Query 028084
Match_columns 214
No_of_seqs 101 out of 132
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04791 LMBR1: LMBR1-like mem 99.9 7.4E-21 1.6E-25 177.8 17.6 203 3-214 155-398 (471)
2 KOG2296 Integral membrane prot 97.1 0.066 1.4E-06 52.6 18.6 78 125-204 357-434 (673)
3 KOG3722 Lipocalin-interacting 96.4 0.061 1.3E-06 50.8 12.3 185 8-200 198-417 (538)
4 PF04156 IncA: IncA protein; 95.6 0.2 4.4E-06 41.5 10.9 20 27-46 48-67 (191)
5 PF04420 CHD5: CHD5-like prote 93.2 0.27 5.9E-06 40.5 6.1 37 131-169 104-141 (161)
6 COG1422 Predicted membrane pro 91.9 7.5 0.00016 33.5 16.2 45 66-111 76-120 (201)
7 PF12537 DUF3735: Protein of u 89.5 2.8 6.1E-05 29.9 7.5 61 9-73 9-70 (72)
8 KOG2417 Predicted G-protein co 89.0 6.4 0.00014 37.0 11.2 94 10-107 149-267 (462)
9 PF00664 ABC_membrane: ABC tra 87.9 13 0.00028 30.1 14.2 18 8-25 122-139 (275)
10 PF05529 Bap31: B-cell recepto 87.3 8.7 0.00019 32.0 10.2 18 7-24 104-121 (192)
11 PF06667 PspB: Phage shock pro 86.8 5.7 0.00012 29.0 7.6 44 32-76 18-63 (75)
12 PRK10884 SH3 domain-containing 85.5 7.8 0.00017 33.3 9.1 23 88-110 138-160 (206)
13 TIGR02203 MsbA_lipidA lipid A 85.3 14 0.0003 35.4 11.8 24 7-30 134-157 (571)
14 PF03904 DUF334: Domain of unk 84.8 10 0.00022 33.3 9.5 25 161-185 184-208 (230)
15 PF01277 Oleosin: Oleosin; In 84.3 9.3 0.0002 30.3 8.3 59 15-74 55-114 (118)
16 PF00957 Synaptobrevin: Synapt 83.7 14 0.00031 26.8 11.4 25 52-76 11-35 (89)
17 PRK10884 SH3 domain-containing 83.0 15 0.00033 31.6 9.8 27 85-111 142-168 (206)
18 PF07889 DUF1664: Protein of u 82.4 5.7 0.00012 31.7 6.5 55 56-110 69-124 (126)
19 KOG1962 B-cell receptor-associ 81.8 12 0.00027 32.5 8.9 101 8-111 101-208 (216)
20 TIGR02976 phageshock_pspB phag 80.6 8.6 0.00019 28.0 6.4 45 31-76 17-63 (75)
21 PF07586 HXXSHH: Protein of un 80.3 5 0.00011 35.9 6.2 41 66-111 166-206 (302)
22 KOG3088 Secretory carrier memb 79.8 32 0.00069 31.4 11.0 30 92-123 74-103 (313)
23 PF11026 DUF2721: Protein of u 79.3 29 0.00063 27.4 11.0 47 60-111 19-65 (130)
24 PF10112 Halogen_Hydrol: 5-bro 76.9 43 0.00092 28.0 11.8 14 48-61 65-78 (199)
25 PF01956 DUF106: Integral memb 75.9 41 0.00089 27.3 11.8 19 90-108 67-85 (168)
26 PF06936 Selenoprotein_S: Sele 75.7 2.9 6.2E-05 35.7 3.1 36 3-40 22-58 (190)
27 KOG4253 Tryptophan-rich basic 73.4 17 0.00037 30.3 6.9 6 40-45 34-39 (175)
28 PRK13182 racA polar chromosome 72.9 35 0.00077 28.6 9.0 31 85-115 121-151 (175)
29 PF09712 PHA_synth_III_E: Poly 72.5 11 0.00024 34.0 6.3 26 84-109 267-292 (293)
30 PF07439 DUF1515: Protein of u 72.2 45 0.00099 26.1 9.7 55 55-111 8-62 (112)
31 TIGR01834 PHA_synth_III_E poly 71.9 16 0.00034 33.7 7.1 32 83-114 283-314 (320)
32 PF14235 DUF4337: Domain of un 71.2 57 0.0012 26.8 11.3 30 85-114 76-105 (157)
33 PF10226 DUF2216: Uncharacteri 70.1 33 0.0007 29.4 8.1 25 87-111 106-130 (195)
34 KOG0860 Synaptobrevin/VAMP-lik 70.0 53 0.0011 26.0 10.6 22 90-111 58-79 (116)
35 PF04420 CHD5: CHD5-like prote 69.9 8.6 0.00019 31.6 4.6 20 92-111 69-88 (161)
36 PF04120 Iron_permease: Low af 69.7 57 0.0012 26.2 10.8 90 4-107 14-116 (132)
37 PF11241 DUF3043: Protein of u 69.4 67 0.0015 27.0 9.9 14 142-155 104-117 (170)
38 PRK05892 nucleoside diphosphat 68.6 37 0.00081 27.8 8.1 63 48-110 8-75 (158)
39 TIGR02976 phageshock_pspB phag 67.8 15 0.00032 26.8 4.9 34 81-114 34-67 (75)
40 PRK09458 pspB phage shock prot 66.8 43 0.00094 24.5 7.1 52 18-76 10-63 (75)
41 PRK00888 ftsB cell division pr 65.6 59 0.0013 24.9 8.4 13 9-21 5-17 (105)
42 PRK09609 hypothetical protein; 65.2 1.1E+02 0.0025 28.1 12.6 21 91-111 140-160 (312)
43 PF10168 Nup88: Nuclear pore c 64.7 43 0.00092 34.1 9.1 26 85-110 635-660 (717)
44 COG1579 Zn-ribbon protein, pos 64.4 31 0.00068 30.5 7.2 27 85-111 85-111 (239)
45 PRK04654 sec-independent trans 64.4 51 0.0011 28.7 8.3 15 11-25 7-21 (214)
46 PF06476 DUF1090: Protein of u 64.2 36 0.00078 26.6 6.8 16 60-75 72-87 (115)
47 PRK11174 cysteine/glutathione 64.1 1.4E+02 0.0031 28.8 14.2 13 27-39 168-180 (588)
48 TIGR02230 ATPase_gene1 F0F1-AT 63.7 65 0.0014 24.7 8.1 45 142-201 48-92 (100)
49 PF06637 PV-1: PV-1 protein (P 63.1 1.4E+02 0.0031 28.4 12.5 88 5-114 30-118 (442)
50 PF10845 DUF2576: Protein of u 62.6 11 0.00024 24.9 3.1 21 85-105 14-34 (48)
51 PF07851 TMPIT: TMPIT-like pro 62.6 40 0.00087 31.2 7.8 14 131-144 126-139 (330)
52 PRK10573 type IV pilin biogene 62.3 1.3E+02 0.0028 27.7 12.9 52 125-176 162-215 (399)
53 PRK13922 rod shape-determining 61.5 75 0.0016 27.8 9.2 12 100-111 97-108 (276)
54 PRK09458 pspB phage shock prot 61.4 21 0.00046 26.1 4.6 32 81-112 34-65 (75)
55 PF14235 DUF4337: Domain of un 61.0 66 0.0014 26.4 8.2 34 83-116 81-114 (157)
56 PF09753 Use1: Membrane fusion 60.7 1.1E+02 0.0023 26.7 9.9 57 56-112 161-222 (251)
57 TIGR02978 phageshock_pspC phag 60.0 32 0.0007 27.2 5.9 28 89-116 84-111 (121)
58 PRK01026 tetrahydromethanopter 59.7 68 0.0015 23.6 7.4 31 87-117 13-43 (77)
59 PF10498 IFT57: Intra-flagella 59.0 44 0.00095 31.2 7.5 54 53-106 289-352 (359)
60 PF04210 MtrG: Tetrahydrometha 58.6 67 0.0015 23.2 6.9 29 89-117 12-40 (70)
61 PRK10790 putative multidrug tr 58.5 1.4E+02 0.003 28.9 11.3 11 28-38 171-181 (592)
62 TIGR03796 NHPM_micro_ABC1 NHPM 58.5 1.3E+02 0.0027 30.0 11.1 14 27-40 298-311 (710)
63 KOG3312 Predicted membrane pro 58.3 41 0.00088 28.0 6.3 19 51-69 34-52 (186)
64 PTZ00265 multidrug resistance 57.9 2.8E+02 0.0061 30.7 14.3 38 5-42 175-217 (1466)
65 PF03961 DUF342: Protein of un 57.7 64 0.0014 30.5 8.6 25 88-112 381-405 (451)
66 PF06518 DUF1104: Protein of u 57.7 64 0.0014 24.4 6.9 46 48-93 18-70 (93)
67 PF04799 Fzo_mitofusin: fzo-li 57.0 94 0.002 26.2 8.5 26 87-112 142-167 (171)
68 TIGR01193 bacteriocin_ABC ABC- 56.3 1.3E+02 0.0028 29.9 10.9 11 30-40 303-313 (708)
69 PRK06926 flagellar motor prote 56.2 1.5E+02 0.0033 26.5 15.5 54 134-200 160-213 (271)
70 KOG2662 Magnesium transporters 55.6 1.9E+02 0.0042 27.6 12.1 38 134-171 347-387 (414)
71 COG1340 Uncharacterized archae 55.1 50 0.0011 30.1 7.0 60 51-110 37-97 (294)
72 TIGR01461 greB transcription e 55.0 52 0.0011 26.9 6.6 60 48-107 5-70 (156)
73 PF10779 XhlA: Haemolysin XhlA 55.0 72 0.0016 22.4 9.9 14 98-111 36-49 (71)
74 KOG3088 Secretory carrier memb 54.7 19 0.0004 32.9 4.1 18 58-75 74-91 (313)
75 PF14362 DUF4407: Domain of un 53.8 1.6E+02 0.0034 26.1 11.4 26 86-111 139-164 (301)
76 PF11932 DUF3450: Protein of u 53.7 62 0.0013 28.1 7.3 56 56-111 43-99 (251)
77 TIGR02120 GspF general secreti 52.5 1.9E+02 0.0041 26.5 11.5 9 125-133 164-172 (399)
78 PF02388 FemAB: FemAB family; 52.4 73 0.0016 29.8 8.0 54 55-111 242-295 (406)
79 KOG4253 Tryptophan-rich basic 51.7 1.4E+02 0.0031 24.9 8.8 17 60-76 39-55 (175)
80 PF06584 DIRP: DIRP; InterPro 51.5 37 0.0008 26.5 4.9 36 35-75 37-72 (109)
81 PF09798 LCD1: DNA damage chec 50.8 82 0.0018 31.8 8.3 47 51-106 4-50 (654)
82 PF07798 DUF1640: Protein of u 50.6 1.4E+02 0.0031 24.5 10.4 24 124-147 152-175 (177)
83 TIGR01837 PHA_granule_1 poly(h 50.6 35 0.00077 26.6 4.7 24 87-110 94-117 (118)
84 PF08581 Tup_N: Tup N-terminal 50.3 99 0.0021 22.6 7.9 28 86-113 36-63 (79)
85 PF05055 DUF677: Protein of un 49.8 2.1E+02 0.0046 26.5 10.4 18 25-42 211-228 (336)
86 PF08006 DUF1700: Protein of u 49.8 1.4E+02 0.0031 24.3 15.4 26 180-205 146-171 (181)
87 PRK06800 fliH flagellar assemb 49.7 34 0.00073 29.5 4.7 23 56-78 32-54 (228)
88 TIGR02857 CydD thiol reductant 48.4 2.5E+02 0.0053 26.7 13.8 6 30-35 152-157 (529)
89 PF05767 Pox_A14: Poxvirus vir 48.2 21 0.00046 27.0 2.9 23 3-25 47-69 (92)
90 KOG3863 bZIP transcription fac 48.1 40 0.00086 33.6 5.6 46 33-78 485-534 (604)
91 PRK06342 transcription elongat 48.0 52 0.0011 27.1 5.6 56 48-111 31-86 (160)
92 PRK05431 seryl-tRNA synthetase 47.9 1.3E+02 0.0028 28.5 8.9 58 54-111 34-95 (425)
93 PF08278 DnaG_DnaB_bind: DNA p 47.8 71 0.0015 24.3 6.1 28 67-94 99-126 (127)
94 PF04645 DUF603: Protein of un 47.7 1.3E+02 0.0028 25.5 7.7 68 32-110 91-159 (181)
95 KOG2264 Exostosin EXT1L [Signa 47.5 73 0.0016 32.0 7.2 24 87-110 126-149 (907)
96 PF04791 LMBR1: LMBR1-like mem 47.4 27 0.00058 32.8 4.2 23 52-74 200-222 (471)
97 PRK01885 greB transcription el 47.3 1.6E+02 0.0034 24.1 8.3 61 48-108 7-73 (157)
98 PRK13657 cyclic beta-1,2-gluca 47.3 2.7E+02 0.0059 26.9 13.5 9 93-101 220-228 (588)
99 PF15361 RIC3: Resistance to i 47.2 64 0.0014 26.4 5.9 21 87-107 129-149 (152)
100 PF08172 CASP_C: CASP C termin 47.0 72 0.0016 28.2 6.6 47 56-108 80-126 (248)
101 KOG3119 Basic region leucine z 46.7 60 0.0013 28.9 6.2 62 48-111 190-251 (269)
102 PF05615 THOC7: Tho complex su 46.6 44 0.00095 26.3 4.8 49 52-100 78-126 (139)
103 PF11166 DUF2951: Protein of u 46.6 1.3E+02 0.0029 23.0 9.1 16 133-148 75-90 (98)
104 KOG2391 Vacuolar sorting prote 46.2 1.2E+02 0.0025 28.5 8.0 23 54-76 213-235 (365)
105 PHA03048 IMV membrane protein; 46.1 24 0.00051 26.7 2.9 23 3-25 46-68 (93)
106 TIGR00954 3a01203 Peroxysomal 46.0 3.2E+02 0.0068 27.2 15.1 47 56-109 273-319 (659)
107 TIGR01149 mtrG N5-methyltetrah 46.0 1.1E+02 0.0024 22.0 6.8 31 87-117 10-40 (70)
108 PF09574 DUF2374: Protein of 45.7 38 0.00082 22.0 3.4 29 123-151 8-39 (42)
109 KOG0972 Huntingtin interacting 45.7 59 0.0013 30.0 5.9 26 85-110 338-363 (384)
110 PF11239 DUF3040: Protein of u 45.1 1.1E+02 0.0025 22.0 6.4 28 84-114 4-31 (82)
111 PF07851 TMPIT: TMPIT-like pro 44.6 85 0.0018 29.1 6.9 25 174-199 199-223 (330)
112 KOG2629 Peroxisomal membrane a 44.4 1.7E+02 0.0037 26.8 8.6 63 48-110 115-182 (300)
113 PRK10263 DNA translocase FtsK; 44.0 1E+02 0.0022 33.7 8.2 59 129-187 20-88 (1355)
114 PRK01622 OxaA-like protein pre 44.0 1.5E+02 0.0032 26.1 8.1 17 183-199 226-242 (256)
115 TIGR02449 conserved hypothetic 44.0 1.1E+02 0.0025 21.6 6.7 40 59-104 4-43 (65)
116 PF03938 OmpH: Outer membrane 43.9 1.6E+02 0.0034 23.2 9.1 30 82-111 72-102 (158)
117 PF12725 DUF3810: Protein of u 43.7 1.4E+02 0.0031 27.1 8.3 58 9-76 57-116 (318)
118 PF04111 APG6: Autophagy prote 43.5 1.3E+02 0.0029 27.2 8.0 10 133-142 173-182 (314)
119 PRK11546 zraP zinc resistance 43.3 1.6E+02 0.0035 24.0 7.6 56 48-103 44-103 (143)
120 KOG3915 Transcription regulato 42.8 98 0.0021 30.3 7.1 27 50-76 523-549 (641)
121 TIGR03007 pepcterm_ChnLen poly 42.7 2.1E+02 0.0045 27.1 9.5 26 86-111 352-377 (498)
122 PF04156 IncA: IncA protein; 42.6 1.9E+02 0.0041 23.6 10.3 20 90-109 131-150 (191)
123 PF05008 V-SNARE: Vesicle tran 42.5 1.2E+02 0.0025 21.3 7.0 49 58-106 28-78 (79)
124 TIGR02204 MsbA_rel ABC transpo 42.4 3.1E+02 0.0068 26.2 14.9 15 9-23 140-154 (576)
125 PLN02678 seryl-tRNA synthetase 42.0 1.8E+02 0.0039 28.0 8.9 57 55-111 40-100 (448)
126 COG3937 Uncharacterized conser 41.9 1.3E+02 0.0029 23.5 6.5 24 88-111 82-105 (108)
127 PF09006 Surfac_D-trimer: Lung 41.9 35 0.00076 22.7 2.9 22 92-113 2-23 (46)
128 PLN02320 seryl-tRNA synthetase 41.8 1.6E+02 0.0034 28.9 8.6 55 56-110 101-158 (502)
129 PRK11176 lipid transporter ATP 41.5 3.3E+02 0.0071 26.2 13.5 18 8-25 146-163 (582)
130 PF13870 DUF4201: Domain of un 41.3 2E+02 0.0043 23.5 9.1 27 86-112 149-175 (177)
131 PF11917 DUF3435: Protein of u 40.9 98 0.0021 29.0 6.9 14 41-55 270-283 (418)
132 PF05991 NYN_YacP: YacP-like N 40.9 61 0.0013 26.5 5.0 49 48-96 118-166 (166)
133 PF10805 DUF2730: Protein of u 40.7 1.6E+02 0.0035 22.4 8.0 19 58-76 38-56 (106)
134 PF12729 4HB_MCP_1: Four helix 40.2 1.6E+02 0.0035 22.3 8.2 36 81-116 101-136 (181)
135 PF04508 Pox_A_type_inc: Viral 40.2 37 0.00079 19.4 2.4 18 89-106 1-18 (23)
136 COG3883 Uncharacterized protei 39.8 2.5E+02 0.0054 25.3 8.9 52 55-106 45-97 (265)
137 PF10079 DUF2317: Uncharacteri 39.4 2.5E+02 0.0054 27.7 9.6 102 34-139 408-523 (542)
138 PRK13743 conjugal transfer pro 39.3 2.1E+02 0.0045 23.2 9.2 64 129-195 39-106 (141)
139 PF06409 NPIP: Nuclear pore co 39.2 1.7E+02 0.0037 26.1 7.5 31 87-117 153-183 (265)
140 PF04111 APG6: Autophagy prote 39.2 1.9E+02 0.0041 26.3 8.3 14 200-213 188-201 (314)
141 TIGR02132 phaR_Bmeg polyhydrox 38.9 2E+02 0.0044 24.5 7.7 29 83-111 108-136 (189)
142 KOG0345 ATP-dependent RNA heli 38.9 95 0.0021 30.5 6.4 30 25-55 442-477 (567)
143 TIGR01462 greA transcription e 38.8 1.6E+02 0.0035 23.6 7.0 63 48-110 2-70 (151)
144 TIGR00958 3a01208 Conjugate Tr 38.8 4.1E+02 0.009 26.5 17.6 22 8-29 282-303 (711)
145 PRK08307 stage III sporulation 38.8 2.1E+02 0.0045 23.6 7.8 42 91-141 127-168 (171)
146 PF11431 Transport_MerF: Membr 38.6 24 0.00052 23.4 1.7 14 19-32 3-16 (46)
147 PF10359 Fmp27_WPPW: RNA pol I 38.6 1.1E+02 0.0023 29.5 6.9 56 56-111 164-222 (475)
148 PRK10722 hypothetical protein; 38.4 88 0.0019 27.8 5.7 19 90-108 191-209 (247)
149 PF08657 DASH_Spc34: DASH comp 38.3 1.7E+02 0.0037 26.1 7.6 22 88-109 238-259 (259)
150 PF12329 TMF_DNA_bd: TATA elem 38.3 1.5E+02 0.0032 21.2 7.5 18 62-79 12-29 (74)
151 TIGR00414 serS seryl-tRNA synt 38.2 1.8E+02 0.0039 27.5 8.2 55 56-110 38-97 (418)
152 TIGR02833 spore_III_AB stage I 38.1 2.2E+02 0.0047 23.5 7.8 42 91-141 126-167 (170)
153 PF11460 DUF3007: Protein of u 38.0 1.7E+02 0.0037 22.7 6.6 53 13-67 13-78 (104)
154 KOG1029 Endocytic adaptor prot 37.8 1.2E+02 0.0025 31.7 7.1 21 53-73 322-342 (1118)
155 COG4026 Uncharacterized protei 37.8 1.2E+02 0.0025 27.1 6.3 7 72-78 159-165 (290)
156 PF11932 DUF3450: Protein of u 37.5 1.3E+02 0.0029 26.0 6.8 22 57-78 37-58 (251)
157 TIGR01010 BexC_CtrB_KpsE polys 37.2 2.3E+02 0.0049 25.7 8.6 23 87-109 276-298 (362)
158 PHA02898 virion envelope prote 36.9 41 0.00088 25.4 2.9 23 3-25 47-69 (92)
159 PRK06286 putative monovalent c 36.6 46 0.00099 25.2 3.2 32 4-36 3-34 (91)
160 PF03908 Sec20: Sec20; InterP 36.3 1.7E+02 0.0037 21.4 9.8 17 132-148 72-88 (92)
161 PF00664 ABC_membrane: ABC tra 36.2 2.2E+02 0.0048 22.6 10.7 31 7-37 130-160 (275)
162 PF09548 Spore_III_AB: Stage I 36.0 2.3E+02 0.0051 23.1 7.7 41 92-141 127-167 (170)
163 PF13094 CENP-Q: CENP-Q, a CEN 36.0 1.8E+02 0.004 23.3 7.0 63 49-111 21-84 (160)
164 PF11262 Tho2: Transcription f 35.9 1.3E+02 0.0027 27.1 6.6 18 186-203 154-171 (298)
165 PF14728 PHTB1_C: PTHB1 C-term 35.8 3.8E+02 0.0081 25.2 10.7 51 32-84 197-247 (377)
166 KOG0979 Structural maintenance 35.8 1.3E+02 0.0027 32.1 7.1 26 48-77 171-196 (1072)
167 PF05529 Bap31: B-cell recepto 35.7 2.1E+02 0.0045 23.7 7.4 25 86-110 158-182 (192)
168 PF03715 Noc2: Noc2p family; 35.6 1E+02 0.0022 27.9 5.9 63 30-99 223-285 (299)
169 TIGR02894 DNA_bind_RsfA transc 35.4 2.6E+02 0.0057 23.3 8.1 19 90-108 112-130 (161)
170 TIGR02894 DNA_bind_RsfA transc 35.4 2.4E+02 0.0051 23.6 7.5 22 89-110 125-146 (161)
171 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.1 1.5E+02 0.0033 23.1 6.3 28 85-112 62-89 (132)
172 PRK11637 AmiB activator; Provi 34.9 1.5E+02 0.0032 27.8 7.1 15 90-104 234-248 (428)
173 COG4372 Uncharacterized protei 34.7 1.5E+02 0.0033 28.4 6.9 26 88-113 258-283 (499)
174 KOG4050 Glutamate transporter 34.7 1E+02 0.0022 26.0 5.2 37 2-38 105-145 (188)
175 COG2274 SunT ABC-type bacterio 34.6 4E+02 0.0086 27.2 10.4 20 25-44 296-315 (709)
