.5E+02 0.0032 22.7 5.2 33 173-213 17-49 (141)
205 PF14696 Glyoxalase_5: Hydroxy 30.3 2.5E+02 0.0053 21.4 6.8 56 92-148 72-127 (139)
206 PF13176 TPR_7: Tetratricopept 29.0 44 0.00095 18.6 1.6 18 100-117 11-28 (36)
207 PF02208 Sorb: Sorbin homologo 28.2 14 0.00031 22.5 -0.6 22 94-115 12-33 (47)
208 PF06923 GutM: Glucitol operon 27.6 97 0.0021 22.5 3.6 44 170-213 23-71 (109)
209 cd04897 ACT_ACR_3 ACT domain-c 27.3 1.6E+02 0.0035 19.8 4.4 36 173-208 15-56 (75)
210 COG4747 ACT domain-containing 26.2 65 0.0014 24.0 2.4 86 94-190 42-136 (142)
211 PTZ00330 acetyltransferase; Pr 26.0 88 0.0019 22.7 3.3 27 93-122 115-141 (147)
212 PF08445 FR47: FR47-like prote 26.0 1.3E+02 0.0028 20.4 3.9 24 98-122 59-82 (86)
213 PF14907 NTP_transf_5: Unchara 25.9 2.1E+02 0.0046 23.0 5.9 47 164-211 95-143 (249)
214 cd04908 ACT_Bt0572_1 N-termina 25.3 1.4E+02 0.0029 18.9 3.7 24 165-188 42-65 (66)
215 KOG2741 Dimeric dihydrodiol de 23.9 40 0.00086 29.8 1.1 24 166-189 105-128 (351)
216 PF09142 TruB_C: tRNA Pseudour 23.8 1.4E+02 0.003 18.8 3.4 41 172-213 5-45 (56)
217 cd04885 ACT_ThrD-I Tandem C-te 23.6 1.3E+02 0.0028 19.3 3.3 26 162-187 38-66 (68)
218 PRK06704 RNA polymerase factor 21.8 60 0.0013 26.7 1.8 42 167-210 183-226 (228)
219 PF12687 DUF3801: Protein of u 21.4 2.1E+02 0.0046 23.1 4.9 45 159-203 30-79 (204)
220 PF00379 Chitin_bind_4: Insect 21.3 1.7E+02 0.0038 17.7 3.5 16 196-211 30-45 (52)
221 COG0264 Tsf Translation elonga 21.2 1E+02 0.0022 26.6 3.0 42 172-213 33-82 (296)
222 PF13508 Acetyltransf_7: Acety 21.2 73 0.0016 20.7 1.8 20 97-119 60-79 (79)
223 PRK10146 aminoalkylphosphonic 20.8 90 0.002 22.5 2.4 28 92-120 108-136 (144)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=2.8e-20 Score=141.84 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=91.7
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCC-----------CCceEEEEEE--CCeEEEEEecCCCCCCCC--
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLSG-- 155 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~-----------~~~~~~~l~~--g~~~l~l~~~~~~~~~~~-- 155 (214)
+.+++||+|.|.|++++++||++ |||++.......+ .....+++.. |+..++++.+..+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 9998865432111 1223344543 556889988655433221
Q ss_pred -CCCCCCcceEEEEEECCHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEee
Q 028083 156 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 156 -~~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
...++.|++|+||+|+|+++++++|+++|+++..++ .+.+.+||+||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 133466889999999999999999999999986432 457889999999999999984
No 2
>PRK11478 putative lyase; Provisional
Probab=99.85 E-value=8.6e-20 Score=136.55 Aligned_cols=121 Identities=23% Similarity=0.361 Sum_probs=87.8
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
.+.+++||+|.|+|++++++||+++|||++...............+.. ++..++++....+...... ....++.|++|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~g~~hi~f 81 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR-PEACGLRHLAF 81 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC-CCCCceeEEEE
Confidence 457899999999999999999999999998743221111111112333 4556777765433221111 13356789999
Q ss_pred EECCHHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEe
Q 028083 169 AIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 169 ~V~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~ 211 (214)
.|+|+++++++|++.|+++.+. ..|.+.+||+|||||.|||+|
T Consensus 82 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 82 SVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999998643 246788999999999999997
No 3
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=3e-19 Score=131.80 Aligned_cols=119 Identities=27% Similarity=0.436 Sum_probs=88.0
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
.+++||+|.|.|++++++||+++|||++.............+.+.. ++..++++...........+ .+.+++|++|+|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYP-EACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCC-cCCCceEEEEEe
Confidence 5799999999999999999999999998865332222222233433 55677776554332211111 345789999999
Q ss_pred CCHHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEe
Q 028083 171 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~ 211 (214)
+|+++++++++++|+++.+. ..+.+.+|++||+||+|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999997643 235678999999999999986
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.83 E-value=4.2e-19 Score=142.16 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-------------------CCeEEEEEecCCCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPDP 152 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-------------------g~~~l~l~~~~~~~~ 152 (214)
.++.|++|.|.|+++|++||+++|||++..+...+......+|+.. ++..++|+......+
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 5899999999999999999999999999866443344444555532 345788887654332
Q ss_pred -C-CC-C---CCCCCcceEEEEEECCHHHHHHHHHhCCCeEEeecC---CceEEEEEcCCCCeEEEEeec
Q 028083 153 -L-SG-R---PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 153 -~-~~-~---~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+ .. . +..+.|++|+||.|+|+++++++|+++|+++...+. +...+|++|||||+|||++..
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 1 11 1 112358899999999999999999999999875432 345678899999999999864
No 5
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=3.3e-19 Score=139.95 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=91.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee----cCC--------------CCCCceEEEEEEC-CeEEEEEecCCCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA----RPH--------------DKLPYRGAWLWVG-AEMIHLMELPNPDP 152 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~----~~~--------------~~~~~~~~~l~~g-~~~l~l~~~~~~~~ 152 (214)
.+++||+|.|.|+++|++||+++|||++..+ .+. .......+++..+ +..+++++..++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 5899999999999999999999999988531 110 0112445666654 46799998876554
Q ss_pred CCCC-CCCCCcceEEEEEECCHHHHHHHHHhCCCeEEeec-----C---CceEEEEEcCCCCeEEEEeec
Q 028083 153 LSGR-PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 153 ~~~~-~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~-----~---g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+... ...+.|.+|+||.|+|+++++++++++|+++.... . +.+.+|++|||||.|||++.+
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 4332 12357889999999999999999999998753211 1 247899999999999999864
No 6
>PLN02367 lactoylglutathione lyase
Probab=99.82 E-value=4.8e-19 Score=145.37 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=93.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE------------------C-CeEEEEEecCCCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV------------------G-AEMIHLMELPNPDP 152 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~------------------g-~~~l~l~~~~~~~~ 152 (214)
-.+.|++|.|.|++++++||+++|||++..+...+...+..+|+.. + +..++|+...+.+.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 4799999999999999999999999999876554455566667642 1 34788887665442
Q ss_pred --CCC-C-CCC--CCcceEEEEEECCHHHHHHHHHhCCCeEEeecC-C--ceEEEEEcCCCCeEEEEeec
Q 028083 153 --LSG-R-PEH--GGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS-G--RPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 153 --~~~-~-~~~--g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~~-g--~~~~~~~DPdG~~iEl~~~~ 213 (214)
... . ... ..|.+||||.|+|+++++++|+++|+++...+. + ...+|++|||||+|||+|..
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 211 1 112 258999999999999999999999999875432 2 45789999999999999864
No 7
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.82 E-value=3.6e-19 Score=135.43 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=89.9
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCC--CCCCCcceEEEEEEC
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIAIR 171 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~--~~~g~g~~hiaf~V~ 171 (214)
++|++|.|.|++++++||+++|||++....... .....++..|+..+.+.......+.... ..++.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999998654322 1234456667777777654433222111 235678899999999
Q ss_pred CHHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEeec
Q 028083 172 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+++++++|+++|+++..+ ..+.+.++++||||+.|||+|..
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 9999999999999998633 24568999999999999999854
No 8
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.1e-18 Score=129.14 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=84.5
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 171 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~ 171 (214)
+++||+|.|.|++++++||+++|||++..............|+.. ++..++++......... ......|..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 478999999999999999999999998643221222334556666 45677887643322111 1123356899999996
Q ss_pred ---CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEE
Q 028083 172 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 172 ---dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~ 210 (214)
|+++++++|+++|+++...+ .|.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999987532 3455678999999999983
No 9
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.81 E-value=1.2e-18 Score=131.76 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=86.1
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCC-CceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~-~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
|+.+++||.|.|+|++++++||+++|||++......... .....|+..|+..+.+.....+ ...+++|+||
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEE
Confidence 568999999999999999999999999988755322111 1112344456666666532221 1235799999
Q ss_pred EEC--CHHHHHHHHHhCCCeEEeec---C-CceEEEEEcCCCCeEEEEee
Q 028083 169 AIR--DVSKLKMILDKAGISYTLSK---S-GRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 169 ~V~--dv~~~~~~l~~~G~~~~~~~---~-g~~~~~~~DPdG~~iEl~~~ 212 (214)
.|+ |+++++++|+++|+++.++. . +++.+||+|||||.|||.+.
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 998 79999999999999986442 2 37899999999999999864
No 10
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.81 E-value=1.6e-18 Score=133.38 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=82.2
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCC-CCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPH-DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~-~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
.+.+++||+|.|+|++++.+||+++|||++...... .+......|+..++. .+.+..... .+++++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~--------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG--------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC--------CCCCceEEEE
Confidence 357899999999999999999999999998754322 121223567765543 222222111 1246899999
Q ss_pred EECCHHH---HHHHHHhCCCeEEeec--C---CceEEEEEcCCCCeEEEEe
Q 028083 169 AIRDVSK---LKMILDKAGISYTLSK--S---GRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 169 ~V~dv~~---~~~~l~~~G~~~~~~~--~---g~~~~~~~DPdG~~iEl~~ 211 (214)
.|+|+++ ++++|+++|+++..++ + ++.++||.|||||+|||++
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 9998777 6789999999986432 2 3678999999999999965
No 11
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.80 E-value=5.2e-19 Score=131.71 Aligned_cols=119 Identities=20% Similarity=0.423 Sum_probs=88.8
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCC--CCCCCcceEEEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIAI 170 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~--~~~g~g~~hiaf~V 170 (214)
+++|++|.|.|++++++||+++|||++.............+++..++..+++............ ..++.+++|+||+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 5799999999999999999999999987543222223456677778788888765333222111 22356788999999
Q ss_pred CCHHHHHHHHHhCCCeEEee--c---CCceEEEE--EcCCCCeEEEEe
Q 028083 171 RDVSKLKMILDKAGISYTLS--K---SGRPAIFT--RDPDANALEFTQ 211 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~--~---~g~~~~~~--~DPdG~~iEl~~ 211 (214)
+|+++++++++++|+++..+ . .|.+.+|+ +||||+.||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999998642 2 23456666 799999999975
No 12
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.80 E-value=1.8e-18 Score=132.01 Aligned_cols=113 Identities=23% Similarity=0.356 Sum_probs=88.1
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
|+.+++||.|.|+|++++++||+++|||++....+ ..+|+..++..+.+...... + ....+.+.+|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~--~--~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDI--P--RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCC--C--CccCCCCeeEEEEE
Confidence 57899999999999999999999999999985422 24667777766665432211 1 11124567899999
Q ss_pred EC--CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEee
Q 028083 170 IR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 170 V~--dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
++ |+++++++++++|+++...+ .+++.+||+|||||+|||++-
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 99999999999999985332 357999999999999999863
No 13
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=2.5e-18 Score=126.81 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=85.9
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC----eEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
++||+|.|+|++++.+||+++|||++....+..+.....+|+..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5899999999999999999999999886544333334456676543 4566654332211 11234467899999
Q ss_pred ECCHHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEE
Q 028083 170 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 170 V~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~ 210 (214)
|+|+++++++++++|+++..++ .+++.+||+|||||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999987553 3467899999999999985
No 14
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=3.3e-18 Score=126.19 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=88.2
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
|++++|+.|.|.|++++++||+++|||++....+.. ...++..++..+.+........+ .....+.+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 468999999999999999999999999998653211 23456677777777654332211 1122456789999999
Q ss_pred CC-HHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEee
Q 028083 171 RD-VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 171 ~d-v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~~ 212 (214)
++ +++++++++++|+++...+ .+++.+||+|||||+||++++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 84 9999999999999875322 125789999999999999874
No 15
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.79 E-value=3.6e-18 Score=131.96 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=86.2
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--e--EEEEEecCCCCCCCCCCCCCCcce
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDR 164 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~--~l~l~~~~~~~~~~~~~~~g~g~~ 164 (214)
...++++||.|.|.|++++.+||+++|||++......+......+|+..++ . .+.+....... ....+.+..
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~g~~ 88 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE----KYDLGNGFG 88 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC----cccCCCcee
Confidence 345899999999999999999999999999876543223333445555432 1 23332211111 112345788
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEeec----C-CceEEEEEcCCCCeEEEEeec
Q 028083 165 HTCIAIRDVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|++|.|+|+++++++|.++|+++...+ . +.+.+||+|||||+|||++..
T Consensus 89 hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 89 HIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred EEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 999999999999999999999875432 2 246789999999999999864
No 16
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.79 E-value=2.3e-18 Score=124.41 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=85.6
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCe-EEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
++|++|.|+|++++.+||+++|||++....... ...+|+..++. .+++......... +..+++..|++|+|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999987543221 23367777654 6777765443321 2234567899999999
Q ss_pred HHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEE
Q 028083 173 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 209 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl 209 (214)
+++++++++++|+++.... .+.+.+++.|||||+|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999986543 457889999999999996
No 17
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.1e-17 Score=124.95 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=88.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhc---CCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~L---Gf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+++||+|.|.|++++++||+++| ||++....+ . ...|... ++..+.+.......+. .....+.+++|+||
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 58999999999999999999999 999986542 1 2245443 6677888766554332 12234567899999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEee
Q 028083 169 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 169 ~V~---dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~~ 212 (214)
.|+ |+++++++++++|+++.... .+.+.+|++|||||+|||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 58999999999999986432 246899999999999999864
No 18
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.77 E-value=1.2e-17 Score=130.56 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=85.0
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC---CeEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
|++||+|.|+|++++.+||+++|||++....+ ....|+..+ +..+.++....... .....++++|+||.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQPR---GRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCCC---CcccCCceEEEEEE
Confidence 58999999999999999999999999986543 123444433 45677766431111 11123567899999
Q ss_pred ECC---HHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~d---v~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+| +++++++|++.|+.+.+.. .+.+.+||+|||||.|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 997 9999999999999865432 3467899999999999999854
No 19
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.8e-17 Score=124.08 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=82.2
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
++.+++||.|.|+|++++.+||+++|||++....+ ...|+..++....+...... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEEEE
Confidence 56899999999999999999999999999875422 24677765432222221111 235789999
Q ss_pred ECC---HHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+| +++++++++++|+++..+. .+.+++||+|||||.||++..+
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 985 9999999999999986532 3366789999999999998754
No 20
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=5.3e-18 Score=131.81 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=80.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCC-CCCceEEEEEECCe--EEEE--EecCCCCCCCCCCCCCCcceEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHL--MELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~-~~~~~~~~l~~g~~--~l~l--~~~~~~~~~~~~~~~g~g~~hia 167 (214)
+++||+|.|+|++++++||+++|||++......+ ......+|+..++. .+.. +... ...+++++|+|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--------~~~~~g~~Hia 72 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA--------QGPESGVHHAA 72 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh--------cCCCCceeEEE
Confidence 5899999999999999999999999987543221 12235677776431 1110 0000 01146789999
Q ss_pred EEECCHHHHH---HHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEe
Q 028083 168 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 168 f~V~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~ 211 (214)
|.|+|++++. ++|+++|+++.+++ ....++|++|||||+|||+.
T Consensus 73 f~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 73 FEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred EEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 9999999886 99999999987542 12457899999999999985
No 21
>PRK10291 glyoxalase I; Provisional
Probab=99.77 E-value=9e-18 Score=126.22 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=80.7
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC----eEEEEEecCCCCCCCCCCCCCCcceEEEEEECCH
Q 028083 98 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 173 (214)
Q Consensus 98 ~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv 173 (214)
+|.|.|+++|.+||+++|||++......+....+.+|+..++ ..+++..... ......+.+.+|+||.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG----VDKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCC----CCCCcCCCCeeEEEEEeCCH
Confidence 378999999999999999999886544444445667776543 1234432111 11122456788999999999
Q ss_pred HHHHHHHHhCCCeEEeec----CC-ceEEEEEcCCCCeEEEEee
Q 028083 174 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 174 ~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~iEl~~~ 212 (214)
++++++|+++|+++...+ .+ .+.+||+|||||+|||++.
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999876421 23 3567889999999999985
No 22
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.77 E-value=9.3e-18 Score=126.99 Aligned_cols=110 Identities=23% Similarity=0.394 Sum_probs=85.2
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC--
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 171 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~-- 171 (214)
|+||.|.|+|++++.+||+++|||++....+ ..+++..++..+.+...... + .....++++|++|.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~--~--~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDI--P--RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCC--C--cCCcCccceEEEEEecHH
Confidence 6899999999999999999999999875322 23456777777776554321 1 1122456799999998
Q ss_pred CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEeec
Q 028083 172 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|++++++++++.|+++..++ .+++.+||+|||||+|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 59999999999999976432 3578999999999999998753
No 23
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.77 E-value=9.6e-18 Score=124.55 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=89.6
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCC-CCCceEEEEEECCeEEEEEecCCCCCCCC--CCCCCCcceEEEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 170 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~-~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~~~~g~g~~hiaf~V 170 (214)
++||.|.|.|++++++||+++|||++....+.. +......|+..++..+.++.+........ ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 589999999999999999999999998654432 22344567888888888887654333221 123567889999999
Q ss_pred CCHHHHHHHHHhCCCeEEeec----CCceEEEEEcCC---CCeEEEEe
Q 028083 171 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 211 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPd---G~~iEl~~ 211 (214)
+|+++++++++++|+++..++ .++..+++.||+ |+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999986543 235556666555 99999985
No 24
>PLN02300 lactoylglutathione lyase
Probab=99.77 E-value=1.5e-17 Score=141.74 Aligned_cols=122 Identities=25% Similarity=0.335 Sum_probs=90.0
Q ss_pred cceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--e--EEEEEecCCCCCCCCCCCCCCcc
Q 028083 88 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRD 163 (214)
Q Consensus 88 ~~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~--~l~l~~~~~~~~~~~~~~~g~g~ 163 (214)
.+.+.+++||+|.|+|++++++||+++|||++..............|+..++ . .+.+...... .....+.+.
