Query 028085
Match_columns 214
No_of_seqs 217 out of 2282
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 4.7E-45 1E-49 288.9 12.8 200 1-209 85-288 (348)
2 COG5540 RING-finger-containing 99.8 1.3E-20 2.7E-25 144.9 -2.5 52 149-200 322-373 (374)
3 PF13639 zf-RING_2: Ring finge 99.7 7.2E-19 1.6E-23 100.8 2.4 44 151-195 1-44 (44)
4 cd02125 PA_VSR PA_VSR: Proteas 99.7 3.3E-17 7.2E-22 115.0 7.6 64 1-65 48-120 (127)
5 cd02127 PA_hPAP21_like PA_hPAP 99.7 7.9E-17 1.7E-21 111.7 8.3 65 1-65 40-109 (118)
6 cd02123 PA_C_RZF_like PA_C-RZF 99.7 1.4E-16 3.1E-21 115.6 9.0 73 1-75 73-149 (153)
7 cd02129 PA_hSPPL_like PA_hSPPL 99.7 8.7E-17 1.9E-21 110.8 7.3 63 1-63 50-113 (120)
8 cd02122 PA_GRAIL_like PA _GRAI 99.7 1.6E-16 3.4E-21 113.1 7.9 64 1-64 66-130 (138)
9 cd04813 PA_1 PA_1: Protease-as 99.7 1.9E-16 4.2E-21 109.5 7.5 63 1-63 45-110 (117)
10 cd02126 PA_EDEM3_like PA_EDEM3 99.7 2.9E-16 6.2E-21 110.4 8.3 64 1-64 46-118 (126)
11 COG5243 HRD1 HRD ubiquitin lig 99.6 5.7E-16 1.2E-20 122.5 3.2 53 149-202 286-349 (491)
12 cd02132 PA_GO-like PA_GO-like: 99.6 5.7E-15 1.2E-19 105.6 7.4 62 1-64 65-131 (139)
13 cd04817 PA_VapT_like PA_VapT_l 99.6 6.4E-15 1.4E-19 104.3 7.4 63 1-63 62-132 (139)
14 PF12678 zf-rbx1: RING-H2 zinc 99.6 1.4E-15 3E-20 96.4 2.9 46 149-195 18-73 (73)
15 PHA02929 N1R/p28-like protein; 99.5 6.2E-15 1.3E-19 113.0 4.4 73 125-199 150-227 (238)
16 PF02225 PA: PA domain; Inter 99.5 1.2E-13 2.5E-18 93.7 6.6 62 1-62 39-101 (101)
17 cd02130 PA_ScAPY_like PA_ScAPY 99.5 2E-13 4.4E-18 95.7 7.7 65 1-65 50-115 (122)
18 KOG0317 Predicted E3 ubiquitin 99.5 6E-14 1.3E-18 108.0 4.8 50 149-202 238-287 (293)
19 PLN03208 E3 ubiquitin-protein 99.4 1.3E-13 2.9E-18 101.4 3.6 51 149-202 17-82 (193)
20 cd04816 PA_SaNapH_like PA_SaNa 99.4 9.9E-13 2.1E-17 92.2 7.7 65 1-65 49-115 (122)
21 cd04818 PA_subtilisin_1 PA_sub 99.4 1.4E-12 2.9E-17 91.0 8.1 69 1-69 46-116 (118)
22 PF13920 zf-C3HC4_3: Zinc fing 99.4 4.1E-13 8.8E-18 78.9 3.0 46 150-199 2-48 (50)
23 cd02124 PA_PoS1_like PA_PoS1_l 99.4 2.6E-12 5.6E-17 90.5 7.3 62 1-65 61-122 (129)
24 KOG0823 Predicted E3 ubiquitin 99.3 6.2E-13 1.3E-17 99.6 3.6 53 148-203 45-99 (230)
25 cd00162 RING RING-finger (Real 99.3 1.5E-12 3.2E-17 74.6 3.6 45 152-198 1-45 (45)
26 KOG0320 Predicted E3 ubiquitin 99.3 1.3E-12 2.9E-17 93.7 3.0 51 149-201 130-180 (187)
27 PF13923 zf-C3HC4_2: Zinc fing 99.3 1.4E-12 3E-17 72.5 2.3 39 153-194 1-39 (39)
28 cd02133 PA_C5a_like PA_C5a_lik 99.3 2.8E-11 6.1E-16 87.2 8.4 67 1-70 53-119 (143)
29 KOG2442 Uncharacterized conser 99.3 1.5E-11 3.2E-16 101.0 7.5 73 1-75 101-179 (541)
30 PF15227 zf-C3HC4_4: zinc fing 99.2 4.8E-12 1E-16 71.1 2.7 39 153-194 1-42 (42)
31 PF12861 zf-Apc11: Anaphase-pr 99.2 7.7E-12 1.7E-16 79.7 3.3 50 150-199 21-82 (85)
32 cd00538 PA PA: Protease-associ 99.2 4.7E-11 1E-15 84.0 7.5 63 1-64 52-118 (126)
33 PF14634 zf-RING_5: zinc-RING 99.2 7.5E-12 1.6E-16 71.3 2.6 44 152-196 1-44 (44)
34 KOG0802 E3 ubiquitin ligase [P 99.2 1.3E-11 2.9E-16 106.9 4.2 52 149-201 290-343 (543)
35 PF00097 zf-C3HC4: Zinc finger 99.1 2.4E-11 5.2E-16 68.3 2.6 40 153-194 1-41 (41)
36 smart00184 RING Ring finger. E 99.1 4.7E-11 1E-15 66.0 3.2 39 153-194 1-39 (39)
37 PHA02926 zinc finger-like prot 99.1 3.7E-11 8E-16 89.6 3.2 51 149-199 169-230 (242)
38 KOG0828 Predicted E3 ubiquitin 99.1 6.3E-11 1.4E-15 97.3 4.7 51 149-199 570-634 (636)
39 cd04819 PA_2 PA_2: Protease-as 99.1 9E-10 2E-14 77.6 7.7 66 1-66 50-121 (127)
40 KOG1734 Predicted RING-contain 99.1 4.6E-11 1E-15 91.1 1.2 54 149-202 223-284 (328)
41 smart00504 Ubox Modified RING 99.0 1.8E-10 3.9E-15 71.0 3.6 48 151-202 2-49 (63)
42 PF13445 zf-RING_UBOX: RING-ty 99.0 1.3E-10 2.8E-15 65.2 2.5 39 153-192 1-43 (43)
43 COG5574 PEX10 RING-finger-cont 99.0 2.6E-10 5.6E-15 87.1 2.2 51 149-202 214-265 (271)
44 COG5194 APC11 Component of SCF 98.9 1.2E-09 2.6E-14 67.8 3.1 47 154-201 35-83 (88)
45 smart00744 RINGv The RING-vari 98.9 1.4E-09 3E-14 63.1 3.1 43 152-195 1-49 (49)
46 TIGR00599 rad18 DNA repair pro 98.9 8.2E-10 1.8E-14 90.9 2.8 49 149-201 25-73 (397)
47 KOG3920 Uncharacterized conser 98.9 4.8E-10 1E-14 79.0 1.1 62 1-62 93-161 (193)
48 KOG2164 Predicted E3 ubiquitin 98.9 1.1E-09 2.5E-14 90.8 2.6 50 150-202 186-239 (513)
49 cd02120 PA_subtilisin_like PA_ 98.8 2E-08 4.4E-13 70.6 7.0 61 2-65 58-119 (126)
50 KOG1493 Anaphase-promoting com 98.7 1.7E-09 3.6E-14 66.6 -0.3 50 150-199 20-81 (84)
51 cd02128 PA_TfR PA_TfR: Proteas 98.7 3.2E-08 6.9E-13 73.3 5.9 66 1-66 61-157 (183)
52 cd04815 PA_M28_2 PA_M28_2: Pro 98.7 4.9E-08 1.1E-12 69.4 5.8 65 1-65 45-127 (134)
53 PF04564 U-box: U-box domain; 98.6 1.7E-08 3.7E-13 63.9 2.4 50 150-202 4-53 (73)