176 PF09744 Jnk-SapK_ap_N: JNK_SA 34.5 2E+02 0.0044 23.7 7.0 23 87-109 87-109 (158)
177 PF11690 DUF3287: Protein of u 34.0 1.7E+02 0.0037 22.8 6.1 22 86-107 60-83 (109)
178 PF10046 BLOC1_2: Biogenesis o 33.7 2E+02 0.0044 21.5 6.6 22 90-111 74-95 (99)
179 KOG0981 DNA topoisomerase I [R 33.4 1.3E+02 0.0029 30.2 6.5 64 54-117 635-704 (759)
180 TIGR03142 cytochro_ccmI cytoch 33.3 2.2E+02 0.0048 21.8 10.0 20 67-86 41-60 (117)
181 KOG1465 Translation initiation 33.3 1.3E+02 0.0029 27.9 6.2 69 25-104 25-94 (353)
182 COG4026 Uncharacterized protei 33.2 2.9E+02 0.0063 24.6 8.0 22 90-111 164-185 (290)
183 PRK10803 tol-pal system protei 33.0 3.4E+02 0.0074 23.9 10.3 22 57-78 46-67 (263)
184 PF03962 Mnd1: Mnd1 family; I 32.9 1.6E+02 0.0035 24.7 6.4 22 89-110 110-131 (188)
185 PF09177 Syntaxin-6_N: Syntaxi 32.8 2E+02 0.0044 21.2 8.2 56 56-111 6-61 (97)
186 PF10828 DUF2570: Protein of u 32.5 2.2E+02 0.0049 21.6 8.3 23 88-110 59-81 (110)
187 KOG0980 Actin-binding protein 32.4 1.1E+02 0.0025 32.0 6.1 14 145-158 598-611 (980)
188 TIGR01069 mutS2 MutS2 family p 32.4 1.3E+02 0.0028 30.9 6.6 12 31-42 493-504 (771)
189 KOG4571 Activating transcripti 32.3 87 0.0019 28.6 4.8 23 88-110 247-269 (294)
190 PF02403 Seryl_tRNA_N: Seryl-t 32.3 2.1E+02 0.0046 21.2 9.2 58 54-111 35-96 (108)
191 PF01405 PsbT: Photosystem II 32.1 87 0.0019 18.8 3.2 20 5-24 3-22 (29)
192 smart00803 TAF TATA box bindin 32.0 1.8E+02 0.0038 20.3 5.6 46 32-78 3-50 (65)
193 PF07106 TBPIP: Tat binding pr 31.9 2.7E+02 0.006 22.4 8.4 26 86-111 113-138 (169)
194 cd07599 BAR_Rvs167p The Bin/Am 31.9 3.1E+02 0.0067 23.0 13.7 60 83-153 143-202 (216)
195 PRK13729 conjugal transfer pil 31.7 1.2E+02 0.0026 29.5 6.0 51 56-106 67-121 (475)
196 PF03962 Mnd1: Mnd1 family; I 31.7 2.8E+02 0.006 23.3 7.6 18 94-111 108-125 (188)
197 TIGR01005 eps_transp_fam exopo 31.6 5.2E+02 0.011 26.0 10.8 20 88-107 375-394 (754)
198 PRK11875 psbT photosystem II r 31.5 73 0.0016 19.4 2.9 20 5-24 3-22 (31)
199 PF07200 Mod_r: Modifier of ru 31.4 1.9E+02 0.004 22.8 6.2 27 90-116 97-123 (150)
200 PF05266 DUF724: Protein of un 31.3 1.8E+02 0.0038 24.7 6.4 21 90-110 160-180 (190)
201 PF02932 Neur_chan_memb: Neuro 31.3 2.4E+02 0.0052 21.6 7.0 23 125-147 215-237 (237)
202 PRK10697 DNA-binding transcrip 31.3 2.5E+02 0.0054 22.1 6.8 71 16-116 38-108 (118)
203 TIGR01194 cyc_pep_trnsptr cycl 31.2 4.9E+02 0.011 25.1 14.2 19 8-26 133-151 (555)
204 KOG4005 Transcription factor X 31.1 87 0.0019 28.0 4.5 60 46-110 48-111 (292)
205 KOG4196 bZIP transcription fac 31.1 1.4E+02 0.0031 24.1 5.3 50 61-110 46-102 (135)
206 KOG0982 Centrosomal protein Nu 31.0 1.8E+02 0.0039 28.2 6.8 51 56-106 216-267 (502)
207 PF13150 DUF3989: Protein of u 31.0 54 0.0012 24.4 2.8 20 180-199 35-54 (85)
208 KOG4538 Predicted coiled-coil 31.0 2.2E+02 0.0047 22.6 6.2 23 56-78 49-71 (130)
209 COG1340 Uncharacterized archae 30.9 2.4E+02 0.0052 25.8 7.4 16 60-75 198-213 (294)
210 PF05546 She9_MDM33: She9 / Md 30.9 2.4E+02 0.0053 24.4 7.1 50 58-110 64-113 (207)
211 PRK11160 cysteine/glutathione 30.8 5E+02 0.011 25.1 14.9 17 8-24 141-157 (574)
212 PF06785 UPF0242: Uncharacteri 30.8 2.6E+02 0.0056 26.3 7.6 17 8-24 44-60 (401)
213 PF11174 DUF2970: Protein of u 30.5 1E+02 0.0022 21.1 3.9 27 125-151 29-55 (56)
214 TIGR00999 8a0102 Membrane Fusi 30.4 2.1E+02 0.0046 24.1 6.9 18 90-107 55-72 (265)
215 PHA02680 ORF090 IMV phosphoryl 30.4 57 0.0012 24.6 2.8 23 3-25 48-70 (91)
216 PRK00106 hypothetical protein; 30.4 2.9E+02 0.0064 27.2 8.5 9 15-23 16-24 (535)
217 KOG3966 p53-mediated apoptosis 30.3 4.4E+02 0.0095 24.3 11.2 15 137-151 140-154 (360)
218 KOG0380 Sterol O-acyltransfera 30.3 4E+02 0.0087 26.3 9.3 92 109-206 294-389 (523)
219 TIGR02978 phageshock_pspC phag 30.3 2.7E+02 0.0059 21.9 7.0 19 86-104 88-106 (121)
220 cd07643 I-BAR_IMD_MIM Inverse 29.7 3.9E+02 0.0084 23.6 8.2 18 52-69 123-140 (231)
221 PRK10789 putative multidrug tr 29.6 5.2E+02 0.011 24.9 13.7 11 29-39 144-154 (569)
222 PRK13729 conjugal transfer pil 29.6 2.4E+02 0.0051 27.5 7.5 23 89-111 97-119 (475)
223 TIGR02808 short_TIGR02808 cons 29.5 79 0.0017 20.5 2.9 29 123-151 8-39 (42)
224 PF05557 MAD: Mitotic checkpoi 29.4 2E+02 0.0042 29.0 7.3 58 59-116 570-633 (722)
225 PLN03086 PRLI-interacting fact 29.4 1.8E+02 0.0039 28.9 6.8 14 104-117 62-75 (567)
226 PF10146 zf-C4H2: Zinc finger- 29.2 2.4E+02 0.0053 24.6 7.0 10 52-61 36-45 (230)
227 KOG4687 Uncharacterized coiled 29.1 2.5E+02 0.0053 25.8 7.1 24 53-76 18-41 (389)
228 PF12999 PRKCSH-like: Glucosid 29.0 3.5E+02 0.0077 22.8 8.2 17 91-107 155-171 (176)
229 PF03449 GreA_GreB_N: Transcri 29.0 2.2E+02 0.0047 20.4 8.5 61 48-110 6-67 (74)
230 PF05384 DegS: Sensor protein 28.9 2.8E+02 0.006 23.0 6.9 25 56-80 35-59 (159)
231 PF06013 WXG100: Proteins of 1 28.8 1.8E+02 0.004 19.4 9.5 29 48-76 4-32 (86)
232 TIGR03752 conj_TIGR03752 integ 28.7 2.1E+02 0.0046 27.8 7.0 21 56-76 67-87 (472)
233 TIGR03375 type_I_sec_LssB type 28.3 5.9E+02 0.013 25.2 11.4 127 4-148 262-388 (694)
234 PF12709 Kinetocho_Slk19: Cent 28.2 2.6E+02 0.0056 21.0 8.3 27 85-111 45-71 (87)
235 PLN00171 photosystem light-ha 28.0 64 0.0014 29.8 3.3 39 29-75 52-91 (324)
236 PF11180 DUF2968: Protein of u 27.9 2.6E+02 0.0057 24.0 6.8 18 87-104 166-183 (192)
237 PRK02201 putative inner membra 27.9 1.7E+02 0.0038 27.3 6.2 39 64-105 162-200 (357)
238 PF02344 Myc-LZ: Myc leucine z 27.8 1.5E+02 0.0032 18.2 3.8 24 54-77 7-30 (32)
239 PF14723 SSFA2_C: Sperm-specif 27.7 3.8E+02 0.0082 22.7 8.4 45 52-96 106-152 (179)
240 smart00787 Spc7 Spc7 kinetocho 27.7 1.5E+02 0.0033 27.0 5.7 20 49-68 202-221 (312)
241 PF14182 YgaB: YgaB-like prote 27.4 1.9E+02 0.0042 21.3 5.1 29 87-115 38-66 (79)
242 KOG4136 Predicted mitochondria 27.4 1.9E+02 0.004 24.8 5.7 14 180-193 68-81 (198)
243 KOG4797 Transcriptional regula 27.3 1E+02 0.0023 24.2 3.9 26 86-111 64-89 (123)
244 PF14159 CAAD: CAAD domains of 27.2 1.1E+02 0.0024 22.8 3.9 36 129-165 17-52 (90)
245 PLN02777 photosystem I P subun 27.2 1.8E+02 0.004 24.4 5.5 32 136-167 98-129 (167)
246 CHL00031 psbT photosystem II p 27.1 78 0.0017 19.6 2.5 20 5-24 3-22 (33)
247 PF09403 FadA: Adhesion protei 26.9 2.4E+02 0.0052 22.5 6.0 21 90-110 60-80 (126)
248 PF07058 Myosin_HC-like: Myosi 26.9 1.6E+02 0.0036 27.2 5.6 27 85-111 62-88 (351)
249 TIGR02868 CydC thiol reductant 26.8 5.5E+02 0.012 24.3 15.9 19 57-75 189-207 (529)
250 PF07889 DUF1664: Protein of u 26.8 3E+02 0.0064 21.9 6.5 23 87-109 87-109 (126)
251 TIGR01554 major_cap_HK97 phage 26.8 1.9E+02 0.0041 26.4 6.3 24 87-110 39-62 (378)
252 PF01616 Orbi_NS3: Orbivirus N 26.7 4.1E+02 0.0089 22.8 11.6 70 28-108 21-93 (195)
253 KOG4403 Cell surface glycoprot 26.3 2.9E+02 0.0064 26.9 7.4 22 56-77 250-271 (575)
254 KOG4196 bZIP transcription fac 26.3 2.1E+02 0.0044 23.2 5.5 20 90-109 96-115 (135)
255 PF14257 DUF4349: Domain of un 26.2 4.3E+02 0.0093 22.8 12.9 64 48-111 125-191 (262)
256 KOG3990 Uncharacterized conser 26.1 2.3E+02 0.0049 25.7 6.2 56 56-111 237-296 (305)
257 PRK11546 zraP zinc resistance 25.9 3.7E+02 0.0079 21.9 7.0 48 66-113 69-122 (143)
258 TIGR03752 conj_TIGR03752 integ 25.9 3E+02 0.0065 26.8 7.5 17 60-76 78-94 (472)
259 PF13906 AA_permease_C: C-term 25.9 1.2E+02 0.0026 20.3 3.5 27 5-31 16-42 (51)
260 PF09726 Macoilin: Transmembra 25.8 2E+02 0.0043 29.3 6.6 22 90-111 588-609 (697)
261 smart00806 AIP3 Actin interact 25.8 4.1E+02 0.0088 25.6 8.2 54 56-112 211-273 (426)
262 smart00503 SynN Syntaxin N-ter 25.7 2.7E+02 0.0059 20.4 7.6 61 54-114 49-114 (117)
263 KOG2911 Uncharacterized conser 25.6 1.7E+02 0.0038 28.1 5.8 28 53-80 238-265 (439)
264 KOG2881 Predicted membrane pro 25.6 1.8E+02 0.0039 26.4 5.6 11 51-61 161-171 (294)
265 PF08285 DPM3: Dolichol-phosph 25.6 1.3E+02 0.0028 22.6 4.0 24 15-38 39-62 (91)
266 PF10669 Phage_Gp23: Protein g 25.6 3.2E+02 0.007 21.2 7.3 12 28-39 23-34 (121)
267 PRK13698 plasmid-partitioning 25.2 2.3E+02 0.005 26.2 6.4 52 25-78 195-246 (323)
268 KOG4460 Nuclear pore complex, 25.2 2.5E+02 0.0053 28.3 6.8 26 86-111 659-684 (741)
269 KOG4343 bZIP transcription fac 25.2 1.3E+02 0.0028 29.9 4.9 50 61-111 274-338 (655)
270 PF15007 CEP44: Centrosomal sp 25.2 2.2E+02 0.0047 22.9 5.5 38 37-76 78-121 (131)
271 TIGR00219 mreC rod shape-deter 25.1 4.1E+02 0.0089 23.7 7.9 11 101-111 96-106 (283)
272 COG1792 MreC Cell shape-determ 24.7 3.1E+02 0.0068 24.5 7.1 29 87-115 81-109 (284)
273 PF12325 TMF_TATA_bd: TATA ele 24.5 3.5E+02 0.0076 21.2 7.3 28 87-114 66-93 (120)
274 PF00804 Syntaxin: Syntaxin; 24.4 2.6E+02 0.0056 19.7 6.4 54 51-104 3-60 (103)
275 cd07588 BAR_Amphiphysin The Bi 24.3 3.4E+02 0.0074 23.3 7.0 21 87-107 137-157 (211)
276 smart00055 FCH Fes/CIP4 homolo 24.3 2.6E+02 0.0055 19.6 6.8 16 87-102 66-81 (87)
277 PLN02764 glycosyltransferase f 24.2 2.2E+02 0.0047 27.3 6.3 53 48-103 392-448 (453)
278 PRK00226 greA transcription el 23.9 3.8E+02 0.0083 21.5 7.0 63 48-110 7-75 (157)
279 COG2825 HlpA Outer membrane pr 23.9 3.9E+02 0.0085 22.1 7.1 18 59-76 52-69 (170)
280 PRK10780 periplasmic chaperone 23.8 3.9E+02 0.0085 21.5 9.8 9 81-89 78-86 (165)
281 PF05979 DUF896: Bacterial pro 23.7 1.7E+02 0.0037 20.7 4.1 33 66-98 2-34 (65)
282 TIGR01541 tape_meas_lam_C phag 23.6 5.4E+02 0.012 23.6 8.5 18 94-111 128-145 (332)
283 PF04787 Pox_H7: Late protein 23.6 4.2E+02 0.0091 21.8 8.9 75 38-116 59-138 (147)
284 PF09789 DUF2353: Uncharacteri 23.5 4.9E+02 0.011 24.0 8.2 26 53-78 21-46 (319)
285 COG1938 Archaeal enzymes of AT 23.4 1.7E+02 0.0036 26.0 4.9 28 48-75 204-231 (244)
286 PF04281 Tom22: Mitochondrial 23.3 4E+02 0.0087 21.5 6.8 30 8-37 82-111 (137)
287 PRK02463 OxaA-like protein pre 23.3 4.4E+02 0.0096 24.0 7.9 17 183-199 226-242 (307)
288 PRK11637 AmiB activator; Provi 23.2 3.2E+02 0.007 25.5 7.2 11 97-107 234-244 (428)
289 PHA01815 hypothetical protein 23.2 95 0.002 20.8 2.5 24 2-25 28-51 (55)
290 PF10205 KLRAQ: Predicted coil 23.1 3.6E+02 0.0078 20.8 7.2 27 85-111 43-69 (102)
291 KOG0500 Cyclic nucleotide-gate 23.1 2E+02 0.0043 28.3 5.7 23 94-116 466-488 (536)
292 COG2941 CAT5 Ubiquinone biosyn 23.1 2E+02 0.0044 24.8 5.2 104 39-148 20-128 (204)
293 PF11464 Rbsn: Rabenosyn Rab b 23.0 2.2E+02 0.0048 18.5 4.9 17 90-106 23-39 (42)
294 PF03245 Phage_lysis: Bacterio 23.0 3.6E+02 0.0078 21.1 6.4 24 83-106 36-59 (125)
295 PF11014 DUF2852: Protein of u 23.0 3.8E+02 0.0082 21.1 9.1 19 20-38 18-36 (115)
296 PF15136 UPF0449: Uncharacteri 23.0 1.8E+02 0.0039 22.3 4.4 44 56-105 51-94 (97)
297 COG1291 MotA Flagellar motor c 23.0 5.6E+02 0.012 23.1 11.4 78 94-197 129-206 (266)
298 PRK11176 lipid transporter ATP 22.9 6.8E+02 0.015 24.0 18.9 8 12-19 159-166 (582)
299 PF14333 DUF4389: Domain of un 22.8 2.2E+02 0.0048 20.5 4.8 45 130-174 17-61 (80)
300 PF02183 HALZ: Homeobox associ 22.8 2.3E+02 0.0049 18.4 5.5 17 60-76 3-19 (45)
301 KOG1103 Predicted coiled-coil 22.8 3.1E+02 0.0068 26.0 6.8 26 86-111 270-295 (561)
302 PF07332 DUF1469: Protein of u 22.7 1.3E+02 0.0029 22.7 3.8 17 53-69 104-120 (121)
303 PF07798 DUF1640: Protein of u 22.7 4.3E+02 0.0094 21.6 7.9 15 131-145 155-169 (177)
304 KOG2129 Uncharacterized conser 22.6 5.7E+02 0.012 24.9 8.5 52 60-111 206-275 (552)
305 PLN03223 Polycystin cation cha 22.6 1.8E+02 0.0038 32.3 5.6 58 54-111 1543-1600(1634)
306 cd00179 SynN Syntaxin N-termin 22.5 3.7E+02 0.008 20.8 8.1 62 53-114 46-113 (151)
307 PF02238 COX7a: Cytochrome c o 22.4 1.5E+02 0.0034 20.3 3.6 27 6-33 28-54 (56)
308 PF14523 Syntaxin_2: Syntaxin- 22.3 3.1E+02 0.0067 19.8 6.8 30 85-114 67-96 (102)
309 PRK00409 recombination and DNA 22.1 2.4E+02 0.0051 29.0 6.4 13 30-42 497-509 (782)
310 PRK00106 hypothetical protein; 21.9 5E+02 0.011 25.7 8.3 8 13-20 10-17 (535)
311 PF09726 Macoilin: Transmembra 21.8 4.2E+02 0.009 27.1 8.0 22 90-111 553-574 (697)
312 PTZ00454 26S protease regulato 21.8 3.6E+02 0.0078 25.3 7.2 21 89-109 43-63 (398)
313 PF06156 DUF972: Protein of un 21.8 3.8E+02 0.0082 20.6 6.9 17 86-102 40-56 (107)
314 PRK09413 IS2 repressor TnpA; R 21.7 1.7E+02 0.0037 22.4 4.3 25 87-111 76-100 (121)
315 TIGR01554 major_cap_HK97 phage 21.4 2.9E+02 0.0062 25.2 6.4 12 165-176 125-136 (378)
316 PRK01631 hypothetical protein; 21.4 2.1E+02 0.0045 21.0 4.3 36 66-101 3-38 (76)
317 PF07028 DUF1319: Protein of u 21.4 4E+02 0.0086 21.4 6.2 54 56-113 31-84 (126)
318 KOG0980 Actin-binding protein 21.4 3.6E+02 0.0079 28.5 7.4 24 87-110 492-515 (980)
319 KOG4657 Uncharacterized conser 21.3 4.8E+02 0.01 23.1 7.2 21 90-110 94-114 (246)
320 PLN03192 Voltage-dependent pot 21.3 5.1E+02 0.011 26.4 8.6 33 8-40 257-302 (823)
321 KOG2315 Predicted translation 21.1 1.9E+02 0.0042 28.6 5.3 43 59-103 515-560 (566)
322 PF01166 TSC22: TSC-22/dip/bun 20.7 1.2E+02 0.0026 21.2 2.8 25 87-111 12-36 (59)
323 PF09851 SHOCT: Short C-termin 20.7 95 0.0021 18.4 2.0 13 48-60 17-29 (31)
324 KOG0810 SNARE protein Syntaxin 20.7 4.4E+02 0.0095 24.0 7.2 22 54-75 74-95 (297)
325 PF04880 NUDE_C: NUDE protein, 20.7 1.8E+02 0.0038 24.3 4.3 37 66-105 11-47 (166)
326 PF10458 Val_tRNA-synt_C: Valy 20.6 2.9E+02 0.0064 18.9 7.6 54 55-108 4-65 (66)
327 KOG1419 Voltage-gated K+ chann 20.5 3.9E+02 0.0085 26.9 7.2 62 51-112 522-592 (654)
328 PRK12705 hypothetical protein; 20.5 8.2E+02 0.018 24.0 10.8 16 8-23 6-21 (508)
329 COG2981 CysZ Uncharacterized p 20.5 5.3E+02 0.012 23.0 7.4 49 147-199 46-95 (250)
330 PF13942 Lipoprotein_20: YfhG 20.5 3.6E+02 0.0078 22.9 6.1 15 95-109 150-164 (179)
331 PRK15365 type III secretion sy 20.4 4.1E+02 0.0089 20.5 6.1 19 56-74 17-35 (107)
332 PF05915 DUF872: Eukaryotic pr 20.4 1.9E+02 0.0042 22.5 4.3 25 125-149 43-67 (115)
333 COG2348 Peptidoglycan interpep 20.4 3.8E+02 0.0083 25.7 7.0 47 60-106 251-297 (418)
334 PLN02208 glycosyltransferase f 20.4 3.5E+02 0.0075 25.7 6.8 14 21-34 344-357 (442)
335 PF13864 Enkurin: Calmodulin-b 20.3 3.7E+02 0.0079 19.9 7.1 27 85-111 70-96 (98)
336 COG1459 PulF Type II secretory 20.3 7.3E+02 0.016 23.4 13.5 46 125-176 161-214 (397)
337 PF10457 MENTAL: Cholesterol-c 20.3 1.3E+02 0.0027 25.4 3.4 63 129-194 5-67 (171)
338 KOG1962 B-cell receptor-associ 20.2 4.7E+02 0.01 22.8 7.0 9 68-76 133-141 (216)
339 PRK05431 seryl-tRNA synthetase 20.1 3.4E+02 0.0073 25.7 6.6 22 87-108 78-99 (425)
340 PF07047 OPA3: Optic atrophy 3 20.1 1.7E+02 0.0036 23.2 4.0 27 85-111 101-127 (134)
341 KOG3433 Protein involved in me 20.1 3.9E+02 0.0085 23.0 6.3 56 56-111 86-145 (203)
342 PF07074 TRAP-gamma: Transloco 20.0 5.4E+02 0.012 21.7 7.6 21 91-111 99-119 (170)
No 1
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=99.86 E-value=7.4e-21 Score=177.82 Aligned_cols=203 Identities=25% Similarity=0.404 Sum_probs=130.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHH------------
Q 028084 3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA------------ 70 (214)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~------------ 70 (214)
.++..|++|+.++.|++++++|+|+||+++|.|+++.+.+..+..-..++..+.+.++++..+++.+.