T Consensus 19 ~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~~~~~~g~ 94 (286)
T PLN02300 19 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV----DKYDIGTGF 94 (286)
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC----CccccCCCc
Confidence 4678999999999999999999999999999976433223334456776543 2 2333321111 112245678
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEEeec----CC-ceEEEEEcCCCCeEEEEeec
Q 028083 164 RHTCIAIRDVSKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~iEl~~~~ 213 (214)
.|++|.|+|+++++++++++|+++...+ .+ .+.+||+|||||.|||++..
T Consensus 95 ~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 95 GHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred cEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 8999999999999999999999876432 22 46789999999999999864
No 25
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.76 E-value=2.3e-17 Score=129.92 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=84.1
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+.|.+++|++|.|+|++++++||+++|||++..............|+..++....+........ ..++++|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG------ARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC------CCCCceEEEE
Confidence 4578999999999999999999999999998755332223334567766443222222211111 1246799999
Q ss_pred EECC---HHHHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEee
Q 028083 169 AIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 169 ~V~d---v~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
.|+| +++++++|+++|+++...+ ....++|++|||||+|||++.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9985 5588899999999975332 224579999999999999876
No 26
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=2e-18 Score=127.63 Aligned_cols=117 Identities=25% Similarity=0.438 Sum_probs=85.2
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecC--CCCCCceEEEEEECCeEEEEEecCCCCCCCCCCC-CCCcceEEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 169 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~--~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~-~g~g~~hiaf~ 169 (214)
||+||+|.|+|++++.+||+++|||++..... .........++..++..+.+.....+........ ...+.+|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999996544 2223334566777777777776655543321110 00144677777
Q ss_pred EC---CHHHHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEE
Q 028083 170 IR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEF 209 (214)
Q Consensus 170 V~---dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl 209 (214)
+. |+++++++|++.|+++.+++ .....+|++|||||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76 78889999999999987553 235567899999999997
No 27
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=4.8e-17 Score=120.80 Aligned_cols=112 Identities=29% Similarity=0.369 Sum_probs=84.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--eEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
++++||.|.|.|++++++||+++|||++....+ ..+++..++ ..+.+...... . .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~--~-~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDA--P-PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCC--C-cccCCCCcEEEEEEE
Confidence 479999999999999999999999999986522 235666655 34555443322 1 112234567899999
Q ss_pred EC---CHHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEee
Q 028083 170 IR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 170 V~---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|+ |+++++++++++|+++..+. ...+.+||+|||||+|||.+.
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEe
Confidence 98 59999999999999876432 225789999999999999864
No 28
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.76 E-value=3e-17 Score=121.89 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=80.6
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CC-eEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~-~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+.+++||.|.|+|++++.+||+++|||++....+. ..+|+.. ++ ....+..... ...+.+|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~---------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREA---------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccC---------CCCCeeEEEE
Confidence 47899999999999999999999999998765321 1245554 21 1122221111 1246789999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEeec
Q 028083 169 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 169 ~V~---dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
.|+ |+++++++++++|+++...+ ..++.+||+|||||+|||++..
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 997 89999999999999986432 2367899999999999998753
No 29
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=4.1e-17 Score=119.16 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=82.5
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC---CeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
||+|.|.|++++++||+++|||++....+... ....+++..+ +..+++.....+... .....++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAAM--SGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCcccc--ccccCCCceEEEEEehH
Confidence 89999999999999999999999986643111 2222223332 334555544333211 22345667899999999
Q ss_pred HHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEe
Q 028083 173 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~ 211 (214)
+++++++++++|+++..++ .+++.+|++|||||+|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999987543 34789999999999999975
No 30
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=4.6e-17 Score=119.70 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=80.7
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
|.+++||.|.|+|+++|.+||++ |||++..... ..+|+..++....+...... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKG--------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccC--------CcCcccEEEEEE
Confidence 46899999999999999999999 9999875422 24677654322232222111 124678999999
Q ss_pred CCHHHHHHHHHhCCCeEEee---cCCceEEEEEcCCCCeEEEEe
Q 028083 171 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~iEl~~ 211 (214)
+|.+++.+.+++.|+..... +.+++.+||+|||||.|||+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999987543 345789999999999999975
No 31
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.75 E-value=5.8e-17 Score=118.61 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=82.9
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC-eEEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
+.|+.|.|+|++++++||+++|||++..... .. ...+++..++ ..+.++...... ...+...|++|.|+|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCC
Confidence 4799999999999999999999999975443 11 2334566664 445555443332 122345799999999
Q ss_pred HHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 173 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
+++++++|+++|+++..++ .+++.++++|||||.|||+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999987443 25789999999999999986
No 32
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.75 E-value=4.3e-17 Score=121.02 Aligned_cols=110 Identities=20% Similarity=0.280 Sum_probs=81.8
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC-eEEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
|.+.+++|+.|.|+|++++.+||+++|||++....+ ..+|+..++ ...+.+..... ...+++|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~--------~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES--------PEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC--------CCCceEEEE
Confidence 456899999999999999999999999999886532 235665532 11111111111 124689999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEee---cCCceEEEEEcCCCCeEEEEee
Q 028083 168 IAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 168 f~V~---dv~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|.|+ |+++++++++++|+++.+. +..+..+||+|||||.||++..
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 9997 6889999999999987532 2346789999999999999864
No 33
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=1.1e-16 Score=118.65 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=84.1
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHHH
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 176 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~~ 176 (214)
-.|.|.|++++++||+++|||++....+.+......+.+..++..+.+...............+++..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46889999999999999999999865433333323345677776666654433221111112334557999999999999
Q ss_pred HHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEee
Q 028083 177 KMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 177 ~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+++++++|+++..++ .|.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 999999999986432 467889999999999999864
No 34
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=2.9e-17 Score=121.43 Aligned_cols=116 Identities=21% Similarity=0.406 Sum_probs=84.2
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCC-CceEEEEEE----CCeEEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~-~~~~~~l~~----g~~~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
+++||+|.|.|++++++||+++|||++....+.... .....++.. ++..+.++........ ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 579999999999999999999999998865432221 122233332 3456777765433221 122335678999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEee--cCCceEEEEEcCCCCeEEEE
Q 028083 168 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 168 f~V~---dv~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~iEl~ 210 (214)
|.|+ |+++++++++++|+++... ..+.+.+||+|||||+|||.
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 5799999999999987543 34678999999999999984
No 35
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.75 E-value=5.4e-17 Score=120.56 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=81.4
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 171 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~ 171 (214)
+++.||+|.|+|+++|.+||+++|||++....+ . ...|+..++..+.+.....+ ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCCceEEEEEeCC---------CCceeEEEEEEC
Confidence 368999999999999999999999999875422 1 24566665544444332221 135689999997
Q ss_pred ---CHHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEeec
Q 028083 172 ---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 172 ---dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+++++++|+++|+++...+ .+++++||+|||||.|||+.-+
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 59999999999999987532 2357899999999999998643
No 36
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.74 E-value=8e-17 Score=126.16 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=79.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 171 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~ 171 (214)
++++||+|.|+|++++++||+++|||++..............|+..++....+.... . .+++++|+||.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~-~--------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTG-G--------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEec-C--------CCCceeEEEEEcC
Confidence 689999999999999999999999999875432222223446665543222221111 1 2346899999998
Q ss_pred C---HHHHHHHHHhCCCeE--Eee--c---CCceEEEEEcCCCCeEEEEee
Q 028083 172 D---VSKLKMILDKAGISY--TLS--K---SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 172 d---v~~~~~~l~~~G~~~--~~~--~---~g~~~~~~~DPdG~~iEl~~~ 212 (214)
| +++++++|+++|+.. ... . .+.+++||+|||||.|||++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 888899999999863 221 1 235689999999999999853
No 37
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.74 E-value=5.1e-17 Score=120.77 Aligned_cols=106 Identities=26% Similarity=0.424 Sum_probs=81.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC-
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 171 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~- 171 (214)
+++||.|.|+|++++.+||+++|||++....+ ...|+..++..+.+...... ...++..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-------~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANV-------GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCC-------CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999876533 12566666655544322211 01345789999994
Q ss_pred -CHHHHHHHHHhCCCeEEeec-CCceEEEEEcCCCCeEEEEe
Q 028083 172 -DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 172 -dv~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~iEl~~ 211 (214)
|+++++++++++|+++.... ..++.+||.|||||+|||++
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHV 109 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEe
Confidence 89999999999999876443 34679999999999999986
No 38
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.74 E-value=1.8e-16 Score=119.52 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=84.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC---CeEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
+|+||.|.|+|++++++||+++|||++....+. ....|+..+ +..+.++....... .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 589999999999999999999999998865432 134566554 23566655433211 1234567899999
Q ss_pred ECCHH---HHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRDVS---KLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~dv~---~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+|++ ++++++.+.|+++.... .+++.+|++|||||+|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 99765 58899999999876532 3478899999999999999753
No 39
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=9.5e-17 Score=121.67 Aligned_cols=106 Identities=20% Similarity=0.349 Sum_probs=79.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--e--EEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~--~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
.+++||+|.|.|++++.+||+++|||++..... ...+|+..++ . .+.+..... ...+++|+|
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCCC---------CCCcceEEE
Confidence 579999999999999999999999999875432 1346776642 2 333332211 135789999
Q ss_pred EEECCHHHHH---HHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEe
Q 028083 168 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 168 f~V~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~ 211 (214)
|.|+|++++. ++|+++|+++...+ .+.+++||+||+||+|||..
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 9999888665 69999999976432 23567999999999999985
No 40
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=7.2e-17 Score=125.54 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=82.4
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCC---CCCceEEEEEECCe--EEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~---~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
++++||+|.|+|++++.+||+++|||++....... +.....+|++.++. .+.+... + .+.+++|+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~--~--------~~~g~~Hi 77 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG--P--------GPKRIHHL 77 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC--C--------CCceeEEE
Confidence 68999999999999999999999999987532211 12334667776542 2333221 1 13578999
Q ss_pred EEEECCHH---HHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEee
Q 028083 167 CIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 167 af~V~dv~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+|.|+|++ +++++|+++|+++.... .+.+.+|++|||||+|||...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 99998655 68999999999986432 246889999999999999753
No 41
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.74 E-value=8.4e-17 Score=118.67 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=81.9
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
+.+|+|+.|.|+|++++++||+++|||++....+ ..+|+..++...+++...... .++..|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSD--------RNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCC--------CCCCceEEEEe
Confidence 4689999999999999999999999999875432 235666544333333322111 13568999999
Q ss_pred C---CHHHHHHHHHhCCCeEEeec------CCceEEEEEcCCCCeEEEEeec
Q 028083 171 R---DVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 171 ~---dv~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+ ++++++++++++|+++..++ .+++.++|+||+||.|||++..
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5 78999999999999986432 2478899999999999998743
No 42
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.73 E-value=1.4e-16 Score=118.82 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=80.7
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
..+++|+.|.|.|+++|++||+++|||+...... ..+++.. ++..+.+..... ..+..|++|.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~ 65 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFL 65 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCC----------CCCcceEEEE
Confidence 3689999999999999999999999999876321 1233443 333455443211 1235799999
Q ss_pred EC--CHHHHHHHHHhCCCeEEee-----------cCCceEEEEEcCCCCeEEEEeec
Q 028083 170 IR--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~--dv~~~~~~l~~~G~~~~~~-----------~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+ |+++++++++++|+++... ..|++.+||+|||||.|||++.|
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 97 6999999999999997432 24679999999999999999875
No 43
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=4.2e-16 Score=114.85 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.0
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHHH
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 176 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~~ 176 (214)
..|+|.|++++.+||+++|||++.............+++..++..+.+........ .....+++..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 45889999999999999999999865432233333445677777777764322211 1112345567999999999999
Q ss_pred HHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEe
Q 028083 177 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 177 ~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~ 211 (214)
++++.+.|+++..+ ..|.+.++++|||||.|||.|
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999987543 346789999999999999986
No 44
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.8e-16 Score=117.49 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=76.6
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
++.|+.|.|.|+++|.+||+++|||++....+ . . ..+ .++..+.+...............+.+..|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~---~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E---N-VTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c---e-EEE-eccceeccchhhhccCCcccccccCCceEEEEEehh
Confidence 68899999999999999999999999875322 1 1 112 223222221110000000111123445799999999
Q ss_pred HHHHHHHHHhCCC-eEEee----cCCceEEEEEcCCCCeEEEEee
Q 028083 173 VSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 173 v~~~~~~l~~~G~-~~~~~----~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+++++++|+++|. ++..+ +.|.+.++|+|||||.|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999985 56432 2467899999999999999875
No 45
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.72 E-value=2e-16 Score=115.88 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=82.8
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC-CeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
++++|+.|.|.|++++.+||+++|||++....+ ..+|+..+ +..+.+.....+ ..+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEc
Confidence 378999999999999999999999999986542 23677765 333333322111 13578999999
Q ss_pred C---CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEeec
Q 028083 171 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 171 ~---dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+ ++++++++++++|+++...+ .+++.+||.||+||+||++...
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEcc
Confidence 8 68999999999999986543 3578999999999999998643
No 46
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.7e-16 Score=116.64 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCC--CCC----CCCCCCCcceEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD--PLS----GRPEHGGRDRHTC 167 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~--~~~----~~~~~g~g~~hia 167 (214)
+.|+.|+|.|++++.+||+++|||++....+.. ....+..++..+.+....... ... ..+...++..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 469999999999999999999999987533211 112244555555554332111 000 1111223346899
Q ss_pred EEECCHHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEee
Q 028083 168 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 168 f~V~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|.|+|++++++++.++|+++..+ ..|.+.++++|||||.|||.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999999987543 2456789999999999999874
No 47
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.72 E-value=1.4e-16 Score=116.26 Aligned_cols=104 Identities=23% Similarity=0.414 Sum_probs=79.4
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC--CH
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 173 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~--dv 173 (214)
||.|.|+|++++.+||+++|||++....+ ...|+..++..+.+....... ..+.+.+|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQ------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcC------CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999875432 235566666555544332211 12345689999995 79
Q ss_pred HHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 174 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 174 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
++++++++++|+++.... .+++.+|++|||||+|||++
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 999999999999986431 25789999999999999985
No 48
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.71 E-value=5.7e-16 Score=132.64 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=81.8
Q ss_pred cceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCc-eEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 88 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 88 ~~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~-~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
.+.+++++||+|.|+|++++.+||+++|||++........... ...|+..++.. +.+..... + ..++++|+
T Consensus 140 ~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~-~~g~~~Hi 211 (303)
T TIGR03211 140 GVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKA-HDIAFVGD------P-EPGKLHHV 211 (303)
T ss_pred CcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCC-cccceecC------C-CCCceEEE
Confidence 4557899999999999999999999999999875432222222 34566554321 11111111 0 11348999
Q ss_pred EEEECC---HHHHHHHHHhCCCeEEeec--C---CceEEEEEcCCCCeEEEEe
Q 028083 167 CIAIRD---VSKLKMILDKAGISYTLSK--S---GRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 167 af~V~d---v~~~~~~l~~~G~~~~~~~--~---g~~~~~~~DPdG~~iEl~~ 211 (214)
||.|+| +++++++|+++|+++..++ . +.+++||+|||||+|||++
T Consensus 212 af~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 212 SFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 999996 6668899999999986543 2 2579999999999999973
No 49
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=5.9e-16 Score=114.06 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=78.5
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--eEEEEEecCCCCCC-CCCCCCCCcceEEEEEECC
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~-~~~~~~g~g~~hiaf~V~d 172 (214)
+..|.|+|++++.+||+++|||++....+ ....+..++ ..+.+........+ ...+..+.+ .|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQG-LILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCce-EEEEEEECC
Confidence 57899999999999999999999886422 223455443 34445433222111 111223344 489999999
Q ss_pred HHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 173 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
+++++++++++|+++..++ .|.+.++++|||||+|||+|
T Consensus 77 id~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999999875432 45689999999999999986
No 50
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.71 E-value=6.1e-16 Score=116.61 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=81.0
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeE--EEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~--l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
+||.|.|+|++++.+||+++|||++......+ .....+|+..++.. +.+... . ..+++.|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~--------~~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPG--P--------ERPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcC--C--------CCCCeeEEEEEcCC
Confidence 69999999999999999999999987553322 22355677765532 333321 1 13568999999998
Q ss_pred HH---HHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEeec
Q 028083 173 VS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 173 v~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
++ +++++++++|+++...+ .+.++++|+|||||+|||++..
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 75 78899999999986432 2357899999999999998753
No 51
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.70 E-value=5.5e-16 Score=119.35 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=79.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCe--EEEEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
.+++||.|.|.|++++.+||+++|||++..... ....|+..++. .+.+... ..++++|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~~~~~~l~~~-----------~~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSDHHSIAIARG-----------PHPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCCcceEEEccC-----------CCCceEEEEEE
Confidence 489999999999999999999999999874422 13467776643 2333211 12467899999
Q ss_pred ECCHHHHH---HHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+|++++. ++|+++|+++...+ .+.+++||+||+||.|||++..