54 KOG4265 Predicted E3 ubiquitin 98.6 2.1E-08 4.6E-13 80.0 3.3 51 149-203 289-340 (349)
55 PF11793 FANCL_C: FANCL C-term 98.6 1.1E-08 2.3E-13 64.1 0.9 52 150-201 2-68 (70)
56 TIGR00570 cdk7 CDK-activating 98.6 3.5E-08 7.7E-13 78.2 3.5 53 150-202 3-57 (309)
57 KOG0287 Postreplication repair 98.5 4.1E-08 8.9E-13 77.6 1.1 49 150-202 23-71 (442)
58 KOG2930 SCF ubiquitin ligase, 98.5 9.1E-08 2E-12 62.5 2.2 47 150-197 46-106 (114)
59 COG5219 Uncharacterized conser 98.5 3.8E-08 8.2E-13 87.0 0.4 49 149-199 1468-1523(1525)
60 KOG0824 Predicted E3 ubiquitin 98.4 6.8E-08 1.5E-12 75.3 1.4 54 150-206 7-60 (324)
61 KOG0804 Cytoplasmic Zn-finger 98.4 8.5E-08 1.8E-12 78.5 1.7 48 149-199 174-222 (493)
62 COG5432 RAD18 RING-finger-cont 98.4 1E-07 2.3E-12 73.8 1.9 47 149-199 24-70 (391)
63 KOG0827 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 76.3 1.7 45 151-195 5-52 (465)
64 KOG2177 Predicted E3 ubiquitin 98.3 2.1E-07 4.6E-12 75.3 1.2 44 149-196 12-55 (386)
65 KOG4172 Predicted E3 ubiquitin 98.3 1.8E-07 3.8E-12 53.8 -0.0 48 149-199 6-54 (62)
66 KOG0978 E3 ubiquitin ligase in 98.2 2.2E-07 4.7E-12 81.0 0.1 50 150-202 643-692 (698)
67 KOG1645 RING-finger-containing 98.2 1.1E-06 2.5E-11 71.2 3.1 50 149-198 3-55 (463)
68 KOG0311 Predicted E3 ubiquitin 98.1 3.4E-07 7.4E-12 73.0 -0.9 51 149-202 42-93 (381)
69 KOG0825 PHD Zn-finger protein 98.1 5.6E-07 1.2E-11 78.4 -0.5 51 150-201 123-173 (1134)
70 KOG1941 Acetylcholine receptor 98.1 1.1E-06 2.5E-11 70.9 0.8 48 150-197 365-414 (518)
71 PF14835 zf-RING_6: zf-RING of 98.0 1.2E-06 2.7E-11 52.6 0.2 47 151-202 8-54 (65)
72 PF11789 zf-Nse: Zinc-finger o 97.9 5.7E-06 1.2E-10 49.4 1.9 43 149-193 10-53 (57)
73 KOG1039 Predicted E3 ubiquitin 97.9 4E-06 8.7E-11 68.0 1.6 51 149-199 160-221 (344)
74 KOG1785 Tyrosine kinase negati 97.9 3.5E-06 7.7E-11 68.3 1.0 47 151-200 370-417 (563)
75 KOG4445 Uncharacterized conser 97.9 3.5E-06 7.5E-11 65.8 0.6 51 151-201 116-188 (368)
76 cd02121 PA_GCPII_like PA_GCPII 97.9 2.7E-05 5.9E-10 59.7 5.5 64 2-65 78-190 (220)
77 cd02131 PA_hNAALADL2_like PA_h 97.9 2.6E-05 5.6E-10 55.7 4.6 62 2-63 47-138 (153)
78 KOG4159 Predicted E3 ubiquitin 97.8 7.8E-06 1.7E-10 67.7 1.8 49 149-201 83-131 (398)
79 KOG1002 Nucleotide excision re 97.7 1.3E-05 2.9E-10 67.3 0.6 62 149-213 535-600 (791)
80 KOG3970 Predicted E3 ubiquitin 97.6 5.1E-05 1.1E-09 57.0 3.1 54 149-203 49-109 (299)
81 KOG2879 Predicted E3 ubiquitin 97.6 0.00017 3.7E-09 56.0 5.9 49 149-199 238-287 (298)
82 KOG1428 Inhibitor of type V ad 97.6 4.5E-05 9.8E-10 70.9 3.0 53 149-201 3485-3546(3738)
83 KOG0801 Predicted E3 ubiquitin 97.6 2.1E-05 4.5E-10 56.1 0.4 30 149-178 176-205 (205)
84 PHA02825 LAP/PHD finger-like p 97.6 8.6E-05 1.9E-09 53.1 3.5 50 149-202 7-62 (162)
85 PF12906 RINGv: RING-variant d 97.5 7E-05 1.5E-09 42.9 1.7 41 153-194 1-47 (47)
86 PF05883 Baculo_RING: Baculovi 97.4 5E-05 1.1E-09 52.9 1.1 35 150-184 26-66 (134)
87 KOG0297 TNF receptor-associate 97.4 7E-05 1.5E-09 62.6 2.1 53 149-205 20-73 (391)
88 cd04822 PA_M28_1_3 PA_M28_1_3: 97.4 0.00066 1.4E-08 49.0 6.1 54 6-61 76-131 (151)
89 KOG1814 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 60.2 1.9 49 149-197 183-238 (445)
90 cd04814 PA_M28_1 PA_M28_1: Pro 97.3 0.00025 5.5E-09 50.6 3.6 56 7-62 77-135 (142)
91 KOG4692 Predicted E3 ubiquitin 97.3 0.00016 3.5E-09 58.0 2.6 47 149-199 421-467 (489)
92 KOG1571 Predicted E3 ubiquitin 97.3 0.00019 4.2E-09 57.8 2.8 45 149-200 304-348 (355)
93 PF10367 Vps39_2: Vacuolar sor 97.2 0.00013 2.8E-09 49.7 1.3 32 149-181 77-108 (109)
94 PHA02862 5L protein; Provision 97.2 0.00019 4.2E-09 50.3 2.0 47 151-201 3-55 (156)
95 COG5222 Uncharacterized conser 97.2 0.00014 3E-09 57.1 1.3 52 151-205 275-328 (427)
96 cd04820 PA_M28_1_1 PA_M28_1_1: 97.1 0.00053 1.1E-08 48.7 3.7 25 7-31 73-97 (137)
97 PF14570 zf-RING_4: RING/Ubox 97.1 0.00026 5.6E-09 40.4 1.5 45 153-198 1-47 (48)
98 COG5152 Uncharacterized conser 97.1 0.00014 3.1E-09 53.6 0.4 44 151-198 197-240 (259)
99 KOG4275 Predicted E3 ubiquitin 97.1 0.00012 2.6E-09 57.3 -0.2 42 150-199 300-342 (350)
100 KOG4739 Uncharacterized protei 97.1 0.0003 6.5E-09 53.9 1.8 47 152-202 5-51 (233)
101 KOG4185 Predicted E3 ubiquitin 97.0 0.00033 7.2E-09 56.5 2.1 48 151-198 4-54 (296)
102 KOG0827 Predicted E3 ubiquitin 96.9 2.4E-05 5.2E-10 63.3 -5.3 51 151-202 197-248 (465)
103 KOG2660 Locus-specific chromos 96.9 0.00019 4.1E-09 57.2 -0.4 50 149-201 14-63 (331)
104 KOG0826 Predicted E3 ubiquitin 96.9 0.0017 3.6E-08 51.9 4.6 45 149-197 299-344 (357)
105 KOG1952 Transcription factor N 96.9 0.00055 1.2E-08 60.8 2.1 49 149-197 190-245 (950)