T Consensus 155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 234 (471)
T PF04791_consen 155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 46789999999999999999999999999999999999871111011111122222222222222211
Q ss_pred ---------HHHHHhhh-------ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc------------chhh
Q 028084 71 ---------ADTLHQEE-------RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA------------ETSW 122 (214)
Q Consensus 71 ---------~~~l~~~~-------~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~------------~~~~ 122 (214)
.+++++.. ++.+.+++.++..+..++.+..++++.+.+++.+++..+. ...|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
T PF04791_consen 235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW 314 (471)
T ss_pred HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence 11111100 0011112222222333333333333333333332221111 1123
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHh
Q 028084 123 AL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML 201 (214)
Q Consensus 123 ~~-~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~~ 201 (214)
.| ..+.++++.++|+++.++|++|+.|-+.....+ ++|.+++..++.++.++.++.+++++|+.+||.+|++++
T Consensus 315 ~~~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~ 389 (471)
T PF04791_consen 315 IWYCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKL 389 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 34 556677999999999999999999999776655 899999999999888899999999999999999999999
Q ss_pred hhhhhheecccCC
Q 028084 202 GLRLVFITIHPMK 214 (214)
Q Consensus 202 GiRf~~i~i~pmk 214 (214)
|+ +++|||+
T Consensus 390 ~~----f~~y~l~ 398 (471)
T PF04791_consen 390 KI----FRFYPLV 398 (471)
T ss_pred hh----heecccc
Confidence 97 8888875
No 2
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=97.10 E-value=0.066 Score=52.59 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 028084 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLR 204 (214)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~~GiR 204 (214)
.-+..+++.+++++-.+.|.+++++=.-....++...++.+-+....++..=. ++.-.++..|++.|+-+-.++++++
T Consensus 357 ~~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~i--~~~af~~l~Y~~~ctY~sl~r~~~~ 434 (673)
T KOG2296|consen 357 CILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELTV--QFVAFVPLVYMCYCTYYSLFRIQFL 434 (673)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999998888767777877888889888888865443 5566778889999999999999988
No 3
>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]
Probab=96.42 E-value=0.061 Score=50.81 Aligned_cols=185 Identities=21% Similarity=0.347 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHH-H-HHH---HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 028084 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRS-Q-YIK---EATELGKKARELKKAADTLHQEERSGS 82 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~-~-~~~---~~~~l~~~~~~l~e~~~~l~~~~~~~~ 82 (214)
|+-+|.+++|..+..+.|-+|++-+ .+.-..+.-||+. .++- | +.. +....+++...-.+.+--+.+..+.|.
T Consensus 198 ~lYSCvSflg~~lllicTp~g~~rm-f~v~~~~lvkp~~-l~d~~e~~~~~~~ee~s~~r~l~~~~~~~~~i~ds~~~~~ 275 (538)
T KOG3722|consen 198 YLYSCVSFLGVLLLLICTPYGFARM-FSVAGQLLVKPKL-LEDLTEQVYASGIEEASLERRLLNTDDEEMGINDSGDDGD 275 (538)
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHH-HHHhhhheechhH-HHHHHHhhhhhhcchHHHHHHHhcccchhcccccccccCC
Confidence 7789999999999999999998765 3445555556764 2211 1 000 111111111111111111111111111
Q ss_pred cC-----------------hHhHH----------HHHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHH
Q 028084 83 KG-----------------RKWRK----------NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVL 135 (214)
Q Consensus 83 ~s-----------------~k~rr----------~l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~ 135 (214)
.+ +|+.+ .++.+++++++++.+-..+++. +... .|- .-+.+|...++
T Consensus 276 l~n~~~l~~~~~~~~~pl~~~~~~~l~~~k~~~~d~~~l~~~~~e~~~qr~~l~~r--rt~S---a~e-RnlvyP~am~l 349 (538)
T KOG3722|consen 276 LGNSTPLKNKKKRRTTPIVRKWDKDVPKKKNPNFDYRELKEYVKELRTQRSSLEKR--RTAS---AWE-RNLVYPLAMLL 349 (538)
T ss_pred cccccccccccccCCChhHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhh--hhhH---HHH-HhhhhHHHHHH
Confidence 11 11111 3444555555555555555553 1111 121 46777899988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 028084 136 GILGFIVSVAWVAHIVIYLLINPPLHPFLNEV---FIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMM 200 (214)
Q Consensus 136 Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~---f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~ 200 (214)
=.++.-+|++.++.=++..+.+.-.-|---.- =+..=+.|.++|..+=.++++|++.+|++|--.
T Consensus 350 LLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~ig~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYS 417 (538)
T KOG3722|consen 350 LLVLTTCSVLLVATNTLELLIGERALPVYTQGFAIGVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYS 417 (538)
T ss_pred HHHHhhhHHHHHHHhHHHHHhCcccCccccccccccceehhhccchHHHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999999888888774222222111 122224577789999999999999999999543
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.60 E-value=0.2 Score=41.51 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHhhcccCCCc
Q 028084 27 VGIACLPLGLIFSFIRRPKA 46 (214)
Q Consensus 27 vGlaaLPi~lI~~f~~Rpk~ 46 (214)
+|++.++.++..-...+|.+
T Consensus 48 lg~vL~~~g~~~~~~~~~~~ 67 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKRPVQ 67 (191)
T ss_pred HHHHHHHHHHHHHHHccccc
Confidence 46666777777666677765
No 5
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=93.16 E-value=0.27 Score=40.46 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ChhHHHHH
Q 028084 131 AKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVFI 169 (214)
Q Consensus 131 ~kLl~Gii~lllSl~w~i~iil~~i~k~~~~-~fLN~~f~ 169 (214)
..++.+....++ ..|.=.--++.+++. .+ .|+++++-
T Consensus 104 ~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lLS 141 (161)
T PF04420_consen 104 LWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLLS 141 (161)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhee
Confidence 333444333333 334445455566642 33 56666654
No 6
>COG1422 Predicted membrane protein [Function unknown]
Probab=91.92 E-value=7.5 Score=33.46 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.++.++.|++.++.++ ++|-.++++++++..+.-+|++++-..
T Consensus 76 ~~qk~m~efq~e~~eA~~-~~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 76 ELQKMMKEFQKEFREAQE-SGDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444332222 356779999999999999999888776
No 7
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=89.52 E-value=2.8 Score=29.94 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 9 VVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVIT-RSQYIKEATELGKKARELKKAADT 73 (214)
Q Consensus 9 ~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is-~~~~~~~~~~l~~~~~~l~e~~~~ 73 (214)
++.=++.+|..+-.+-.|+|=+..|..-+.-|.+ | .+ ..+.+....++..-.+.+.++.++
T Consensus 9 ~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~-~---v~~~~~i~~~~~~l~~t~~~l~~Kk~~ 70 (72)
T PF12537_consen 9 VLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRR-P---VSRESDINNAERRLWHTRDMLVEKKKR 70 (72)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHh-c---CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999996655 3 45 444444444444333344444333
No 8
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=89.03 E-value=6.4 Score=37.00 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhc
Q 028084 10 VALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA----------ADTLHQEER 79 (214)
Q Consensus 10 i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~----------~~~l~~~~~ 79 (214)
++=...+|.-+-++-.|-|-+-.|.+.+.-|.+ | ++..+..+...++..-.|-.+.+ .+++++++.
T Consensus 149 iSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR-~---Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~~e~~ 224 (462)
T KOG2417|consen 149 ISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIR-P---VEETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQSEKV 224 (462)
T ss_pred HhhhhhhhhhHHHHHhccCccCCchhhhhhhhc-c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 444567888999999999999999999988865 5 66665544333332222222111 122222222
Q ss_pred cCCcC---------------hHhHHHHHHHHHHHHHHHHHHHH
Q 028084 80 SGSKG---------------RKWRKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 80 ~~~~s---------------~k~rr~l~~l~~~~~~Le~~~~~ 107 (214)
+.+.| ..-..+++.+++|+..||+=.|.
T Consensus 225 ~k~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEeLsrq 267 (462)
T KOG2417|consen 225 QKEPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEELSRQ 267 (462)
T ss_pred ccCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 22221 11234788999999999987665
No 9
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=87.93 E-value=13 Score=30.06 Aligned_cols=18 Identities=17% Similarity=0.336 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028084 8 YVVALATIVGSVLFSIFG 25 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~ 25 (214)
.+.++.++++.+.++++.
T Consensus 122 ~~~~~~~~i~~~~~~~~~ 139 (275)
T PF00664_consen 122 IISSIISIIFSLILLFFI 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhccccc
Confidence 334444455555444443
No 10
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.26 E-value=8.7 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028084 7 EYVVALATIVGSVLFSIF 24 (214)
Q Consensus 7 ~f~i~~l~~iG~~lfi~y 24 (214)
.|+.|+..++++++.-++
T Consensus 104 ~YIsGf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 104 MYISGFALFLSLVIRRVH 121 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 588888888888877665
No 11
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=86.80 E-value=5.7 Score=28.99 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=21.7
Q ss_pred hhHHHHhhcccCCCc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 32 LPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 32 LPi~lI~~f~~Rpk~--~is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.|+-|+.-|++|.|. -.|.++ .+.-.++.++++++.|+-+.||+
T Consensus 18 ap~WL~lHY~sk~~~~~gLs~~d-~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 18 APIWLILHYRSKWKSSQGLSEED-EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889888775532 022222 11223444444455554444443
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.48 E-value=7.8 Score=33.33 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+++.++++++...+..+.+.++.
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 13
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=85.32 E-value=14 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 028084 7 EYVVALATIVGSVLFSIFGGVGIA 30 (214)
Q Consensus 7 ~f~i~~l~~iG~~lfi~y~gvGla 30 (214)
.++..+.++++.+.+++|-+..++
T Consensus 134 ~~i~~~~~~~~~~~~l~~~~~~l~ 157 (571)
T TIGR02203 134 VLVRETLTVIGLFIVLLYYSWQLT 157 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555555555555443
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.82 E-value=10 Score=33.31 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=13.8
Q ss_pred CChhHHHHHHhhhhhhHHHHHHHHH
Q 028084 161 HPFLNEVFIKLDDLWGLLGTAAFAF 185 (214)
Q Consensus 161 ~~fLN~~f~~l~~~fpll~~i~~~~ 185 (214)
..++|...-...+.+..+=|+.|++
T Consensus 184 y~~ia~~ik~se~~~~~lwyi~Y~v 208 (230)
T PF03904_consen 184 YKAIASKIKASESFWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHhh
Confidence 3455665555555566555555543
No 15
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=84.29 E-value=9.3 Score=30.26 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhhhhhhh-HHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 15 IVGSVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL 74 (214)
Q Consensus 15 ~iG~~lfi~y~gvGlaaLP-i~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l 74 (214)
.+-.--|..-|+.|++++- ++++..+.++.+| -..+|..+.|.++.+.++++.|+.|+.
T Consensus 55 ~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~ 114 (118)
T PF01277_consen 55 GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV 114 (118)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345555666666554 4677777777777 778888888888988888888777764
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=83.73 E-value=14 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..+.+....+-.++++|+|+.|+.
T Consensus 11 ~v~~v~~im~~Ni~~ll~Rge~L~~ 35 (89)
T PF00957_consen 11 QVEEVKNIMRENIDKLLERGEKLEE 35 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4455666666666777777777765
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.98 E-value=15 Score=31.58 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=16.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++-++++..++.+.+.|+.+.+.++..
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666655553
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.36 E-value=5.7 Score=31.73 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+-..++.+.++..|.+++++++-.+-+ --..-+.+++.+++.++.||.+...+|.
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445555566666666665433222 1234566788888888888888777765
No 19
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.83 E-value=12 Score=32.50 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHH------HhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028084 8 YVVALATIVGSVLFSIFGGVGIACLPLGL------IFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG 81 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~gvGlaaLPi~l------I~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~ 81 (214)
|+-|+..|++.++=-+++-+.-.+-=-+. ..+. +++. -+.+.+.++.+...++.+.+++.-+.-+.+-+..
T Consensus 101 YisGf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~l--k~~~-~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~ 177 (216)
T KOG1962|consen 101 YISGFVLFLSLVIRRLHTLLRELATLRANEKAMKENEAL--KKQL-ENSSKLEEENDKLKADLEKLETELEKKQKKLEKA 177 (216)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHhh-hcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777777765554442 1111 1111 3333344445555555555555554444432211
Q ss_pred C-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 82 S-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 82 ~-~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
. ..-.-++..+.+++|-..|-+|+.++++.
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 1 11223445555666666666666666555
No 20
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=80.65 E-value=8.6 Score=28.01 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=28.7
Q ss_pred hhhHHHHhhcccCCCcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 31 CLPLGLIFSFIRRPKAV--ITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 31 aLPi~lI~~f~~Rpk~~--is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
..|+-|+.-|.++.+.. .|.++ .+.-+++.++++++.|+-+.||+
T Consensus 17 Vap~wl~lHY~~k~~~~~~ls~~d-~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 17 VAPLWLILHYRSKRKTAASLSTDD-QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999998876531 22222 22445666677777777777765
No 21
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=80.27 E-value=5 Score=35.87 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
-+.|..+.++ .+.+..||.+++.+-..+|++|++.+..+..
T Consensus 166 ~v~~d~~~L~-----~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~ 206 (302)
T PF07586_consen 166 LVREDAKSLR-----RRLGAEDRQKLDQYLDSIREIEKRLQQAEAW 206 (302)
T ss_pred HHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444444443 5578899999999999999999999777755
No 22
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.80 E-value=32 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccchhhh
Q 028084 92 KSVEKELLQLEEDVKLLEEMYPQGEKAETSWA 123 (214)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~ 123 (214)
++|+|++.+|+||+|.++.. ..-.++++|.
T Consensus 74 eEL~Rke~ELdRREr~~a~~--g~~~~~nNWP 103 (313)
T KOG3088|consen 74 EELRRKEQELDRRERALARA--GIVIRENNWP 103 (313)
T ss_pred HHHHHHHHHHhHHHHHHhhc--cCcccccCCC
Confidence 34555667777777777774 2222455666
No 23
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=79.32 E-value=29 Score=27.39 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 60 LGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
...|-....++.|+++++.++.. +.+ ++ +.++|.+.|++|-+.+..+
T Consensus 19 ~tnRl~ri~dR~R~L~~~~~~~~-~~~-~~---~~~~el~~L~rR~~li~~a 65 (130)
T PF11026_consen 19 LTNRLARIVDRIRQLHDELRDAP-DEE-ER---RLRRELRILRRRARLIRRA 65 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-cch-hh---hHHHHHHHHHHHHHHHHHH
Confidence 34444466777777776654321 111 11 1278888899988888877
No 24
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=76.92 E-value=43 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=7.2
Q ss_pred cCHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELG 61 (214)
Q Consensus 48 is~~~~~~~~~~l~ 61 (214)
+|..|+...+..++
T Consensus 65 ls~~e~~~~~~~l~ 78 (199)
T PF10112_consen 65 LSDREYEYIREILE 78 (199)
T ss_pred CChhHHHHHHHHHH
Confidence 45555554444444
No 25
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=75.89 E-value=41 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~l 108 (214)
..++++++...+.+++...
T Consensus 67 ~~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 67 KPKKLEKRQMELMEKQQEM 85 (168)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444
No 26
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=75.67 E-value=2.9 Score=35.66 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=1.4
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHHhhc
Q 028084 3 TTFPEYVVA-LATIVGSVLFSIFGGVGIACLPLGLIFSF 40 (214)
Q Consensus 3 vsf~~f~i~-~l~~iG~~lfi~y~gvGlaaLPi~lI~~f 40 (214)
++++...++ ++.--||.+. ++.+++..+=--+...+
T Consensus 22 ~~~l~~tv~~~L~~yGWyil--~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 22 LSFLQSTVGSFLSSYGWYIL--FGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHH
Confidence 456666666 8999999654 77777765544444444
No 27
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=73.35 E-value=17 Score=30.34 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.9
Q ss_pred cccCCC
Q 028084 40 FIRRPK 45 (214)
Q Consensus 40 f~~Rpk 45 (214)
|.+||.
T Consensus 34 ~~s~~~ 39 (175)
T KOG4253|consen 34 FMSRVG 39 (175)
T ss_pred hhhccc
Confidence 445553
No 28
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=72.91 E-value=35 Score=28.57 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQG 115 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~ 115 (214)
=++|||++.+...+..||.+..++|..+...
T Consensus 121 l~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4799999999999999999999988876555
No 29
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=72.52 E-value=11 Score=33.98 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.2
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHH
Q 028084 84 GRKWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 84 s~k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
+-=.|++++.+.+++++|+|+.+.++
T Consensus 267 ~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 267 NLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34477899999999999999999875
No 30
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=72.15 E-value=45 Score=26.11 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.-..++++.++++|--++=|. ++...-.+.-|+++.+.+++..||...+.+++.
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEd--rsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSED--RSAASRASMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666666553332 222222356688999999999999998888776
No 31
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=71.95 E-value=16 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++--.|++++.+.+.+++|||+.+.|+....+
T Consensus 283 LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 283 LNLPTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447789999999999999999988876433
No 32
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=71.18 E-value=57 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=18.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
.+++++.+++++|-.+||++-+..|..+.+
T Consensus 76 ~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 76 ARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456666666666666666666666555333
No 33
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.13 E-value=33 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.|+++..+.++...||.+++.+...
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999998887665
No 34
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.99 E-value=53 Score=25.97 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028084 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++.|+++-..|+.-...++..
T Consensus 58 kL~~L~drad~L~~~as~F~~~ 79 (116)
T KOG0860|consen 58 KLDELDDRADQLQAGASQFEKT 79 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 35
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=69.88 E-value=8.6 Score=31.56 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028084 92 KSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~ 111 (214)
-+++|+...+++|.+.++++
T Consensus 69 aKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555
No 36
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=69.68 E-value=57 Score=26.24 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHHHHHHH------------HHhhhhhhhhhHHH-HhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 028084 4 TFPEYVVALATIVGSVLFS------------IFGGVGIACLPLGL-IFSFIRRPKAVITRSQYIKEATELGKKARELKKA 70 (214)
Q Consensus 4 sf~~f~i~~l~~iG~~lfi------------~y~gvGlaaLPi~l-I~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~ 70 (214)
|+..|++++...+||+..- +.|+.+++.+=+-+ |+..-+ .+ ...+..|.+++++.
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~-----------Rd-~~al~~KLdeLi~~ 81 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQN-----------RD-TKALQAKLDELIRA 81 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHHH
Confidence 6788999999999998874 34555555443333 333222 22 22455555555555
Q ss_pred HHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHH
Q 028084 71 ADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 71 ~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~ 107 (214)
.+.-+++- -.....+-+|+++++++.+++.++.+.
T Consensus 82 ~~~a~n~l--i~iE~l~~~el~~~~~~~~~~~~~~~~ 116 (132)
T PF04120_consen 82 VKEARNEL--IDIEDLTEEELEEIRKRYERLAEQARE 116 (132)
T ss_pred HHHHHHHh--CCcccCCHHHHHHHHHHHHHHHHHhhh
Confidence 44333221 111123445666666666665555444
No 37
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=69.40 E-value=67 Score=26.96 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHh
Q 028084 142 VSVAWVAHIVIYLL 155 (214)
Q Consensus 142 lSl~w~i~iil~~i 155 (214)
++++|++-+++.++
T Consensus 104 ~~~~~~~~~~~~ii 117 (170)
T PF11241_consen 104 VTLAMYVLLLLVII 117 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 38
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=68.60 E-value=37 Score=27.83 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s-----~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
||..-|.+.+.+++..-.+--+..++++.....|-+| .-.|++...+.+..+.|+++.+.++.
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 8888888888888755444444456665544444443 12345555666666666666555443
No 39
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=67.75 E-value=15 Score=26.82 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCcChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 81 ~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
.+.+..|.++++.+.+....|++|.+.||.-...
T Consensus 34 ~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 34 ASLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3478899999999999999999999999987443
No 40
>PRK09458 pspB phage shock protein B; Provisional
Probab=66.79 E-value=43 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhcccCCCc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 18 SVLFSIFGGVGIACLPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 18 ~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~--~is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.++|++|. .|+=|+.-|+++-|. .+|.++.. .-.++.++|+++.|+.+.||+
T Consensus 10 liiF~ifV------aPiWL~LHY~sk~~~~~~Ls~~d~~-~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 10 LTIFVLFV------APIWLWLHYRSKRQGSQGLSQEEQQ-RLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHH------HHHHHHHhhcccccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34555553 499999999885532 13433322 344566777777777777775
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.56 E-value=59 Score=24.86 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 028084 9 VVALATIVGSVLF 21 (214)
Q Consensus 9 ~i~~l~~iG~~lf 21 (214)
++.++++++++.|
T Consensus 5 ~~vll~ll~~l~y 17 (105)
T PRK00888 5 TLLLLALLVWLQY 17 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444544444
No 42
>PRK09609 hypothetical protein; Provisional
Probab=65.24 E-value=1.1e+02 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028084 91 VKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~ 111 (214)
.++++++...+|++-+.+|..
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~ 160 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKT 160 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888876
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.67 E-value=43 Score=34.08 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=16.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+++++|+++++.+++.|....+++..
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776666555433
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.40 E-value=31 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.280 Sum_probs=17.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.++-++++.|..+..+++++...++..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666655544
No 45
>PRK04654 sec-independent translocase; Provisional
Probab=64.36 E-value=51 Score=28.72 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHh
Q 028084 11 ALATIVGSVLFSIFG 25 (214)
Q Consensus 11 ~~l~~iG~~lfi~y~ 25 (214)
+=+.+|+.+.+++||
T Consensus 7 ~ELLlI~VVALlV~G 21 (214)
T PRK04654 7 GELTLIAVVALVVLG 21 (214)
T ss_pred HHHHHHHHHHHHhcC
Confidence 346667777777776
No 46
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=64.18 E-value=36 Score=26.61 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028084 60 LGKKARELKKAADTLH 75 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~ 75 (214)
+.+.-+++.|+...|+
T Consensus 72 i~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 72 IAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 47
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=64.14 E-value=1.4e+02 Score=28.76 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=6.6
Q ss_pred hhhhhhhHHHHhh
Q 028084 27 VGIACLPLGLIFS 39 (214)
Q Consensus 27 vGlaaLPi~lI~~ 39 (214)
+.++.+|+-++-.
T Consensus 168 ~~l~~~~~~~~~~ 180 (588)
T PRK11174 168 ILLGTAPLIPLFM 180 (588)
T ss_pred HHHHHHHHHHHHH
Confidence 3455556655543
No 48
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=63.69 E-value=65 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHh
Q 028084 142 VSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML 201 (214)
Q Consensus 142 lSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~~ 201 (214)
+++..++.+++-.... .|||+.||- +. .+++ ..++.....||..+
T Consensus 48 IG~~~v~pil~G~~lG-----------~WLD~~~~t-~~-~~tl--~~lllGv~~G~~n~ 92 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVG-----------IWLDRHYPS-PF-SWTL--TMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHhhcCC-Cc-HHHH--HHHHHHHHHHHHHH
Confidence 3444455556555555 788888885 34 3332 35666667777665
No 49
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=63.08 E-value=1.4e+02 Score=28.41 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCc
Q 028084 5 FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERS-GSK 83 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~-~~~ 83 (214)
|++-+|-+++++|.++|++||-+--++- + .-..++++++.|-...-.|.+.... ++.