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 99877774 89999999986432 2256789999999999998753
No 52
>PRK06724 hypothetical protein; Provisional
Probab=99.70 E-value=4.2e-16 Score=117.84 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=75.9
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhc---CCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~L---Gf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
|+.+++||.|.|+|+++|++||+++| |++.... .. +..|+..+.+...... . ....+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~~-~~~g~~~l~l~~~~~~--~----~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------VA-YSTGESEIYFKEVDEE--I----VRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------Ee-eeCCCeeEEEecCCcc--c----cCCCCceeE
Confidence 45689999999999999999999966 5554321 01 1223333433322111 0 113467899
Q ss_pred EEEE---CCHHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEeec
Q 028083 167 CIAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 167 af~V---~dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
||.| +|+++++++|+++|+++..++ .|.+.+||+|||||.|||...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 589999999999999985332 2348899999999999998654
No 53
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=8.4e-16 Score=113.37 Aligned_cols=114 Identities=27% Similarity=0.539 Sum_probs=83.5
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC-eEEEEEecCCCCCCCC--CCCCCCcceEEEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 170 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~~~--~~~~g~g~~hiaf~V 170 (214)
+.||.|.|.|++++++||+++|||++... +. + ..+++..++ ..+.++.......... ......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~-~~-~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK-ED-R---RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec-CC-C---ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 35899999999999999999999998864 21 1 235677765 4455554432211000 111235678999999
Q ss_pred C--CHHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEee
Q 028083 171 R--DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 171 ~--dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+ |++++++++.++|+++.... .+++.+|++|||||+|||+++
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 5 89999999999999876543 467899999999999999863
No 54
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.69 E-value=1.1e-15 Score=111.02 Aligned_cols=105 Identities=30% Similarity=0.472 Sum_probs=80.5
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHHHH
Q 028083 98 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 177 (214)
Q Consensus 98 ~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~~~ 177 (214)
.|.|+|++++++||+++|||++....+ . ...+++..++..+++......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--E--PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--C--CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999886543 1 123567777777777655433211 2334569999999999999
Q ss_pred HHHHhCCCe-EEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 178 MILDKAGIS-YTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 178 ~~l~~~G~~-~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
+++++.|+. +..+. .+.+.++++||+||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 43322 34688999999999999986
No 55
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.69 E-value=6.3e-16 Score=114.36 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=79.9
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC--CeEEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
++++++|+.|.|+|++++.+||+++|||++....+ ..+|+... .....+..... ...+..|++
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~hi~ 65 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA---------PVAGLGHIA 65 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC---------CCCceeEEE
Confidence 35789999999999999999999999999876432 23455432 12222221111 123578999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEee----c-CCceEEEEEcCCCCeEEEEee
Q 028083 168 IAIR---DVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 168 f~V~---dv~~~~~~l~~~G~~~~~~----~-~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|.|. |+++++++++++|+++... . .+++.+|+.|||||+||++..
T Consensus 66 ~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 66 FRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred EECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 9995 8999999999999998643 1 235789999999999999864
No 56
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.1e-15 Score=113.85 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=76.3
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCC-----------CCceEEEEEE----CCeEEEEEecCCCCCCCCCC
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV----GAEMIHLMELPNPDPLSGRP 157 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~-----------~~~~~~~l~~----g~~~l~l~~~~~~~~~~~~~ 157 (214)
++.|++|.|.|+++|++||+++|||++..+...+. .....+++.. ++..+++.......+ .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 68999999999999999999999999865432222 1111233433 233566665332211 1
Q ss_pred CCCCcceEEEEEECCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEe
Q 028083 158 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 158 ~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
..|.+ |++|.|++. ++.++|+++|+++...+.+ .++++||||+.|||..
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 12333 677777777 5669999999999876554 7899999999999974
No 57
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.68 E-value=1.3e-15 Score=129.72 Aligned_cols=115 Identities=27% Similarity=0.451 Sum_probs=81.5
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+.+++++||+|.|.|++++.+||+++|||++..............|+..++.. +.+.... ..+++++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGV-HDIALTN--------GNGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCc-CceEeec--------CCCCceeeEEE
Confidence 45689999999999999999999999999987553222223234565543221 1111111 12367899999
Q ss_pred EECC---HHHHHHHHHhCCCe--EEee--cC---CceEEEEEcCCCCeEEEEee
Q 028083 169 AIRD---VSKLKMILDKAGIS--YTLS--KS---GRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 169 ~V~d---v~~~~~~l~~~G~~--~~~~--~~---g~~~~~~~DPdG~~iEl~~~ 212 (214)
+|+| +++++++|+++|++ +... .+ +.+++|++||+||+|||++.
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 9997 55678999999997 4432 22 25689999999999999864
No 58
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1.1e-15 Score=113.29 Aligned_cols=111 Identities=22% Similarity=0.299 Sum_probs=74.9
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCC--CCCC-CCCCCCcceEEEE--EE
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD--PLSG-RPEHGGRDRHTCI--AI 170 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~--~~~~-~~~~g~g~~hiaf--~V 170 (214)
||.|.|+|+++|++||+++|||++..... ..+.+..++..+.+....... .... ......+..|+++ .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 99999999999999999999999865321 112244444444443222111 1110 1112234567765 55
Q ss_pred CCHHHHHHHHHhCCCeEEeec--------CCceEEEEEcCCCCeEEEEee
Q 028083 171 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+|+++++++|+++|+++..++ .+.+.+||+|||||+|||.++
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 799999999999999986322 235889999999999999864
No 59
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.68 E-value=1.1e-15 Score=108.97 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=86.4
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHH
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 175 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~ 175 (214)
|+.|.|.|++++++||+++||+++...... ......++..++..+++....+.... ..+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998876432 12244556667778888876654321 345677899999999999
Q ss_pred HHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEE
Q 028083 176 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 209 (214)
Q Consensus 176 ~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl 209 (214)
+++++.++|+.+..+. .+...+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999886543 458999999999999986
No 60
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1e-15 Score=117.56 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=78.5
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC-eEEEEEecCCCCCCCCCCCCCCcceEEEEEECC-
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 172 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~-~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d- 172 (214)
.||.|.|+|++++.+||+++|||++..... ...+|++.++ ...+.+... + ...++++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-----~~~~~l~~~~~~~~h~~~~~-~-------~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-----DRIVFMRCHPNPFHHTFAVG-P-------ASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-----CEEEEEEcCCCCCcceeeec-c-------CCCCceEEEEEECCCH
Confidence 499999999999999999999999876532 1457777543 222322211 1 124689999999985
Q ss_pred --HHHHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEee
Q 028083 173 --VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 173 --v~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+++++++|+++|+++..++ .+.+.+||+||||+.|||+..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeC
Confidence 5678999999999986432 346889999999999999753
No 61
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.68 E-value=1.2e-15 Score=112.96 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=77.1
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC-CeEEEEEecCCCCCC-CCCCCCCCcceEEEEEEC
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIR 171 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~-~~~~~~g~g~~hiaf~V~ 171 (214)
++||.|.|.|+++|++||+. |||++...... ...+++..+ +..+.+......... ...+..+++..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 58999999999999999975 99998643221 122445554 555554332211100 011112344578999875
Q ss_pred ---CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 172 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 172 ---dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
|+++++++|+++|+++..++ .|.+.++|+|||||.|||+.
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEeC
Confidence 89999999999999876432 45688999999999999973
No 62
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=3.3e-15 Score=110.41 Aligned_cols=107 Identities=23% Similarity=0.400 Sum_probs=77.2
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC--
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 172 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d-- 172 (214)
-|+.|.|+|++++.+||+++||++.....+ + ...|. .++..+.+.....+... .++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKFL-LEDPRLNFVLNERPGAP------GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEEE-ecCCceEEEEecCCCCC------CCCeeEEEEEeCCHH
Confidence 499999999999999999999998865432 1 23333 23333333322222111 1467899999987
Q ss_pred -HHHHHHHHHhCCCeEEeecC------CceEEEEEcCCCCeEEEEeec
Q 028083 173 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 173 -v~~~~~~l~~~G~~~~~~~~------g~~~~~~~DPdG~~iEl~~~~ 213 (214)
++++++++.++|+++...+. +.+.+|++|||||+|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999865421 256799999999999999754
No 63
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.67 E-value=2e-15 Score=111.92 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=78.8
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHH
Q 028083 96 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 175 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~ 175 (214)
...|.|.|+++|++||++ |||++....+. ..+++..++..+++.......+ .....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-------ATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-------CCCcceEEEEeCCHHH
Confidence 357899999999999999 99999865432 2345677777778775432111 1122479999999999
Q ss_pred HHHHHHhCCCeEE--------ee---cCCceEEEEEcCCCCeEEEEee
Q 028083 176 LKMILDKAGISYT--------LS---KSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 176 ~~~~l~~~G~~~~--------~~---~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
++++|+++|+++. .. ..|.+.++|+|||||+|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 22 2567899999999999999884
No 64
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.67 E-value=4.8e-15 Score=126.08 Aligned_cols=113 Identities=15% Similarity=0.265 Sum_probs=81.1
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecC--CC-CCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARP--HD-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~--~~-~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
+.+++||+|.|+|++++.+||+++|||++..... .+ +.....+|+..++....+.....+ ..++++|+|
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 4799999999999999999999999999875421 11 111245677775433222211111 235789999
Q ss_pred EEECCHHH---HHHHHHhCCCeEEee-c---CCceEEEEEcCCCCeEEEEe
Q 028083 168 IAIRDVSK---LKMILDKAGISYTLS-K---SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 168 f~V~dv~~---~~~~l~~~G~~~~~~-~---~g~~~~~~~DPdG~~iEl~~ 211 (214)
|+|+|+++ ++++|+++|+....+ + .+..++|++||||++|||..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99997666 899999999943222 2 24678999999999999975
No 65
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=2.3e-15 Score=112.10 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=77.4
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC-CeEEEEEecCCCCCCCC--C-CCCCCcceEEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSG--R-PEHGGRDRHTCIA 169 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g-~~~l~l~~~~~~~~~~~--~-~~~g~g~~hiaf~ 169 (214)
+.+|.|.|.|+++|++||++ |||+.....+... ..++..+ +..+.+........... . ...+.+..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 36899999999999999987 9999864322111 2344444 45666654321100000 0 0123345699999
Q ss_pred EC---CHHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEe
Q 028083 170 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 170 V~---dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~ 211 (214)
|+ |+++++++++++|+++..++ .+.+.+||+|||||+|||+.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 68899999999999986443 34568899999999999985
No 66
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=5.6e-15 Score=106.77 Aligned_cols=100 Identities=27% Similarity=0.509 Sum_probs=72.1
Q ss_pred EEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCe----EEEEEecCCCCCCCCCCCCCCcceEEEEEECCHH
Q 028083 99 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 174 (214)
Q Consensus 99 l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~----~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~ 174 (214)
|.|+|++++++||+++|||++....+ ..+.+..+.. ...+....... ....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDPP------GPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESSS------SSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCccc------cCCCceeEEEEEEcCHH
Confidence 68999999999999999999998433 1233444321 22333332111 12346689999999999
Q ss_pred HHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEE
Q 028083 175 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 175 ~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~ 210 (214)
+++++++++|+++..+ ..|.+.++++|||||+|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997533 24679999999999999996
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=4.3e-15 Score=110.19 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=76.5
Q ss_pred EeEEEEEcCCHHHHHHHHHHh---cCCEEeeecCCCCCCceEEEEEEC--CeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~---LGf~~~~~~~~~~~~~~~~~l~~g--~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
++||.|.|+|+++|++||+++ |||++..... + ..+++..+ +..+.+.......+ ....+..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGEP-----ATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCCC-----CCCCCceEEEE
Confidence 589999999999999999998 6998875431 1 12333333 45666654332111 11233479999
Q ss_pred EECC---HHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEe
Q 028083 169 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 169 ~V~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~ 211 (214)
.|+| +++++++++++|+.+...+ .+.+.+||+|||||.|||+.
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 9996 7889999999999876432 13457999999999999973
No 68
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=3.3e-15 Score=110.09 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=76.1
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCHHHH
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 176 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv~~~ 176 (214)
..|.|.|+++|.+||++ |||++....+ ..+++..|+..+.+........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 35789999999999988 9999986532 3467888877666644322211 1235799999999999
Q ss_pred HHHHHhCCCeEE---------eecCCceEEEEEcCCCCeEEEEe
Q 028083 177 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 177 ~~~l~~~G~~~~---------~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
+++|+++|+++. ....|.+.++|+|||||+|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998742 11357899999999999999975
No 69
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=7.3e-15 Score=107.51 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=77.9
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC---
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 172 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d--- 172 (214)
+.|.|.|+++|++||+++||+++....+ ..+++.. ++..+.++........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEPA---SDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCCC---CCCCCCceEEEEEcCCHHH
Confidence 6789999999999999999999875422 1233444 5566777654432211 1123456899999985
Q ss_pred HHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEe
Q 028083 173 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~ 211 (214)
++++++++.++|+++..++ ..++.++|+|||||+|||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8899999999999987543 23578999999999999984
No 70
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.64 E-value=9.5e-15 Score=106.69 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=74.6
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC---CeEEEEEecCCCCCCCCCCCCCCcceEEEEEECCH
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 173 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g---~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~dv 173 (214)
..|.|.|++++.+||+++|||++.... + ...++..+ ...+.+...... +....|++|.|+|+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d~ 68 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH---G---WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDDV 68 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC---C---ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCCH
Confidence 468899999999999999999987431 1 23444442 234444332111 12346999999999
Q ss_pred HHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEee
Q 028083 174 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 174 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~ 212 (214)
++++++|+++|+++...+ .|.+.+|+.|||||+|||++.
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999976432 356789999999999999974
No 71
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=1.2e-14 Score=106.49 Aligned_cols=100 Identities=25% Similarity=0.377 Sum_probs=70.9
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCe--EEEEEecCCCCCCCCCCCCCCcceEE--E
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRHT--C 167 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~--~l~l~~~~~~~~~~~~~~~g~g~~hi--a 167 (214)
+|+||.|.|.|++++.+||+ .|||++....+ . .++.. ++. .+.+... . ..+..|+ +
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~-~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~ 62 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD------G-LELRTAGNDHRWARLLEG--A---------RKRLAYLSFG 62 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------c-eEEEecCCCceEEEeecC--C---------CCceeeEEEE
Confidence 68999999999999999998 69999875421 1 33333 322 2222211 1 1234454 4
Q ss_pred EEECCHHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEe
Q 028083 168 IAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 168 f~V~dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~ 211 (214)
+.++|+++++++++++|+++...+ .+...+||.|||||+|||+.
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEec
Confidence 455799999999999999986442 34567999999999999985
No 72
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.62 E-value=2.9e-15 Score=109.73 Aligned_cols=93 Identities=26% Similarity=0.397 Sum_probs=77.3
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC--eEEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~--~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
|||+|.|+|+++|++||+++||++.......+....+.+|+..++ ..++|+++..+++.. .++++|++||||+|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~--~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL--DRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH--HHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc--ccCCCCEEEEEEEeCC
Confidence 799999999999999999999999876555455666778888876 689999988765322 1278899999999999
Q ss_pred HHHHHHHHHhCCCeEEe
Q 028083 173 VSKLKMILDKAGISYTL 189 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~ 189 (214)
++++.++|+++|+++..
T Consensus 79 ~d~~~~~l~~~G~~~~~ 95 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLD 95 (109)
T ss_dssp HHHHHHHHHHTTECEEE
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 99999999999999753
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.60 E-value=1.8e-14 Score=122.59 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=80.3
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
|.+++||.|.|+|+++|++||+++|||+...... . ...|+..++....+.....+. .++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 4689999999999999999999999998764322 1 134667654323332222221 2467999999
Q ss_pred CC---HHHHHHHHHhCCCeEEeec-------CCceEEEEEcCCCCeEEEEe
Q 028083 171 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 171 ~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~iEl~~ 211 (214)
++ ++++.++|+++|+++...+ .+...++|+|||||.|||+.
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 97 8899999999999986532 23678999999999999986
No 74
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.59 E-value=3.1e-14 Score=121.26 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=80.9
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEEC-C-eEEEEEecCCCCCCCCCCCCCCcceEEE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTC 167 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g-~-~~l~l~~~~~~~~~~~~~~~g~g~~hia 167 (214)
+|.+++||.|.|+|++++++||+++|||++....+ ..+|+... . ....+..... ...++.|++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~---------~~~~~~hia 65 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA---------PSAALSYIG 65 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC---------CCcCccEEE
Confidence 36799999999999999999999999999876532 13455432 1 1112211111 123578999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEee
Q 028083 168 IAIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 168 f~V~---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|.|+ |+++++++|+++|+++.... .+.+.+||+|||||.|||++.
T Consensus 66 f~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 66 FRVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 9997 79999999999999987543 346899999999999999863
No 75
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=3.4e-14 Score=104.40 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=77.9
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCC--CCCCcceEEEEEE---C
Q 028083 97 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 171 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~--~~g~g~~hiaf~V---~ 171 (214)
|.|.|.|++++.+||+++|||++... +. ....++..++..+.+............+ ..+.+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-SN----DGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-CC----CceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 78999999999999999999998755 11 1345677777777776543211111111 1222334566665 5
Q ss_pred CHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEe
Q 028083 172 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~ 211 (214)
|++++++++++.|+++..++ .|++.++++||+||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999986432 35789999999999999974
No 76
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.59 E-value=2.9e-14 Score=122.06 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=80.0
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CC-eEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~-~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+++++||.|.|+|++++++||+++|||++....+. .+|+.. ++ ....+..... ...+++|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~---------~~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA---------DTAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC---------CCCceeEEEE
Confidence 47899999999999999999999999998765321 244443 21 1112211111 1246899999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEeec-----CCceEEEEEcCCCCeEEEEeec
Q 028083 169 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 169 ~V~---dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
.|+ |+++++++|+++|+++...+ ..+..+||+|||||.|||++..