106 KOG3039 Uncharacterized conser 96.9 0.0013 2.9E-08 50.3 3.7 53 149-202 220-273 (303)
107 KOG1813 Predicted E3 ubiquitin 96.8 0.0004 8.7E-09 54.5 0.3 45 151-199 242-286 (313)
108 PF14447 Prok-RING_4: Prokaryo 96.8 0.00063 1.4E-08 39.7 1.1 45 151-201 8-52 (55)
109 COG5236 Uncharacterized conser 96.6 0.0024 5.2E-08 51.3 3.6 45 149-197 60-106 (493)
110 PHA03096 p28-like protein; Pro 96.6 0.001 2.2E-08 53.0 1.5 46 151-196 179-231 (284)
111 KOG1001 Helicase-like transcri 96.1 0.0018 4E-08 57.6 0.6 48 151-202 455-503 (674)
112 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0076 1.6E-07 47.8 3.8 51 149-201 112-163 (260)
113 KOG2817 Predicted E3 ubiquitin 95.8 0.0075 1.6E-07 49.5 2.9 46 149-194 333-380 (394)
114 KOG1940 Zn-finger protein [Gen 95.8 0.0041 8.9E-08 49.1 1.2 46 150-196 158-204 (276)
115 KOG2114 Vacuolar assembly/sort 95.8 0.0041 8.9E-08 55.5 1.3 42 151-198 841-882 (933)
116 KOG2034 Vacuolar sorting prote 95.7 0.005 1.1E-07 55.4 1.5 36 149-185 816-851 (911)
117 PF14446 Prok-RING_1: Prokaryo 95.7 0.016 3.4E-07 33.9 3.0 43 150-197 5-50 (54)
118 KOG3268 Predicted E3 ubiquitin 95.6 0.0095 2.1E-07 43.4 2.3 51 152-202 167-231 (234)
119 KOG2932 E3 ubiquitin ligase in 95.4 0.0052 1.1E-07 48.7 0.5 30 167-199 105-134 (389)
120 COG5175 MOT2 Transcriptional r 95.4 0.011 2.4E-07 47.5 2.3 53 149-201 13-66 (480)
121 PF08746 zf-RING-like: RING-li 95.1 0.0072 1.6E-07 33.8 0.4 42 153-194 1-43 (43)
122 KOG1100 Predicted E3 ubiquitin 95.0 0.0083 1.8E-07 45.8 0.6 41 153-201 161-202 (207)
123 KOG3002 Zn finger protein [Gen 94.9 0.014 3.1E-07 46.9 1.7 42 150-199 48-91 (299)
124 KOG0309 Conserved WD40 repeat- 94.7 0.017 3.7E-07 51.2 1.8 40 152-193 1030-1069(1081)
125 KOG3161 Predicted E3 ubiquitin 94.3 0.011 2.4E-07 51.3 -0.2 43 151-197 12-55 (861)
126 KOG3800 Predicted E3 ubiquitin 93.7 0.059 1.3E-06 42.5 2.7 49 152-200 2-52 (300)
127 KOG0298 DEAD box-containing he 93.3 0.026 5.6E-07 52.9 0.3 46 150-198 1153-1198(1394)
128 KOG3053 Uncharacterized conser 93.3 0.036 7.9E-07 42.9 1.1 51 149-199 19-82 (293)
129 KOG1812 Predicted E3 ubiquitin 92.6 0.046 1E-06 45.8 0.7 38 150-187 146-184 (384)
130 PF07800 DUF1644: Protein of u 92.5 0.18 3.9E-06 36.3 3.5 33 150-185 2-47 (162)
131 PF05290 Baculo_IE-1: Baculovi 92.0 0.13 2.8E-06 35.9 2.2 50 150-202 80-135 (140)
132 COG5109 Uncharacterized conser 91.5 0.14 3.1E-06 40.9 2.3 46 149-194 335-382 (396)
133 KOG3899 Uncharacterized conser 91.4 0.098 2.1E-06 41.4 1.3 31 171-201 325-367 (381)
134 KOG4367 Predicted Zn-finger pr 91.3 0.091 2E-06 43.9 1.1 35 149-186 3-37 (699)
135 PF10272 Tmpp129: Putative tra 91.3 0.15 3.2E-06 42.2 2.2 30 171-200 311-352 (358)
136 KOG1609 Protein involved in mR 91.2 0.1 2.2E-06 42.5 1.3 52 150-201 78-136 (323)
137 KOG1829 Uncharacterized conser 91.0 0.069 1.5E-06 46.7 0.1 42 150-195 511-557 (580)
138 KOG0802 E3 ubiquitin ligase [P 90.9 0.17 3.6E-06 44.6 2.4 47 149-203 478-524 (543)
139 COG5183 SSM4 Protein involved 90.8 0.21 4.5E-06 45.1 2.8 52 149-201 11-68 (1175)
140 PF07975 C1_4: TFIIH C1-like d 90.4 0.2 4.4E-06 29.0 1.7 42 153-195 2-50 (51)
141 PF13901 DUF4206: Domain of un 89.7 0.22 4.7E-06 38.0 1.9 42 149-196 151-197 (202)
142 COG5220 TFB3 Cdk activating ki 89.7 0.15 3.2E-06 39.2 0.9 50 149-198 9-63 (314)
143 KOG3356 Predicted membrane pro 89.5 2.3 4.9E-05 28.9 6.3 42 22-63 45-88 (147)
144 PF03854 zf-P11: P-11 zinc fin 89.3 0.1 2.3E-06 29.4 -0.1 33 168-201 15-48 (50)
145 KOG4362 Transcriptional regula 89.2 0.074 1.6E-06 47.1 -1.1 51 149-202 20-72 (684)
146 KOG0269 WD40 repeat-containing 89.1 0.37 8E-06 43.1 3.0 39 151-193 780-820 (839)
147 PF02891 zf-MIZ: MIZ/SP-RING z 88.5 0.19 4.2E-06 29.0 0.6 44 151-197 3-50 (50)
148 KOG2807 RNA polymerase II tran 88.4 0.42 9.2E-06 38.5 2.7 68 127-196 308-375 (378)
149 smart00249 PHD PHD zinc finger 88.4 0.12 2.5E-06 28.8 -0.3 30 153-182 2-31 (47)
150 KOG2066 Vacuolar assembly/sort 87.6 0.26 5.6E-06 44.3 1.1 44 150-195 784-831 (846)
151 KOG0825 PHD Zn-finger protein 86.1 0.57 1.2E-05 42.3 2.4 50 149-198 95-153 (1134)
152 cd04821 PA_M28_1_2 PA_M28_1_2: 85.8 1.1 2.5E-05 32.6 3.5 23 7-29 80-102 (157)
153 PF00628 PHD: PHD-finger; Int 85.5 0.084 1.8E-06 30.4 -2.0 44 153-196 2-50 (51)
154 KOG3113 Uncharacterized conser 85.2 0.76 1.6E-05 35.8 2.4 51 149-202 110-161 (293)
155 PF13717 zinc_ribbon_4: zinc-r 82.5 0.64 1.4E-05 24.8 0.8 25 152-176 4-36 (36)
156 PF06844 DUF1244: Protein of u 82.3 0.86 1.9E-05 27.7 1.3 13 174-186 11-23 (68)
157 PF10571 UPF0547: Uncharacteri 82.2 0.67 1.4E-05 22.8 0.7 22 152-175 2-24 (26)
158 smart00132 LIM Zinc-binding do 82.1 1.3 2.8E-05 23.3 1.9 36 153-198 2-37 (39)