T Consensus 30 lF~SLIQ~LIIlgLVLFmVYGn~h~~te------------------~----~lq~~e~ra~~L~~q~~~L~~~~~NLtke 87 (442)
T PF06637_consen 30 LFVSLIQFLIILGLVLFMVYGNVHVSTE------------------S----RLQATEQRADRLYSQVVGLRASQANLTKE 87 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcchhhH------------------H----HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455788899999999999986432221 1 1122344444444444444332210 000
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 84 s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
=+-..++.+...++.-...+|.+++..++.|
T Consensus 88 LN~t~~~K~~imq~ll~~rrdl~rinasfrQ 118 (442)
T PF06637_consen 88 LNLTTRAKDAIMQMLLNARRDLDRINASFRQ 118 (442)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0123345555566666666666666666555
No 50
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=62.57 E-value=11 Score=24.94 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=17.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 028084 85 RKWRKNVKSVEKELLQLEEDV 105 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~ 105 (214)
.+-|||++.|++.+++|..+.
T Consensus 14 eqlrrelnsLR~~vhelctRs 34 (48)
T PF10845_consen 14 EQLRRELNSLRRSVHELCTRS 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 357889999999999998775
No 51
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=62.55 E-value=40 Score=31.19 Aligned_cols=14 Identities=36% Similarity=0.441 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q 028084 131 AKLVLGILGFIVSV 144 (214)
Q Consensus 131 ~kLl~Gii~lllSl 144 (214)
||+-..+++++.|+
T Consensus 126 FKl~~tii~l~~~~ 139 (330)
T PF07851_consen 126 FKLYLTIILLLFAV 139 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766666
No 52
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=62.28 E-value=1.3e+02 Score=27.67 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=25.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC-CChhHHHHHHhhhhhh
Q 028084 125 TVLGYLAKL-VLGILGFIVSVAWVAHIVIYLLINPPL-HPFLNEVFIKLDDLWG 176 (214)
Q Consensus 125 ~~l~~~~kL-l~Gii~lllSl~w~i~iil~~i~k~~~-~~fLN~~f~~l~~~fp 176 (214)
+.+.||.-+ +.+++.+++-+.+++=.+..+...... .|+.-.++..+.++++
T Consensus 162 ~al~YP~~ll~~~~~v~~~~~~~vlP~f~~~~~~~~~~lP~~T~~l~~~s~~l~ 215 (399)
T PRK10573 162 KALRYPLIILAVALLVVLAMLHFVLPEFAAIYRSFNTPLPLLTRGILALSDFLI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 667776544 444444444444444444444443222 3555555555554433
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.54 E-value=75 Score=27.81 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 028084 100 QLEEDVKLLEEM 111 (214)
Q Consensus 100 ~Le~~~~~le~~ 111 (214)
.++++.++|.+.
T Consensus 97 ~l~~en~~L~~l 108 (276)
T PRK13922 97 QLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 54
>PRK09458 pspB phage shock protein B; Provisional
Probab=61.38 E-value=21 Score=26.11 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=28.4
Q ss_pred CCcChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 81 ~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
.+.|..|++.++.+-+..+.|++|.+.+|.-.
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999998863
No 55
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=60.98 E-value=66 Score=26.43 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=26.3
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028084 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
...+.|++-+.++++....|++.+++...+++=+
T Consensus 81 ~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~ 114 (157)
T PF14235_consen 81 EKARYKSEAEELEAKAKEAEAESDHALHHHHRFD 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhH
Confidence 3456778888899999999999888888755544
No 56
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=60.71 E-value=1.1e+02 Score=26.66 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHH----HHHHHHHHHHHHHHHHHHhc
Q 028084 56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVK----SVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~----~l~~~~~~Le~~~~~le~~~ 112 (214)
.+..-++-++++.+..++|+.....-+ .=.+|.+.++ ...+....|++...++++.+
T Consensus 161 ~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 161 HRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667788888888886332111 1133444333 34555566666777777653
No 57
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=60.01 E-value=32 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028084 89 KNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
+.++.++++...+|++.+++|.-.+..+
T Consensus 84 ~~l~~~~~~~~~~e~Rl~~mE~yVTS~~ 111 (121)
T TIGR02978 84 QALREVKREFRDLERRLRNMERYVTSDT 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5688899999999999999888755443
No 58
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=59.65 E-value=68 Score=23.59 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
+..+.+++++++..+|++.|.-...+.|.-|
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~G 43 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQRIG 43 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777777776654444435444
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.00 E-value=44 Score=31.16 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhccCCcC-----hHhHHHHHHHHHHHHHHHHHHH
Q 028084 53 YIKEATELGKKARELKKAADTLHQ-----EERSGSKG-----RKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~-----~~~~~~~s-----~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
|++....+.++.++|-++.++|++ ++++.+++ -+-|+.+.++++|..+++-+-=
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444455555555565555554 22323333 3666777777777777765543
No 60
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=58.59 E-value=67 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028084 89 KNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
.++++.++++...|++.|-....+.|.-|
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~G 40 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAEIAQRAG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 35555555555555555443333224443
No 61
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=58.50 E-value=1.4e+02 Score=28.88 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=4.8
Q ss_pred hhhhhhHHHHh
Q 028084 28 GIACLPLGLIF 38 (214)
Q Consensus 28 GlaaLPi~lI~ 38 (214)
.++.+|+-++-
T Consensus 171 ~l~~~~i~~~~ 181 (592)
T PRK10790 171 AIMIFPAVLVV 181 (592)
T ss_pred HHHHHHHHHHH
Confidence 33444554433
No 62
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=58.47 E-value=1.3e+02 Score=29.97 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.8
Q ss_pred hhhhhhhHHHHhhc
Q 028084 27 VGIACLPLGLIFSF 40 (214)
Q Consensus 27 vGlaaLPi~lI~~f 40 (214)
+.++++|+-++-.+
T Consensus 298 i~l~~~~~~~~~~~ 311 (710)
T TIGR03796 298 IGIAFAAINVLALQ 311 (710)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 63
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=58.31 E-value=41 Score=28.04 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 51 SQYIKEATELGKKARELKK 69 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e 69 (214)
+.|+..|+++++++++|..
T Consensus 34 ~~Yk~LKa~vdK~sKKLE~ 52 (186)
T KOG3312|consen 34 DKYKRLKAEVDKQSKKLEK 52 (186)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4477788888877766543
No 64
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=57.91 E-value=2.8e+02 Score=30.65 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhhccc
Q 028084 5 FPEYVVALATIVGSVLFSIFGG-----VGIACLPLGLIFSFIR 42 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y~g-----vGlaaLPi~lI~~f~~ 42 (214)
+..++.++.+++|.+.+.++-+ +-++.+|+-++-....
T Consensus 175 ~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~ 217 (1466)
T PTZ00265 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665544 4555667766665544
No 65
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.75 E-value=64 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
++++..+.++...|+++...+++..
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555543
No 66
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=57.70 E-value=64 Score=24.39 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=29.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH-HH----HHHHhhh--ccCCcChHhHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKK-AA----DTLHQEE--RSGSKGRKWRKNVKS 93 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e-~~----~~l~~~~--~~~~~s~k~rr~l~~ 93 (214)
+++.++.+.+.++..|..++.. .. ++++... +-..+|.++|++...
T Consensus 18 v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms~~e~~k~~~ 70 (93)
T PF06518_consen 18 VDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMSVEERKKRRE 70 (93)
T ss_dssp S-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 6777888999999999997776 33 3344322 225688887776554
No 67
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=57.03 E-value=94 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
-.++.+.++.+.-.|+.+.+.+++.|
T Consensus 142 ~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 142 IQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666666666666554
No 68
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=56.34 E-value=1.3e+02 Score=29.88 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=4.9
Q ss_pred hhhhHHHHhhc
Q 028084 30 ACLPLGLIFSF 40 (214)
Q Consensus 30 aaLPi~lI~~f 40 (214)
+++|+-.+-.+
T Consensus 303 ~~~~l~~~~~~ 313 (708)
T TIGR01193 303 LSIPVYAVIII 313 (708)
T ss_pred HHHHHHHHHHH
Confidence 34455444443
No 69
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=56.19 E-value=1.5e+02 Score=26.53 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 028084 134 VLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMM 200 (214)
Q Consensus 134 l~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~ 200 (214)
-+|++..++.++-..+ ++++| ..+=..+ +-.+. +.+|+++..|++|-=+.+..+
T Consensus 160 afGmiGTviGLI~mL~----~L~dp------~~IG~~m--AvAlv-tTlYGv~~Anlif~PiA~kL~ 213 (271)
T PRK06926 160 AWGMIGTLVGLVLMLK----NLNDP------STLGPNM--AIALL-TTLYGTLLANLVFLPIAAKLE 213 (271)
T ss_pred HHHHHHHHHHHHHHHH----hcCCH------HHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777654332 33442 2222222 33444 459999999999988777544
No 70
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=55.59 E-value=1.9e+02 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhH---HHHHHh
Q 028084 134 VLGILGFIVSVAWVAHIVIYLLINPPLHPFLN---EVFIKL 171 (214)
Q Consensus 134 l~Gii~lllSl~w~i~iil~~i~k~~~~~fLN---~~f~~l 171 (214)
-+|+...+-++..-+--++..+...|+-.+++ ++|.|.
T Consensus 347 qleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~v 387 (414)
T KOG2662|consen 347 QLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWV 387 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhh
Confidence 45555555555555556667777777777773 555554
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.11 E-value=50 Score=30.12 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 51 SQYIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
++|++.+.+++.++.++++..+.+..+++.-. .-...|.+-+..+..+..|-.+++.+.+
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776544321 1233444444445555555555544443
No 72
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=55.04 E-value=52 Score=26.90 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=34.0
Q ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~-~~l~e~~~~l~~~~~~~~~s~-----k~rr~l~~l~~~~~~Le~~~~~ 107 (214)
+|..-|.+.+.+++.-- .+.-|..++|+.....|-.|. ..|++...+.++.+.|+++.+.
T Consensus 5 lT~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 5 ITPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888887442 345556666765544444331 1334444555555555554444
No 73
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=54.97 E-value=72 Score=22.43 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 028084 98 LLQLEEDVKLLEEM 111 (214)
Q Consensus 98 ~~~Le~~~~~le~~ 111 (214)
...+.++-+.++..
T Consensus 36 i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 36 IKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555553
No 74
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.71 E-value=19 Score=32.89 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028084 58 TELGKKARELKKAADTLH 75 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~ 75 (214)
.||+||++||..+.|+++
T Consensus 74 eEL~Rke~ELdRREr~~a 91 (313)
T KOG3088|consen 74 EELRRKEQELDRRERALA 91 (313)
T ss_pred HHHHHHHHHHhHHHHHHh
Confidence 333333333333333333
No 75
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.84 E-value=1.6e+02 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+...+.+.+++++..++++.+.....
T Consensus 139 ~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 139 RLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888877776665554
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.69 E-value=62 Score=28.07 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-CcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~-~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+..++.++.+++.+..++++++-+.- ...++..+.++..+++...|+++.+.++..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444322211 122344455666666666666666666655
No 77
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=52.47 E-value=1.9e+02 Score=26.54 Aligned_cols=9 Identities=56% Similarity=0.456 Sum_probs=5.9
Q ss_pred hHHHHHHHH
Q 028084 125 TVLGYLAKL 133 (214)
Q Consensus 125 ~~l~~~~kL 133 (214)
+.+.||.-+
T Consensus 164 ~al~YP~~l 172 (399)
T TIGR02120 164 TALIYPAVL 172 (399)
T ss_pred HHHHhHHHH
Confidence 677777544
No 78
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=52.40 E-value=73 Score=29.79 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+....++++.+++.+...+++.+-.+.. |.+++++.++++...++++...+++-
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445445566666666665432222 77788888999999999988887764
No 79
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=51.74 E-value=1.4e+02 Score=24.95 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028084 60 LGKKARELKKAADTLHQ 76 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~ 76 (214)
.++++++..|.-.+++.
T Consensus 39 ~nkdakk~~q~~~ei~d 55 (175)
T KOG4253|consen 39 GNKDAKKESQKVAEIQD 55 (175)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 35556666666666665
No 80
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=51.50 E-value=37 Score=26.47 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 35 GLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLH 75 (214)
Q Consensus 35 ~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~ 75 (214)
..|+.-..+|++ .|..=+++++.+++ +-++..|++|
T Consensus 37 ~~IRr~mGKPRR-fS~aF~~eER~~Le----~~R~~iR~lQ 72 (109)
T PF06584_consen 37 QKIRRSMGKPRR-FSPAFLEEEREELE----RKRQKIRQLQ 72 (109)
T ss_pred HHHHHHcCCCCc-CcHHHHHHHHHHHH----HHHHHHHHHh
Confidence 456666777777 77777777777777 4444445554
No 81
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=50.85 E-value=82 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHH
Q 028084 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
+++...+++-+++.+.+.+..++++ .+...++++++.++..||++-+
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk---------~~~~~el~~Lk~~vqkLEDEKK 50 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELK---------ESHEEELNKLKSEVQKLEDEKK 50 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444 3456777888888888777643
No 82
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.58 E-value=1.4e+02 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 028084 124 LTVLGYLAKLVLGILGFIVSVAWV 147 (214)
Q Consensus 124 ~~~l~~~~kLl~Gii~lllSl~w~ 147 (214)
|..+.|.+-.++|++.++++++.+
T Consensus 152 ~~~lr~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 152 WDTLRWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666777777777776554
No 83
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=50.57 E-value=35 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
.|.+++.|+.++..|+++.+.++.
T Consensus 94 tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 94 SREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888888888888888777764
No 84
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.31 E-value=99 Score=22.64 Aligned_cols=28 Identities=11% Similarity=0.358 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~~~ 113 (214)
..-.+++.+++.++.||..+..++..|.
T Consensus 36 ~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 36 SQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999988763
No 85
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=49.79 E-value=2.1e+02 Score=26.45 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=11.4
Q ss_pred hhhhhhhhhHHHHhhccc
Q 028084 25 GGVGIACLPLGLIFSFIR 42 (214)
Q Consensus 25 ~gvGlaaLPi~lI~~f~~ 42 (214)
+..|.+|.|+.....+.+
T Consensus 211 ~~aa~~a~P~~~~gkw~~ 228 (336)
T PF05055_consen 211 ALAAALAAPIGSVGKWCG 228 (336)
T ss_pred HHHHHHccchHHHhHHHH
Confidence 355667788877764444
No 86
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=49.75 E-value=1.4e+02 Score=24.34 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhh
Q 028084 180 TAAFAFFCFYLLLAVIAGAMMLGLRL 205 (214)
Q Consensus 180 ~i~~~~~~~Yll~~s~~G~~~~GiRf 205 (214)
.+..|++.....+-..+...+.-.|+
T Consensus 146 ~~glGlll~~~~~~l~k~~~~~~~~y 171 (181)
T PF08006_consen 146 LFGLGLLLIVITFYLTKLFIKLTVRY 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555544443
No 87
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=49.67 E-value=34 Score=29.48 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 028084 56 EATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
..+.+..+-++|+..++.|+.+.
T Consensus 32 ~e~~~~~d~~~L~~~Q~~L~~e~ 54 (228)
T PRK06800 32 VEEEIQKDHEELLAQQKSLHKEL 54 (228)
T ss_pred hcchhhhhHHHHHHHHHHHHHHH
Confidence 45556666667777777777643
No 88
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=48.40 E-value=2.5e+02 Score=26.69 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=2.5
Q ss_pred hhhhHH
Q 028084 30 ACLPLG 35 (214)
Q Consensus 30 aaLPi~ 35 (214)
++.|+-
T Consensus 152 ~~~~l~ 157 (529)
T TIGR02857 152 LTAPLI 157 (529)
T ss_pred HHHHHH
Confidence 344443
No 89
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=48.21 E-value=21 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 028084 3 TTFPEYVVALATIVGSVLFSIFG 25 (214)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfi~y~ 25 (214)
.|...|++|+..++|.++|..||
T Consensus 47 lSii~FI~giil~lG~~i~s~yg 69 (92)
T PF05767_consen 47 LSIICFILGIILTLGIVIFSMYG 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999998876664
No 90
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=48.15 E-value=40 Score=33.64 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=26.5
Q ss_pred hHHHHhhcccCCCcccCHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q 028084 33 PLGLIFSFIRRPKAVITRSQYIKEAT----ELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 33 Pi~lI~~f~~Rpk~~is~~~~~~~~~----~l~~~~~~l~e~~~~l~~~~ 78 (214)
=+++|+..++|+|..+.+.-=.++|. .++.+++.+..+.++|.+++
T Consensus 485 QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er 534 (604)
T KOG3863|consen 485 QLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER 534 (604)
T ss_pred HHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999987565443333222 23444555555555555443
No 91
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=48.02 E-value=52 Score=27.12 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+|..-|.+.+.+++ .|. .+++.....|-.|. .|++.....++.+.|+++.+.++..
T Consensus 31 lT~~G~~~L~~El~----~L~---~~i~~Ar~~GDlsE-ak~~~~~~e~rI~~L~~~L~~A~Ii 86 (160)
T PRK06342 31 VTEAGLKALEDQLA----QAR---AAYEAAQAIEDVNE-RRRQMARPLRDLRYLAARRRTAQLM 86 (160)
T ss_pred ECHHHHHHHHHHHH----HHH---HHHHHHHHCCChhH-HHHHHHHHHHHHHHHHHHHccCEEE
Confidence 77777777777776 565 35555444455554 4556666777777777776665443
No 92
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.92 E-value=1.3e+02 Score=28.47 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 54 IKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~----~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+++.++..+.++++.+.+++.++-.. +....+.+.+.+++++++..||.+.+.++..
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666777666666553221 1111234445566666666666666555544
No 93
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=47.75 E-value=71 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhccCCcChHhHHHHHHH
Q 028084 67 LKKAADTLHQEERSGSKGRKWRKNVKSV 94 (214)
Q Consensus 67 l~e~~~~l~~~~~~~~~s~k~rr~l~~l 94 (214)
+.++.++|+.+.+.+..+..+|++++.+
T Consensus 99 ~~~~i~~L~~k~~~~~Lt~eEk~el~~L 126 (127)
T PF08278_consen 99 LERRIEELKAKPRRGGLTDEEKQELRRL 126 (127)
T ss_dssp HHHHHHHHHHHHTTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHh
Confidence 4444555555555555666666666654
No 94
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=47.66 E-value=1.3e+02 Score=25.53 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=37.6
Q ss_pred hhHHHHhhcccCCCcccCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 32 LPLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 32 LPi~lI~~f~~Rpk~~is~~~~~~-~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
|-+++|.+|-+ |.. +-..+..+++.|.-....||++.+.... +-..++++.++.|+..+.++-+..|.
T Consensus 91 L~l~FI~sf~~----------Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k-~~~n~~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 91 LELSFIDSFNQ----------YKNLELKSIKKEIEILRLKISSLQKEINKNKK-KDLNEEIESLKSELNDLIKEREIREM 159 (181)
T ss_pred HhhHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34467777643 333 4444556666888888888876542111 11223555666666666655554443
No 95
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.46 E-value=73 Score=32.04 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
.+.++.+++.++.+-++.++.+.+
T Consensus 126 ~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 126 KQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334555555555555555555444
No 96
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=47.37 E-value=27 Score=32.84 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028084 52 QYIKEATELGKKARELKKAADTL 74 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l 74 (214)
+..+++.+.+++.++..++-+.+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 200 KLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred hhcchhHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444444
No 97
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=47.33 E-value=1.6e+02 Score=24.08 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 48 is~~~~~~~~~~l~~~-~~~l~e~~~~l~~~~~~~~~s~-----k~rr~l~~l~~~~~~Le~~~~~l 108 (214)
+|.+-|.+.+.+++.. ..+.-|..+.++.....|-.+. ..|++...++++.+.|+++.+.+
T Consensus 7 lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A 73 (157)
T PRK01885 7 ITREGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLENL 73 (157)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888888888888754 3355566666766554443321 13444455555555555555443
No 98
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=47.27 E-value=2.7e+02 Score=26.88 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 028084 93 SVEKELLQL 101 (214)
Q Consensus 93 ~l~~~~~~L 101 (214)
++++....+
T Consensus 220 ~~~~~~~~~ 228 (588)
T PRK13657 220 ALRDIADNL 228 (588)
T ss_pred HHHHHHHHH
Confidence 333333333
No 99
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=47.24 E-value=64 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~ 107 (214)
...|+++|++.+++=|+.-++
T Consensus 129 ~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 129 TDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445777777666665555444
No 100
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.99 E-value=72 Score=28.17 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~l 108 (214)
.-..+..+-|..+++..+||++- ++.++++..+++|+..|..|..+|
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~el------r~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEEL------RKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788888887764 466777888888888888885554
No 101
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.67 E-value=60 Score=28.87 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+.++|.+.+.+.+.-+++=++..++.+.+-. .+..--.+|-+.|++++.+|+++...+...
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~--~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMA--HRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888777777666666666655553221 011223456667777777777776665555
No 102
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=46.61 E-value=44 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHH
Q 028084 52 QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQ 100 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~ 100 (214)
.|.+...++....++..+...+++.+-...+.-++.|.+++.+.+....
T Consensus 78 ~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~ 126 (139)
T PF05615_consen 78 NYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINS 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555555554333333334444455555444443
No 103
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=46.56 E-value=1.3e+02 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028084 133 LVLGILGFIVSVAWVA 148 (214)
Q Consensus 133 Ll~Gii~lllSl~w~i 148 (214)
.++|.+..++|.+++.
T Consensus 75 wilGlvgTi~gsliia 90 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIA 90 (98)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566776666665543
No 104
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.21 E-value=1.2e+02 Score=28.46 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028084 54 IKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
......+.+++++-.|+....|+
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~ 235 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566655555555543
No 105
>PHA03048 IMV membrane protein; Provisional
Probab=46.11 E-value=24 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 028084 3 TTFPEYVVALATIVGSVLFSIFG 25 (214)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfi~y~ 25 (214)
.|...|++|.+.++|.++|.-|+
T Consensus 46 lsii~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 46 LSGIAFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36678999999999998766554
No 106
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=46.05 E-value=3.2e+02 Score=27.24 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
...+......+.++-.+.++.-. ...++.+++++....+.+...+..
T Consensus 273 ~~~~~~~~~~e~l~g~~~I~~~~-------~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 273 LEGEYRYVHSRLIMNSEEIAFYQ-------GNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555322 233444455555555444444433
No 107
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=46.02 E-value=1.1e+02 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
+..+.+++.+++..+|++.|.-...+.|.-|
T Consensus 10 ~~~d~~~i~~rLd~iEeKVEf~~~E~~Qr~G 40 (70)
T TIGR01149 10 EPDEFNEVMKRLDEIEEKVEFVNGEVAQRIG 40 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666665554333334444
No 108
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=45.74 E-value=38 Score=21.99 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=24.0
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028084 123 ALTVLGY---LAKLVLGILGFIVSVAWVAHIV 151 (214)
Q Consensus 123 ~~~~l~~---~~kLl~Gii~lllSl~w~i~ii 151 (214)
.|.++.| |.-++.|++...+.-.|.+|+-
T Consensus 8 iWhvLGY~AmPvI~L~GF~~Vav~~~~lL~~~ 39 (42)
T PF09574_consen 8 IWHVLGYAAMPVIILSGFAAVAVASIWLLSLT 39 (42)
T ss_pred HHHHhccccchHHHHhhHHHHHHHHHHHHHhh
Confidence 4567777 8889999999999999998863
No 109
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=45.66 E-value=59 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=15.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
-|-|+.+.+++++..++.-+.-.++.
T Consensus 338 vkIkqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 338 VKIKQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHHHHhhhhheehhhH
Confidence 35666666777666666655444443
No 110
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=45.10 E-value=1.1e+02 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=15.0
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 84 s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
|.++||. |++-|++|.+|--++..+...