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcc
Confidence 998 79999999999999986432 2367899999999999999743
No 77
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=5e-14 Score=107.53 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=92.4
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCC-C---CCCCCC-cceE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS-G---RPEHGG-RDRH 165 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~-~---~~~~g~-g~~h 165 (214)
+.+..|+.|.+++..+.++||...||++.....|.+..... +|.......+++..+.+..++. + .+++-+ |.+|
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgH 118 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGH 118 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccCceeeecCCCCCCCcchhhcCCCCCCCccce
Confidence 35778888888888888888888888887766554433322 6666666678888777666555 2 233444 8899
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEeec-CC--ceEEEEEcCCCCeEEEEee
Q 028083 166 TCIAIRDVSKLKMILDKAGISYTLSK-SG--RPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 166 iaf~V~dv~~~~~~l~~~G~~~~~~~-~g--~~~~~~~DPdG~~iEl~~~ 212 (214)
|||+|+|+++++++|+++|+++.... +| ...+|+.||||+.|||...
T Consensus 119 Ici~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 119 ICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred EEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 99999999999999999999986554 34 3679999999999999754
No 78
>PLN02300 lactoylglutathione lyase
Probab=99.55 E-value=1.3e-13 Score=117.62 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=86.6
Q ss_pred eeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC----eEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 91 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 91 i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~----~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
..++.|+.|.|+|++++.+||+++|||++......+...+..+++..++ ..+++....+. .....+++..|+
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i 227 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQI 227 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEE
Confidence 4578999999999999999999999999975432223334445554422 23444321111 112346788899
Q ss_pred EEEECCHHHHHHHHHhCCCeEEeec---CC--ceEEEEEcCCCCeEEEEeec
Q 028083 167 CIAIRDVSKLKMILDKAGISYTLSK---SG--RPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 167 af~V~dv~~~~~~l~~~G~~~~~~~---~g--~~~~~~~DPdG~~iEl~~~~ 213 (214)
+|.|+|+++++++++++|.++..++ .+ ++.++|+||||+.|+|++..
T Consensus 228 ~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 228 AIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 9999999999999999999987542 22 47889999999999999854
No 79
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.45 E-value=4.3e-13 Score=108.08 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=74.0
Q ss_pred eeEeEEEEEcC--CHHHHHHHHHHhcCCEEeeecCCCC--CCceEEEEEE--CCeEEEEEecCCC--CCCCCC---CCCC
Q 028083 92 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNP--DPLSGR---PEHG 160 (214)
Q Consensus 92 ~~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~~~~~~~--~~~~~~~l~~--g~~~l~l~~~~~~--~~~~~~---~~~g 160 (214)
+++|||++.|+ |++++++||+++|||+......... ......++.. |+.++.+.++..+ .+.... ...|
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 68999999999 9999999999999999886543222 2233344554 4578888876653 222111 2247
Q ss_pred CcceEEEEEECCHHHHHHHHHhCCCeEEee
Q 028083 161 GRDRHTCIAIRDVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~ 190 (214)
+|++||||.|+|+++++++|+++|+++...
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~ 111 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPI 111 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccC
Confidence 899999999999999999999999998543
No 80
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.38 E-value=8.2e-12 Score=103.43 Aligned_cols=111 Identities=25% Similarity=0.397 Sum_probs=85.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCe-EEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~-~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
+.++.|.|.|+|++++..||+++||+++..+.. ..+-+..|+. -+.|.+.++...+ +.+..|+-|+||-+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~~---~~~~aGLyH~AfLl 79 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARRP---PPRAAGLYHTAFLL 79 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCCC---Cccccceeeeeeec
Confidence 679999999999999999999999999997654 2244677776 3444443333221 22456889999999
Q ss_pred C---CHHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEe
Q 028083 171 R---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 171 ~---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~ 211 (214)
+ |+.+++.++...|+++.... .-...+||.||+||-||++-
T Consensus 80 P~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYa 125 (265)
T COG2514 80 PTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYA 125 (265)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEe
Confidence 9 68888999999999987332 23789999999999999985
No 81
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.34 E-value=8.7e-12 Score=110.21 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=92.9
Q ss_pred ceeeeceeeeeeceeeecCccCccc---hhhhccCCCCccccCCcceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeec
Q 028083 47 QFLTTKAKMSVEGGILKKEPIRDSD---KIETATNGKHNIKEIRDYGVVSVHHVGILCENLERSLEFYQNILGLEINEAR 123 (214)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~ 123 (214)
....+.++..+.++++.+......+ ..+.. .. ......+..+.+||||++.|+|++.++.||+++|||+..+..
T Consensus 134 ~~~~I~~~G~~~h~lVdr~~~~~~~f~p~f~~~-~~--~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~ 210 (398)
T PLN02875 134 VIAEVELYGDVVLRYVSYKGFDGAKFLPGYEPV-ES--SSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEF 210 (398)
T ss_pred EEEEEEccCCcEEEEEccCCCCCCccCCCcccc-cc--cccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeee
Confidence 3444566677777777664321111 11100 00 000112334689999999999999999999999999887543
Q ss_pred CCCC-----CCceEEEEEEC--CeEEEEEecCC---CCCCCCC---CCCCCcceEEEEEECCHHHHHHHHHhC----CCe
Q 028083 124 PHDK-----LPYRGAWLWVG--AEMIHLMELPN---PDPLSGR---PEHGGRDRHTCIAIRDVSKLKMILDKA----GIS 186 (214)
Q Consensus 124 ~~~~-----~~~~~~~l~~g--~~~l~l~~~~~---~~~~~~~---~~~g~g~~hiaf~V~dv~~~~~~l~~~----G~~ 186 (214)
.... ...+...+..+ ..++.|+++.. .+++++. ...|+|++||||.|+||.+++++|+++ |++
T Consensus 211 d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~ 290 (398)
T PLN02875 211 TAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFE 290 (398)
T ss_pred ccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCee
Confidence 2211 12344556653 47899999863 3455542 445799999999999999999999999 999
Q ss_pred EEe
Q 028083 187 YTL 189 (214)
Q Consensus 187 ~~~ 189 (214)
+..
T Consensus 291 fL~ 293 (398)
T PLN02875 291 FMP 293 (398)
T ss_pred cCC
Confidence 854
No 82
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.27 E-value=1.7e-11 Score=107.50 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=75.6
Q ss_pred CcceeeeEeEEEEEcC--CHHHHHHHHHHhcCCEEeeecCC-CC-CCceEEEEE--ECCeEEEEEecCCC--CCCCC---
Q 028083 87 RDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPH-DK-LPYRGAWLW--VGAEMIHLMELPNP--DPLSG--- 155 (214)
Q Consensus 87 ~~~~i~~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~~~~~-~~-~~~~~~~l~--~g~~~l~l~~~~~~--~~~~~--- 155 (214)
..+.+.++|||++.|. |+++++.||+++|||++...... .. ......++. .|+.+++++++... .+...
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 4567899999999998 99999999999999998754321 11 111112233 25678898876432 22222
Q ss_pred CCCCCCcceEEEEEECCHHHHHHHHHhCCCeEEee
Q 028083 156 RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 156 ~~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~ 190 (214)
....|+|++||||.|+|+++++++|+++|+++...
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~ 266 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDT 266 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcC
Confidence 12247899999999999999999999999997643
No 83
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.26 E-value=1.3e-10 Score=101.93 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=75.8
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCC--CCCCCcceEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIA 169 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~--~~~g~g~~hiaf~ 169 (214)
.+++||.|+|+|++++++||.+.|||++.......... ....++.|+..+.+..+..+.++... ..+|++++|+||.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~ 79 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFR 79 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEE
Confidence 36899999999999999999999999998652111111 22336778889999887665443322 4588999999999
Q ss_pred ECCHHHHHHHHHhCCCeEEe
Q 028083 170 IRDVSKLKMILDKAGISYTL 189 (214)
Q Consensus 170 V~dv~~~~~~l~~~G~~~~~ 189 (214)
|+|++++++++.++|+++..
T Consensus 80 V~Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 80 VDDAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred ECCHHHHHHHHHHCCCEecc
Confidence 99999999999999998753
No 84
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.25 E-value=8.5e-11 Score=86.56 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=81.5
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCC---CCCCCcceEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR---PEHGGRDRHTCI 168 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~---~~~g~g~~hiaf 168 (214)
..+..|+|.|.|++++.+||.. |||+.......+. ...++..+.+.+.|++.......... ....++-.-+|+
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~l 77 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISL 77 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEe
Confidence 3567899999999999999998 9999985432111 22334445555555443322222111 113344567899
Q ss_pred EEC---CHHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEeecC
Q 028083 169 AIR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 214 (214)
Q Consensus 169 ~V~---dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~~~~ 214 (214)
.+. ++++.++++.+.|.+...+. ...+...|.|||||.||+...++
T Consensus 78 s~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 78 SAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred ccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 987 79999999999999875332 33778889999999999987653
No 85
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.22 E-value=4.9e-10 Score=83.99 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=78.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECC-eEE-EEEecCCCCCCCCCCCCCCcceEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMI-HLMELPNPDPLSGRPEHGGRDRHTCIA 169 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~-~~l-~l~~~~~~~~~~~~~~~g~g~~hiaf~ 169 (214)
..+.|..|++.|++++.+||+++||++......-... ....+..++ ..- .+...... + .++.--.+-|.
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~~gG~l~~~~~~------~-p~~~~~~iy~~ 78 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEM--RYAVFPADGAGAGGGLMARPGS------P-PGGGGWVIYFA 78 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCCCc--eEEEEECCCccccceeccCCcC------C-CCCCCEEEEEe
Confidence 4688999999999999999999999999865221111 222222222 000 11111100 0 11233578899
Q ss_pred ECCHHHHHHHHHhCCCeEEeec----CCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+|+++..++..+.|-++..++ .+++.+.+.||+||+|-|.++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999987553 4689999999999999999864
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.20 E-value=1.1e-09 Score=82.36 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=74.8
Q ss_pred EEEc-CCHHHHHHHHHHhcCCEEeeecCCC----------CCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 98 GILC-ENLERSLEFYQNILGLEINEARPHD----------KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 98 ~l~V-~D~~~a~~FY~~~LGf~~~~~~~~~----------~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
.|.+ +|.++|++||+++||+++....+.. ......+-+..++..+.+......... .++...++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEEE
Confidence 4566 9999999999999999998653211 122234557888877777654332211 12234579
Q ss_pred EEEECC---HHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEE
Q 028083 167 CIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 167 af~V~d---v~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~ 210 (214)
++.|+| +++++++|.+.| ++..+ ..|.+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 999985 778899998877 55432 35678999999999999973
No 87
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.18 E-value=7.2e-11 Score=86.28 Aligned_cols=120 Identities=23% Similarity=0.337 Sum_probs=74.3
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCc---eEEEEEECCeEEEEEecCC----C-CCCCC---CCCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY---RGAWLWVGAEMIHLMELPN----P-DPLSG---RPEHG 160 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~---~~~~l~~g~~~l~l~~~~~----~-~~~~~---~~~~g 160 (214)
++++||+|.|+|+++|.+||+++|||+............ ...+...+........... . ..... .....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999987654332221 1111111110011111100 0 00000 01111
Q ss_pred --CcceEEEEEECC---HHHHHHHHHhCCCeEEeec--CCceEEEEEcCCCCeEEEEe
Q 028083 161 --GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 161 --~g~~hiaf~V~d---v~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~iEl~~ 211 (214)
.+..|+++.+++ ..+....+...|..+.... ..+..+|++||||+.||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 246799999998 7777788888888875432 22338999999999999975
No 88
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.09 E-value=2.5e-09 Score=77.77 Aligned_cols=112 Identities=25% Similarity=0.433 Sum_probs=74.5
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEE--EEECCeEEEEEecCCCCCCCCC--CCCCCcceEE--
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW--LWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHT-- 166 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~--l~~g~~~l~l~~~~~~~~~~~~--~~~g~g~~hi-- 166 (214)
.+-|+.|.|.|++++++||.++||++...+.. .| +..-+.++..-..+.+++...- ..++--..|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 46799999999999999999999998764432 23 2332333333222223222111 1222233465
Q ss_pred EEEECCHHHHHHHHHhCCCeEEeec--------CCceEEEEEcCCCCeEEEEee
Q 028083 167 CIAIRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 167 af~V~dv~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~iEl~~~ 212 (214)
.|.++|..++.++|.++|+++..++ ...+.+++.||.||.+|+...
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 4556699999999999999864332 237889999999999999754
No 89
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.04 E-value=6.1e-10 Score=93.92 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=83.0
Q ss_pred cceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEe-eecCCCCCCceEEE-EEECCeEEEEEecCCCCCCC-C--CCCCCCc
Q 028083 88 DYGVVSVHHVGILCENLERSLEFYQNILGLEIN-EARPHDKLPYRGAW-LWVGAEMIHLMELPNPDPLS-G--RPEHGGR 162 (214)
Q Consensus 88 ~~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~-~~~~~~~~~~~~~~-l~~g~~~l~l~~~~~~~~~~-~--~~~~g~g 162 (214)
...+.+++||.|.|+|..+++.||+..|||++. ++..+.+.+.+..+ ++.|...+.+...-++.... + ..+||++
T Consensus 12 ~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 12 AGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred ccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccc
Confidence 445789999999999999999999999999998 55455555444433 77788888888776664422 2 3779999
Q ss_pred ceEEEEEECCHHHHHHHHHhCCCeEEee
Q 028083 163 DRHTCIAIRDVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~~G~~~~~~ 190 (214)
+..+||+|+|.+++.+.+.++|+.+..+
T Consensus 92 vkdvafeVeD~da~~~~~va~Ga~v~~~ 119 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEAVANGAKVVRP 119 (381)
T ss_pred hhceEEEecchHHHHHHHHHcCCcccCC
Confidence 9999999999999999999999998644
No 90
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.02 E-value=2.4e-08 Score=75.96 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=80.5
Q ss_pred EEcC-CHHHHHHHHHHhcCCEEeeecCCCC----------CCceEEEEEECCeEEEEEecCCCCCCCCCCCCCC-cceEE
Q 028083 99 ILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGG-RDRHT 166 (214)
Q Consensus 99 l~V~-D~~~a~~FY~~~LGf~~~~~~~~~~----------~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~-g~~hi 166 (214)
|... |.++|++||+++||.+.....+... ...-++-|..++..+.+........ ...++ .-.-|
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~----~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG----ATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC----cccCCCeeEEE
Confidence 5566 9999999999999999886644333 3344555888887666654332221 11222 23467
Q ss_pred EEEECCHHHHHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEeec
Q 028083 167 CIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 167 af~V~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
-+.+.|++++++++.+.|++++.+ ..|.+...++||.|+.|-|.+..
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 778889999999999999887654 36788999999999999997653
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.95 E-value=1.5e-08 Score=89.87 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEee-ecCCCCCCceEEE-EEECCeEEEEEecCCCC-------------------C
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINE-ARPHDKLPYRGAW-LWVGAEMIHLMELPNPD-------------------P 152 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~-~~~~~~~~~~~~~-l~~g~~~l~l~~~~~~~-------------------~ 152 (214)
+|||.|+|+|+++++.||...|||+..- ..++++.+....+ ++.|+..+.+..+..+. +
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 5899999999999999999999999884 4444555545444 67789888888875441 0
Q ss_pred CCC--CCCCCCcceEEEEEECCHHHHHHHHHhCCCeEEe
Q 028083 153 LSG--RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 189 (214)
Q Consensus 153 ~~~--~~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~ 189 (214)
+.. ...||+++..+||+|+|++++++++.+.|.+...
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~ 119 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVL 119 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeecc
Confidence 011 1458999999999999999999999999998643
No 92
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.86 E-value=1.1e-08 Score=78.01 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=77.6
Q ss_pred CcceeeeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCC--CCCCCCcce
Q 028083 87 RDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDR 164 (214)
Q Consensus 87 ~~~~i~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~--~~~~g~g~~ 164 (214)
.|+.+.+++||.+.++|.+++..|++. |||+...+... + ....++.|++++.+... +++... ...||+++.
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hrs---k-~v~l~rQG~I~~vln~e--p~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFTA-LGFQPVARHRS---K-DVTLYRQGDINFVLNSE--PDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHCC-CCEEEECCECC---C-SEEEEEETTEEEEEEEE--STSCHHHHHHHHSSEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHHH-hCcceEEecCC---c-ceEEEEeCCEEEEEeCC--CcchHHHHHHhcCCEEE
Confidence 377889999999999998888888865 99999854321 1 12335779998888764 333222 145899999
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEeec---CCceEEEEEcCCCCeEEEEe
Q 028083 165 HTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~iEl~~ 211 (214)
-++|+|+|..++++++.+.|.+....+ .....--++-++|-++-|++
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVd 125 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVD 125 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEe
Confidence 999999999999999999999865432 11233344555555555544
No 93
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.79 E-value=3.3e-09 Score=90.90 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=80.8
Q ss_pred cceeeeEeEEEEEc--CCHHHHHHHHHHhcCCEEeeec----CCCCCCceEEEEEECCeEEEEEecCCCCCCCCC---CC
Q 028083 88 DYGVVSVHHVGILC--ENLERSLEFYQNILGLEINEAR----PHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR---PE 158 (214)
Q Consensus 88 ~~~i~~i~HV~l~V--~D~~~a~~FY~~~LGf~~~~~~----~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~---~~ 158 (214)
...+..|||+...| .+++.++.||+++|||+..... +....+.+.+--.+|..++.|....+..+.++. ..