159 KOG1815 Predicted E3 ubiquitin 81.7 0.76 1.6E-05 39.4 1.4 37 149-187 69-105 (444)
160 PF04710 Pellino: Pellino; In 78.9 0.63 1.4E-05 38.6 0.0 46 149-197 276-337 (416)
161 KOG3842 Adaptor protein Pellin 78.5 2.5 5.4E-05 34.1 3.1 52 149-200 340-415 (429)
162 TIGR00622 ssl1 transcription f 78.2 3.6 7.8E-05 28.1 3.5 44 151-195 56-110 (112)
163 KOG3842 Adaptor protein Pellin 77.7 0.96 2.1E-05 36.4 0.7 43 149-196 289-349 (429)
164 KOG1812 Predicted E3 ubiquitin 77.7 1.1 2.5E-05 37.6 1.2 43 151-194 307-351 (384)
165 PF01102 Glycophorin_A: Glycop 77.4 6 0.00013 27.5 4.4 27 83-110 67-93 (122)
166 PF13719 zinc_ribbon_5: zinc-r 77.0 1.5 3.2E-05 23.5 1.1 26 151-176 3-36 (37)
167 PF05715 zf-piccolo: Piccolo Z 75.4 2 4.4E-05 25.5 1.4 18 190-207 4-21 (61)
168 PF06716 DUF1201: Protein of u 75.1 12 0.00027 20.9 4.5 28 83-110 9-36 (54)
169 KOG3039 Uncharacterized conser 74.8 1.8 4E-05 33.6 1.5 35 150-187 43-77 (303)
170 KOG2068 MOT2 transcription fac 74.0 2.8 6.1E-05 34.1 2.4 51 151-203 250-302 (327)
171 KOG3005 GIY-YIG type nuclease 73.8 1.8 3.9E-05 34.1 1.3 48 151-198 183-242 (276)
172 PF04710 Pellino: Pellino; In 73.6 1.1 2.3E-05 37.3 0.0 51 150-200 328-402 (416)
173 KOG3579 Predicted E3 ubiquitin 72.4 2 4.4E-05 34.1 1.2 37 149-188 267-307 (352)
174 PF06906 DUF1272: Protein of u 72.3 8 0.00017 22.8 3.4 48 151-201 6-54 (57)
175 PF14569 zf-UDP: Zinc-binding 71.9 6.1 0.00013 24.9 3.0 56 150-205 9-68 (80)
176 PF01363 FYVE: FYVE zinc finge 71.6 1.7 3.7E-05 26.6 0.6 35 150-184 9-44 (69)
177 PF00412 LIM: LIM domain; Int 71.0 2.3 4.9E-05 24.8 1.0 39 153-201 1-39 (58)
178 PF04423 Rad50_zn_hook: Rad50 69.9 1.5 3.2E-05 25.6 0.0 12 190-201 22-33 (54)
179 KOG4185 Predicted E3 ubiquitin 69.2 0.77 1.7E-05 37.0 -1.7 48 150-197 207-265 (296)
180 COG4847 Uncharacterized protei 68.6 4.6 0.0001 26.5 2.1 34 150-184 6-39 (103)
181 PF07191 zinc-ribbons_6: zinc- 65.6 0.26 5.6E-06 30.5 -3.9 40 151-199 2-41 (70)
182 PF06677 Auto_anti-p27: Sjogre 65.5 5.5 0.00012 21.9 1.7 22 180-202 10-31 (41)
183 cd00350 rubredoxin_like Rubred 64.8 3.7 8.1E-05 21.2 0.9 8 190-197 19-26 (33)
184 PF02439 Adeno_E3_CR2: Adenovi 64.7 20 0.00044 19.3 4.3 25 83-107 6-30 (38)
185 cd00065 FYVE FYVE domain; Zinc 62.4 6.2 0.00014 22.9 1.8 35 151-185 3-38 (57)
186 KOG0824 Predicted E3 ubiquitin 62.0 2.9 6.4E-05 33.5 0.3 47 149-198 104-150 (324)
187 COG4882 Predicted aminopeptida 61.8 14 0.0003 30.8 4.1 47 12-59 108-160 (486)
188 KOG4718 Non-SMC (structural ma 60.2 4.2 9E-05 30.9 0.8 42 151-195 182-223 (235)
189 PF05605 zf-Di19: Drought indu 59.1 2.6 5.6E-05 24.6 -0.3 11 151-161 3-13 (54)
190 PF12660 zf-TFIIIC: Putative z 59.0 0.95 2.1E-05 30.2 -2.5 54 151-206 15-73 (99)
191 PF03119 DNA_ligase_ZBD: NAD-d 58.9 4.8 0.0001 20.0 0.7 15 190-204 1-15 (28)
192 PF14169 YdjO: Cold-inducible 58.9 4.4 9.5E-05 24.2 0.6 32 166-201 16-52 (59)
193 KOG2195 Transferrin receptor a 58.9 8.5 0.00018 35.1 2.6 26 4-29 193-218 (702)
194 PRK01026 tetrahydromethanopter 58.2 14 0.0003 23.3 2.7 23 41-63 3-25 (77)
195 PF15050 SCIMP: SCIMP protein 58.0 22 0.00048 24.5 3.9 6 102-107 28-33 (133)
196 COG3492 Uncharacterized protei 57.5 5.1 0.00011 26.0 0.8 14 174-187 42-55 (104)
197 KOG2979 Protein involved in DN 56.4 5.8 0.00013 31.1 1.1 46 149-196 175-221 (262)
198 KOG1815 Predicted E3 ubiquitin 56.3 3.3 7.2E-05 35.6 -0.3 37 151-187 227-268 (444)
199 KOG1729 FYVE finger containing 55.5 2.2 4.8E-05 34.3 -1.3 38 151-188 215-252 (288)
200 smart00064 FYVE Protein presen 54.6 12 0.00025 22.7 2.1 36 150-185 10-46 (68)
201 cd03029 GRX_hybridPRX5 Glutare 53.3 16 0.00035 22.2 2.6 51 3-53 8-59 (72)
202 PF07649 C1_3: C1-like domain; 53.0 9.5 0.00021 19.1 1.2 29 152-180 2-30 (30)
203 PF08029 HisG_C: HisG, C-termi 52.5 21 0.00044 22.5 2.9 23 7-29 51-73 (75)
204 PF05568 ASFV_J13L: African sw 52.4 30 0.00066 24.7 4.0 22 87-108 35-56 (189)
205 PF09176 Mpt_N: Methylene-tetr 52.4 23 0.00049 22.6 3.1 52 12-63 4-65 (81)
206 PLN02189 cellulose synthase 51.9 20 0.00043 34.1 3.8 53 150-202 34-90 (1040)
207 PRK03564 formate dehydrogenase 51.4 8.7 0.00019 31.3 1.4 41 150-196 187-234 (309)
208 PF09237 GAGA: GAGA factor; I 51.2 4.5 9.7E-05 23.4 -0.2 12 190-201 26-37 (54)
209 PLN02436 cellulose synthase A 51.1 20 0.00044 34.1 3.8 53 150-202 36-92 (1094)
210 PRK00523 hypothetical protein; 51.0 48 0.001 20.7 4.3 16 94-109 15-30 (72)
211 PF04216 FdhE: Protein involve 50.6 1.6 3.4E-05 35.2 -3.0 44 151-196 173-219 (290)
212 PF06679 DUF1180: Protein of u 50.5 24 0.00052 25.9 3.4 16 95-110 104-119 (163)
213 smart00647 IBR In Between Ring 49.8 4.8 0.0001 23.9 -0.2 20 164-183 38-58 (64)