T Consensus 4 Se~E~r~---L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 4 SEHEQRR---LEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred CHHHHHH---HHHHHHHHHhcCcHHHHHhcc
Confidence 4555554 445556665555555555444
No 111
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.63 E-value=85 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHH
Q 028084 174 LWGLLGTAAFAFFCFYLLLAVIAGAM 199 (214)
Q Consensus 174 ~fpll~~i~~~~~~~Yll~~s~~G~~ 199 (214)
.+| +|..--..---++.+|..-|++
T Consensus 199 twp-~~~~~~~fr~~fl~f~~~~~~v 223 (330)
T PF07851_consen 199 TWP-DGEAYQKFRPQFLLFSLYQSVV 223 (330)
T ss_pred cCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 355 3333333333444445444444
No 112
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.35 E-value=1.7e+02 Score=26.77 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cC----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KG----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s----~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
.+.+++.+.+.+|+++..++-....+|+.+-++-+ +- ++.-+.++.+....-+|.+..+++|.
T Consensus 115 ~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 115 ESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56667778888888888888887777776443321 11 12223444444444445555444444
No 113
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.02 E-value=1e+02 Score=33.73 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CCChhHHHHHHhhh-hhhHHHHHHHHHHH
Q 028084 129 YLAKLVLGILGFIVSVAWVAHIVIYLLINPP---------LHPFLNEVFIKLDD-LWGLLGTAAFAFFC 187 (214)
Q Consensus 129 ~~~kLl~Gii~lllSl~w~i~iil~~i~k~~---------~~~fLN~~f~~l~~-~fpll~~i~~~~~~ 187 (214)
+.++-++|++++++++.++++++=|.-.+++ ++|..-.+=-++++ .+-+||+..|.+.+
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577889999999999999999988777642 33444333344433 24455555555443
No 114
>PRK01622 OxaA-like protein precursor; Validated
Probab=43.97 E-value=1.5e+02 Score=26.14 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhHH
Q 028084 183 FAFFCFYLLLAVIAGAM 199 (214)
Q Consensus 183 ~~~~~~Yll~~s~~G~~ 199 (214)
=+.+.+|...+++-+..
T Consensus 226 Psgl~lYW~~snl~si~ 242 (256)
T PRK01622 226 PSALVLYWITGGLFLMG 242 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467777777666543
No 115
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.97 E-value=1.1e+02 Score=21.59 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHH
Q 028084 59 ELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~ 104 (214)
.++.+.++|++..++++.+- ..-|.+....+.|-..|.++
T Consensus 4 ~Le~kle~Li~~~~~L~~EN------~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSEN------RLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888887653 23344444444444444433
No 116
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=43.90 E-value=1.6e+02 Score=23.18 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=13.7
Q ss_pred CcChHhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 028084 82 SKGRKWRK-NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 82 ~~s~k~rr-~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+|...++ .-+.+++.+..|++..+..+..
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34543332 3334555555665555554444
No 117
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=43.71 E-value=1.4e+02 Score=27.10 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh--hhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 9 VVALATIVGSVLFSIFGGVGIA--CLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 9 ~i~~l~~iG~~lfi~y~gvGla--aLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
+...+++++++.++++...|+- ..|+.=--+.. +++ .|.+|+.+. ++.++|+..+++.
T Consensus 57 l~~~~~~~~~~y~~F~~~WGlNY~R~pl~~~l~l~--~~~-~~~~eL~~l-------~~~li~~~N~l~~ 116 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLWGLNYYRPPLSERLGLE--TEE-YSTEELKEL-------TEYLIEKANELRE 116 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcCHHHHcCCC--CCC-CCHHHHHHH-------HHHHHHHHHHHHH
Confidence 5667777777777777777774 44444333322 222 555554443 3444555555544
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.53 E-value=1.3e+02 Score=27.24 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 028084 133 LVLGILGFIV 142 (214)
Q Consensus 133 Ll~Gii~lll 142 (214)
-.+|-+++++
T Consensus 173 AA~Gq~~LLL 182 (314)
T PF04111_consen 173 AAWGQTALLL 182 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445444443
No 119
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.32 E-value=1.6e+02 Score=24.04 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~----~~~s~k~rr~l~~l~~~~~~Le~ 103 (214)
+|.++-++..+..++-..+..+.-+++..+..+ -..+.-|..+++++.+|..+|..
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 777765554444433333333333333322211 01122344455555555555543
No 120
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=42.80 E-value=98 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 50 RSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 50 ~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
..|+..+|.++..+.-+-+|.-+.+++
T Consensus 523 ekQiq~Ek~ELkmd~lrerelreslek 549 (641)
T KOG3915|consen 523 EKQIQLEKTELKMDFLRERELRESLEK 549 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666555555555555543
No 121
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.74 E-value=2.1e+02 Score=27.08 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+...++..++++....++.++.+...
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655555444333
No 122
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.58 E-value=1.9e+02 Score=23.63 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le 109 (214)
+++.++.+...++++.+.+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 123
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.47 E-value=1.2e+02 Score=21.25 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcC--hHhHHHHHHHHHHHHHHHHHHH
Q 028084 58 TELGKKARELKKAADTLHQEERSGSKG--RKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~~~~~~~~~s--~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
.++++..++..+.-++.+-+-+....+ .....++..++.+...|+++.+
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555555444432111 2344466667777777776654
No 124
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=42.41 E-value=3.1e+02 Score=26.20 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028084 9 VVALATIVGSVLFSI 23 (214)
Q Consensus 9 ~i~~l~~iG~~lfi~ 23 (214)
+.++..++|.+++++
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (576)
T TIGR02204 140 LRNALMCIGGLIMMF 154 (576)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 125
>PLN02678 seryl-tRNA synthetase
Probab=42.00 E-value=1.8e+02 Score=27.98 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc----cCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 55 KEATELGKKARELKKAADTLHQEER----SGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~----~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++.++..+.++++.+..++.++-. .+......+.+.+.++++...||.+.+.++..
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677666665554221 11111233445566666666666666555543
No 126
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.88 E-value=1.3e+02 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
|.+++.++.++..||++.+.|+.-
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777654
No 127
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=41.87 E-value=35 Score=22.69 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 028084 92 KSVEKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~~~ 113 (214)
+.|++.+..||.+.+.|+.++.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776643
No 128
>PLN02320 seryl-tRNA synthetase
Probab=41.77 E-value=1.6e+02 Score=28.88 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---CCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERS---GSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~---~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
++.++..+.++++.+.+++.++-.+ +....+.+.+.+.++++...||.+.+.+++
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555443221 111123344556666666666666555544
No 129
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=41.51 E-value=3.3e+02 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028084 8 YVVALATIVGSVLFSIFG 25 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~ 25 (214)
.+.+++++++.++..++-
T Consensus 146 ~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 146 VVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 130
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.28 E-value=2e+02 Score=23.50 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
+.+.++..+++++..|+++++.++...
T Consensus 149 ~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 149 KTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577789999999999999888764
No 131
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=40.91 E-value=98 Score=28.98 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=9.1
Q ss_pred ccCCCcccCHHHHHH
Q 028084 41 IRRPKAVITRSQYIK 55 (214)
Q Consensus 41 ~~Rpk~~is~~~~~~ 55 (214)
++||+. +|+.|-.+
T Consensus 270 p~~P~~-Lt~~q~~~ 283 (418)
T PF11917_consen 270 PRAPRE-LTDEQKAS 283 (418)
T ss_pred CCCCcc-CCHHHHhh
Confidence 477887 77666433
No 132
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=40.88 E-value=61 Score=26.53 Aligned_cols=49 Identities=6% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEK 96 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~ 96 (214)
+|+.++.++-....++.++-.+..+.-+++.....++.+.+++++++++
T Consensus 118 iss~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~l~~lrr 166 (166)
T PF05991_consen 118 ISSEEFLRELKAAKREIRKEARERSSKKKKKLDDRLSPEELEKLEKLRR 166 (166)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCHHHHHHHHHHhC
Confidence 7777776644433333332111111112233334577777777777653
No 133
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.66 E-value=1.6e+02 Score=22.36 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028084 58 TELGKKARELKKAADTLHQ 76 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~~ 76 (214)
.++.++.+++.++-.+++.
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~ 56 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALET 56 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554
No 134
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=40.24 E-value=1.6e+02 Score=22.28 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=22.9
Q ss_pred CCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028084 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 81 ~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
...+..+|..++++++.........+++......++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 136 (181)
T PF12729_consen 101 LILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGD 136 (181)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 334566777888888777777766666555433443
No 135
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=40.19 E-value=37 Score=19.36 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028084 89 KNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~ 106 (214)
++++++++....||++..
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 367788888888887643
No 136
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.82 E-value=2.5e+02 Score=25.28 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHH
Q 028084 55 KEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
+.+..+..+.+.+......++++..+-. ...+...++.+++.+...++++-+
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777766544322 234556677777777777776643
No 137
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=39.44 E-value=2.5e+02 Score=27.68 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHHHhhcc---cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CC-cChHhHH--------HHHHHHHHHHH
Q 028084 34 LGLIFSFI---RRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERS-GS-KGRKWRK--------NVKSVEKELLQ 100 (214)
Q Consensus 34 i~lI~~f~---~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~-~~-~s~k~rr--------~l~~l~~~~~~ 100 (214)
.+..+... .++.. + ...+.+.+.++++.-+++.+...++...-.+ .. ...|..+ -.+..+++-.+
T Consensus 408 ~~~~~~~~~~~~~~~~-~-~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~ 485 (542)
T PF10079_consen 408 EELLKERWLEEQDPSE-I-EDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKRKHET 485 (542)
T ss_pred HHHHHHHHHHhccccc-H-HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555555 33322 2 2345667777777777777777666531111 00 0122222 33334444444
Q ss_pred HHHHHHHHHHh-cccCcccchhhhhhHHHHHHHHHHHHHH
Q 028084 101 LEEDVKLLEEM-YPQGEKAETSWALTVLGYLAKLVLGILG 139 (214)
Q Consensus 101 Le~~~~~le~~-~~~~~~~~~~~~~~~l~~~~kLl~Gii~ 139 (214)
.-++.++++.. ++.+.-+|+.| |++-++.+--.+++-
T Consensus 486 ~l~q~~~l~~~L~P~g~~QERv~--n~~~f~~kyG~~~i~ 523 (542)
T PF10079_consen 486 ALRQLDRLENSLFPNGSPQERVY--NFFYFLNKYGPDFID 523 (542)
T ss_pred HHHHHHHHHhhcCCCCCCcccch--hHHHHHHHhhHHHHH
Confidence 44455556666 66776677744 777766666444443
No 138
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=39.27 E-value=2.1e+02 Score=23.23 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCChhHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 028084 129 YLAKLVLGILGFIVSVAWVAHIVIY-LLINPPLHPFLNEV---FIKLDDLWGLLGTAAFAFFCFYLLLAVI 195 (214)
Q Consensus 129 ~~~kLl~Gii~lllSl~w~i~iil~-~i~k~~~~~fLN~~---f~~l~~~fpll~~i~~~~~~~Yll~~s~ 195 (214)
.|+.|++=++..-+-+.|+-|.+.. ++|.--..|=||.+ -+-+=-+-| |.++|+-+-||...+.
T Consensus 39 ~Y~~LfiVFl~AG~vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNilMYaIP---y~L~Ala~GFlv~~~~ 106 (141)
T PRK13743 39 IYFDLFIVFLTAGIVLWVIMHSIFDACIDSWKADPELNNFRYMWNILMYVIP---YTLWALAAGFLVAGVR 106 (141)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHHHH---HHHHHHHhchhhhhhh
Confidence 3677766666666667778887775 66664455666532 222333445 4566666666554443
No 139
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=39.19 E-value=1.7e+02 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
+-+|+..+++.....++..++.|..|+..-.
T Consensus 153 ~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~ 183 (265)
T PF06409_consen 153 AMKEIHTYKQMFQRMQELQQRAEDYYKCKIA 183 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4457778888888888888888888776543
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.16 E-value=1.9e+02 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=4.6
Q ss_pred HhhhhhhheecccC
Q 028084 200 MLGLRLVFITIHPM 213 (214)
Q Consensus 200 ~~GiRf~~i~i~pm 213 (214)
++|+.|-=.++.||
T Consensus 188 ~l~~~f~~y~l~P~ 201 (314)
T PF04111_consen 188 KLNFKFQRYRLVPM 201 (314)
T ss_dssp HCT---SSEEEE--
T ss_pred HhCCCcccceeEec
Confidence 44544444555554
No 141
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.93 E-value=2e+02 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=23.6
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.++..+++++++++.+++||+..+++-..
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999997775444
No 142
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.90 E-value=95 Score=30.52 Aligned_cols=30 Identities=30% Similarity=0.197 Sum_probs=16.6
Q ss_pred hhhhhhhhhH------HHHhhcccCCCcccCHHHHHH
Q 028084 25 GGVGIACLPL------GLIFSFIRRPKAVITRSQYIK 55 (214)
Q Consensus 25 ~gvGlaaLPi------~lI~~f~~Rpk~~is~~~~~~ 55 (214)
++|||--||= ..+-++.. |++-|+-+++++
T Consensus 442 ~~YgLl~lP~M~Elk~~~~~~~~~-~~~~id~~~iky 477 (567)
T KOG0345|consen 442 TLYGLLRLPKMPELKQYKIGEFFF-PKPAIDFSEIKY 477 (567)
T ss_pred HHHHHHhCCCcHHHhhhhccceec-cCCCcchhhhcc
Confidence 5677777772 23333322 433377777755
No 143
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=38.85 E-value=1.6e+02 Score=23.61 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~-~~l~e~~~~l~~~~~~~~~s-----~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+|.+-|++.+.+++.-- .+.-|..+.++...+.|-++ .-.|++...+.+..+.|+++.+.++.
T Consensus 2 ~T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 56666777666666322 23333444455433333322 22345666677777777777666554
No 144
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=38.79 E-value=4.1e+02 Score=26.54 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 028084 8 YVVALATIVGSVLFSIFGGVGI 29 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~gvGl 29 (214)
.+.+++.++|.+.++++-+..+
T Consensus 282 ~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 282 LLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555555555555544443
No 145
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=38.79 E-value=2.1e+02 Score=23.62 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHH
Q 028084 91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (214)
.+.++-....|++..+.+++..++++ -+..++-++.|++..+
T Consensus 127 ~k~i~L~~e~L~~~~~~a~~~~~k~~---------Kmy~~LGvl~Gl~lvI 168 (171)
T PRK08307 127 QKHIRLALEHLEREEEEAEEEQKKNE---------KMYKYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHH
Confidence 34455556667777666666633333 2334555666665544
No 146
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=38.63 E-value=24 Score=23.43 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhhhh
Q 028084 19 VLFSIFGGVGIACL 32 (214)
Q Consensus 19 ~lfi~y~gvGlaaL 32 (214)
++-+++|++|++|+
T Consensus 3 iLviL~g~vGLsa~ 16 (46)
T PF11431_consen 3 ILVILFGAVGLSAL 16 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHhHHHHH
Confidence 45678888888875
No 147
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=38.62 E-value=1.1e+02 Score=29.46 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC---CcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQEERSG---SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~---~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
...-+++|.++|.++.+..+++-.+. ......+++.+.+.++...|.++.+.++..
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 222 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENM 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666533322 223344455555555555555554444433
No 148
>PRK10722 hypothetical protein; Provisional
Probab=38.44 E-value=88 Score=27.84 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~l 108 (214)
+++...+++..|-+=+|.|
T Consensus 191 ~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 191 QLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333
No 149
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=38.30 E-value=1.7e+02 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028084 88 RKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le 109 (214)
...+++=++|.++||++-+.++
T Consensus 238 de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 238 DEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4466677777888888777653
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.26 E-value=1.5e+02 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 028084 62 KKARELKKAADTLHQEER 79 (214)
Q Consensus 62 ~~~~~l~e~~~~l~~~~~ 79 (214)
++..+|++.|+.|....-
T Consensus 12 e~Ia~L~eEGekLSk~el 29 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKEL 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334499999999987543
No 151
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.20 E-value=1.8e+02 Score=27.49 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc----CCc-ChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERS----GSK-GRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~----~~~-s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
++.++..+.++++....++.++-.+ +.. ..+.+.+.+.++++...||...+.+++
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444432211 111 112333445555555555555555444
No 152
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=38.10 E-value=2.2e+02 Score=23.46 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHH
Q 028084 91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (214)
.+.++-....|++..+.+++..++++ -+..++-++.|++..+
T Consensus 126 ~k~i~L~~~~L~~~~~~a~~~~~k~~---------Kmy~~LGvl~Gl~lvI 167 (170)
T TIGR02833 126 QKHINLTLEHLERQLTEAEDEQKKNE---------KMYRYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHH
Confidence 34455556666666666666633332 2334566666665544
No 153
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=38.03 E-value=1.7e+02 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhh-------------hhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHH
Q 028084 13 ATIVGSVLFSIFGGVGIA-------------CLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67 (214)
Q Consensus 13 l~~iG~~lfi~y~gvGla-------------aLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l 67 (214)
+..+|-+.|..+-..|+= ..=+.++-+|..|-- -..-+|.+.+.+.++..+++
T Consensus 13 v~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~--t~~MTy~~Q~k~Ye~a~~~~ 78 (104)
T PF11460_consen 13 VFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVV--TGKMTYMQQRKDYEEAVDQL 78 (104)
T ss_pred HHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhc--cCCCcHHHHHHHHHHHHHHH
Confidence 345677777777777752 223778888888761 12224666555555444443
No 154
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.82 E-value=1.2e+02 Score=31.73 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028084 53 YIKEATELGKKARELKKAADT 73 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~ 73 (214)
|..-.+++++|-+.|.|+++.
T Consensus 322 y~kGqaELerRRq~leeqqqr 342 (1118)
T KOG1029|consen 322 YEKGQAELERRRQALEEQQQR 342 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 445566777777777776643
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.82 E-value=1.2e+02 Score=27.08 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 028084 72 DTLHQEE 78 (214)
Q Consensus 72 ~~l~~~~ 78 (214)
..+|.++
T Consensus 159 eele~e~ 165 (290)
T COG4026 159 EELEAEY 165 (290)
T ss_pred HHHHHHH
Confidence 3333333
No 156
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.45 E-value=1.3e+02 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028084 57 ATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
+.+..++.++.-+..+.++.++
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~ 58 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEY 58 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444
No 157
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.18 E-value=2.3e+02 Score=25.70 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le 109 (214)
...++..++++...-++-++.+.
T Consensus 276 ~~~~~~~L~re~~~a~~~y~~~l 298 (362)
T TIGR01010 276 QTADYQRLVLQNELAQQQLKAAL 298 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555554433
No 158
>PHA02898 virion envelope protein; Provisional
Probab=36.88 E-value=41 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 028084 3 TTFPEYVVALATIVGSVLFSIFG 25 (214)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfi~y~ 25 (214)
.|..-|++|...++|.++|.-|+
T Consensus 47 lSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 47 ISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677999999999998876665
No 159
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.62 E-value=46 Score=25.16 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 028084 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGL 36 (214)
Q Consensus 4 sf~~f~i~~l~~iG~~lfi~y~gvGlaaLPi~l 36 (214)
-+...+++.+..+|.++.. -|++|+.-+|=|+
T Consensus 3 ~~~~ii~~illiiG~~f~l-~gaiGllRlPD~~ 34 (91)
T PRK06286 3 QFVGIIQDILLIIASIGIL-IASIRLWRVEKDR 34 (91)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHhheeCCCcc
Confidence 3456777888888876554 4999999998655
No 160
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=36.30 E-value=1.7e+02 Score=21.37 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 132 KLVLGILGFIVSVAWVA 148 (214)
Q Consensus 132 kLl~Gii~lllSl~w~i 148 (214)
-+.+|+.+++..++|++
T Consensus 72 li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34577888888888875
No 161
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=36.21 E-value=2.2e+02 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 028084 7 EYVVALATIVGSVLFSIFGGVGIACLPLGLI 37 (214)
Q Consensus 7 ~f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI 37 (214)
+..+..+..++|.+..+..+......++...
T Consensus 130 i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 130 IFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhhhHhhhhh
Confidence 3444555566666665555444444444333
No 162
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=36.03 E-value=2.3e+02 Score=23.08 Aligned_cols=41 Identities=24% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHH
Q 028084 92 KSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (214)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (214)
+.++--..+|++..+.+++..++++ -+.+++-++.|++..+
T Consensus 127 k~i~l~~~~L~~~~~~a~~~~~~~~---------Klyr~LGvl~G~~lvI 167 (170)
T PF09548_consen 127 KHIELYLEQLEQQLEEAREEAKKKG---------KLYRSLGVLGGLFLVI 167 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHH
Confidence 3445555566666666655533332 3335666667765544
No 163
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.96 E-value=1.8e+02 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 49 TRSQYIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 49 s~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+-+...+.+..+++....+.+.-..|+.+.+.-. .-.+|...++.|++..+.+++..+..++.
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666677666666666666665433211 22456677777777777777776665554
No 164
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=35.91 E-value=1.3e+02 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHhhh
Q 028084 186 FCFYLLLAVIAGAMMLGL 203 (214)
Q Consensus 186 ~~~Yll~~s~~G~~~~Gi 203 (214)
+...+++||-.=...+|+
T Consensus 154 l~~~ifscTe~EA~nlG~ 171 (298)
T PF11262_consen 154 LSPLIFSCTENEAENLGR 171 (298)
T ss_pred hhhHHhccCHHHHHHHHH
Confidence 444556666666666663
No 165
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=35.79 E-value=3.8e+02 Score=25.17 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=32.6
Q ss_pred hhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028084 32 LPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG 84 (214)
Q Consensus 32 LPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s 84 (214)
+|++-+...+.. +.=.+.+..+.+.++++++.+.+-++|++-...++....
T Consensus 197 lPl~~~~~~id~--H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~ 247 (377)
T PF14728_consen 197 LPLQEYFEIIDQ--HFELRQELKELEEELDERAQQFRAIQRRLLTRFKDKNPA 247 (377)
T ss_pred CcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 577666654331 101233456677888889999999998888766654443
No 166
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.78 E-value=1.3e+02 Score=32.08 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=11.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
|+++|+-+...+|. ++++.-++|+..
T Consensus 171 ig~~~ll~~h~eL~----~lr~~e~~Le~~ 196 (1072)
T KOG0979|consen 171 IGAEELLQYHIELM----DLREDEKSLEDK 196 (1072)
T ss_pred cCchhhHHHHHHHH----HHHHHHHHHHHH
Confidence 55554433333333 444444555543
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.65 E-value=2.1e+02 Score=23.66 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+...|+.++++|+..-|.+.+.+++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555
No 168
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=35.63 E-value=1e+02 Score=27.92 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=36.8
Q ss_pred hhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHH
Q 028084 30 ACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELL 99 (214)
Q Consensus 30 aaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~ 99 (214)
+.-|+--+|.|....|. + +-+.++..=.+++.|..+-++++++.-.-+.+|..+++.+.++++
T Consensus 223 ~~pii~~LKr~~K~~k~----~---~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 223 ALPIIVQLKRFLKSCKN----A---KFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHHHHHHccc----H---HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 34445556666543221 2 233444444446666666777776666677888888888776653
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.43 E-value=2.6e+02 Score=23.30 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~l 108 (214)
++..++++...|+.+.+.+
T Consensus 112 e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 170
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.39 E-value=2.4e+02 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028084 89 KNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (214)
.+++.+.++....++||+.|-.
T Consensus 125 ~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 125 KELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 171
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.08 E-value=1.5e+02 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=15.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
.+.|.+++.++.+...|+..-+.+....
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666555555443
No 172
>PRK11637 AmiB activator; Provisional
Probab=34.90 E-value=1.5e+02 Score=27.81 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEED 104 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~ 104 (214)
+++.+++++..|++.