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHh
Confidence 44457999999976 8999999999999999887432 323333344334457789999888877775553 45
Q ss_pred CCCcceEEEEEECCHHHHHHHHHhCCCeEEee
Q 028083 159 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 159 ~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~ 190 (214)
+|.|++||||.++||-+++++|+++|+++.+.
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~i 273 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPI 273 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCC
Confidence 89999999999999999999999999997543
No 94
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=3.4e-08 Score=80.56 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=78.8
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCC-------CCc----eEEEEEECCe--EEEEEecCCCCCCCCCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-------LPY----RGAWLWVGAE--MIHLMELPNPDPLSGRPE 158 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~-------~~~----~~~~l~~g~~--~l~l~~~~~~~~~~~~~~ 158 (214)
.++=|+++.|.|..++++||+++|||++.....-+. +++ ...++..|.. ++.+-. .-+-......
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViEL--TYNYgV~~Ye 93 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIEL--TYNYGVSKYE 93 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEE--EeccCcccee
Confidence 678899999999999999999999999984322111 222 2345666643 332211 1111122344
Q ss_pred CCCcceEEEEEECCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEee
Q 028083 159 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 159 ~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
-|.+..||.+.++|+-...+++...|-+ ..|.-.+++.||||+.+++.+.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~~----~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGGK----GSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCCc----ccceEEEEEECCCCcEEEEecc
Confidence 6778889999999999988888776641 2334457789999999999853
No 95
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.76 E-value=2.5e-08 Score=79.03 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=57.3
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCC--CC------CCCCCcceE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GR------PEHGGRDRH 165 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~--~~------~~~g~g~~h 165 (214)
|||+++.|+|++++.++|.+.|||.+.........+.....+..++..++++......... .. ...+.|..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 7999999999999999997789999997766555455555566676699999864332211 11 014789999
Q ss_pred EEEEECCHHHHHHHHHhCCCe
Q 028083 166 TCIAIRDVSKLKMILDKAGIS 186 (214)
Q Consensus 166 iaf~V~dv~~~~~~l~~~G~~ 186 (214)
+|+.++|+++..+++++.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 96
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.72 E-value=9.4e-08 Score=82.58 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=70.8
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 171 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~ 171 (214)
-..-||+|.|.|+++|.+||..+||+.. +... . .+-+ ++..+.+..... +. +...-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~----a~cm--~dtI~vMllt~~-D~------~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--K----LFLL--GKTSLYLQQTKA-EK------KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--c----cccc--cCcEEEEEecCC-CC------CCcceEEEEeccC
Confidence 3578999999999999999999877764 3211 1 1112 444334333322 11 1123345899988
Q ss_pred ---CHHHHHHHHHhCCCeEEeec-CCceEEEEEcCCCCeEEEEee
Q 028083 172 ---DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 172 ---dv~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+++++++++.++|.....++ +.+..--|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFPLRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccCcceeECCCCCEEEEEEE
Confidence 69999999999998654332 223377799999999999864
No 97
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.58 E-value=4.3e-07 Score=75.57 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=68.4
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCC-CCCCCCcceEEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG-RPEHGGRDRHTCIAI 170 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~-~~~~g~g~~hiaf~V 170 (214)
+.|.||.|.|.|++++..||++.|||+...+.+ ...|+..|+.+.|+........... .+....|+..+.+.+
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~ 240 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHT 240 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEc
Confidence 679999999999999999999999999997633 3578999998777755443322221 223456777788888
Q ss_pred CCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEE
Q 028083 171 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 210 (214)
++-......... ..||.|+.|.++
T Consensus 241 ~~~~~l~~~~~~----------------~~Dp~G~~i~~~ 264 (265)
T COG2514 241 PDPEKLDATGTR----------------LTDPWGIVIRVV 264 (265)
T ss_pred CCcccccccccc----------------eecCCCceEEEe
Confidence 764332111111 189999999875
No 98
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.2e-06 Score=71.60 Aligned_cols=109 Identities=21% Similarity=0.314 Sum_probs=73.3
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCe--EEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~--~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
.+-.|.|.|+|+++|.+||.++|||++.+... ....+.|..|+. .++|...-..-. +..+...++|.+
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee----k~t~~~mgYgd~q~~LElt~~~~~id------~~kg~griafai 218 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE----KYTRARMGYGDEQCVLELTYNYDVID------RAKGFGRIAFAI 218 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhh----hhhhhhhccCCcceEEEEEeccCccc------ccccceeEEEec
Confidence 36789999999999999999999999986422 112234555543 455554333211 223444577776
Q ss_pred C--CHHHHHHHHHhCCCeEEe------ec--CCceEEEEEcCCCCeEEEEe
Q 028083 171 R--DVSKLKMILDKAGISYTL------SK--SGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 171 ~--dv~~~~~~l~~~G~~~~~------~~--~g~~~~~~~DPdG~~iEl~~ 211 (214)
+ ++..+-+.++..+-++.. .+ .+...+-+.|||||.|.|+.
T Consensus 219 p~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 219 PTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred cccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 6 788888888887655421 11 23667888999999999874
No 99
>PRK10148 hypothetical protein; Provisional
Probab=98.19 E-value=0.00019 Score=55.37 Aligned_cols=108 Identities=15% Similarity=0.053 Sum_probs=69.3
Q ss_pred EEEc-CCHHHHHHHHHHhcCCEEeeec-----CC---------------CCCCceEEEEEECCeEEEEEecCCCCCCCCC
Q 028083 98 GILC-ENLERSLEFYQNILGLEINEAR-----PH---------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGR 156 (214)
Q Consensus 98 ~l~V-~D~~~a~~FY~~~LGf~~~~~~-----~~---------------~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~ 156 (214)
-|.. +|.++|++||+++||.++.... +. .....-++-|.+++..+.+...... .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~-~---- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPS-G---- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCC-c----
Confidence 3444 5999999999999999886331 10 0122234558888876655432211 1
Q ss_pred CCCCCcceEEEEEECCHHH---HHHHHHhCCCeEEee----cCCceEEEEEcCCCCeEEEEee
Q 028083 157 PEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 157 ~~~g~g~~hiaf~V~dv~~---~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
+..+. -.++++.++|+++ ++++| +.|.++..+ ..+.+...++||.|+.|.|...
T Consensus 81 ~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 KAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 11122 3578888888776 56666 466666543 3567788999999999999753
No 100
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.18 E-value=9e-05 Score=54.63 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=62.1
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE--CCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV--GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 172 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~--g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d 172 (214)
.+-+|.|.|-+...+||+++|||++..+.- ..+++.. +..++.+-+.++.... .-+....+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr--~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTR--AVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccc--cccCcceeeEEEEEcCC
Confidence 356889999999999999999999985432 1234433 3456777666554321 11122356789999997
Q ss_pred HHHHHHHHHhCCCeEEee--cCCceEEEEEcCCCCeEEEEeec
Q 028083 173 VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
..+. +.|.++|..+... ...++.|-..+|+|.+|.+...+
T Consensus 74 ~~EI-e~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEI-EALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHH-HHHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHH-HHHHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 6654 4444555554322 24477888889999999997544
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=3e-05 Score=66.93 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=78.8
Q ss_pred cceeeeEeEEEEEcCCH-HHHHHHHHHhcCCEEeeecCCCCCCceEEE-EEECCeEEEEEecCCCCCCCC--CCCCCCcc
Q 028083 88 DYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAW-LWVGAEMIHLMELPNPDPLSG--RPEHGGRD 163 (214)
Q Consensus 88 ~~~i~~i~HV~l~V~D~-~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~-l~~g~~~l~l~~~~~~~~~~~--~~~~g~g~ 163 (214)
|+...|+++|.|+|+|+ ++...++.. |||+..-..... .+. ++.|++.+.+...+. +... ...||++.
T Consensus 17 P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrsk-----~v~l~rQGdinlvvn~~~~--s~a~~f~~~Hgps~ 88 (363)
T COG3185 17 PEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRSK-----AVTLYRQGDINLVVNAEPD--SFAAEFLDKHGPSA 88 (363)
T ss_pred CCCCCceeEEEEecCCHHHHHHHHHHH-hCcccccccccc-----ceeEEEeCCEEEEEcCCCc--chhhHHHHhcCCch
Confidence 55578999999999999 555555555 999987542211 233 456887766655433 2222 25699999
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEEeec-------------CCceEEEEEcCCC
Q 028083 164 RHTCIAIRDVSKLKMILDKAGISYTLSK-------------SGRPAIFTRDPDA 204 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~~G~~~~~~~-------------~g~~~~~~~DPdG 204 (214)
.-++|.|+|...+++++.+.|.+..... .|+..+||.|.+|
T Consensus 89 ~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 89 CAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred heeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 9999999999999999999999643211 3577899999884
No 102
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=98.02 E-value=9.4e-07 Score=67.41 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=64.6
Q ss_pred CcccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeeceeeecCccCccchhhhccCCCCccccCCc
Q 028083 9 TAIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIETATNGKHNIKEIRD 88 (214)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (214)
+.+|+|+|||+|++|++++.|..++++ .++.||+.| ..+++...+++++.+++. .
T Consensus 56 v~aA~~~dv~vIgvSsl~g~h~~l~~~--lve~lre~G----~~~i~v~~GGvip~~d~~-------------------~ 110 (143)
T COG2185 56 VRAAVEEDVDVIGVSSLDGGHLTLVPG--LVEALREAG----VEDILVVVGGVIPPGDYQ-------------------E 110 (143)
T ss_pred HHHHHhcCCCEEEEEeccchHHHHHHH--HHHHHHHhC----CcceEEeecCccCchhHH-------------------H
Confidence 457899999999999999999999999 999999999 888887888888765432 0
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcC
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILG 116 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LG 116 (214)
+.-+|++-|.-.-.++.+++.+-.+.++
T Consensus 111 l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 111 LKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 1114556666666777887777766554
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.74 E-value=2e-05 Score=67.07 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=71.2
Q ss_pred CcceeeeEeEEEEEcC--CHHHHHHHHHHhcCCEEeeecCCCCCCc-----eEEEEEEC--CeEEEEEecCCCCCC---C
Q 028083 87 RDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPY-----RGAWLWVG--AEMIHLMELPNPDPL---S 154 (214)
Q Consensus 87 ~~~~i~~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~~~~~~~~~~-----~~~~l~~g--~~~l~l~~~~~~~~~---~ 154 (214)
+.+.+.++||++..++ ..+.+..||.+.|||.--+..+.+..+. +...+... .+.+.+.++...... +
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQI 251 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQI 251 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHH
Confidence 3466789999999998 7889999999999998766554333211 11112222 234555554433211 1
Q ss_pred CC---CCCCCcceEEEEEECCHHHHHHHHHhCCCeEEe
Q 028083 155 GR---PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 189 (214)
Q Consensus 155 ~~---~~~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~ 189 (214)
+. ...|.|++||++-++||-++++.++++|.++..
T Consensus 252 qeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs 289 (381)
T KOG0638|consen 252 QEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLS 289 (381)
T ss_pred HHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCcccc
Confidence 11 335789999999999999999999999999853
No 104
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.13 E-value=0.031 Score=41.28 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHhcCCE-Eee--ecCCC----CCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEECC-
Q 028083 101 CENLERSLEFYQNILGLE-INE--ARPHD----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 172 (214)
Q Consensus 101 V~D~~~a~~FY~~~LGf~-~~~--~~~~~----~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~d- 172 (214)
-+|.++|.+||+++||-. +.. ..+.. ....-.+.+..++..+...... +.. ..+++ ..+++.++|
T Consensus 10 ~g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~-~~~-----~~~~~-~sl~i~~~~~ 82 (116)
T PF06983_consen 10 NGNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGG-PDF-----PFGNN-ISLCIECDDE 82 (116)
T ss_dssp SS-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEES-TS---------TT-EEEEEEESSH
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCC-CCC-----CCCCc-EEEEEEcCCH
Confidence 489999999999999953 322 12211 1222345578888777665544 111 12233 568888885
Q ss_pred --HHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEE
Q 028083 173 --VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 173 --v~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 210 (214)
+++++++|.+.|- .....-.++|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC------ccceeEEEEeCCCCEEEeC
Confidence 5667889988876 3237788999999999875
No 105
>PF15067 FAM124: FAM124 family
Probab=96.19 E-value=0.055 Score=44.55 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=57.7
Q ss_pred eEeEEEEEcC--CHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEE
Q 028083 93 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 170 (214)
Q Consensus 93 ~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V 170 (214)
.+--+.|+|. |.+.+++||+-+|+-+.....+ + -+.|.-.....+.+.-....-++...+.... -.-+.|.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~---FC~F~lys~~~~~iQlsLK~lp~~~~p~p~e-savLqF~V 201 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D---FCFFTLYSQPGLDIQLSLKQLPPGMSPEPTE-SAVLQFRV 201 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C---cEEEEEecCCCeEEEEEeccCCCCCCccccc-ceEEEEEe
Confidence 3455778887 9999999999999988875433 2 2333222222223221111111111111111 24589999
Q ss_pred CCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEE
Q 028083 171 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 209 (214)
Q Consensus 171 ~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl 209 (214)
.|+.+++-.|=.-=.++.+ + .--..|||||.|=|
T Consensus 202 ~~igqLvpLLPnpc~PIS~----~-rWqT~D~DGNkILL 235 (236)
T PF15067_consen 202 EDIGQLVPLLPNPCSPISE----T-RWQTEDYDGNKILL 235 (236)
T ss_pred cchhhhcccCCCCcccccC----C-cceeeCCCCCEecc
Confidence 9999985444221111111 1 24478999999843
No 106
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.98 E-value=0.0015 Score=49.70 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=57.2
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeece--eeecCccCccchhhhccCCCCccccCC
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGG--ILKKEPIRDSDKIETATNGKHNIKEIR 87 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (214)
.+|++||+|.||+|++.|.|...+.+ +++.+++.|. .....+.++ +++.++... . ..
T Consensus 46 ~aa~~~~adiVglS~l~~~~~~~~~~--~~~~l~~~gl----~~~~vivGG~~vi~~~d~~~---~------------~~ 104 (134)
T TIGR01501 46 KAAIETKADAILVSSLYGHGEIDCKG--LRQKCDEAGL----EGILLYVGGNLVVGKQDFPD---V------------EK 104 (134)
T ss_pred HHHHHcCCCEEEEecccccCHHHHHH--HHHHHHHCCC----CCCEEEecCCcCcChhhhHH---H------------HH
Confidence 57899999999999999999999888 8999999983 333332333 333322110 0 00
Q ss_pred cceeeeEeEEEEEcCCHHHHHHHHHHhcC
Q 028083 88 DYGVVSVHHVGILCENLERSLEFYQNILG 116 (214)
Q Consensus 88 ~~~i~~i~HV~l~V~D~~~a~~FY~~~LG 116 (214)
.+.-.|++.+.=.-..+++.++|.++.|.
T Consensus 105 ~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 105 RFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 11124666666667788888888877653
No 107
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.81 E-value=0.047 Score=39.29 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=39.2
Q ss_pred eEEEEEECCHHHHHHHHHh-CCCeEEee----cCCceEEEEEcCCC-CeEEEEeec
Q 028083 164 RHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDA-NALEFTQVD 213 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DPdG-~~iEl~~~~ 213 (214)
+|+++.|+|++++.+.+.+ .|+..... ..+....++..++| ..|||.++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 89876432 23456677888888 689999864
No 108
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.49 E-value=0.0024 Score=48.42 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=57.3
Q ss_pred CcccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeeceeeecCccCccchhhhccCCCCccccCCc
Q 028083 9 TAIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIETATNGKHNIKEIRD 88 (214)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (214)
..+++++++|+|++|++.+.|...+++ +++.+++.+. .....+.++.++++... .
T Consensus 46 v~aa~e~~adii~iSsl~~~~~~~~~~--~~~~L~~~g~----~~i~vivGG~~~~~~~~-------------------~ 100 (132)
T TIGR00640 46 ARQAVEADVHVVGVSSLAGGHLTLVPA--LRKELDKLGR----PDILVVVGGVIPPQDFD-------------------E 100 (132)
T ss_pred HHHHHHcCCCEEEEcCchhhhHHHHHH--HHHHHHhcCC----CCCEEEEeCCCChHhHH-------------------H
Confidence 367899999999999999999999998 8999999883 23334444434432211 1
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhc
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNIL 115 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~L 115 (214)
+.=.|++.+--.-.|+...++++.+.+
T Consensus 101 l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 101 LKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 111466666666678888888887643
No 109
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.34 E-value=0.13 Score=37.00 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=44.0
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcceEEEEEEC-
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 171 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf~V~- 171 (214)
.+.-|.|.|+| +++.+||+++||-++ ...+.+.+..+++-... +...=++..+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~-------------------~~~l~f~ea~G~DL~~~-~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL-------------------PFFLTFQEAQGPDLTIE-NNETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH-------------------TTTEEEEE---CCGSS--TTSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC-------------------CceEEEeeccCCccccC-CCcEEeeEEEEEEecC
Confidence 46678999999 889999999886211 12245555444432221 112234567889998
Q ss_pred --CHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeE
Q 028083 172 --DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 207 (214)
Q Consensus 172 --dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~i 207 (214)
|+.++.+++.+.++=+ .....++.+.||.|..|
T Consensus 64 ~~Dl~~L~~~le~~~~fi---dKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFFI---DKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp S--HHHHHHHTTTS-EE-----TT-SEEEEE-TTS-EE
T ss_pred cccHHHHHHHhcccceEe---cCCceEEEEECCcceEE
Confidence 7888889998844422 23356788999998654
No 110
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=94.32 E-value=0.0097 Score=44.85 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=32.8
Q ss_pred cccccccccEEeeeeccccccccccccceeecccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNG 46 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (214)
.+|++||+|.||+|+|.|.|...+.+ ++..+|+.+
T Consensus 44 ~aa~~~~adiVglS~L~t~~~~~~~~--~~~~l~~~g 78 (128)
T cd02072 44 DAAIETDADAILVSSLYGHGEIDCKG--LREKCDEAG 78 (128)
T ss_pred HHHHHcCCCEEEEeccccCCHHHHHH--HHHHHHHCC
Confidence 57899999999999999999999998 899999998
No 111
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=92.93 E-value=0.42 Score=35.51 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=37.4
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~ 146 (214)
.++.|++|.|.|++++.+..++ .|.++...........+.+|++- ++..+++++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4789999999999999999998 89988753221222334444443 455666665
No 112
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.44 E-value=1 Score=31.98 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=36.1
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeec---C-CceEEEEEcCCCCeEEEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S-GRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~---~-g~~~~~~~DPdG~~iEl~~ 211 (214)
+++|+++.|+|++++.+.+++ .|+.+.... . ....+.+..+++..+|+.+
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 578999999999999999974 899875432 1 1223444556777888765
No 113
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.24 E-value=0.77 Score=35.43 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=35.4
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEc-CCCCeEEEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 212 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~D-PdG~~iEl~~~ 212 (214)
|++|+++.|+|++++.+.+.+ .|.++.....+...++..+ .+|+.|+|.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 578999999999999999975 5988764433322222222 35788888764
No 114
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=92.22 E-value=0.55 Score=36.56 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=32.5
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW 136 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~ 136 (214)
.+++||+|.|+|+.++.+-+++ +|.+.....+ ++..-..+|+.