214 TIGR03147 cyt_nit_nrfF cytochr 49.3 90 0.0019 21.9 6.1 15 64-78 86-100 (126)
215 PF15102 TMEM154: TMEM154 prot 49.1 7.9 0.00017 27.7 0.7 9 178-186 128-136 (146)
216 PF04210 MtrG: Tetrahydrometha 48.9 21 0.00045 22.0 2.4 20 44-63 3-22 (70)
217 PF06676 DUF1178: Protein of u 48.5 25 0.00054 25.4 3.2 9 189-197 33-41 (148)
218 PF06794 UPF0270: Uncharacteri 48.4 33 0.00072 21.3 3.3 27 5-31 32-60 (70)
219 PF03884 DUF329: Domain of unk 47.9 8.4 0.00018 22.9 0.6 14 190-203 4-17 (57)
220 PF03918 CcmH: Cytochrome C bi 47.3 12 0.00027 26.9 1.5 15 64-78 86-100 (148)
221 COG3364 Zn-ribbon containing p 47.1 12 0.00026 24.9 1.3 27 167-198 4-30 (112)
222 PF15353 HECA: Headcase protei 47.0 11 0.00023 25.4 1.1 15 171-185 40-54 (107)
223 COG3763 Uncharacterized protei 46.9 58 0.0013 20.2 4.1 15 95-109 15-29 (71)
224 PF02009 Rifin_STEVOR: Rifin/s 46.6 35 0.00076 27.7 4.1 15 95-109 268-282 (299)
225 PRK11827 hypothetical protein; 46.1 8 0.00017 23.2 0.3 10 191-200 11-20 (60)
226 PF09943 DUF2175: Uncharacteri 45.8 19 0.00041 24.1 2.0 33 152-185 4-36 (101)
227 PF10083 DUF2321: Uncharacteri 45.7 9.8 0.00021 27.5 0.8 44 154-201 8-52 (158)
228 PF10577 UPF0560: Uncharacteri 45.6 47 0.001 30.7 5.1 21 42-62 206-226 (807)
229 PRK01844 hypothetical protein; 45.0 66 0.0014 20.1 4.2 14 95-108 15-28 (72)
230 PF09723 Zn-ribbon_8: Zinc rib 44.9 4.8 0.0001 22.1 -0.7 27 168-196 8-34 (42)
231 PF05636 HIGH_NTase1: HIGH Nuc 44.8 22 0.00048 30.1 2.9 24 1-24 42-68 (388)
232 KOG3183 Predicted Zn-finger pr 44.3 6.8 0.00015 30.4 -0.2 21 190-210 57-77 (250)
233 PRK04966 hypothetical protein; 44.1 46 0.00099 20.8 3.5 27 5-31 32-60 (72)
234 PF14311 DUF4379: Domain of un 43.1 13 0.00028 21.6 0.9 22 171-194 34-55 (55)
235 PF14654 Epiglycanin_C: Mucin, 41.7 62 0.0013 21.5 3.9 29 76-108 16-44 (106)
236 PRK11200 grxA glutaredoxin 1; 41.5 37 0.0008 21.4 3.0 51 3-53 8-67 (85)
237 TIGR01478 STEVOR variant surfa 41.1 54 0.0012 26.3 4.3 24 84-107 262-285 (295)
238 TIGR01562 FdhE formate dehydro 40.9 13 0.00028 30.3 0.8 41 150-196 184-232 (305)
239 cd03028 GRX_PICOT_like Glutare 40.8 46 0.00099 21.4 3.4 48 5-53 22-72 (90)
240 PRK03972 ribosomal biogenesis 40.6 51 0.0011 25.2 4.0 31 1-31 31-61 (208)
241 PTZ00370 STEVOR; Provisional 40.6 45 0.00097 26.8 3.8 23 84-106 258-280 (296)
242 PF14316 DUF4381: Domain of un 40.5 22 0.00048 25.4 2.0 14 96-109 32-45 (146)
243 COG3088 CcmH Uncharacterized p 40.2 1.3E+02 0.0029 21.7 5.7 14 63-76 89-102 (153)
244 PF11395 DUF2873: Protein of u 40.2 60 0.0013 17.3 4.3 20 88-107 14-33 (43)
245 PF11023 DUF2614: Protein of u 40.0 11 0.00023 25.7 0.2 19 190-208 87-105 (114)
246 PF02318 FYVE_2: FYVE-type zin 39.9 17 0.00038 24.9 1.3 46 149-196 53-102 (118)
247 PF05399 EVI2A: Ectropic viral 39.7 36 0.00079 26.0 3.0 12 95-106 145-156 (227)
248 cd03418 GRX_GRXb_1_3_like Glut 39.7 32 0.00069 20.8 2.4 50 4-53 8-60 (75)
249 PF05083 LST1: LST-1 protein; 39.4 93 0.002 19.2 4.6 14 125-138 39-52 (74)
250 COG4647 AcxC Acetone carboxyla 39.2 19 0.00041 25.2 1.3 22 153-177 60-81 (165)
251 PF07282 OrfB_Zn_ribbon: Putat 39.1 29 0.00064 21.0 2.1 32 151-182 29-63 (69)
252 PF13832 zf-HC5HC2H_2: PHD-zin 38.9 32 0.0007 23.0 2.5 32 149-182 54-87 (110)
253 COG4357 Zinc finger domain con 38.9 21 0.00045 23.6 1.4 29 171-201 65-93 (105)
254 TIGR00686 phnA alkylphosphonat 38.2 17 0.00037 24.6 1.0 23 152-175 4-29 (109)
255 TIGR01149 mtrG N5-methyltetrah 38.0 20 0.00044 22.0 1.2 20 44-63 3-22 (70)
256 CHL00038 psbL photosystem II p 37.7 67 0.0015 17.1 3.0 15 87-101 19-33 (38)
257 PRK05978 hypothetical protein; 37.3 20 0.00044 25.8 1.3 30 172-207 42-71 (148)
258 PF13314 DUF4083: Domain of un 37.3 58 0.0012 19.3 3.0 7 104-110 26-32 (58)
259 PF14979 TMEM52: Transmembrane 37.2 1.3E+02 0.0028 21.6 5.2 9 75-83 13-21 (154)
260 cd03027 GRX_DEP Glutaredoxin ( 36.9 31 0.00067 21.0 2.0 49 4-53 9-60 (73)
261 PRK00418 DNA gyrase inhibitor; 36.8 20 0.00042 21.7 1.0 10 190-199 8-17 (62)
262 smart00734 ZnF_Rad18 Rad18-lik 36.7 14 0.00031 17.9 0.4 9 190-198 3-11 (26)
263 PF08114 PMP1_2: ATPase proteo 36.7 9.5 0.00021 20.8 -0.3 16 95-110 19-34 (43)
264 PRK11088 rrmA 23S rRNA methylt 35.8 26 0.00056 27.8 1.9 25 151-175 3-27 (272)
265 PRK00753 psbL photosystem II r 35.7 68 0.0015 17.1 2.8 15 87-101 20-34 (39)
266 PF15183 MRAP: Melanocortin-2 35.1 1.2E+02 0.0027 19.4 4.9 19 84-102 39-57 (90)
267 COG3813 Uncharacterized protei 35.1 62 0.0013 20.1 3.0 48 152-202 7-55 (84)
268 PF02419 PsbL: PsbL protein; 34.5 77 0.0017 16.8 3.5 14 88-101 19-32 (37)
269 PF05191 ADK_lid: Adenylate ki 34.5 18 0.00039 19.2 0.5 29 170-201 6-34 (36)
270 PF10497 zf-4CXXC_R1: Zinc-fin 34.3 57 0.0012 22.0 3.0 25 172-196 37-69 (105)