T Consensus 234 ~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 234 QLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 173
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.70 E-value=1.5e+02 Score=28.41 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~~~ 113 (214)
.+++..++.+...||++...+|..|.
T Consensus 258 e~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777666666644
No 174
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=34.68 E-value=1e+02 Score=25.99 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhHHHHh
Q 028084 2 RTTFPEYVVALATIVGSVLFSIFGGVGIAC----LPLGLIF 38 (214)
Q Consensus 2 ~vsf~~f~i~~l~~iG~~lfi~y~gvGlaa----LPi~lI~ 38 (214)
+.+-+.+++|-....|+++..+|+|+=..+ +|+.|+.
T Consensus 105 r~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~l 145 (188)
T KOG4050|consen 105 RTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVL 145 (188)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999997764 5777765
No 175
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=34.60 E-value=4e+02 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=15.0
Q ss_pred hhhhhhhhhHHHHhhcccCC
Q 028084 25 GGVGIACLPLGLIFSFIRRP 44 (214)
Q Consensus 25 ~gvGlaaLPi~lI~~f~~Rp 44 (214)
+.+.+++.|+..+-+...-|
T Consensus 296 ~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888876655
No 176
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.52 E-value=2e+02 Score=23.70 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le 109 (214)
++.+-+.+...+..|+.+.+.|+
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555544
No 177
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=33.97 E-value=1.7e+02 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=10.8
Q ss_pred HhHHHHHHH--HHHHHHHHHHHHH
Q 028084 86 KWRKNVKSV--EKELLQLEEDVKL 107 (214)
Q Consensus 86 k~rr~l~~l--~~~~~~Le~~~~~ 107 (214)
+.+++.+.+ .++++.||.+-..
T Consensus 60 ~L~kKi~~l~veRkmr~Les~p~~ 83 (109)
T PF11690_consen 60 KLRKKIQDLRVERKMRALESHPFD 83 (109)
T ss_pred HHHHHHHHHHHHHHHHhccCChHH
Confidence 444455554 5555555544433
No 178
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=33.72 E-value=2e+02 Score=21.46 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028084 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++..|...+..|+.....||..
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555543
No 179
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=33.35 E-value=1.3e+02 Score=30.23 Aligned_cols=64 Identities=31% Similarity=0.361 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC------CcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028084 54 IKEATELGKKARELKKAADTLHQEERSG------SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~~------~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
.+....++++.+++.|+-.+.+.+.+.. ....+.+++.++.++.+..|+++...++...+..+.
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkee 704 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEE 704 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 4455556666767777666655433221 133566778888888888888888887776555443
No 180
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=33.35 E-value=2.2e+02 Score=21.78 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhccCCcChH
Q 028084 67 LKKAADTLHQEERSGSKGRK 86 (214)
Q Consensus 67 l~e~~~~l~~~~~~~~~s~k 86 (214)
.+++-.+++++.++|..+..
T Consensus 41 yr~qL~ELe~d~~~G~l~~~ 60 (117)
T TIGR03142 41 YRDRLAELERDLAEGLLDEA 60 (117)
T ss_pred HHHHHHHHHHHHHcCCCCHH
Confidence 34555566666566666554
No 181
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=33.29 E-value=1.3e+02 Score=27.86 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=41.8
Q ss_pred hhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcChHhHHHHHHHHHHHHHHHH
Q 028084 25 GGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 25 ~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~-~~s~k~rr~l~~l~~~~~~Le~ 103 (214)
|++-+|---++|++.+++|.+. =++.+ -.+.+++.|+++++...+. ..++=-||=++..|+|+.+|-.
T Consensus 25 gS~aiA~eTl~llr~iIs~~rw-~~~n~----------Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE~~~l~~ 93 (353)
T KOG1465|consen 25 GSYAIAIETLNLLRQIISRERW-STAND----------LIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREEVLELTG 93 (353)
T ss_pred CcHHHHHHHHHHHHHHHHhhCc-ccHHH----------HHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3555566667888888776554 22221 1237778888888755432 2445567777777777666654
Q ss_pred H
Q 028084 104 D 104 (214)
Q Consensus 104 ~ 104 (214)
.
T Consensus 94 ~ 94 (353)
T KOG1465|consen 94 G 94 (353)
T ss_pred c
Confidence 4
No 182
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.23 E-value=2.9e+02 Score=24.61 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028084 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++..+.+...|+.+..+|++.
T Consensus 164 e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344433334333
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.98 E-value=3.4e+02 Score=23.86 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028084 57 ATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
...++.+.+.+.|.+++|+.-.
T Consensus 46 e~~~~~~~~~~~~l~~ql~~lq 67 (263)
T PRK10803 46 ERISNAHSQLLTQLQQQLSDNQ 67 (263)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 3344555566777777777533
No 184
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.94 E-value=1.6e+02 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028084 89 KNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (214)
.+++.++++...|+.+.+....
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666654433
No 185
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.84 E-value=2e+02 Score=21.16 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+.++.+.++.+...-++-+.....+..+......-+.++..+..++.+.+.|+.+
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544445444444444433333322223334455677777777777777666
No 186
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=32.50 E-value=2.2e+02 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
|+-+.+.++.+..++.+.+.-.+
T Consensus 59 r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 59 RQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=32.44 E-value=1.1e+02 Score=31.98 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhcCC
Q 028084 145 AWVAHIVIYLLINP 158 (214)
Q Consensus 145 ~w~i~iil~~i~k~ 158 (214)
.=.+.=-+|.+|.|
T Consensus 598 ~q~lq~al~~ld~P 611 (980)
T KOG0980|consen 598 IQALQNALYQLDSP 611 (980)
T ss_pred HHHHHHHHHhcCCC
Confidence 33444555666654
No 188
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.36 E-value=1.3e+02 Score=30.91 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=7.4
Q ss_pred hhhHHHHhhccc
Q 028084 31 CLPLGLIFSFIR 42 (214)
Q Consensus 31 aLPi~lI~~f~~ 42 (214)
.+|-+.|..+..
T Consensus 493 Glp~~ii~~A~~ 504 (771)
T TIGR01069 493 GIPHFIIEQAKT 504 (771)
T ss_pred CcCHHHHHHHHH
Confidence 467777766543
No 189
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.34 E-value=87 Score=28.56 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028084 88 RKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
|.|...+.-|+..||++.++|.+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~ 269 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKD 269 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445544444444
No 190
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.28 E-value=2.1e+02 Score=21.21 Aligned_cols=58 Identities=31% Similarity=0.499 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 54 IKEATELGKKARELKKAADTLHQE----ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~----~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+++.++..+.++++.....+.++ .+.|.-....+.+...++.+...+|.+.+.++..
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666777666666542 2222223455667777777777777777777665
No 191
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=32.10 E-value=87 Score=18.83 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 5 FPEYVVALATIVGSVLFSIF 24 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y 24 (214)
..+|..-+.+++|.++|.++
T Consensus 3 a~vY~~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 3 ALVYTFLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 35788889999999999876
No 192
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=32.01 E-value=1.8e+02 Score=20.26 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=32.2
Q ss_pred hhHHHHhhcccCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028084 32 LPLGLIFSFIRRP--KAVITRSQYIKEATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 32 LPi~lI~~f~~Rp--k~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
+|.+-|+....+- ++ +|.+-+.+.+..++.+.+++.+..-++-+..
T Consensus 3 ~p~~~i~ria~~~Gi~r-is~~a~~~l~~~~e~rl~~i~~~A~k~~~ha 50 (65)
T smart00803 3 LPKETIKDVAESLGIGN-LSDEAAKLLAEDVEYRIKEIVQEALKFMRHS 50 (65)
T ss_pred CCHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555544333 45 8888888888888988888888877776543
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.95 E-value=2.7e+02 Score=22.44 Aligned_cols=26 Identities=27% Similarity=0.481 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.-+.++..++++...|+.+.+.+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999998888875
No 194
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=31.91 E-value=3.1e+02 Score=23.01 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=28.9
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIY 153 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i~iil~ 153 (214)
++.||.+++.+.+++...-.++++.+.....+ -+=..+.+...++--++.-+..+|+-.|
T Consensus 143 ~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~-----------eLP~l~~~~~~~~~~~~~~~~~~ql~~~ 202 (216)
T cd07599 143 LSLKDEKQLAKLERKLEEAKEEYEALNELLKS-----------ELPKLLALADEFLPPLFKSFYYIQLNIY 202 (216)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555555555554443111 1112344455555555554444454444
No 195
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.68 E-value=1.2e+02 Score=29.48 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC----CcChHhHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERSG----SKGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~----~~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
.++.+.+.-++..|..++|+..+.+. ++..+..+++++++.|...|+++.+
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55556555555555556665543221 2223455666667777777766653
No 196
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.68 E-value=2.8e+02 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028084 94 VEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 94 l~~~~~~Le~~~~~le~~ 111 (214)
+-++...|+.+.+.++..
T Consensus 108 ~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 108 LLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.62 E-value=5.2e+02 Score=25.96 Aligned_cols=20 Identities=0% Similarity=0.097 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 88 RKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~ 107 (214)
..+++.|+++....++-++.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444443
No 198
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=31.50 E-value=73 Score=19.42 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 5 FPEYVVALATIVGSVLFSIF 24 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y 24 (214)
.++|..-+.+.+|.++|++|
T Consensus 3 al~Ytfll~~tlgiiFFAIf 22 (31)
T PRK11875 3 SFAYILILTLALVTLFFAIA 22 (31)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 35788888899999999876
No 199
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.42 E-value=1.9e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028084 90 NVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
-.++|+.++...|.+.+.+.+.+..|+
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl~g~ 123 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFLDGE 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-SSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344677777777777777776665544
No 200
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.34 E-value=1.8e+02 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
++.+++.....++++....+.
T Consensus 160 ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 201
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=31.32 E-value=2.4e+02 Score=21.55 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028084 125 TVLGYLAKLVLGILGFIVSVAWV 147 (214)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSl~w~ 147 (214)
.++=+++..++-+++++.++..|
T Consensus 215 ~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 215 MVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Confidence 66667888888888888888765
No 202
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=31.27 E-value=2.5e+02 Score=22.13 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHH
Q 028084 16 VGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVE 95 (214)
Q Consensus 16 iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~ 95 (214)
+.+++.+++|+.|...+- -++-.+.--|+|.-..++ ..+..-++.++.++
T Consensus 38 l~~vl~~~~~~~~~~~~~-Yi~l~~~lp~~P~~~~~~-----------------------------~~~~s~~~~l~~~~ 87 (118)
T PRK10697 38 IIVVLSIFFGLFVFTLVA-YIILSFALDPMPDNMAFG-----------------------------EQQPSSSELLDEVD 87 (118)
T ss_pred HHHHHHHHHhhchHHHHH-HHHHHHhccCCccccccc-----------------------------ccCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccCc
Q 028084 96 KELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 96 ~~~~~Le~~~~~le~~~~~~~ 116 (214)
++...+|++.++.|.-.+..+
T Consensus 88 ~~~~~~e~Rlr~mE~yVTS~~ 108 (118)
T PRK10697 88 RELAAGEQRLREMERYVTSDT 108 (118)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
No 203
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=31.19 E-value=4.9e+02 Score=25.09 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028084 8 YVVALATIVGSVLFSIFGG 26 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~g 26 (214)
.+.+++++++.+.+.++-.
T Consensus 133 ~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 133 IAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555555544443
No 204
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.14 E-value=87 Score=27.99 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCcChHhHH--HHHHHHHHHHHHHHHHHHHHH
Q 028084 46 AVITRSQYIKEATELGKKARELKKAADTLHQ--EERSGSKGRKWRK--NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 46 ~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~--~~~~~~~s~k~rr--~l~~l~~~~~~Le~~~~~le~ 110 (214)
+ +.+++=+..+.+++ .|-...+..++ |.|-...+.+||+ .+.++.++++.|+++.++|..
T Consensus 48 ~-~aas~~~rKr~RL~----HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~ 111 (292)
T KOG4005|consen 48 N-MAASQPKRKRRRLD----HLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQN 111 (292)
T ss_pred c-ccccchHHHHHhhc----ccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 205
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=31.14 E-value=1.4e+02 Score=24.12 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHh-hhccCCcChH--hH----HHHHHHHHHHHHHHHHHHHHHH
Q 028084 61 GKKARELKKAADTLHQ-EERSGSKGRK--WR----KNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 61 ~~~~~~l~e~~~~l~~-~~~~~~~s~k--~r----r~l~~l~~~~~~Le~~~~~le~ 110 (214)
.+.+-.+.++-|.|++ .|.++.+..+ .| ++-..+++++.+|.++...+..
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777788876 4454443321 11 1223355555555555444433
No 206
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.03 E-value=1.8e+02 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CCcChHhHHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERS-GSKGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~-~~~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
.+.+++++...+.++..++++-..- |-++.+.|.+...|+-..+.||+..+
T Consensus 216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888887777764332 33666777777777766666665443
No 207
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=30.96 E-value=54 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 028084 180 TAAFAFFCFYLLLAVIAGAM 199 (214)
Q Consensus 180 ~i~~~~~~~Yll~~s~~G~~ 199 (214)
.++||++++|.+++++.|.-
T Consensus 35 l~~fa~l~ly~~~~ai~~~G 54 (85)
T PF13150_consen 35 LVLFAALCLYMTVSAIYDIG 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999998874
No 208
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.95 E-value=2.2e+02 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 028084 56 EATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
.++++...-+-..+.++.|+.+.
T Consensus 49 kKm~lr~e~~~vK~~~~~i~ek~ 71 (130)
T KOG4538|consen 49 KKMELRAEKDMVKRVQDNIREKQ 71 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544555566666666543
No 209
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=30.89 E-value=2.4e+02 Score=25.77 Aligned_cols=16 Identities=56% Similarity=0.704 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028084 60 LGKKARELKKAADTLH 75 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~ 75 (214)
.-++++++++..+.+.
T Consensus 198 ~~~~~De~Rkeade~h 213 (294)
T COG1340 198 LFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 210
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.89 E-value=2.4e+02 Score=24.44 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 58 TELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
..+++|+..-+|..+-|+++. .-+..|=..+-.|.+..+.+|+.+..++.
T Consensus 64 ~ai~~Rs~sQrEvn~LLqRK~---sWs~~DleRFT~Lyr~dH~~e~~e~~ak~ 113 (207)
T PF05546_consen 64 DAIQQRSSSQREVNELLQRKH---SWSPADLERFTELYRNDHENEQAEEEAKE 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCChHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 344555555556666565432 12233333333444444444444433333
No 211
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=30.79 E-value=5e+02 Score=25.12 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 8 YVVALATIVGSVLFSIF 24 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y 24 (214)
.+.+.+..++.+.++++
T Consensus 141 ~~~~~~~~~~~~~~l~~ 157 (574)
T PRK11160 141 LVAALVVILVLTIGLSF 157 (574)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444554444444
No 212
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.79 E-value=2.6e+02 Score=26.30 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 8 YVVALATIVGSVLFSIF 24 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y 24 (214)
|+.+.++.+||++-+=+
T Consensus 44 f~f~~iss~gwff~i~~ 60 (401)
T PF06785_consen 44 FVFSIISSLGWFFAIGR 60 (401)
T ss_pred eehHHHHHhHHHHHhhH
Confidence 55667778888765433
No 213
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.52 E-value=1e+02 Score=21.13 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 125 TVLGYLAKLVLGILGFIVSVAWVAHIV 151 (214)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSl~w~i~ii 151 (214)
+|.-++.--+.+.++++.++..++|++
T Consensus 29 ~p~~~Ii~gii~~~~fV~~Lv~lV~~v 55 (56)
T PF11174_consen 29 SPVHFIIVGIILAALFVAGLVLLVNLV 55 (56)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666667777778888887765
No 214
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=30.40 E-value=2.1e+02 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~ 107 (214)
++++.+.+...++.+.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~ 72 (265)
T TIGR00999 55 EFESAEYALEEAQAEVQA 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334434444444443333
No 215
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.38 E-value=57 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 028084 3 TTFPEYVVALATIVGSVLFSIFG 25 (214)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfi~y~ 25 (214)
.|..-|++|...++|.++|.-|+
T Consensus 48 lSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677999999999977666555
No 216
>PRK00106 hypothetical protein; Provisional
Probab=30.37 E-value=2.9e+02 Score=27.24 Aligned_cols=9 Identities=56% Similarity=0.944 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 028084 15 IVGSVLFSI 23 (214)
Q Consensus 15 ~iG~~lfi~ 23 (214)
.+|+++..+
T Consensus 16 ~~~~~~~~~ 24 (535)
T PRK00106 16 VIGYVLISI 24 (535)
T ss_pred HHHHHHHHH
Confidence 345554443
No 217
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=30.35 E-value=4.4e+02 Score=24.27 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 028084 137 ILGFIVSVAWVAHIV 151 (214)
Q Consensus 137 ii~lllSl~w~i~ii 151 (214)
|+.++++-+|++-|+
T Consensus 140 ~ls~lfg~iwVlPiF 154 (360)
T KOG3966|consen 140 ILSLLFGYIWVLPIF 154 (360)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666655
No 218
>KOG0380 consensus Sterol O-acyltransferase/Diacylglycerol O-acyltransferase [Lipid transport and metabolism]
Probab=30.34 E-value=4e+02 Score=26.30 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=60.8
Q ss_pred HHhcccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHH
Q 028084 109 EEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCF 188 (214)
Q Consensus 109 e~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~ 188 (214)
+.+|++.... .|- -++.+.+++++++.+..+-.=++++=.+.+..+++.....--....+-..+| + ++.-++.|
T Consensus 294 q~~yPRt~~i--R~~-yvl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~~~~~~~~~ll~l~iP--~-il~~Ll~F 367 (523)
T KOG0380|consen 294 QLSYPRTARI--RWR-YVLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFSDASRLIERLLKLMIP--G-ILIWLLFF 367 (523)
T ss_pred cccCCccchh--hHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccchHHHHHHHHHHHhhh--H-HHHHHHHH
Confidence 3446665542 333 4777889999999999999999999999999887655344445555566788 4 45555667
Q ss_pred HHHHHH----HHhHHHhhhhhh
Q 028084 189 YLLLAV----IAGAMMLGLRLV 206 (214)
Q Consensus 189 Yll~~s----~~G~~~~GiRf~ 206 (214)
|+++=+ ++=..++|=|-+
T Consensus 368 Y~ifh~~LNa~AEl~rFaDR~F 389 (523)
T KOG0380|consen 368 YLIFHCWLNAVAELTRFADREF 389 (523)
T ss_pred HHHHHHHHHHHHHHHHhhHHhH
Confidence 766543 344555555543
No 219
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=30.29 E-value=2.7e+02 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=11.5
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 028084 86 KWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~ 104 (214)
.-+++++.+++.++.+|++
T Consensus 88 ~~~~~~~~~e~Rl~~mE~y 106 (121)
T TIGR02978 88 EVKREFRDLERRLRNMERY 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665
No 220
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=29.70 E-value=3.9e+02 Score=23.62 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028084 52 QYIKEATELGKKARELKK 69 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e 69 (214)
+|+..++++.++..+.+.
T Consensus 123 ~~kk~R~elKk~~~dt~k 140 (231)
T cd07643 123 EYKKARQEIKKKSSDTIR 140 (231)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 344445555544444433
No 221
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=29.64 E-value=5.2e+02 Score=24.94 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=5.4
Q ss_pred hhhhhHHHHhh
Q 028084 29 IACLPLGLIFS 39 (214)
Q Consensus 29 laaLPi~lI~~ 39 (214)
++.+|+-++-.
T Consensus 144 l~~~~l~~~~~ 154 (569)
T PRK10789 144 LLPMPVMAIMI 154 (569)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 222
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.63 E-value=2.4e+02 Score=27.53 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028084 89 KNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.+.+++++..||.+.+.|+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777665
No 223
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=29.51 E-value=79 Score=20.51 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.4
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028084 123 ALTVLGY---LAKLVLGILGFIVSVAWVAHIV 151 (214)
Q Consensus 123 ~~~~l~~---~~kLl~Gii~lllSl~w~i~ii 151 (214)
.|.++.| |.-++.|++...+.-+|.+|+.
T Consensus 8 iWHilGY~AmPvIil~GF~~Va~~si~lLs~~ 39 (42)
T TIGR02808 8 IWHVLGYGAMPFIILSGFVAVAVTSILLLNAF 39 (42)
T ss_pred HHHHhcccccchHHhhhhHHHHHHHHHHHHhh
Confidence 3566666 7889999999999999998863
No 224
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.37 E-value=2e+02 Score=29.05 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-Cc---C--hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028084 59 ELGKKARELKKAADTLHQEERSG-SK---G--RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~~~~~~-~~---s--~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
.+....++|+++-+.++...... .. + ....+++..++.++..++.+.++|.+.|....
T Consensus 570 ~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks 633 (722)
T PF05557_consen 570 ALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKS 633 (722)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446666666665432211 10 1 12456889999999999999999999976653
No 225
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.36 E-value=1.8e+02 Score=28.94 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.5
Q ss_pred HHHHHHHhcccCcc
Q 028084 104 DVKLLEEMYPQGEK 117 (214)
Q Consensus 104 ~~~~le~~~~~~~~ 117 (214)
..++.++....++|
T Consensus 62 ~~~~~~~~~~~~~g 75 (567)
T PLN03086 62 ADQQMQESLQAGRG 75 (567)
T ss_pred HHHHHHHHHHcCCC
Confidence 34445555434444
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.18 E-value=2.4e+02 Score=24.61 Aligned_cols=10 Identities=50% Similarity=0.544 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 028084 52 QYIKEATELG 61 (214)
Q Consensus 52 ~~~~~~~~l~ 61 (214)
||.+++..|.
T Consensus 36 e~~kE~~~L~ 45 (230)
T PF10146_consen 36 EYRKEMEELL 45 (230)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 227
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.11 E-value=2.5e+02 Score=25.84 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 53 YIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
+++.....+.+.+.++-.++.+++
T Consensus 18 ~sAlhqK~~aKtdairiL~QdLEk 41 (389)
T KOG4687|consen 18 FSALHQKCGAKTDAIRILGQDLEK 41 (389)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444555666666666666664
No 228
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.00 E-value=3.5e+02 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 91 VKSVEKELLQLEEDVKL 107 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~ 107 (214)
...+++++.+|+.+.+.
T Consensus 155 ~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 155 REELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 229
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=28.96 E-value=2.2e+02 Score=20.35 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~-~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+|..-|...+.+++.-- .+.-+..+.|+.....|-.| +-.+++.=+++...++.+-..|+.
T Consensus 6 lT~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDls--ENaeY~aAke~q~~le~rI~~Le~ 67 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLS--ENAEYHAAKERQAFLEARIRELEE 67 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSST--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcc--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888633 35566777777665555443 223444444444444444444443
No 230
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.90 E-value=2.8e+02 Score=22.95 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 028084 56 EATELGKKARELKKAADTLHQEERS 80 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~ 80 (214)
+-.++..++.+.++..+.++..++.
T Consensus 35 EL~evk~~v~~~I~evD~Le~~er~ 59 (159)
T PF05384_consen 35 ELEEVKEEVSEVIEEVDKLEKRERQ 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777765544
No 231
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=28.78 E-value=1.8e+02 Score=19.44 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
++.+++.+....+...++++.+..+++++
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~ 32 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLES 32 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788778888777777775
No 232
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.70 E-value=2.1e+02 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~ 76 (214)
+-++++++.+++++..+++++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~ 87 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKA 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544443
No 233
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=28.28 E-value=5.9e+02 Score=25.17 Aligned_cols=127 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028084 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSK 83 (214)
Q Consensus 4 sf~~f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~ 83 (214)
++...++.+.++++.+..+++-+.-++.+++-.+--+.-=+.. ....+.+..++..+...+..+.-.+.-.