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~-dGk~K~iaF~~ 156 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLK-DGKMKPIAFLH 156 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCC-CccccceeEEE
Confidence 7999999999999999999999 9999665433 33222445544
No 115
>PLN02367 lactoylglutathione lyase
Probab=91.35 E-value=1.2 Score=37.10 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=41.2
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 149 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~ 149 (214)
.+++||+|.|.|++++.+..++ .|.++... |..+...+.+|++- +|..++|++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~-P~~g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKK-PNDGKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeC-CccCCceEEEEEECCCCCEEEEEeccc
Confidence 5899999999999999999998 99998843 33332234456543 567888887543
No 116
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.29 E-value=1.1 Score=32.51 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=34.4
Q ss_pred cceEEEEEECCHHHHHHHHHhC----CCeEEeecCCceEEEEEcCCCCeEEEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~~----G~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 212 (214)
|++|+.+.|+|++++.+.+.+. |.+......+ ...|+...++..|++.+.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 4789999999999999988776 8887644322 223333245567777654
No 117
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=90.91 E-value=1.4 Score=34.06 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.7
Q ss_pred CcceEEEEEECCHHHHHHHHHh-CCCeEEee-----cC------------C-----ceEEEEEcCCCCeEEEEeec
Q 028083 161 GRDRHTCIAIRDVSKLKMILDK-AGISYTLS-----KS------------G-----RPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~-----~~------------g-----~~~~~~~DPdG~~iEl~~~~ 213 (214)
.++.|+++.|+|++++.+-.++ .|.++... .. + ....++..++|..||+.+..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 3689999999999999999976 69876310 00 1 22345555778889998864
No 118
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=90.88 E-value=1.4 Score=31.40 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeec---C--CceEEEEEcC---CCCeEEEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 212 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~---~--g~~~~~~~DP---dG~~iEl~~~ 212 (214)
|++|+++.|+|++++.+.+++ .|++..... . +....++.+. .|..++|.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 468999999999999999976 699875332 1 1344556554 6778888764
No 119
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.53 E-value=0.13 Score=39.11 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=31.6
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQ 47 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (214)
.++.|+++|++++|++++.+...+.+ +++.++..+.
T Consensus 48 ~~a~~~~~d~V~lS~~~~~~~~~~~~--~~~~L~~~~~ 83 (137)
T PRK02261 48 DAAIETDADAILVSSLYGHGEIDCRG--LREKCIEAGL 83 (137)
T ss_pred HHHHHcCCCEEEEcCccccCHHHHHH--HHHHHHhcCC
Confidence 56789999999999999999988877 7888888863
No 120
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=90.36 E-value=1.5 Score=31.38 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=26.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
.++.|+.|.|.|++++.+..++ .|.++...
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~ 100 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQE 100 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeecc
Confidence 5789999999999999999988 89988754
No 121
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=90.14 E-value=1.2 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhCCCeEEe--e-cCCceEEEEEcCCCCeEEEEe
Q 028083 172 DVSKLKMILDKAGISYTL--S-KSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~--~-~~g~~~~~~~DPdG~~iEl~~ 211 (214)
.++++.+.+.+.|+.+.. - .++.+.+...|.||+.+|++=
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 788999999999997643 2 456899999999999999973
No 122
>PRK11478 putative lyase; Provisional
Probab=88.99 E-value=2.8 Score=30.24 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=34.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEE-ECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~-~g~~~l~l~~ 146 (214)
.++.|++|.|.|++++.+-.++ .|.++...........+.+|+. .++..+++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4789999999999999998887 8998764221111122334443 2455566553
No 123
>PRK10291 glyoxalase I; Provisional
Probab=88.52 E-value=3.3 Score=30.19 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=39.5
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee-cCCCCCCceEEEEE-ECCeEEEEEecCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWLW-VGAEMIHLMELPN 149 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~-~~~~~~~~~~~~l~-~g~~~l~l~~~~~ 149 (214)
.++.|++|.|.|++++.+-.++ .|.++... .+........+|+. .++..+++++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 4689999999999999999987 89887642 22222222334533 4567888887654
No 124
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=88.43 E-value=3.3 Score=30.16 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=35.4
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcC--CCCeEEEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 212 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP--dG~~iEl~~~ 212 (214)
++.|+.+.|+|++++.+.+.+ .|.++.....+....++..+ .+..+++.+.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 368999999999999999976 89987654332234454443 3456777653
No 125
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=88.16 E-value=1.8 Score=29.83 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.1
Q ss_pred ceEEEEEECCHHHHHHHHH-hCCCeEEeecC-CceEEEEEcCCCCeEEEEee
Q 028083 163 DRHTCIAIRDVSKLKMILD-KAGISYTLSKS-GRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~-~~G~~~~~~~~-g~~~~~~~DPdG~~iEl~~~ 212 (214)
++|+++.|+|++++.+.+. ..|+....... .....++..+++..++|.+.
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 4799999999999999886 67887653322 12334555555567887754
No 126
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=87.60 E-value=2.7 Score=28.45 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.7
Q ss_pred EEEEEECCHHHHHHHHHh-CCCeEEeecC--CceEEEEEcCCCCeEEEEeec
Q 028083 165 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~-~G~~~~~~~~--g~~~~~~~DPdG~~iEl~~~~ 213 (214)
|+.+.++|++++.+.+.+ .|.+...... .....++.++ +..|+|.+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 789999999999999997 8998765543 3455666655 7888887654
No 127
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.36 E-value=3.9 Score=28.99 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=34.3
Q ss_pred ceEEEEEECCHHHHHHHHHh-CCCeEEee---c-CCceEEEEEcCCCCeEEEEee
Q 028083 163 DRHTCIAIRDVSKLKMILDK-AGISYTLS---K-SGRPAIFTRDPDANALEFTQV 212 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~-~G~~~~~~---~-~g~~~~~~~DPdG~~iEl~~~ 212 (214)
++|+++.|+|++++.+-+++ .|.+.... . .+....|+.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 58999999999999998876 58875321 1 222333444446778888753
No 128
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.31 E-value=3.5 Score=29.45 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=34.0
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcCC-CCeEEEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQV 212 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPd-G~~iEl~~~ 212 (214)
.+.|+.+.|+|++++.+.+.+ .|.++..... ..+++..++ +..|.|.+.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~~ 52 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEED 52 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEeC
Confidence 368999999999999999886 6998865432 234444443 456666553
No 129
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=87.09 E-value=4.8 Score=29.75 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=41.2
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEE-CCeEEEEEecCCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 150 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~-g~~~l~l~~~~~~ 150 (214)
.++.|++|.|.|++++.+-.++ .|.++...........+.+|++- ++..+++++...-
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 4688999999999999999998 89998753222133445555543 5678888875543
No 130
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=86.94 E-value=3.9 Score=32.67 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=39.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEE-ECCeEEEEEecCC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLMELPN 149 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~-~g~~~l~l~~~~~ 149 (214)
.++.|++|.|.|++++.+..++ .|.++... +........+|+. .++..++|++..+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~-p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKK-PDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeC-CccCCceeEEEEECCCCCEEEEEECCC
Confidence 4899999999999999999998 99988743 3222222334433 3566788877544
No 131
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=86.42 E-value=2.7 Score=30.07 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=30.1
Q ss_pred ceEEEEEECCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEE
Q 028083 163 DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 209 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl 209 (214)
+.|+++.|+|++++.+-.++.|.+......+...+.+..++|..+.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 36899999999999999988898764322211233344444444433
No 132
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.93 E-value=14 Score=28.43 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=60.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEe---eecCCC--C---CCceEEEEEECCeEEEEEecCCCCCCCCCCCCCCcce
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEIN---EARPHD--K---LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDR 164 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~---~~~~~~--~---~~~~~~~l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~ 164 (214)
++.-.-++-.+.++|..||.++|-=.-. .+.|.. + +..-.+-++.++..+.-+..... ....+...
T Consensus 5 kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~----~~f~fneA-- 78 (151)
T COG3865 5 KITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPN----TSFKFNEA-- 78 (151)
T ss_pred cceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCC----cCCCcCcc--
Confidence 4444445569999999999998865322 122221 1 12223446677754443322211 11223333
Q ss_pred EEEEEEC-----CHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEE
Q 028083 165 HTCIAIR-----DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 165 hiaf~V~-----dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~ 210 (214)
+.|.|. .+|++...|...|- .-...-+++|-.|.-|.|.
T Consensus 79 -~S~~v~~~~q~E~Drlwnal~~~g~------e~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 79 -FSFQVACDDQEEIDRLWNALSDNGG------EAEACGWLKDKFGVSWQIV 122 (151)
T ss_pred -EEEEEEcCCHHHHHHHHHHHhccCc------chhcceeEecccCcEEEEc
Confidence 555554 57778888888776 2234567888888888775
No 133
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=85.49 E-value=4.6 Score=28.51 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=34.0
Q ss_pred ceEEEEEECCHHHHHHHHHhC-CCeEEeec--C-Cc-eEEEEEcCC---CCeEEEEe
Q 028083 163 DRHTCIAIRDVSKLKMILDKA-GISYTLSK--S-GR-PAIFTRDPD---ANALEFTQ 211 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~~-G~~~~~~~--~-g~-~~~~~~DPd---G~~iEl~~ 211 (214)
+.|+++.|+|++++.+.+.+. |.+..... . +. ..+++..++ +..+++.+
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTY 57 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEe
Confidence 369999999999999999865 99875432 2 22 334454444 57788764
No 134
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.10 E-value=4.5 Score=28.21 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.8
Q ss_pred EEEEEECCHHHHHHHHHh-CCCeEEeec---CCceEEEEEcCCC--CeEEEEe
Q 028083 165 HTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDA--NALEFTQ 211 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~-~G~~~~~~~---~g~~~~~~~DPdG--~~iEl~~ 211 (214)
|+++.|+|++++.+.+.+ .|+++.... .+...+.+.++++ ..+++.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeC
Confidence 899999999999999987 899886543 2345555666654 3555543
No 135
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=84.18 E-value=5.8 Score=28.46 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=31.7
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcC-CCCeEEEE
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-DANALEFT 210 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP-dG~~iEl~ 210 (214)
++.|+++.|+|++++.+-++. .|.+......+. ..++..+ .++.+.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPEDG-ALYLRMDDRAWRIAVH 51 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCCC-eEEEEccCCceEEEEE
Confidence 468999999999999999976 699875432222 3444433 34445554
No 136
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=83.82 E-value=4.5 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=25.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
.++.|++|.|.|++++.+..++ .|.++...
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 4788999999999999999887 79887653
No 137
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=83.52 E-value=14 Score=29.52 Aligned_cols=77 Identities=17% Similarity=0.085 Sum_probs=44.0
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEE-----EEECCeEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW-----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~-----l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
..+|||+++|.+.+.|..|-+..+-.--.-..-.-.++--..| +..++..+..++.+-|..- .-.-.|.-||
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K---~Yp~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK---RYPQEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS-----SS-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC---CCCCCCceEE
Confidence 4799999999999999999998776643221111112212222 4567888888887766431 1134688999
Q ss_pred EEEEC
Q 028083 167 CIAIR 171 (214)
Q Consensus 167 af~V~ 171 (214)
-|-++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99998
No 138
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=82.22 E-value=7.9 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.0
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTL 189 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~ 189 (214)
|++|+++.|.|++++.+-+.. .|.++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~ 29 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVE 29 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEe
Confidence 478999999999999998876 6998754
No 139
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=81.76 E-value=8.2 Score=29.01 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=38.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee-cCCCCCCceEEEEE-ECCeEEEEEecC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWLW-VGAEMIHLMELP 148 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~-~~~~~~~~~~~~l~-~g~~~l~l~~~~ 148 (214)
.++.|+.|.|.|++++.+...+ .|.++... .+........+|+. ..+..+++++..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 4789999999999999999988 99887642 22222222344433 356788887654
No 140
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=81.11 E-value=7.3 Score=27.75 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=32.8
Q ss_pred ceEEEEEECCHHHHHHHHHh----CCCeEEeecCCceEEEEEcC-CCCeEEEEee
Q 028083 163 DRHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQV 212 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~----~G~~~~~~~~g~~~~~~~DP-dG~~iEl~~~ 212 (214)
+.|+.+.|+|++++.+-+++ .|.+......+. .+.+..+ .+..+.++..
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPG-AVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCc-eeEeccCCCCceEEEecc
Confidence 36999999999999998887 488875443222 3344444 3566666553
No 141
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.77 E-value=7 Score=27.49 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=25.0
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 190 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~ 190 (214)
++.|+.+.|+|++++.+-+++ .|.+....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 578999999999999999887 69887644
No 142
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=80.36 E-value=8.8 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=24.6
Q ss_pred cceEEEEEECCHHHHHHHHHhCCCeEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDKAGISYTL 189 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~~G~~~~~ 189 (214)
++.|+++.|+|++++.+.+...|+.+..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5789999999999999988888988754
No 143
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=79.22 E-value=11 Score=26.41 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=32.5
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcC--CCCeEEEE
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFT 210 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP--dG~~iEl~ 210 (214)
++.|+.+.|+|++++.+-+.+ .|.++..... ...++..+ +...+.+.
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~ 51 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCSEDDHHSLVLT 51 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecCCCCcEEEEEE
Confidence 468999999999999998887 7998765432 23455544 23344443
No 144
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=78.75 E-value=28 Score=26.87 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=47.0
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEE-----EEECCeEEEEEecCCCCCCCCCCCCCCcceEEEE
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW-----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 168 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~-----l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hiaf 168 (214)
+|||.+.|.+.+.|-+|-+..+-.--.-..-.-.++--..| +..++..+..++.+-|..- .-...|.-||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k---~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDK---KYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC---CCCCCCceEEEE
Confidence 69999999999999999988665422211111112212222 4456778888887766321 113457899999
Q ss_pred EEC
Q 028083 169 AIR 171 (214)
Q Consensus 169 ~V~ 171 (214)
-++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 998
No 145
>PRK11700 hypothetical protein; Provisional
Probab=78.72 E-value=27 Score=28.05 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=48.0
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEE-----EEECCeEEEEEecCCCCCCCCCCCCCCcceEE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW-----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 166 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~-----l~~g~~~l~l~~~~~~~~~~~~~~~g~g~~hi 166 (214)
..+|||.++|.+.+.|-+|-+..+-.--.-..-.-.++--..| +..++..+..++.+-|..- .. ...|.-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k-~Y--p~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEK-RY--PHEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CC--CCCCceEE
Confidence 4689999999999999999887554422211111111212222 4456778888887766331 11 23578999
Q ss_pred EEEEC
Q 028083 167 CIAIR 171 (214)
Q Consensus 167 af~V~ 171 (214)
-+-++
T Consensus 115 ElVlp 119 (187)
T PRK11700 115 ELVLP 119 (187)
T ss_pred EEEec
Confidence 99998
No 146
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=78.53 E-value=14 Score=27.07 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=32.9
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcC---CCCeEEEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP---DANALEFTQ 211 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP---dG~~iEl~~ 211 (214)
++.|+++.|+|++++.+-+++ .|.++...... ...|+..+ ..+.+++..
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 578999999999999998865 59987543222 23344443 235666654
No 147
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=77.41 E-value=14 Score=27.96 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=34.4
Q ss_pred CcceEEEEEECCHHHHHHHHHh-CCCeEEeec--C-----CceEEEEE-cCCCCeEEEEe
Q 028083 161 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSK--S-----GRPAIFTR-DPDANALEFTQ 211 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~--~-----g~~~~~~~-DPdG~~iEl~~ 211 (214)
.++.|+++.|+|++++.+-+++ .|.++.... . +....++. ++..+.+++.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 4689999999999999998876 798864321 1 22333333 45567777654
No 148
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=76.99 E-value=11 Score=25.91 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.7
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
.+..|+.|.|.|++++.+...+ +|.++...