271 PF04906 Tweety: Tweety; Inte 34.2 91 0.002 26.6 5.0 16 95-110 32-47 (406)
272 PRK10144 formate-dependent nit 33.9 1.7E+02 0.0036 20.5 6.3 14 63-76 85-98 (126)
273 COG4306 Uncharacterized protei 33.9 19 0.00041 25.0 0.7 24 174-201 29-52 (160)
274 KOG2041 WD40 repeat protein [G 33.8 39 0.00084 31.0 2.7 46 149-199 1130-1185(1189)
275 COG1545 Predicted nucleic-acid 33.7 19 0.00042 25.6 0.8 20 170-198 34-53 (140)
276 KOG1245 Chromatin remodeling c 33.5 13 0.00028 36.8 -0.2 50 149-198 1107-1159(1404)
277 PRK00304 hypothetical protein; 33.5 81 0.0018 19.9 3.4 27 5-31 31-59 (75)
278 KOG1538 Uncharacterized conser 33.0 19 0.00042 32.5 0.8 34 165-199 1043-1077(1081)
279 PF00130 C1_1: Phorbol esters/ 32.7 29 0.00063 19.7 1.3 34 149-182 10-45 (53)
280 PF15122 TMEM206: TMEM206 prot 32.6 66 0.0014 25.3 3.4 14 165-178 69-82 (298)
281 TIGR02190 GlrX-dom Glutaredoxi 32.0 39 0.00085 21.0 1.9 50 3-53 15-66 (79)
282 PRK10220 hypothetical protein; 31.9 31 0.00067 23.4 1.4 25 151-175 4-30 (111)
283 PTZ00046 rifin; Provisional 31.7 78 0.0017 26.5 4.0 16 95-110 327-342 (358)
284 COG0695 GrxC Glutaredoxin and 31.7 71 0.0015 20.1 3.1 50 4-53 9-62 (80)
285 PF10577 UPF0560: Uncharacteri 31.6 1.9E+02 0.0041 27.0 6.6 24 87-110 279-302 (807)
286 KOG2169 Zn-finger transcriptio 31.4 24 0.00051 32.0 1.1 42 151-199 307-356 (636)
287 TIGR01477 RIFIN variant surfac 31.3 80 0.0017 26.3 4.0 16 95-110 322-337 (353)
288 PLN02915 cellulose synthase A 31.0 66 0.0014 30.9 3.8 52 149-200 14-69 (1044)
289 COG5627 MMS21 DNA repair prote 30.9 23 0.00049 27.6 0.8 43 149-193 188-231 (275)
290 KOG2231 Predicted E3 ubiquitin 30.9 47 0.001 30.2 2.7 48 152-202 2-55 (669)
291 COG2835 Uncharacterized conser 30.7 25 0.00055 21.0 0.8 12 190-201 10-21 (60)
292 TIGR03884 sel_bind_Methan sele 30.5 68 0.0015 20.1 2.6 20 8-27 31-50 (74)
293 PF02009 Rifin_STEVOR: Rifin/s 30.1 98 0.0021 25.2 4.3 21 89-109 265-285 (299)
294 TIGR02194 GlrX_NrdH Glutaredox 29.8 62 0.0013 19.6 2.5 49 4-52 7-56 (72)
295 KOG1814 Predicted E3 ubiquitin 29.7 36 0.00079 28.8 1.8 22 182-203 362-383 (445)
296 KOG3352 Cytochrome c oxidase, 29.6 23 0.00049 25.5 0.5 7 190-196 135-141 (153)
297 TIGR00365 monothiol glutaredox 29.6 44 0.00096 21.9 1.9 49 4-53 25-76 (97)
298 PF10146 zf-C4H2: Zinc finger- 29.5 47 0.001 25.9 2.3 24 177-201 198-221 (230)
299 smart00531 TFIIE Transcription 29.1 45 0.00098 23.9 2.0 15 189-203 124-138 (147)
300 PF15048 OSTbeta: Organic solu 29.1 1.2E+02 0.0026 21.2 3.9 10 76-85 33-42 (125)
301 PRK00420 hypothetical protein; 29.0 46 0.001 22.8 1.9 14 188-201 40-53 (112)
302 PF01485 IBR: IBR domain; Int 28.9 6.3 0.00014 23.3 -2.1 32 152-183 20-58 (64)
303 PLN02638 cellulose synthase A 28.9 79 0.0017 30.5 3.9 50 150-200 17-71 (1079)
304 KOG4443 Putative transcription 28.8 26 0.00057 31.4 0.9 28 171-198 41-72 (694)
305 cd00860 ThrRS_anticodon ThrRS 28.8 1.1E+02 0.0025 19.0 3.8 24 6-29 38-61 (91)
306 PRK01343 zinc-binding protein; 28.5 25 0.00053 20.9 0.5 10 190-199 11-20 (57)
307 TIGR01478 STEVOR variant surfa 28.4 83 0.0018 25.3 3.5 10 100-109 275-284 (295)
308 KOG4021 Mitochondrial ribosoma 28.3 23 0.00051 26.6 0.4 21 177-198 97-118 (239)
309 COG5319 Uncharacterized protei 28.3 59 0.0013 22.7 2.3 26 167-197 4-41 (142)
310 PF05283 MGC-24: Multi-glycosy 28.3 72 0.0016 24.0 3.0 15 95-109 170-184 (186)
311 PF12292 DUF3624: Protein of u 28.2 24 0.00051 22.3 0.4 21 176-196 3-23 (77)
312 PRK03732 hypothetical protein; 28.2 51 0.0011 22.7 2.0 17 10-26 71-87 (114)
313 PLN02195 cellulose synthase A 28.2 87 0.0019 29.9 4.1 51 149-199 5-59 (977)
314 PF03672 UPF0154: Uncharacteri 28.2 84 0.0018 19.1 2.7 15 95-109 8-22 (64)
315 KOG4577 Transcription factor L 28.1 14 0.0003 29.6 -0.8 41 151-201 93-133 (383)
316 PF12773 DZR: Double zinc ribb 28.0 39 0.00085 18.9 1.3 9 190-198 31-39 (50)
317 cd02066 GRX_family Glutaredoxi 28.0 58 0.0012 18.9 2.2 51 3-53 7-59 (72)
318 COG1656 Uncharacterized conser 28.0 16 0.00035 26.7 -0.5 12 150-161 97-108 (165)
319 KOG1356 Putative transcription 27.9 18 0.0004 33.3 -0.2 48 150-198 229-281 (889)
320 TIGR02189 GlrX-like_plant Glut 27.8 69 0.0015 21.1 2.6 50 3-53 15-70 (99)
321 KOG1296 Uncharacterized conser 27.6 81 0.0018 22.7 3.0 22 3-24 58-79 (161)
322 PF06750 DiS_P_DiS: Bacterial 27.3 49 0.0011 21.7 1.8 37 151-200 34-70 (92)
323 KOG1512 PHD Zn-finger protein 26.9 29 0.00064 27.8 0.8 31 151-181 315-345 (381)
324 PHA03099 epidermal growth fact 26.9 92 0.002 21.9 3.1 6 43-48 37-42 (139)
325 PF06937 EURL: EURL protein; 26.8 57 0.0012 26.0 2.3 42 151-192 31-74 (285)