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 332 (694)
T TIGR03375 262 ATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLL---------LQRPLSRLAEESMRESAQRNAVLVESLS 332 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVA 148 (214)
Q Consensus 84 s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i 148 (214)
+.+.-|..+.-++.....++..++...+ .... .........+..++..+.+++.+.
T Consensus 333 gi~~ik~~~~e~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~il~ 388 (694)
T TIGR03375 333 GLETIKALNAEGRFQRRWEQTVAALARS--GLKS-------RFLSNLATNFAQFIQQLVSVAIVV 388 (694)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
No 234
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.24 E-value=2.6e+02 Score=20.99 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.++.++++.++.+...|.++.+.|...
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999998877654
No 235
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=28.04 E-value=64 Score=29.82 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=24.1
Q ss_pred hhhhhHHHHhhcccCCCcccCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 028084 29 IACLPLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLH 75 (214)
Q Consensus 29 laaLPi~lI~~f~~Rpk~~is~~~~~~-~~~~l~~~~~~l~e~~~~l~ 75 (214)
++|+|+...+. |+.+.+-+ .+.+++++-.++.+...+.+
T Consensus 52 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (324)
T PLN00171 52 FSAIPFTAVKA--------IANSSLGESLQRRLEETKKAAVEESSAFK 91 (324)
T ss_pred eecccHHHHHH--------HhcCcHHHHHHHHHHHhhHHHHHhHHHHH
Confidence 57999999998 66666644 45555555444444444333
No 236
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.93 E-value=2.6e+02 Score=23.95 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEED 104 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~ 104 (214)
.+..++++++.++.|++.
T Consensus 166 aqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 166 AQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555544
No 237
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=27.92 E-value=1.7e+02 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHH
Q 028084 64 ARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDV 105 (214)
Q Consensus 64 ~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~ 105 (214)
-+++.-+-++||+++++. ++|+.+..+.++|..+|-+++
T Consensus 162 m~~lqPel~~Iq~Kyk~~---~~d~~~~~k~q~e~~~Lykk~ 200 (357)
T PRK02201 162 QEELQGKKAKIDAKYKDY---KKDKQMKQRKQQEIQELYKKH 200 (357)
T ss_pred HHHhhHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHc
Confidence 335555556666666422 245555666666666665553
No 238
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=27.83 E-value=1.5e+02 Score=18.19 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028084 54 IKEATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
..++.++.++.++|...-+++++.
T Consensus 7 ~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 7 ISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 446666777777777666666543
No 239
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=27.68 E-value=3.8e+02 Score=22.72 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCcChHhHHHHHHHHH
Q 028084 52 QYIKEATELGKKARELKKAADTLHQEERS--GSKGRKWRKNVKSVEK 96 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~~~~~--~~~s~k~rr~l~~l~~ 96 (214)
|+...|..++.=-..+.|+...+-+.+.- ..+|..+|-|.+.|+.
T Consensus 106 Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQs 152 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQS 152 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHH
Confidence 44444444553344455555444443332 4588888887775443
No 240
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.66 E-value=1.5e+02 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 028084 49 TRSQYIKEATELGKKARELK 68 (214)
Q Consensus 49 s~~~~~~~~~~l~~~~~~l~ 68 (214)
+.+++.+.+.++.+.-.++.
T Consensus 202 d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 241
>PF14182 YgaB: YgaB-like protein
Probab=27.41 E-value=1.9e+02 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.445 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQG 115 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~~ 115 (214)
+..++..++.+.+..+++.+.+...|.++
T Consensus 38 ~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~Q 66 (79)
T PF14182_consen 38 REAELHSIQEEISQMKKELKEIQRVFEKQ 66 (79)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777665444
No 242
>KOG4136 consensus Predicted mitochondrial cholesterol transporter [Signal transduction mechanisms; Lipid transport and metabolism]
Probab=27.37 E-value=1.9e+02 Score=24.78 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 028084 180 TAAFAFFCFYLLLA 193 (214)
Q Consensus 180 ~i~~~~~~~Yll~~ 193 (214)
.+++++++-|...|
T Consensus 68 li~fsl~~~~vy~~ 81 (198)
T KOG4136|consen 68 LILFSLFIQYVYYG 81 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 243
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=27.26 E-value=1e+02 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.-|.|.+-++...++|+++...||..
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777765
No 244
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=27.25 E-value=1.1e+02 Score=22.82 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhH
Q 028084 129 YLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLN 165 (214)
Q Consensus 129 ~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN 165 (214)
.+++.+++++..++ .+|+..-++..+|+.|+.|++=
T Consensus 17 ~~~~~~~~ii~~iv-~l~v~~~vl~aIn~iPll~~ll 52 (90)
T PF14159_consen 17 RPLLTIGAIIAVIV-ALWVSAAVLDAINSIPLLPGLL 52 (90)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCcchHHHH
Confidence 45666666555555 4688888999999977776653
No 245
>PLN02777 photosystem I P subunit (PSI-P)
Probab=27.22 E-value=1.8e+02 Score=24.37 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 028084 136 GILGFIVSVAWVAHIVIYLLINPPLHPFLNEV 167 (214)
Q Consensus 136 Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~ 167 (214)
|+++..+-.+|+..-++..||+.|+.|.+=.+
T Consensus 98 ~l~~aaiVal~v~~~VL~AId~lPLlP~lLEL 129 (167)
T PLN02777 98 SLAFAGVVALWGSAGMISAIDRLPLVPGVLEL 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 55555566678889999999998887776544
No 246
>CHL00031 psbT photosystem II protein T
Probab=27.12 E-value=78 Score=19.57 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 5 FPEYVVALATIVGSVLFSIF 24 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y 24 (214)
..+|..-+.+++|.++|++|
T Consensus 3 alvYtfll~~tlgilFFAI~ 22 (33)
T CHL00031 3 ALVYTFLLVSTLGIIFFAIF 22 (33)
T ss_pred hhHHHHHHHHHHHHHHHhhe
Confidence 35788888899999999875
No 247
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=26.91 E-value=2.4e+02 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
++..++..-...++....++.
T Consensus 60 ~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 60 ELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333
No 248
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.90 E-value=1.6e+02 Score=27.19 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.++|+...++.|-++|||+.-+..-.
T Consensus 62 rdYqrq~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 62 RDYQRQVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678999999999999999997776544
No 249
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=26.84 E-value=5.5e+02 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 57 ATELGKKARELKKAADTLH 75 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~ 75 (214)
..+......|..+--+.++
T Consensus 189 ~~~~~~~~~e~~~g~~~ik 207 (529)
T TIGR02868 189 RSQLYQQLTDALDGAADLV 207 (529)
T ss_pred HHHHHHHHHHHhccHHHHH
Confidence 3334444444444444444
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.76 E-value=3e+02 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.448 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le 109 (214)
.+.++...+..+.+...|.+.++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444333
No 251
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.75 E-value=1.9e+02 Score=26.42 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
-+++.+++++++..++.+.+.++.
T Consensus 39 l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 39 LETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555444444
No 252
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=26.67 E-value=4.1e+02 Score=22.80 Aligned_cols=70 Identities=16% Similarity=0.307 Sum_probs=40.4
Q ss_pred hhhhhhHHHHhhcccCCCcccCHHH-HHHHHHHHHHHHHHHHH--HHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHH
Q 028084 28 GIACLPLGLIFSFIRRPKAVITRSQ-YIKEATELGKKARELKK--AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 28 GlaaLPi~lI~~f~~Rpk~~is~~~-~~~~~~~l~~~~~~l~e--~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~ 104 (214)
|+-+++++-+....+-+.- ++| -++||...+.-++.++| ..|+||..- .-+-+.+++.+.+.++|+
T Consensus 21 ~m~~~aL~IL~~AmsstTG---A~~~~K~EKaAyga~aEAlrDd~~~R~IK~~v--------ne~~L~~L~~el~~~kRk 89 (195)
T PF01616_consen 21 GMKSVALGILDNAMSSTTG---ATEAQKNEKAAYGAAAEALRDDERTRQIKVHV--------NEQILPKLKHELRKLKRK 89 (195)
T ss_pred CchhhhHHHHHHhccCCcc---CchhhhHHHHHHHHHHHHHcCcHHHHHHHHHH--------hHHHHHHHHHHHHHHHHH
Confidence 6777888988888776632 223 24577777766666664 234444211 123455566666666655
Q ss_pred HHHH
Q 028084 105 VKLL 108 (214)
Q Consensus 105 ~~~l 108 (214)
...+
T Consensus 90 ~~il 93 (195)
T PF01616_consen 90 RRIL 93 (195)
T ss_pred HHHH
Confidence 4443
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.35 E-value=2.9e+02 Score=26.90 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028084 56 EATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
....+.+--+++.+.|++|+++
T Consensus 250 dle~Lq~aEqsl~dlQk~Leka 271 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKA 271 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666777777653
No 254
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.34 E-value=2.1e+02 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le 109 (214)
+..++++|+..++.+++.+.
T Consensus 96 e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 96 ENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 255
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.18 E-value=4.3e+02 Score=22.82 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cC--hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KG--RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s--~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++....++-..++.|.+.+.+..+++++-.++.+ .. -+-.+++.+.+.+...++.+.+.++..
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443434334445555566666666665332222 11 245567777777888887777777665
No 256
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.11 E-value=2.3e+02 Score=25.65 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hh---ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQ-EE---RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~-~~---~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+..|.++-+.+.|.-++|-+ +. .++.+.++.+-..+.|+++.+..-+....++.+
T Consensus 237 Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 237 LKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555565555553 11 111122344444555555555555555555543
No 257
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.91 E-value=3.7e+02 Score=21.94 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcc---CC-cChHhHHHHHHHHHHHHHHHH--HHHHHHHhcc
Q 028084 66 ELKKAADTLHQEERS---GS-KGRKWRKNVKSVEKELLQLEE--DVKLLEEMYP 113 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~---~~-~s~k~rr~l~~l~~~~~~Le~--~~~~le~~~~ 113 (214)
++..+..+|+..... +. +-++-.+|+..|+.+..++.. |.+.-++-++
T Consensus 69 qL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 69 QLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444555543333 22 346788899999998887744 3444444333
No 258
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.91 E-value=3e+02 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028084 60 LGKKARELKKAADTLHQ 76 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~ 76 (214)
+.++=++++++.++|++
T Consensus 78 l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 78 LISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444455543
No 259
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=25.86 E-value=1.2e+02 Score=20.28 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 028084 5 FPEYVVALATIVGSVLFSIFGGVGIAC 31 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y~gvGlaa 31 (214)
..+|.++-+....|+.|.+..++|++.
T Consensus 16 ~ni~Lm~~L~~~twirf~iWl~iGl~i 42 (51)
T PF13906_consen 16 INIYLMAQLSALTWIRFGIWLAIGLVI 42 (51)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 457899999999999999999888763
No 260
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.80 E-value=2e+02 Score=29.34 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028084 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+.|..++..+.++..+||.+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666777777665
No 261
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.75 E-value=4.1e+02 Score=25.60 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---------hhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 56 EATELGKKARELKKAADTLHQ---------EERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~---------~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
-++++.++++.+..+-+-||. ..|..+. -.++++...++....+.+...+++..
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp---~~~qLe~v~kdi~~a~keL~~m~~~i 273 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRP---SKKQLETVQKELETARKELKKMEEYI 273 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655554 1111122 22466666666666666666666653
No 262
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=25.65 E-value=2.7e+02 Score=20.37 Aligned_cols=61 Identities=13% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC--cC---hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 54 IKEATELGKKARELKKAADTLHQEERSGS--KG---RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~~~--~s---~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
.+...++.+.++++.+.-+.++....... .+ +--+...+++.++...+-.++..++..|.+
T Consensus 49 ~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 49 ERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554322110 11 122335566777777777777777776543
No 263
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=1.7e+02 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028084 53 YIKEATELGKKARELKKAADTLHQEERS 80 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~~~~~ 80 (214)
+...+..|+++.+.|.|..++.+.+.++
T Consensus 238 L~~~~~~L~kqie~L~qeie~~~~~~r~ 265 (439)
T KOG2911|consen 238 LIQARAKLAKQIEFLEQEIEKSKEKLRQ 265 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888999999888888876664
No 264
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=25.63 E-value=1.8e+02 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 028084 51 SQYIKEATELG 61 (214)
Q Consensus 51 ~~~~~~~~~l~ 61 (214)
+|+.|.+.+++
T Consensus 161 eE~eEVe~el~ 171 (294)
T KOG2881|consen 161 EELEEVEAELA 171 (294)
T ss_pred hhHHHHHHHHH
Confidence 34444444444
No 265
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.62 E-value=1.3e+02 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHh
Q 028084 15 IVGSVLFSIFGGVGIACLPLGLIF 38 (214)
Q Consensus 15 ~iG~~lfi~y~gvGlaaLPi~lI~ 38 (214)
.+=+.+.+.||.+.+..+=.++..
T Consensus 39 ~lP~~~Lv~fG~Ysl~~lgy~v~t 62 (91)
T PF08285_consen 39 YLPFYALVSFGCYSLFTLGYGVAT 62 (91)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhc
Confidence 344566678888888887776653
No 266
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.60 E-value=3.2e+02 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=5.8
Q ss_pred hhhhhhHHHHhh
Q 028084 28 GIACLPLGLIFS 39 (214)
Q Consensus 28 GlaaLPi~lI~~ 39 (214)
-.|.+-+-||-+
T Consensus 23 ~i~~FiILLIi~ 34 (121)
T PF10669_consen 23 FIVVFIILLIIT 34 (121)
T ss_pred HHHHHHHHHHHH
Confidence 334444555554
No 267
>PRK13698 plasmid-partitioning protein; Provisional
Probab=25.23 E-value=2.3e+02 Score=26.20 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=36.6
Q ss_pred hhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028084 25 GGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 25 ~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
-..-++.||-+++..|++ |.. +|..........+++..+.+.+..+++-+++
T Consensus 195 n~Lrla~LP~~vi~~~~~-p~~-Ls~gharaL~~ll~~~~~~~~~~a~~i~~q~ 246 (323)
T PRK13698 195 RCINTAKLPKSVVALFAH-PGE-LSARSGEALQKAFTDKEELLKQQTSNLHEQK 246 (323)
T ss_pred HHHHHHcCCHHHHHHhhc-cCC-CChhHHHHHHHHhhhCHHHHHHHHHHHHHhh
Confidence 345678899999999866 656 8888777766666655566666666666543
No 268
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.22 E-value=2.5e+02 Score=28.26 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
..++|+..+..+++.|..-.|.+...
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~ 684 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMK 684 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556666666666665554444433
No 269
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=25.19 E-value=1.3e+02 Score=29.94 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcChHhHHH---------------HHHHHHHHHHHHHHHHHHHHh
Q 028084 61 GKKARELKKAADTLHQEERSGSKGRKWRKN---------------VKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 61 ~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~---------------l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+.+-+...+|+|++.+ ....|||-|+| -+.|++|--+|.++...++..
T Consensus 274 ~~d~kv~krqQRmIKNRe-sA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRE-SACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred ccCHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 334445566667776522 12334444433 234555556666665555554
No 270
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=25.15 E-value=2.2e+02 Score=22.94 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=20.9
Q ss_pred HhhcccCCCcccCHHHH-----HHHHHHHHHHH-HHHHHHHHHHHh
Q 028084 37 IFSFIRRPKAVITRSQY-----IKEATELGKKA-RELKKAADTLHQ 76 (214)
Q Consensus 37 I~~f~~Rpk~~is~~~~-----~~~~~~l~~~~-~~l~e~~~~l~~ 76 (214)
-..|-.||. ||.+|+ +|.|.++--+. +.+.+.-+++++
T Consensus 78 Rdef~YkP~--lT~~QF~s~gFAErKi~i~~Di~~~v~~~h~el~r 121 (131)
T PF15007_consen 78 RDEFNYKPS--LTKAQFFSKGFAERKIIIVCDILNLVKKKHKELQR 121 (131)
T ss_pred HHHhCCCCC--CCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666663 899986 66666654333 333334444444
No 271
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.07 E-value=4.1e+02 Score=23.68 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 028084 101 LEEDVKLLEEM 111 (214)
Q Consensus 101 Le~~~~~le~~ 111 (214)
|+++.++|++.
T Consensus 96 l~~EN~rLr~L 106 (283)
T TIGR00219 96 LKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 272
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.70 E-value=3.1e+02 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQG 115 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~~ 115 (214)
.-.+++....++..|+++.+++.+...-.
T Consensus 81 ~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 81 ELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33467778888888888888888874433
No 273
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.51 E-value=3.5e+02 Score=21.25 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
...+...+++++..|+.++..+-+.|..
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3346667788888888887777666443
No 274
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.39 E-value=2.6e+02 Score=19.70 Aligned_cols=54 Identities=13% Similarity=0.340 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHHH
Q 028084 51 SQYIKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~----~~~s~k~rr~l~~l~~~~~~Le~~ 104 (214)
++|-++-.++....+++.+.-++|+..... .......+++++.+..+...+-.+
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~ 60 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQK 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 455555666666655666666666553322 111134666776655555444433
No 275
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=24.32 E-value=3.4e+02 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~ 107 (214)
|..++.+-++++..-.++++.
T Consensus 137 de~KL~kae~el~~Ak~~Ye~ 157 (211)
T cd07588 137 DDQKLTKAEEELQQAKKVYEE 157 (211)
T ss_pred cHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 276
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=24.25 E-value=2.6e+02 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLE 102 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le 102 (214)
.++..+.+..+...+-
T Consensus 66 ~~~aw~~~~~e~~~~a 81 (87)
T smart00055 66 LSKSWEVLLSETDALA 81 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 277
>PLN02764 glycosyltransferase family protein
Probab=24.22 E-value=2.2e+02 Score=27.32 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELG----KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 48 is~~~~~~~~~~l~----~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~ 103 (214)
+++++..+.-.++- ++.++.++..++++++-++++.|. +++++|.++...+.+
T Consensus 392 ~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~---~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 392 FSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLT---GYVDNFIESLQDLVS 448 (453)
T ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHhcc
Confidence 56666655322332 345666677777766555444333 366666666655544
No 278
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=23.93 E-value=3.8e+02 Score=21.46 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKAR-ELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~-~l~e~~~~l~~~~~~~~~s-----~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+|..-+++.+.+++..-. +--+..++++...+.|.++ ...+.+...+.+..+.|+++...++.
T Consensus 7 lt~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 7 MTQEGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 777767666666663322 2223444444433333322 11234445556666777766666554
No 279
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=23.90 E-value=3.9e+02 Score=22.09 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028084 59 ELGKKARELKKAADTLHQ 76 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~ 76 (214)
+-+++..++-.+++.++.
T Consensus 52 ~f~~~~~~lq~~~~el~~ 69 (170)
T COG2825 52 EFKKRQKELQKMQKELKA 69 (170)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 280
>PRK10780 periplasmic chaperone; Provisional
Probab=23.83 E-value=3.9e+02 Score=21.55 Aligned_cols=9 Identities=11% Similarity=-0.067 Sum_probs=4.1
Q ss_pred CCcChHhHH
Q 028084 81 GSKGRKWRK 89 (214)
Q Consensus 81 ~~~s~k~rr 89 (214)
+.+|...|+
T Consensus 78 ~~ms~~~~~ 86 (165)
T PRK10780 78 STMKGSDRT 86 (165)
T ss_pred cccCHHHHH
Confidence 345654443
No 281
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=23.70 E-value=1.7e+02 Score=20.73 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHH
Q 028084 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKEL 98 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~ 98 (214)
+++++..+|-++.+..+.+...+.+-..||++-
T Consensus 2 e~i~RINeLa~K~K~~gLT~eE~~Eq~~LR~eY 34 (65)
T PF05979_consen 2 EKIDRINELAKKSKEEGLTEEEKAEQAELRQEY 34 (65)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 566677777777666777766666666666553
No 282
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=23.57 E-value=5.4e+02 Score=23.65 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028084 94 VEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 94 l~~~~~~Le~~~~~le~~ 111 (214)
+.+++..++++++.....
T Consensus 128 l~~~l~~~~~~y~~~d~~ 145 (332)
T TIGR01541 128 LNEALAELHAYYAAEDAL 145 (332)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665554
No 283
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=23.56 E-value=4.2e+02 Score=21.80 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=47.4
Q ss_pred hhcccCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 028084 38 FSFIRRP-KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVE----KELLQLEEDVKLLEEMY 112 (214)
Q Consensus 38 ~~f~~Rp-k~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~----~~~~~Le~~~~~le~~~ 112 (214)
.++.+-+ ++ ++.+|+.+.++.++++.-+.-=+-..+++ --+.|.|-||=++.++ +......+..+.++.+-
T Consensus 59 S~YL~~~~~~-i~pde~~~~~~~IA~eLT~~dii~~di~~---yi~~S~kLKrfik~yk~nn~k~~kki~~~~k~Lkia~ 134 (147)
T PF04787_consen 59 SDYLNMKTRP-ITPDEYKKYSSAIAKELTNYDIIDDDIDD---YIRSSKKLKRFIKLYKTNNNKQNKKIKEAAKKLKIAL 134 (147)
T ss_pred hhhhcCCCcc-CCHHHHHHHHHHHHHHHHHHHHHHhhHHH---HhcccHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 3455544 55 99999999888887544333333333332 1235677788777774 67777888888888884
Q ss_pred ccCc
Q 028084 113 PQGE 116 (214)
Q Consensus 113 ~~~~ 116 (214)
.++-
T Consensus 135 ~~gi 138 (147)
T PF04787_consen 135 SRGI 138 (147)
T ss_pred cCCC
Confidence 4443
No 284
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.48 E-value=4.9e+02 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028084 53 YIKEATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
...++.+....|+++.++...+++++
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~ 46 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKY 46 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888887644
No 285
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=23.37 E-value=1.7e+02 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATELGKKARELKKAADTLH 75 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~ 75 (214)
++-+.+.+++.+++++.+++.|+-++-+
T Consensus 204 V~td~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 204 VDTDKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444444
No 286
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=23.34 E-value=4e+02 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 028084 8 YVVALATIVGSVLFSIFGGVGIACLPLGLI 37 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI 37 (214)
++=++..+.|..+|++.|+.=+..+|+-|=
T Consensus 82 ~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ 111 (137)
T PF04281_consen 82 AVKSLFSFSGKALWIVTTSALLLGVPLALE 111 (137)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999998763
No 287
>PRK02463 OxaA-like protein precursor; Provisional
Probab=23.34 E-value=4.4e+02 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhHH
Q 028084 183 FAFFCFYLLLAVIAGAM 199 (214)
Q Consensus 183 ~~~~~~Yll~~s~~G~~ 199 (214)
=+.+.+|.+.+.+-++.
T Consensus 226 PagL~lYW~~snlfsi~ 242 (307)
T PRK02463 226 PAGVGLYWLVGGFFSII 242 (307)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467777777666543
No 288
>PRK11637 AmiB activator; Provisional
Probab=23.19 E-value=3.2e+02 Score=25.52 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 028084 97 ELLQLEEDVKL 107 (214)
Q Consensus 97 ~~~~Le~~~~~ 107 (214)
++..|+++.+.
T Consensus 234 ~l~~l~~~~~~ 244 (428)
T PRK11637 234 QLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 289
>PHA01815 hypothetical protein
Probab=23.16 E-value=95 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHh
Q 028084 2 RTTFPEYVVALATIVGSVLFSIFG 25 (214)
Q Consensus 2 ~vsf~~f~i~~l~~iG~~lfi~y~ 25 (214)
||||.+-...+..+-=.++.++|.