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 5789999999999999999998 99997643
No 149
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=76.51 E-value=15 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.9
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 190 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~ 190 (214)
++.|+.+.|+|++++.+-+.+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 578999999999999999975 79987644
No 150
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=75.72 E-value=33 Score=26.52 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=49.1
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCc--eEEEEEEC-----CeEEEEEecCCCCCC-CCCCCCCCcc
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY--RGAWLWVG-----AEMIHLMELPNPDPL-SGRPEHGGRD 163 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~--~~~~l~~g-----~~~l~l~~~~~~~~~-~~~~~~g~g~ 163 (214)
.++..+++.+.|+++..+-.+. .|++...+...++... ...++..+ ...-.+++...+.+. ...++...++
T Consensus 76 ~g~~~~~l~t~d~~~~~~~l~~-~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i 154 (175)
T PF13468_consen 76 EGLYGWALRTDDIEAVAARLRA-AGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGI 154 (175)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHT-TT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEE
T ss_pred CCeEEEEEecCCHHHHHHHHHh-cCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceE
Confidence 6899999999999999999997 9986332211112111 11222222 122334444444221 2334555688
Q ss_pred eEEEEEECCHHHHHHHHHh
Q 028083 164 RHTCIAIRDVSKLKMILDK 182 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~ 182 (214)
.++.+.++|.+++.+.+.+
T Consensus 155 ~~v~i~~~d~~~~~~~~~~ 173 (175)
T PF13468_consen 155 TRVVIAVPDPDAAAARYAR 173 (175)
T ss_dssp EEEEEEETTHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHh
Confidence 9999999999888777654
No 151
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=74.34 E-value=19 Score=25.31 Aligned_cols=53 Identities=6% Similarity=-0.163 Sum_probs=33.0
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEE-EECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWL-WVGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l-~~g~~~l~l~~ 146 (214)
.+++|++|.|.|.++..+.... +|............. ..+|+ ..++..+++..
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAAL-PGASVIDDLEAPGGG-KRVTLTDPDGFPVELVY 109 (113)
T ss_pred CcccEEEEEECCHHHHHHHHHc-CCCeeecCCCCCCCc-eEEEEECCCCCEEEEEe
Confidence 4788999999999999888665 888765321111211 23333 33455666654
No 152
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=73.07 E-value=0.98 Score=43.58 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=57.1
Q ss_pred CcccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeeceeeecCccCccchhhhccCCCCccccCCc
Q 028083 9 TAIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIETATNGKHNIKEIRD 88 (214)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (214)
..+++++++++|+||++.+.+...+++ +++.++..| ......+.++.+.++... .
T Consensus 626 v~aa~~~~a~ivvlcs~d~~~~e~~~~--l~~~Lk~~G----~~~v~vl~GG~~~~~~~~-------------------~ 680 (714)
T PRK09426 626 ARQAVENDVHVVGVSSLAAGHKTLVPA--LIEALKKLG----REDIMVVVGGVIPPQDYD-------------------F 680 (714)
T ss_pred HHHHHHcCCCEEEEeccchhhHHHHHH--HHHHHHhcC----CCCcEEEEeCCCChhhHH-------------------H
Confidence 367899999999999999999999888 899999998 322323333333221110 0
Q ss_pred ceeeeEeEEEEEcCCHHHHHHHHHHhcC
Q 028083 89 YGVVSVHHVGILCENLERSLEFYQNILG 116 (214)
Q Consensus 89 ~~i~~i~HV~l~V~D~~~a~~FY~~~LG 116 (214)
..-.|+|-+...=.|+.+..+.+.+.|-
T Consensus 681 l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 681 LYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred HHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1114666666666789999998888663
No 153
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=72.60 E-value=20 Score=25.17 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEee
Q 028083 96 HVGILCENLERSLEFYQNILGLEINE 121 (214)
Q Consensus 96 HV~l~V~D~~~a~~FY~~~LGf~~~~ 121 (214)
|+.|.|.|+++..+...+ .|.++..
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~ 93 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVL 93 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeee
Confidence 899999999999999998 7887653
No 154
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=71.97 E-value=19 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.8
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEee
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 190 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~ 190 (214)
++.|+.+.|+|++++.+-+.+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 578999999999999999976 79887644
No 155
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.36 E-value=38 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=23.7
Q ss_pred cceEEEEEECCHHHHHHHHH-hCCCeEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILD-KAGISYTL 189 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~-~~G~~~~~ 189 (214)
++.|+++.|.|+++.++-.. ..|.+...
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 46899999999999999995 57998643
No 156
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.34 E-value=21 Score=25.51 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=22.0
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEE
Q 028083 164 RHTCIAIRDVSKLKMILDKAGISYT 188 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~~G~~~~ 188 (214)
+.+.+.|+|++++.+-.+..|.+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 5789999999999999988898865
No 157
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=71.33 E-value=1.5 Score=35.88 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=31.7
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQ 47 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (214)
.++.+++.|+++||++.+.+...+.+ +++.++..+.
T Consensus 133 ~~~~~~~~~~V~lS~~~~~~~~~~~~--~i~~L~~~~~ 168 (213)
T cd02069 133 EAAKEHKADIIGLSGLLVPSLDEMVE--VAEEMNRRGI 168 (213)
T ss_pred HHHHHcCCCEEEEccchhccHHHHHH--HHHHHHhcCC
Confidence 45678999999999999999999888 8999998874
No 158
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=71.08 E-value=21 Score=25.49 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=31.8
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEEEcCCCCeEEEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
++.|+++.|+|++++.+-.++ .|.+..... + ...++...+|..+++.+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~-~-~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF-G-PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc-C-CEEEEEcCCCcEEEEec
Confidence 468999999999999998865 598775422 1 12333334455666554
No 159
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=70.77 E-value=20 Score=25.82 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=31.6
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEeecCCceEEEE-EcCCCCeEEEE
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFT-RDPDANALEFT 210 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~-~DPdG~~iEl~ 210 (214)
++.|+.+.|+|++++.+.+++ .|.+......+ ..|+ .+.+++.+-+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 468999999999999999877 59887543222 2333 34445555554
No 160
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=70.66 E-value=20 Score=26.21 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=22.2
Q ss_pred ceEEEEEECCHHHHHHHHHh-CCCeEE
Q 028083 163 DRHTCIAIRDVSKLKMILDK-AGISYT 188 (214)
Q Consensus 163 ~~hiaf~V~dv~~~~~~l~~-~G~~~~ 188 (214)
++|+++.|+|++++.+.+.+ .|.++.
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~ 27 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLL 27 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEe
Confidence 47999999999999998886 588765
No 161
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=70.32 E-value=27 Score=26.39 Aligned_cols=54 Identities=9% Similarity=-0.073 Sum_probs=32.6
Q ss_pred eeEeEEEEEcCCHHHHHHHHHH--hcCCEEeeecCCCC--CCceEEEEE-ECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQN--ILGLEINEARPHDK--LPYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~--~LGf~~~~~~~~~~--~~~~~~~l~-~g~~~l~l~~ 146 (214)
.+++|++|.|.|++++..++.. ..|+++... +... ......|+. .++..+++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~-~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWG-VGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeec-CCccCCCCCEEEEEECCCCCEEEEEc
Confidence 6899999999999999844433 278877642 2111 111223333 3455677653
No 162
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=67.81 E-value=38 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.9
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
..|+.+.|.|++++.+-.++ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 46899999999999999987 89887653
No 163
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=66.23 E-value=28 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred CcceEEEEEECCHHHHHHHHHh-CCCeEEe
Q 028083 161 GRDRHTCIAIRDVSKLKMILDK-AGISYTL 189 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~~-~G~~~~~ 189 (214)
.++.|+.+.|+|+++..+-+.+ .|++...
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEE
Confidence 3689999999999999988876 6887653
No 164
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=66.01 E-value=32 Score=25.76 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.0
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEE
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYT 188 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~ 188 (214)
++.|+.+.|+|++++.+-+++ .|.+..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 578999999999999998854 788764
No 165
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=65.94 E-value=42 Score=23.25 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=25.2
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
....|+.|.|.|++++.+-..+ .|.++...
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~-~g~~~~~~ 89 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEA-AGGKVLVP 89 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEEeC
Confidence 3567899999999999999988 89988754
No 166
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=65.88 E-value=24 Score=25.07 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=28.9
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHh--cCCEEeeecCCCCCCceEEEEEECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDKLPYRGAWLWVGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~--LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~ 146 (214)
.+++|+++.|.|.+.-.++++.+ .|.++.......+......+...++.++++..
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEE
Confidence 47899999998665555555432 67665322111122222222333555666653
No 167
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=65.85 E-value=31 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=23.9
Q ss_pred eeEeEEEEEcC--CHHHHHHHHHHhcCCEEee
Q 028083 92 VSVHHVGILCE--NLERSLEFYQNILGLEINE 121 (214)
Q Consensus 92 ~~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~ 121 (214)
.+++|++|.+. |++++.+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 46789999887 89998888887 8988764
No 168
>PRK06724 hypothetical protein; Provisional
Probab=65.31 E-value=28 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=27.9
Q ss_pred CcceEEEEEECCHHHHHHHHHh----CCCeEEee---cCCceEEEEEcCC
Q 028083 161 GRDRHTCIAIRDVSKLKMILDK----AGISYTLS---KSGRPAIFTRDPD 203 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~~----~G~~~~~~---~~g~~~~~~~DPd 203 (214)
.+++|+++.|+|+++..+..++ .|.+.... ..|...+++..++
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~~~l~l~~~~ 55 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGESEIYFKEVD 55 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCCeeEEEecCC
Confidence 4689999999999998776665 57665311 1333445555443
No 169
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.96 E-value=15 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=22.2
Q ss_pred ceEEEEEEC--CHHHHHHHHHhCCCeEEee
Q 028083 163 DRHTCIAIR--DVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 163 ~~hiaf~V~--dv~~~~~~l~~~G~~~~~~ 190 (214)
...+.|+++ |.+++.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344666665 8889999999999998875
No 170
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.64 E-value=45 Score=23.43 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=22.4
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEEee
Q 028083 95 HHVGILCENLERSLEFYQNILGLEINE 121 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~~~ 121 (214)
.|+.|.|.|++++.+...+ .|.++..
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~ 98 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVS 98 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEecc
Confidence 4899999999999999987 7888764
No 171
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=63.01 E-value=40 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEeEEEEEcC--CHHHHHHHHHHhcCCEEee
Q 028083 93 SVHHVGILCE--NLERSLEFYQNILGLEINE 121 (214)
Q Consensus 93 ~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~ 121 (214)
+++|++|.|. |+++..+-.++ .|.++..
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 6899999998 56666666665 7887653
No 172
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=62.60 E-value=26 Score=24.23 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=32.0
Q ss_pred eeEeEEEEEcC--CHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEE-ECCeEEEEEe
Q 028083 92 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~--D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~-~g~~~l~l~~ 146 (214)
.++.|++|.|. |+++..+-.++ .|.++...........+.+|+. .++..++++.
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 45789999984 67777777776 7888764322211122334433 3566677653
No 173
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=62.43 E-value=10 Score=32.73 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCcceEEEEEE------CCHHHHHHHHHhCCCeEE
Q 028083 159 HGGRDRHTCIAI------RDVSKLKMILDKAGISYT 188 (214)
Q Consensus 159 ~g~g~~hiaf~V------~dv~~~~~~l~~~G~~~~ 188 (214)
+|..++|+...| .||+++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 567889999999 999999999999999875
No 174
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=61.70 E-value=3.5 Score=42.25 Aligned_cols=84 Identities=10% Similarity=0.130 Sum_probs=55.7
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeeceeeecCccCccchhhhccCCCCccccCCcc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIETATNGKHNIKEIRDY 89 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (214)
.++.++++|+||||++.+.+....-+ +++.++..+..+. .-++|..+++.... ..-.
T Consensus 796 ~aa~e~~~diVgLS~L~t~s~~~m~~--~i~~L~~~g~~v~----v~vGGa~~s~~~ta---------------~~i~-- 852 (1229)
T PRK09490 796 ETAKEENADIIGLSGLITPSLDEMVH--VAKEMERQGFTIP----LLIGGATTSKAHTA---------------VKIA-- 852 (1229)
T ss_pred HHHHHhCCCEEEEcCcchhhHHHHHH--HHHHHHhcCCCCe----EEEEeeccchhhhh---------------hhhh--
Confidence 45778999999999999999999877 8999999985333 33444444431100 0000
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCCE
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGLE 118 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf~ 118 (214)
.......+++.|+-+++.+-.++++-+
T Consensus 853 --~~y~gad~y~~DA~~~v~~~~~l~~~~ 879 (1229)
T PRK09490 853 --PNYSGPVVYVTDASRAVGVVSSLLSDE 879 (1229)
T ss_pred --hcccCCcEEecCHHHHHHHHHHHhCcc
Confidence 011135678888888888888877653
No 175
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.72 E-value=24 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred cceEEEEEECCHHHHHHHHHhCCCeE
Q 028083 162 RDRHTCIAIRDVSKLKMILDKAGISY 187 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~~G~~~ 187 (214)
+...+.+++++.+++.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 34678999999999999999999875
No 176
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=60.11 E-value=47 Score=24.74 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=32.0
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHh--cCCEEeeecCCCCC--CceEEEEE-ECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDKL--PYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~--LGf~~~~~~~~~~~--~~~~~~l~-~g~~~l~l~~ 146 (214)
.+++|++|.|.|+++..+.+..+ .|.++... |.... .....|+. .++.++++..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~-p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIG-PTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEEC-CcCCCCCCceEEEEECCCCCEEEEec
Confidence 47899999999999865544432 78876532 21111 12233433 3566777754
No 177
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=59.71 E-value=53 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.6
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTL 189 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~ 189 (214)
|+.|+.+.|+|++++.+.+.+ .|.+...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEE
Confidence 468999999999999998875 7888654
No 178
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=59.53 E-value=54 Score=24.47 Aligned_cols=55 Identities=7% Similarity=0.002 Sum_probs=31.1
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHh--cCCEEeeecCC-CCCCceEEEEEE-CCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~--LGf~~~~~~~~-~~~~~~~~~l~~-g~~~l~l~~ 146 (214)
.+++|++|.|.|.+...++|+.+ .|.++...... ........|+.- ++..+++..
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 68999999999877555555442 67776532111 111122234433 456677654
No 179
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=59.28 E-value=45 Score=24.09 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=31.2
Q ss_pred eEEEEEECCHHHHHHHHHh-CCCeEEeecC--C-ceEEEEEcC-CCCeEEEEe
Q 028083 164 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDP-DANALEFTQ 211 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~~-~G~~~~~~~~--g-~~~~~~~DP-dG~~iEl~~ 211 (214)
.|+++.|+|++++.+-+.+ .|++...... + ....+++.. .++.+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4899999999999998876 7988753221 2 233444443 344566654
No 180
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=58.44 E-value=59 Score=22.54 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=23.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
+..|+.|.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~ 96 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMP 96 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecC
Confidence 466999999999998777766 78887643
No 181
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=58.08 E-value=2.4 Score=34.15 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQ 47 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (214)
.++.+++.|+|+||++++.+...+.+ +++.+|..+.
T Consensus 127 ~~~~~~~~d~v~lS~~~~~~~~~~~~--~i~~lr~~~~ 162 (201)
T cd02070 127 EAVKEHKPDILGLSALMTTTMGGMKE--VIEALKEAGL 162 (201)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHH--HHHHHHHCCC
Confidence 35678899999999999999888777 7888888874
No 182
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=57.77 E-value=51 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.4
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCE
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLE 118 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~ 118 (214)
.+-.|+.+.|.|++++.+-..+ .|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3555899999999999999988 8987
No 183
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=55.42 E-value=19 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=26.1
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEee
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINE 121 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~ 121 (214)
.|+.||+|.|.|++++.+-.++ -|.++..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~ 110 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRA-RGVEFLP 110 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHH-cCCeecc
Confidence 5899999999999999999998 7887764
No 184
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.80 E-value=2.7 Score=30.99 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=30.9
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQ 47 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (214)
.++.+++.|+|++|++.+.+.....+ .++.+++.+.
T Consensus 44 ~~a~~~~~d~V~iS~~~~~~~~~~~~--~~~~L~~~~~ 79 (122)
T cd02071 44 EAAIQEDVDVIGLSSLSGGHMTLFPE--VIELLRELGA 79 (122)
T ss_pred HHHHHcCCCEEEEcccchhhHHHHHH--HHHHHHhcCC
Confidence 56789999999999999999888877 7888888864
No 185
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.33 E-value=53 Score=22.76 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=28.8
Q ss_pred EEEEECCHHHHHHHHHhC-CCeEEeecCCceEEEEEcCCCCeEEEEe
Q 028083 166 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 166 iaf~V~dv~~~~~~l~~~-G~~~~~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
|.+.|+|++++.+-+.+. |+++..... ....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-DGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-CceEEEEc-CCeEEEEec
Confidence 678999999999988766 888754411 12233333 566666654
No 186
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=52.19 E-value=23 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.3
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEEe
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYTL 189 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~~ 189 (214)
++.|+++.|+|++++.+-.+. .|.+...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~ 30 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVK 30 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeee
Confidence 468999999999999999987 8888754
No 187
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.90 E-value=78 Score=21.95 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=31.0
Q ss_pred eEEEEEECCHHHHHHHHH-hCCCeEEeecCCceEEEEEcCCCCeEEEEe
Q 028083 164 RHTCIAIRDVSKLKMILD-KAGISYTLSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 164 ~hiaf~V~dv~~~~~~l~-~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
.|+++.|.|++++.+..+ ..|.+......+ ...++.-.++..+.+++
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKEDR-RLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCCC-ceEEEEcCCCcEEEEEe
Confidence 478999999999999997 469887653222 23444444445555543
No 188
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=49.81 E-value=92 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred cceEEEEEECCHHHHHHHHHh-CCCeEE
Q 028083 162 RDRHTCIAIRDVSKLKMILDK-AGISYT 188 (214)
Q Consensus 162 g~~hiaf~V~dv~~~~~~l~~-~G~~~~ 188 (214)
+++|+++.|+|++++.+-+++ .|.+..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 578999999999999998876 798764
No 189
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=49.60 E-value=1.2e+02 Score=23.25 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.0
Q ss_pred CcceEEEEEECCHHHHHHHHH-hCCCeEE
Q 028083 161 GRDRHTCIAIRDVSKLKMILD-KAGISYT 188 (214)
Q Consensus 161 ~g~~hiaf~V~dv~~~~~~l~-~~G~~~~ 188 (214)
.+++|+++.|+|++++.+.++ ..|++..