326 PF01680 SOR_SNZ: SOR/SNZ fami 26.7 65 0.0014 24.1 2.5 21 7-27 22-42 (208)
327 PF09338 Gly_reductase: Glycin 26.7 38 0.00083 29.0 1.5 41 13-53 297-341 (428)
328 PRK00398 rpoP DNA-directed RNA 26.5 31 0.00068 19.1 0.7 13 190-202 23-35 (46)
329 PRK00967 hypothetical protein; 26.5 57 0.0012 22.0 2.0 16 12-27 66-81 (105)
330 PF13453 zf-TFIIB: Transcripti 26.5 28 0.00061 18.8 0.4 12 190-201 1-12 (41)
331 COG3071 HemY Uncharacterized e 26.4 1.6E+02 0.0035 24.9 5.0 27 49-75 8-34 (400)
332 KOG0086 GTPase Rab4, small G p 26.0 84 0.0018 23.0 2.9 47 8-54 71-124 (214)
333 PRK10638 glutaredoxin 3; Provi 26.0 56 0.0012 20.5 1.9 49 4-53 10-61 (83)
334 KOG4323 Polycomb-like PHD Zn-f 25.9 20 0.00043 30.9 -0.3 46 150-197 168-224 (464)
335 cd00738 HGTP_anticodon HGTP an 25.7 1E+02 0.0022 19.3 3.2 23 7-29 42-64 (94)
336 PF13771 zf-HC5HC2H: PHD-like 25.5 41 0.00089 21.5 1.2 32 149-182 35-68 (90)
337 PF11084 DUF2621: Protein of u 25.5 1.2E+02 0.0025 21.4 3.3 14 83-96 8-21 (141)
338 PF07406 NICE-3: NICE-3 protei 25.5 35 0.00075 25.7 0.9 18 175-193 124-143 (186)
339 PTZ00370 STEVOR; Provisional 25.5 86 0.0019 25.3 3.1 9 101-109 272-280 (296)
340 KOG3726 Uncharacterized conser 25.4 37 0.00081 30.7 1.2 40 151-194 655-695 (717)
341 PRK11486 flagellar biosynthesi 25.4 2.4E+02 0.0052 19.7 5.4 19 92-110 26-44 (124)
342 PF02148 zf-UBP: Zn-finger in 25.2 37 0.0008 20.3 0.8 24 153-178 1-24 (63)
343 KOG3799 Rab3 effector RIM1 and 24.8 15 0.00033 25.8 -1.0 48 149-196 64-115 (169)
344 cd01407 SIR2-fam SIR2 family o 24.5 83 0.0018 24.1 2.9 36 165-200 109-145 (218)
345 KOG2071 mRNA cleavage and poly 24.4 39 0.00083 30.0 1.1 35 149-184 512-557 (579)
346 COG0393 Uncharacterized conser 24.3 65 0.0014 21.9 1.9 18 10-27 64-81 (108)
347 COG1622 CyoA Heme/copper-type 24.2 2E+02 0.0044 22.7 5.0 19 93-111 44-62 (247)
348 cd03061 GST_N_CLIC GST_N famil 23.9 1.7E+02 0.0037 19.1 3.9 60 3-63 19-83 (91)
349 PF14979 TMEM52: Transmembrane 23.8 2.7E+02 0.0059 20.1 5.0 7 78-84 20-26 (154)
350 TIGR02605 CxxC_CxxC_SSSS putat 23.8 22 0.00049 20.2 -0.3 27 168-196 8-34 (52)
351 PF02662 FlpD: Methyl-viologen 23.8 74 0.0016 22.1 2.3 18 12-29 45-62 (124)
352 PF06667 PspB: Phage shock pro 23.7 2E+02 0.0043 18.1 5.0 6 123-128 34-39 (75)
353 PRK10824 glutaredoxin-4; Provi 23.5 49 0.0011 22.7 1.3 48 5-53 29-79 (115)
354 COG1908 FrhD Coenzyme F420-red 23.3 78 0.0017 22.0 2.2 51 12-63 46-115 (132)
355 PF02146 SIR2: Sir2 family; I 23.2 77 0.0017 23.3 2.4 36 165-200 105-141 (178)
356 PRK10697 DNA-binding transcrip 23.1 2.6E+02 0.0055 19.4 4.7 8 78-85 31-38 (118)
357 PRK02877 hypothetical protein; 23.1 97 0.0021 21.0 2.6 17 11-27 65-81 (106)
358 cd00858 GlyRS_anticodon GlyRS 22.9 1.2E+02 0.0025 20.7 3.1 23 7-29 65-87 (121)
359 PF07234 DUF1426: Protein of u 22.9 1.3E+02 0.0028 19.9 3.1 17 76-92 12-28 (117)
360 PRK09458 pspB phage shock prot 22.8 1E+02 0.0023 19.4 2.5 7 124-130 35-41 (75)
361 COG5415 Predicted integral mem 22.6 25 0.00054 26.9 -0.3 33 166-198 190-224 (251)
362 PF08882 Acetone_carb_G: Aceto 22.5 55 0.0012 22.3 1.3 13 165-177 23-35 (112)
363 PF06305 DUF1049: Protein of u 22.4 1.8E+02 0.004 17.2 5.0 15 66-80 6-20 (68)
364 COG2824 PhnA Uncharacterized Z 22.4 46 0.001 22.4 0.9 14 151-164 4-17 (112)
365 PF09889 DUF2116: Uncharacteri 22.2 1.5E+02 0.0032 17.7 3.0 11 50-60 20-30 (59)
366 TIGR01367 pyrE_Therm orotate p 22.0 43 0.00094 25.1 0.9 13 190-202 171-183 (187)
367 PF01299 Lamp: Lysosome-associ 22.0 63 0.0014 26.2 1.9 7 101-107 290-296 (306)
368 PLN02424 ketopantoate hydroxym 21.7 23 0.0005 29.1 -0.7 49 9-60 185-236 (332)
369 PLN02248 cellulose synthase-li 21.7 71 0.0015 30.9 2.3 32 168-200 145-178 (1135)
370 PRK14022 UDP-N-acetylmuramoyla 21.7 1.5E+02 0.0033 25.7 4.3 46 12-57 62-122 (481)
371 TIGR02181 GRX_bact Glutaredoxi 21.7 62 0.0014 19.8 1.5 49 4-53 7-58 (79)
372 PLN02417 dihydrodipicolinate s 21.6 86 0.0019 25.1 2.6 18 10-27 87-104 (280)
373 PF15446 zf-PHD-like: PHD/FYVE 21.6 46 0.00099 24.5 0.9 30 153-182 2-34 (175)
374 PRK11595 DNA utilization prote 21.5 60 0.0013 25.0 1.6 38 152-198 7-44 (227)
375 PF04689 S1FA: DNA binding pro 21.3 98 0.0021 18.8 2.1 23 85-107 18-40 (69)
376 KOG2462 C2H2-type Zn-finger pr 21.2 47 0.001 26.5 0.9 49 149-201 160-228 (279)
377 COG5216 Uncharacterized conser 21.1 41 0.00088 20.0 0.4 34 163-197 17-53 (67)
378 COG3684 LacD Tagatose-1,6-bisp 21.1 85 0.0018 25.1 2.3 20 7-26 244-263 (306)
379 COG3089 Uncharacterized protei 21.0 1.9E+02 0.004 17.8 3.2 26 4-29 29-58 (72)
380 PRK12855 hypothetical protein; 21.0 1.1E+02 0.0025 20.5 2.6 17 11-27 65-81 (103)
381 PF08209 Sgf11: Sgf11 (transcr 21.0 36 0.00079 17.7 0.2 11 190-200 6-16 (33)