T Consensus 28 rvsfgvlftt~iifyiifl~viya 51 (55)
T PHA01815 28 RVSFGVLFTTLIIFYIIFLMVIYA 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444333333444443
No 290
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.07 E-value=3.6e+02 Score=20.83 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=16.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+|...|++.+.-.-..|++|.+.+...
T Consensus 43 Rk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 43 RKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665666666666665554
No 291
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.06 E-value=2e+02 Score=28.31 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccCc
Q 028084 94 VEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 94 l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
++.++..|..|...++..|+...
T Consensus 466 Le~~~~~l~~Rl~~i~~e~~~~~ 488 (536)
T KOG0500|consen 466 LENEVVLLQLRLARILDEYHSSQ 488 (536)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 67777777777777766655443
No 292
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=23.06 E-value=2e+02 Score=24.78 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred hcccCCCcccCHHHHHHHHHHHHH---HHHHHHHHH-HHHHhhhccCCcChHhHHHHHHH-HHHHHHHHHHHHHHHHhcc
Q 028084 39 SFIRRPKAVITRSQYIKEATELGK---KARELKKAA-DTLHQEERSGSKGRKWRKNVKSV-EKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 39 ~f~~Rpk~~is~~~~~~~~~~l~~---~~~~l~e~~-~~l~~~~~~~~~s~k~rr~l~~l-~~~~~~Le~~~~~le~~~~ 113 (214)
+-+.+|++.+.++++++..+++-. |.++.=|.+ +.|-+.+.---++..+|..++.. .+|+.-|..=.+++.+.
T Consensus 20 ~~~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~~~R~~l~em~d~E~~HL~~f~~~l~e~-- 97 (204)
T COG2941 20 GSPTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSPEPRIQLKEMADEEIDHLAWFEQRLLEL-- 97 (204)
T ss_pred CCCCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 567778777888888774444432 222222322 22322111111334555544432 22333333323333222
Q ss_pred cCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 114 QGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVA 148 (214)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i 148 (214)
+.+ .| ..+|+.+-..+.+|-...+++-=|-.
T Consensus 98 --~vR-Ps-ll~P~W~~~~FalGA~a~Llgdk~am 128 (204)
T COG2941 98 --GVR-PS-LLNPLWYAAAFALGAGAGLLGDKAAM 128 (204)
T ss_pred --cCC-cc-HHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 211 12 23788888888888888888766543
No 293
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=23.05 E-value=2.2e+02 Score=18.46 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVK 106 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~ 106 (214)
++..|++.++.|+++++
T Consensus 23 EV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 23 EVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 294
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=23.03 E-value=3.6e+02 Score=21.10 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=16.7
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHH
Q 028084 83 KGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
...|+-+|++.-+.+-..|..+.+
T Consensus 36 ld~k~tkEL~~Ak~e~~~Lr~dl~ 59 (125)
T PF03245_consen 36 LDAKYTKELADAKAEIDRLRADLA 59 (125)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777777777777777654
No 295
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=23.03 E-value=3.8e+02 Score=21.12 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhhhhHHHHh
Q 028084 20 LFSIFGGVGIACLPLGLIF 38 (214)
Q Consensus 20 lfi~y~gvGlaaLPi~lI~ 38 (214)
-|++|--+||+.|-.-+-.
T Consensus 18 GFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 18 GFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566788888888765544
No 296
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=22.98 E-value=1.8e+02 Score=22.27 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDV 105 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~ 105 (214)
+..++-.++..-.+..++||+.+ ..-|++-+.++..=..|+++.
T Consensus 51 ~~e~~Y~Qs~~Yv~~NerLqqa~------~~Lkkk~e~L~~age~Le~~i 94 (97)
T PF15136_consen 51 EREQQYQQSRTYVAMNERLQQAR------DQLKKKCEELRQAGEELERDI 94 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777778887544 234555555666555666554
No 297
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=22.96 E-value=5.6e+02 Score=23.05 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhh
Q 028084 94 VEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDD 173 (214)
Q Consensus 94 l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~ 173 (214)
+..|+.+.|+|++.-...+.+-++. -| -+|++..++.++-. +-++++|...++ .-
T Consensus 129 me~Ei~~~ee~~~~~a~~~~~~g~~------aP-------a~GivgaV~GlI~~----l~~l~~p~~LG~--------~i 183 (266)
T COG1291 129 MEEEIETMEERHEKPAHAFTTAGDY------AP-------AFGIVGAVMGLIHA----LGNLDDPAELGA--------LI 183 (266)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhh------Cc-------hhhHHHHHHHHHHH----HHcCCCHHHHHH--------HH
Confidence 5566666666666655554444431 11 35777777776433 235555321111 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 028084 174 LWGLLGTAAFAFFCFYLLLAVIAG 197 (214)
Q Consensus 174 ~fpll~~i~~~~~~~Yll~~s~~G 197 (214)
+-.+.+ .+|++|..|.++.=+..
T Consensus 184 A~Alv~-T~~Gi~~ay~~~~P~a~ 206 (266)
T COG1291 184 AAALVG-TLYGIFLAYGLFGPLAN 206 (266)
T ss_pred HHHHHH-HHHHHHHHHHHHhHHHH
Confidence 234444 48999999988876544
No 298
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=22.88 E-value=6.8e+02 Score=23.98 Aligned_cols=8 Identities=0% Similarity=-0.259 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 028084 12 LATIVGSV 19 (214)
Q Consensus 12 ~l~~iG~~ 19 (214)
.+..++|.
T Consensus 159 ~l~~~~~~ 166 (582)
T PRK11176 159 MMFYYSWQ 166 (582)
T ss_pred HHHHHHHH
Confidence 33444444
No 299
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=22.83 E-value=2.2e+02 Score=20.53 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhh
Q 028084 130 LAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDL 174 (214)
Q Consensus 130 ~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~ 174 (214)
..--+.+++..+++++-++.++++.=...++++|.+.+..+..++
T Consensus 17 ivl~~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l~~y~~rv 61 (80)
T PF14333_consen 17 IVLSLASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGLSRYIYRV 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHH
Confidence 344455666666677777777766555556777777766665543
No 300
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.82 E-value=2.3e+02 Score=18.45 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028084 60 LGKKARELKKAADTLHQ 76 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~ 76 (214)
++++-+.|...-+.|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~ 19 (45)
T PF02183_consen 3 LERDYDALKASYDSLKA 19 (45)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 301
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=22.81 E-value=3.1e+02 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
-.+.++..+++-|+.||.+++.+...
T Consensus 270 ~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 270 MLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 35567888999999999998887654
No 302
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=22.74 E-value=1.3e+02 Score=22.69 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028084 53 YIKEATELGKKARELKK 69 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e 69 (214)
+.++++++++|.+-++|
T Consensus 104 ~~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 104 FEETIAELKEDIAALKE 120 (121)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45677777777777665
No 303
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.68 E-value=4.3e+02 Score=21.63 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028084 131 AKLVLGILGFIVSVA 145 (214)
Q Consensus 131 ~kLl~Gii~lllSl~ 145 (214)
.+-+.|+++.+++++
T Consensus 155 lr~~~g~i~~~~a~~ 169 (177)
T PF07798_consen 155 LRWLVGVIFGCVALV 169 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 304
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.61 E-value=5.7e+02 Score=24.87 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC--cC----------------hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 60 LGKKARELKKAADTLHQEERSGS--KG----------------RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~~~~~~~--~s----------------~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+=+|.++|.+..|-||.|.++.- .+ ...++..++++.||..|..+-..++..
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677776665421 00 223445556666666666555554444
No 305
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.57 E-value=1.8e+02 Score=32.31 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+++.+|++-|.-+.++--+.-+.+.++.-+....+|+++|+|....|.+-++++.+.
T Consensus 1543 ~at~~ei~~aa~~~~~~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~eg 1600 (1634)
T PLN03223 1543 LATADEIDQAAHMLMDQVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEG 1600 (1634)
T ss_pred cccHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467778877777776654443333222223345788888888888888888877765
No 306
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=22.52 E-value=3.7e+02 Score=20.76 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC---cC---hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 53 YIKEATELGKKARELKKAADTLHQEERSGS---KG---RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~---~s---~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
+.+...++.+.+.++.+.-+.|+....... .+ +--+...+++.++....-.++..++..|.+
T Consensus 46 l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 113 (151)
T cd00179 46 LESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666654221110 11 112234445666666666666666655443
No 307
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=22.42 E-value=1.5e+02 Score=20.34 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 028084 6 PEYVVALATIVGSVLFSIFGGVGIACLP 33 (214)
Q Consensus 6 ~~f~i~~l~~iG~~lfi~y~gvGlaaLP 33 (214)
.+|-.++...++-..+++| +.|++++|
T Consensus 28 ~Ly~~Tm~L~~~gt~~~l~-~l~~a~~p 54 (56)
T PF02238_consen 28 ILYRVTMPLTVAGTSYCLY-GLGIANMP 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHTS-
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHhCC
Confidence 3466666555666666666 78888888
No 308
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=22.26 E-value=3.1e+02 Score=19.81 Aligned_cols=30 Identities=7% Similarity=0.246 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
+..|-..++|.++....-.++..+...|.+
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777666665444
No 309
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.15 E-value=2.4e+02 Score=29.05 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=7.7
Q ss_pred hhhhHHHHhhccc
Q 028084 30 ACLPLGLIFSFIR 42 (214)
Q Consensus 30 aaLPi~lI~~f~~ 42 (214)
+.+|-+.|..+..
T Consensus 497 ~Glp~~ii~~A~~ 509 (782)
T PRK00409 497 LGLPENIIEEAKK 509 (782)
T ss_pred hCcCHHHHHHHHH
Confidence 3467777766543
No 310
>PRK00106 hypothetical protein; Provisional
Probab=21.93 E-value=5e+02 Score=25.67 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 028084 13 ATIVGSVL 20 (214)
Q Consensus 13 l~~iG~~l 20 (214)
-.++|.+.
T Consensus 10 ~~~~~~~~ 17 (535)
T PRK00106 10 SALIGLVI 17 (535)
T ss_pred HHHHHHHH
Confidence 34556544
No 311
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.83 E-value=4.2e+02 Score=27.06 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028084 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
|++++++|+...|++.+.+|..
T Consensus 553 E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 553 ELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666665553
No 312
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.79 E-value=3.6e+02 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028084 89 KNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le 109 (214)
.+.+++++++..++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 43 EEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666655553
No 313
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.77 E-value=3.8e+02 Score=20.61 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 028084 86 KWRKNVKSVEKELLQLE 102 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le 102 (214)
.-|.|-+.||+.+..++
T Consensus 40 ~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 40 RLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 314
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.69 E-value=1.7e+02 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.++++|++++..|+.+.+.|+.+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999988888888877
No 315
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=21.45 E-value=2.9e+02 Score=25.24 Aligned_cols=12 Identities=0% Similarity=-0.067 Sum_probs=5.0
Q ss_pred HHHHHHhhhhhh
Q 028084 165 NEVFIKLDDLWG 176 (214)
Q Consensus 165 N~~f~~l~~~fp 176 (214)
|.+...+...-|
T Consensus 125 ~~I~~~~~~~~~ 136 (378)
T TIGR01554 125 TKIEKLVEQYPS 136 (378)
T ss_pred HHHHHHHhhhhh
Confidence 444444443333
No 316
>PRK01631 hypothetical protein; Provisional
Probab=21.40 E-value=2.1e+02 Score=21.00 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHH
Q 028084 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQL 101 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~L 101 (214)
+++++..+|-++.+..+.+.....|-..||++-..-
T Consensus 3 ~ii~RINeLakK~K~~gLT~eE~~Eq~~LR~eYl~~ 38 (76)
T PRK01631 3 NILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQT 38 (76)
T ss_pred hHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777666666666654443
No 317
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.36 E-value=4e+02 Score=21.39 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028084 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~ 113 (214)
.+..+..++ ++.+..+.+++-. +..+..|.++..++.+...|+++.+.+...|-
T Consensus 31 ~R~dL~~KV-~~~~~~~~lk~~~---ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l 84 (126)
T PF07028_consen 31 YRSDLGSKV-SQKKLLEELKNLS---KIQESQRSELKELKQELDVLSKELQALRKEYL 84 (126)
T ss_pred hHhhHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 3333333443211 11234566777777777777777777666543
No 318
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.36 E-value=3.6e+02 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+++.++.+++|...|..+.+.++.
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444443
No 319
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=4.8e+02 Score=23.14 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028084 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
+...++++...|++..+.+++
T Consensus 94 eik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 94 EIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 320
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.32 E-value=5.1e+02 Score=26.43 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH-------------HHHHHHhhhhhhhhhHHHHhhc
Q 028084 8 YVVALATIVGS-------------VLFSIFGGVGIACLPLGLIFSF 40 (214)
Q Consensus 8 f~i~~l~~iG~-------------~lfi~y~gvGlaaLPi~lI~~f 40 (214)
|++..++++|+ ..++...|+|+.|..++-+-+.
T Consensus 257 wai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~l 302 (823)
T PLN03192 257 WSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNL 302 (823)
T ss_pred HHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888873 4556667889999988888764
No 321
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=21.13 E-value=1.9e+02 Score=28.62 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHh-hh--ccCCcChHhHHHHHHHHHHHHHHHH
Q 028084 59 ELGKKARELKKAADTLHQ-EE--RSGSKGRKWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~-~~--~~~~~s~k~rr~l~~l~~~~~~Le~ 103 (214)
+.++++.+|...-|+|+. |+ +.|.+ =...++++.++|.+.|.+
T Consensus 515 ~~ekKir~L~kkLraIe~LK~r~a~Ge~--Le~nQl~kIq~E~~~l~E 560 (566)
T KOG2315|consen 515 EEEKKIRSLLKKLRAIEALKERMANGEQ--LEVNQLNKIQKEPKLLSE 560 (566)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc--cCHHHHHHHhhhHHHHHH
Confidence 344444455555555554 22 22221 133577777777766654
No 322
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.75 E-value=1.2e+02 Score=21.18 Aligned_cols=25 Identities=32% Similarity=0.447 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
-|.|++-++.....|+++.+.+|..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776666654
No 323
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.67 E-value=95 Score=18.41 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=11.1
Q ss_pred cCHHHHHHHHHHH
Q 028084 48 ITRSQYIKEATEL 60 (214)
Q Consensus 48 is~~~~~~~~~~l 60 (214)
||.+||.+.|.+|
T Consensus 17 IseeEy~~~k~~l 29 (31)
T PF09851_consen 17 ISEEEYEQKKARL 29 (31)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999887765
No 324
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.66 E-value=4.4e+02 Score=23.97 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028084 54 IKEATELGKKARELKKAADTLH 75 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~ 75 (214)
.+.+.+++..+++.+.+++.|+
T Consensus 74 ~~~k~~l~~~~~~~~~~a~~Ik 95 (297)
T KOG0810|consen 74 KELKRKLESLVDEIRRRARKIK 95 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555
No 325
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.66 E-value=1.8e+02 Score=24.34 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHH
Q 028084 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDV 105 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~ 105 (214)
+-+|++-.||.|-++ ...-|-+.++|+.|.|+|..+.
T Consensus 11 ~AIERnalLE~ELdE---KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 11 QAIERNALLESELDE---KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHCH--------------
T ss_pred HHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 555665555543321 1123445556666666665554
No 326
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.63 E-value=2.9e+02 Score=18.91 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-cCC-------cChHhHHHHHHHHHHHHHHHHHHHHH
Q 028084 55 KEATELGKKARELKKAADTLHQEER-SGS-------KGRKWRKNVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~-~~~-------~s~k~rr~l~~l~~~~~~Le~~~~~l 108 (214)
++..++.++.+++......++++-. ++. .-.++|.++..++.+...|+.....|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666654322 222 22578888888888888887776554
No 327
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.52 E-value=3.9e+02 Score=26.85 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC---------cChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028084 51 SQYIKEATELGKKARELKKAADTLHQEERSGS---------KGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~---------~s~k~rr~l~~l~~~~~~Le~~~~~le~~~ 112 (214)
+||++.......|.++|..+-+|+-++..... .+..-=-.+.+.++.+..||++.+.+.+.|
T Consensus 522 EQYSaGHldm~~RiK~LQ~rlDqi~Gk~~~~~~~~~~~~~~~~~Sm~~Rl~~vEkqv~~le~Kld~l~~~~ 592 (654)
T KOG1419|consen 522 EQYSAGHLDMLSRIKELQARLDQIVGKPPVSTDRPADSEIPEKLSMMGRLVKVEKQVQSLEKKLDLLVEIL 592 (654)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444444445566555555554441110 011112356777788888888877776653
No 328
>PRK12705 hypothetical protein; Provisional
Probab=20.51 E-value=8.2e+02 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028084 8 YVVALATIVGSVLFSI 23 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~ 23 (214)
+.+-++.++|.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (508)
T PRK12705 6 LLVILLLLIGLLLGVL 21 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444455444433
No 329
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=20.48 E-value=5.3e+02 Score=23.00 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHhHH
Q 028084 147 VAHIVIYLLINPPLHPFLNEVFIKLDDL-WGLLGTAAFAFFCFYLLLAVIAGAM 199 (214)
Q Consensus 147 ~i~iil~~i~k~~~~~fLN~~f~~l~~~-fpll~~i~~~~~~~Yll~~s~~G~~ 199 (214)
..+.....+|. .-|.+.+..-|++.+ +|+ .++--+++++++++++.|.+
T Consensus 46 ~~~~~~~wid~--Lm~~iPdWl~wLs~v~~~l--a~L~lll~~~~lfs~v~~~I 95 (250)
T COG2981 46 LFSQALPWIDT--LMPGIPDWLGWLSYLLWIL--AVLLLLLVFAFLFSTVANLI 95 (250)
T ss_pred HHHHHHHHHHH--HhhcCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555 445555555666654 554 24555678888899998865
No 330
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=20.46 E-value=3.6e+02 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028084 95 EKELLQLEEDVKLLE 109 (214)
Q Consensus 95 ~~~~~~Le~~~~~le 109 (214)
.+++..|-+=+|+|.
T Consensus 150 ~RKLEnLTDIERQLS 164 (179)
T PF13942_consen 150 TRKLENLTDIERQLS 164 (179)
T ss_pred HHHHhhhhHHHHHHh
Confidence 333333333334433
No 331
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=20.45 E-value=4.1e+02 Score=20.54 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028084 56 EATELGKKARELKKAADTL 74 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l 74 (214)
.-++++.+.+++.+.+.++
T Consensus 17 rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 17 SYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678888888999999888
No 332
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.42 E-value=1.9e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084 125 TVLGYLAKLVLGILGFIVSVAWVAH 149 (214)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSl~w~i~ 149 (214)
.+....+-+++|.++++++++++.+
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666678889999999988887766
No 333
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=20.39 E-value=3.8e+02 Score=25.67 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHH
Q 028084 60 LGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 60 l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~ 106 (214)
++++.+++-......+...++...+.|.+.+++.++.+....+++..
T Consensus 251 l~~~l~~~~~~~~r~~~~l~~~~~~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 251 LNQELAKLAAEIERVQEALKESPKSEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred HHHHHHHHHhHHHHHHHHhccCcchhhhhhhHHHHHHHHHhhHHHHh
Confidence 33333344444444444434444466788888899988888888888
No 334
>PLN02208 glycosyltransferase family protein
Probab=20.35 E-value=3.5e+02 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=8.3
Q ss_pred HHHHhhhhhhhhhH
Q 028084 21 FSIFGGVGIACLPL 34 (214)
Q Consensus 21 fi~y~gvGlaaLPi 34 (214)
=.++.|+=|+++|+
T Consensus 344 Eai~~GVP~l~~P~ 357 (442)
T PLN02208 344 ESLVSDCQMVLIPF 357 (442)
T ss_pred HHHHcCCCEEecCc
Confidence 34566666666665
No 335
>PF13864 Enkurin: Calmodulin-binding
Probab=20.33 E-value=3.7e+02 Score=19.90 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=18.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
...|+.-..+.+++.+||+|.+.++..
T Consensus 70 ~~~~~rK~~lE~~L~qlE~dI~~lsr~ 96 (98)
T PF13864_consen 70 LRKKRRKEELEKELKQLEKDIKKLSRP 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445566667777788888777777653
No 336
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.32 E-value=7.3e+02 Score=23.38 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCChhHHHHHHhhhhhh
Q 028084 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP--------PLHPFLNEVFIKLDDLWG 176 (214)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~--------~~~~fLN~~f~~l~~~fp 176 (214)
+++.||.- .+++++..++=+..+.+|+. .-.|.+-+++..+.++++
T Consensus 161 ~Al~YP~v------ll~v~~~v~~~Ll~~VvP~f~~if~~~~~~LP~lT~~ll~~s~~l~ 214 (397)
T COG1459 161 SALIYPLV------LLVVALVVVLFLLIFVVPQFAEIFESLGAELPALTQFLLALSDFLR 214 (397)
T ss_pred HHHHhhHH------HHHHHHHHHHHHHHHHhccHHHHHhhcCCCCcHHHHHHHHHHHHHH
Confidence 67888753 34555666666777788881 345666777776665443
No 337
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=20.26 E-value=1.3e+02 Score=25.37 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 028084 129 YLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAV 194 (214)
Q Consensus 129 ~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s 194 (214)
+.|.++..+=+++.+++|++.+.. .+-+....+++=.+.-|-.-.++|+.+.|++=+-.+.++
T Consensus 5 R~FclfvtFDll~~~lLWiI~~~~---~~~~~~~~l~~ei~~Y~~~~SLFDivllA~~Rf~vLil~ 67 (171)
T PF10457_consen 5 RTFCLFVTFDLLFTSLLWIICTMT---TSGSIQSALQNEINHYDFKTSLFDIVLLAIFRFLVLILF 67 (171)
T ss_pred EEEeehhHHHHHHHHHHHHHhhhc---cCCCHHHHHHHHHhheehhhhHHHHHHHHHHHHHHHHHH
Confidence 456777777889999999987542 232333334433344555577788888887766555543
No 338
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.20 E-value=4.7e+02 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 028084 68 KKAADTLHQ 76 (214)
Q Consensus 68 ~e~~~~l~~ 76 (214)
.+..+++++
T Consensus 133 ~~~~~~lk~ 141 (216)
T KOG1962|consen 133 MKENEALKK 141 (216)
T ss_pred HHHHHHHHH
Confidence 334444443
No 339
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.09 E-value=3.4e+02 Score=25.69 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028084 87 WRKNVKSVEKELLQLEEDVKLL 108 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~l 108 (214)
-++++..++.+..++|++...+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 78 LKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444443
No 340
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=20.08 E-value=1.7e+02 Score=23.21 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=18.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+|++++-+..+++...|+++.+.|+..
T Consensus 101 ~ke~~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 101 RKEAKKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777777766664
No 341
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.08 E-value=3.9e+02 Score=22.99 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--CC--cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084 56 EATELGKKARELKKAADTLHQEERS--GS--KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~--~~--~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
..+++++-.++.-..++.+++..+. +. +.....++++.+++.+..+..+...+++.
T Consensus 86 Le~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 86 LESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555555543221 11 11123346666777666666666555554
No 342
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=20.00 E-value=5.4e+02 Score=21.69 Aligned_cols=21 Identities=14% Similarity=0.030 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028084 91 VKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+=++++|.|.++.|..+..
T Consensus 99 ~~~kekderil~kkneVad~E 119 (170)
T PF07074_consen 99 MSKKEKDERILWKKNEVADYE 119 (170)
T ss_pred cchHHHHHHHHHHhhhhhhhh
Confidence 334455677888887777654
Done!