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~ 33 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLR 33 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEE
Confidence 367899999999999999997 4798864
No 190
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=48.00 E-value=7.4 Score=39.83 Aligned_cols=83 Identities=8% Similarity=0.123 Sum_probs=55.1
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccceeeeceeeeeeceeeecCccCccchhhhccCCCCccccCCcc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIETATNGKHNIKEIRDY 89 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (214)
.++.++++|+||||+|.+.+....-+ +++.++..+..+ ..-++|..++++-.. ..-.+
T Consensus 777 ~aa~e~~~diVgLS~Lmt~t~~~m~~--vi~~L~~~g~~v----~v~vGGa~~s~~~~~---------------~~i~~- 834 (1178)
T TIGR02082 777 EAAKDHNADVIGLSGLITPSLDEMKE--VAEEMNRRGITI----PLLIGGAATSKTHTA---------------VKIAP- 834 (1178)
T ss_pred HHHHHhCCCEEEEcCcccccHHHHHH--HHHHHHhcCCCc----eEEEeccccchhHHH---------------hhhhh-
Confidence 35678999999999999999998877 899999998533 333444444432100 00000
Q ss_pred eeeeEeEEEEEcCCHHHHHHHHHHhcCC
Q 028083 90 GVVSVHHVGILCENLERSLEFYQNILGL 117 (214)
Q Consensus 90 ~i~~i~HV~l~V~D~~~a~~FY~~~LGf 117 (214)
......+++.|+-++++.-+++++-
T Consensus 835 ---~~~gad~y~~dA~~av~~~~~l~~~ 859 (1178)
T TIGR02082 835 ---IYKGPVVYVLDASRAVTVMDTLMSA 859 (1178)
T ss_pred ---hccCCeEEecCHHHHHHHHHHHhCc
Confidence 1112457888888888888888764
No 191
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=45.61 E-value=1e+02 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred EEEEEECCHHHHHHHHHh-CCCeEEe
Q 028083 165 HTCIAIRDVSKLKMILDK-AGISYTL 189 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~-~G~~~~~ 189 (214)
|+.+.|+|++++.+..++ .|.++..
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~ 27 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGR 27 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEee
Confidence 899999999999999975 7988753
No 192
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.65 E-value=58 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCeEEeec---CC---ceEEEEEcCCCCeE
Q 028083 173 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 207 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~i 207 (214)
+-+...-+...|+.+..-+ .| ...||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4566778889999985432 22 56899999999876
No 193
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.32 E-value=6.4 Score=31.65 Aligned_cols=36 Identities=14% Similarity=-0.054 Sum_probs=31.3
Q ss_pred cccccccccEEeeeeccccccccccccceeeccccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQ 47 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (214)
.++.+++.|+|++|++.+.+...+.+ +++.+|..+.
T Consensus 129 ~~~~~~~pd~v~lS~~~~~~~~~~~~--~i~~l~~~~~ 164 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTTTMYGQKD--INDKLKEEGY 164 (197)
T ss_pred HHHHHcCCCEEEEccccccCHHHHHH--HHHHHHHcCC
Confidence 35678999999999999999999877 8899999874
No 194
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=40.83 E-value=1.2e+02 Score=21.05 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=31.7
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHh--cCCEEeeecCCC--CCCceEEEEE-ECCeEEEEEe
Q 028083 92 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHD--KLPYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~--LGf~~~~~~~~~--~~~~~~~~l~-~g~~~l~l~~ 146 (214)
.+++|++|.|.|.+...++|+.+ .|.++....... ....+..|+. .++..++++.
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 57899999999966655565553 577765432111 1112234443 3556677665
No 195
>PRK09732 hypothetical protein; Provisional
Probab=39.83 E-value=86 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEeec
Q 028083 173 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
++++.+++++.|+++. +.+.|..||++-|...+
T Consensus 16 ~~aA~~~A~~~g~~v~--------iaVvD~~G~l~a~~RmD 48 (134)
T PRK09732 16 IAAGQEEAQKNNWSVS--------IAVADDGGHLLALSRMD 48 (134)
T ss_pred HHHHHHHHHHhCCCEE--------EEEEcCCCCEEEEEEcC
Confidence 4567778888888654 66888888888777654
No 196
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.17 E-value=66 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=22.8
Q ss_pred ceEEEEEECC----HHHHHHHHHhCCCeEEe
Q 028083 163 DRHTCIAIRD----VSKLKMILDKAGISYTL 189 (214)
Q Consensus 163 ~~hiaf~V~d----v~~~~~~l~~~G~~~~~ 189 (214)
...+.++++| ++++.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3567889888 99999999999998764
No 197
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=38.14 E-value=1.2e+02 Score=21.21 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.4
Q ss_pred eEEEEEcCCHHHHHHHHHHhcCCEE
Q 028083 95 HHVGILCENLERSLEFYQNILGLEI 119 (214)
Q Consensus 95 ~HV~l~V~D~~~a~~FY~~~LGf~~ 119 (214)
.|+.+.|.|+++..+-.++ .|.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l~~-~G~~~ 83 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRA-AGLPE 83 (120)
T ss_pred ceEEEEeCCHHHHHHHHHH-hCccc
Confidence 4678999999999999988 88764
No 198
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.32 E-value=9.3 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=28.2
Q ss_pred cccccccccEEeeeeccccccccccccceeecccccc
Q 028083 10 AIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNG 46 (214)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (214)
.++.+++.|+|++|++.+.+.....+ .++.+|..+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~--~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKE--VIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHH--HHHHHHHcC
Confidence 45688999999999998888877666 677777765
No 199
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.09 E-value=1.5e+02 Score=20.67 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCC-EEeeecCCCCCCceEEEEE-ECCeEEEEEe
Q 028083 93 SVHHVGILCENLERSLEFYQNILGL-EINEARPHDKLPYRGAWLW-VGAEMIHLME 146 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf-~~~~~~~~~~~~~~~~~l~-~g~~~l~l~~ 146 (214)
+-.|+.|.|.|+++..+-.++ .|. ++.........+.+.+|++ .++..+++.+
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEec
Confidence 346999999999999999998 654 5543222122222344443 3444555543
No 200
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=33.41 E-value=1.6e+02 Score=20.17 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=19.8
Q ss_pred eeEeEEEEEcCCHH---HHHHHHHHhcCCEEee
Q 028083 92 VSVHHVGILCENLE---RSLEFYQNILGLEINE 121 (214)
Q Consensus 92 ~~i~HV~l~V~D~~---~a~~FY~~~LGf~~~~ 121 (214)
.+..|+.|.|.|.+ ++.+..++ .|.++..
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~-~g~~v~~ 89 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQA-KGVKIIQ 89 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHH-CCCeEec
Confidence 46789999998744 44444454 7777764
No 201
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.15 E-value=1.8e+02 Score=20.28 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.8
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
+-.|+.|.|.|++++.+=... .|.++...
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 456899999999888777776 78887743
No 202
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.69 E-value=33 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHhcCCEEee
Q 028083 102 ENLERSLEFYQNILGLEINE 121 (214)
Q Consensus 102 ~D~~~a~~FY~~~LGf~~~~ 121 (214)
.|..+++.||.+.||+++..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 46788899999999999874
No 203
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=31.45 E-value=54 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=19.6
Q ss_pred eeEeEEEEEc-CCHHHHHHHHHHhcCCE
Q 028083 92 VSVHHVGILC-ENLERSLEFYQNILGLE 118 (214)
Q Consensus 92 ~~i~HV~l~V-~D~~~a~~FY~~~LGf~ 118 (214)
.++..+.+.+ .+-..+.+||++ +||+
T Consensus 57 ~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 57 RGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred cCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 3577777766 555569999998 9985
No 204
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=30.75 E-value=1.5e+02 Score=22.70 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEeec
Q 028083 173 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+.++.++.++.|+++. +-+.|..||..-|...|
T Consensus 17 i~aA~a~a~~~g~~Vt--------vaVVD~~G~~~a~~RmD 49 (141)
T COG3193 17 IAAAVAEAQQLGVPVT--------VAVVDAGGHLVALERMD 49 (141)
T ss_pred HHHHHHHHHHhCCceE--------EEEECCCCCEEEEEecC
Confidence 5567788888888765 55778888887777655
No 205
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=30.26 E-value=2.5e+02 Score=21.35 Aligned_cols=56 Identities=14% Similarity=0.028 Sum_probs=33.2
Q ss_pred eeEeEEEEEcCCHHHHHHHHHHhcCCEEeeecCCCCCCceEEEEEECCeEEEEEecC
Q 028083 92 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELP 148 (214)
Q Consensus 92 ~~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~l~~g~~~l~l~~~~ 148 (214)
.++.-|+|.|.|.+++.+-=.. +|-+........+....-+.-..|+..+.|++..
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~~-~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAVA-LGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHHH-TT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--
T ss_pred CEEEEEEEEeCCHHHHHHHHHH-cCCcCcccCCCCCcEeeeeEEccCCCEEEEEecC
Confidence 4789999999999999998887 9988875432222211123334577777777653
No 206
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=28.99 E-value=44 Score=18.55 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=13.8
Q ss_pred EcCCHHHHHHHHHHhcCC
Q 028083 100 LCENLERSLEFYQNILGL 117 (214)
Q Consensus 100 ~V~D~~~a~~FY~~~LGf 117 (214)
..+|.++|+++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 357899999999997744
No 207
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=28.17 E-value=14 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=17.2
Q ss_pred EeEEEEEcCCHHHHHHHHHHhc
Q 028083 94 VHHVGILCENLERSLEFYQNIL 115 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~L 115 (214)
++-.++.+.+.++..+||...|
T Consensus 12 ~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 12 VDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cccCCCccccccchhHHHHHHH
Confidence 4555666688899999999865
No 208
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=27.58 E-value=97 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred ECCHHHHHHHHHhCCCeEEee-----cCCceEEEEEcCCCCeEEEEeec
Q 028083 170 IRDVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 170 V~dv~~~~~~l~~~G~~~~~~-----~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
+.+..+.+.+|++.|.--+.. ..|.-.+...|++|..+|-..+.
T Consensus 23 ik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 346778899999999433322 13566677899999999877653
No 209
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.30 E-value=1.6e+02 Score=19.82 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCeEEeec---CC---ceEEEEEcCCCCeEE
Q 028083 173 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANALE 208 (214)
Q Consensus 173 v~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~iE 208 (214)
+-+...-|...|+.+...+ .| ...||++|.+|..++
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 4455677888899875322 22 568999999998763
No 210
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=26.15 E-value=65 Score=24.05 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=49.7
Q ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEEeee------cC-CCCCCceEE-EEEECCeEEEEE-ecCCCCCCCCCCCCCCcce
Q 028083 94 VHHVGILCENLERSLEFYQNILGLEINEA------RP-HDKLPYRGA-WLWVGAEMIHLM-ELPNPDPLSGRPEHGGRDR 164 (214)
Q Consensus 94 i~HV~l~V~D~~~a~~FY~~~LGf~~~~~------~~-~~~~~~~~~-~l~~g~~~l~l~-~~~~~~~~~~~~~~g~g~~ 164 (214)
+.-+.+.|++++.+.+-..+ -||.+... .+ .++.-.+.+ .+.--+..+..+ .+...+ --.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----------~KA 110 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----------QKA 110 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----------ceE
Confidence 44456789999999999998 89977532 11 111100000 011111222221 111111 113
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEee
Q 028083 165 HTCIAIRDVSKLKMILDKAGISYTLS 190 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~~G~~~~~~ 190 (214)
-+-++|+|+|++...|+.+|+++...
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 48899999999999999999987643
No 211
>PTZ00330 acetyltransferase; Provisional
Probab=26.02 E-value=88 Score=22.67 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=19.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 93 SVHHVGILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 93 ~i~HV~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
++..+.+.+. +.+.+||++ +||+..+.
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 4455566653 579999998 99998753
No 212
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=26.00 E-value=1.3e+02 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=17.0
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEeee
Q 028083 98 GILCENLERSLEFYQNILGLEINEA 122 (214)
Q Consensus 98 ~l~V~D~~~a~~FY~~~LGf~~~~~ 122 (214)
.....+=+.|..+|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344677889999999 99998753
No 213
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=25.93 E-value=2.1e+02 Score=23.04 Aligned_cols=47 Identities=11% Similarity=0.282 Sum_probs=33.6
Q ss_pred eEEEEEE--CCHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEe
Q 028083 164 RHTCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 211 (214)
Q Consensus 164 ~hiaf~V--~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~ 211 (214)
..+-+-| +|++++.+.|.+.|+..... .+....|...+.|..||+..
T Consensus 95 ~DiDlLV~~~d~~~a~~~L~~~Gy~~~~~-~~~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 95 GDIDLLVPPEDLERAVELLEELGYRIESP-SEHHWVYSHEPKGISIDLHW 143 (249)
T ss_pred CCeEEEEeCCcHHHHHHHHHHcCCEeccC-CCcceEEEecCCCEEEEEEe
Confidence 3466666 59999999999999987654 22334444448888888864
No 214
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.34 E-value=1.4e+02 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.5
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEE
Q 028083 165 HTCIAIRDVSKLKMILDKAGISYT 188 (214)
Q Consensus 165 hiaf~V~dv~~~~~~l~~~G~~~~ 188 (214)
.+-+.++|.+++.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 356667898899999999998763
No 215
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.90 E-value=40 Score=29.75 Aligned_cols=24 Identities=4% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEe
Q 028083 166 TCIAIRDVSKLKMILDKAGISYTL 189 (214)
Q Consensus 166 iaf~V~dv~~~~~~l~~~G~~~~~ 189 (214)
+|..++++++.++.++++|+.+..
T Consensus 105 la~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 105 LAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEe
Confidence 466677899999999999998743
No 216
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=23.79 E-value=1.4e+02 Score=18.82 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhCCCeEEeecCCceEEEEEcCCCCeEEEEeec
Q 028083 172 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 213 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~iEl~~~~ 213 (214)
++++.-++.-..|-.+.....++ ..-..+|||.+|-|++..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g-~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPG-PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S--EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCc-eEEEECCCCcEEEEEEcc
Confidence 44555556666777665432222 355889999999998653
No 217
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.57 E-value=1.3e+02 Score=19.25 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=20.5
Q ss_pred cceEEEEEEC---CHHHHHHHHHhCCCeE
Q 028083 162 RDRHTCIAIR---DVSKLKMILDKAGISY 187 (214)
Q Consensus 162 g~~hiaf~V~---dv~~~~~~l~~~G~~~ 187 (214)
+..++.++++ +++++.+.|++.|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 3456788886 5778899999999875
No 218
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=21.85 E-value=60 Score=26.74 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=28.7
Q ss_pred EEEECCHHHHHHHHHhCCCeEEee--cCCceEEEEEcCCCCeEEEE
Q 028083 167 CIAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 210 (214)
Q Consensus 167 af~V~dv~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~iEl~ 210 (214)
+|.-.|-+.+++.+ .|+.+... ..+...|++.|||||-.-+|
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhhc
Confidence 45555666777755 67777643 34577899999999976544
No 219
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=21.44 E-value=2.1e+02 Score=23.13 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCCcceEEEEEECCHHHHHHHHHhCCCeEEeec-----CCceEEEEEcCC
Q 028083 159 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPD 203 (214)
Q Consensus 159 ~g~g~~hiaf~V~dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPd 203 (214)
+|.++.+|-+.-.|+..+...++..|+.+.... +|.+.++|.-.|
T Consensus 30 ~g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 30 QGKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred cCCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 456677888877899999999999999875332 345777776554
No 220
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=21.32 E-value=1.7e+02 Score=17.73 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=12.8
Q ss_pred EEEEEcCCCCeEEEEe
Q 028083 196 AIFTRDPDANALEFTQ 211 (214)
Q Consensus 196 ~~~~~DPdG~~iEl~~ 211 (214)
...+.||||..+.+.-
T Consensus 30 sY~y~~pdG~~~~V~Y 45 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTY 45 (52)
T ss_pred EEEEECCCCCEEEEEE
Confidence 5778999999887753
No 221
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=1e+02 Score=26.65 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhCCCeEEeec-----CCceEEEEEcCC---CCeEEEEeec
Q 028083 172 DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPD---ANALEFTQVD 213 (214)
Q Consensus 172 dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPd---G~~iEl~~~~ 213 (214)
|++.+++.|++.|..-...+ ..+..+...+++ |.++|+-+..
T Consensus 33 d~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ET 82 (296)
T COG0264 33 DIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCET 82 (296)
T ss_pred CHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccc
Confidence 99999999999998753221 235566667777 6678887643
No 222
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.16 E-value=73 Score=20.68 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=14.7
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEE
Q 028083 97 VGILCENLERSLEFYQNILGLEI 119 (214)
Q Consensus 97 V~l~V~D~~~a~~FY~~~LGf~~ 119 (214)
+.+.+ + .++.+||+. +||++
T Consensus 60 i~l~~-~-~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 60 IFLFT-N-PAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEE-E-HHHHHHHHH-TTEEE
T ss_pred EEEEE-c-HHHHHHHHH-CcCCC
Confidence 34444 2 589999998 99974
No 223
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.76 E-value=90 Score=22.53 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=20.4
Q ss_pred eeEeEEEEEcC-CHHHHHHHHHHhcCCEEe
Q 028083 92 VSVHHVGILCE-NLERSLEFYQNILGLEIN 120 (214)
Q Consensus 92 ~~i~HV~l~V~-D~~~a~~FY~~~LGf~~~ 120 (214)
.+...+.|.+. +-..|.+||++ +||+..
T Consensus 108 ~~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 108 AGAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred cCCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 46666777652 33489999999 999765
Done!