382 PRK10747 putative protoheme IX 21.0 3.9E+02 0.0084 22.5 6.5 13 60-72 19-31 (398)
383 KOG4218 Nuclear hormone recept 21.0 96 0.0021 25.8 2.6 21 150-171 15-35 (475)
384 TIGR00222 panB 3-methyl-2-oxob 20.7 27 0.00059 27.8 -0.5 48 10-60 164-214 (263)
385 PLN02400 cellulose synthase 20.4 97 0.0021 29.9 2.9 52 150-202 36-92 (1085)
386 PF07227 DUF1423: Protein of u 20.4 73 0.0016 27.4 1.9 31 151-182 129-163 (446)
387 PF15616 TerY-C: TerY-C metal 20.4 78 0.0017 22.3 1.8 43 150-202 77-119 (131)
388 PF13913 zf-C2HC_2: zinc-finge 20.4 36 0.00077 16.3 0.1 10 190-199 4-13 (25)
389 KOG2113 Predicted RNA binding 20.3 95 0.0021 25.4 2.4 44 149-198 342-386 (394)
390 PF01906 YbjQ_1: Putative heav 20.1 87 0.0019 20.9 2.0 15 12-26 66-80 (105)
391 cd00729 rubredoxin_SM Rubredox 20.1 49 0.0011 17.1 0.6 8 190-197 20-27 (34)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=288.92 Aligned_cols=200 Identities=32% Similarity=0.634 Sum_probs=158.6
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee-CCCCCeeeEEEEchhhHHHHHHHhhcCCCceEEec-cc--c
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT-YPEGANVPAFYVTLETGAYLKEHARGEAGECCIFP-LS--Y 76 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~-~~~~~~Ip~v~v~~~~g~~L~~~~~~~~~~~~~~p-~~--~ 76 (214)
|+||+|+|.+|+++||++|++|+||||+.+.+.++.|. +..++.|+++||+...|+.|.++.......+...| +. .
T Consensus 85 I~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~~~~~~ 164 (348)
T KOG4628|consen 85 IRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPLGFDTS 164 (348)
T ss_pred EEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccccccCC
Confidence 58999999999999999999999999988776677665 77889999999999999999998877766666666 33 7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHhcCCceeeeccccccCCCCCcccccc
Q 028085 77 AWNKHVEKIIVWGMLLLFVISIPLLFWFARKLYPIDSPRRHRPEQTRQLPRSTVNALPSFVFSSVTSVRCHGRETLCSIC 156 (214)
Q Consensus 77 ~~~~~~~~i~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC 156 (214)
.|++..+ .++.++. +..++++++++++.+.....|.. .+.+++.++.++++|...|.+....+.. +.|+||
T Consensus 165 ~ws~~~~--~~i~~l~--v~~il~~~f~i~~~~~~~~~r~~--~~~~r~~k~~l~~~p~~~f~~~~~~~~~---~~CaIC 235 (348)
T KOG4628|consen 165 PWSILAI--SLISLLT--VVAILVTCFFIYRIRRLIRARNR--LRRNRLIKRLLKKLPVRTFTKGDDEDAT---DTCAIC 235 (348)
T ss_pred cchhhhh--hhhhHHH--HHHHHHHHHHHHHHHHHHHHHhH--hhhhhhHHHHHhhCCcEEeccccccCCC---ceEEEe
Confidence 8887433 3444444 44445555555554332211221 4567899999999999999887665432 589999
Q ss_pred cccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccCCCCCcc
Q 028085 157 LEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNEGNEQ 209 (214)
Q Consensus 157 l~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~~~~~ 209 (214)
||+|++||++|.|||+|.||..||++||...++.||+||+++.+..+.+...+
T Consensus 236 lEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 236 LEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred ecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence 99999999999999999999999999999987779999999988877666554
No 2
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-20 Score=144.87 Aligned_cols=52 Identities=44% Similarity=1.123 Sum_probs=46.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...+|+||+++|..+|+++.|||.|.||..|+++|+...+..||+||.+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4478999999999999999999999999999999998555569999998864
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.74 E-value=7.2e-19 Score=100.78 Aligned_cols=44 Identities=52% Similarity=1.260 Sum_probs=39.6
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
++|+||++++.+++.+..++|||.||.+|+.+|++.+.+ ||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~-CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNS-CPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB--TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCc-CCccC
Confidence 369999999999999999999999999999999998765 99998
No 4
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.71 E-value=3.3e-17 Score=114.97 Aligned_cols=64 Identities=34% Similarity=0.468 Sum_probs=54.7
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee---------CCCCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT---------YPEGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~---------~~~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
|+||+|+|.+|+++||++||+||||||+.+. +++.|. ..++++||+++|++++|+.|++.+..+
T Consensus 48 v~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g 120 (127)
T cd02125 48 LDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-PLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNG 120 (127)
T ss_pred EECCCcCHHHHHHHHHHCCCcEEEEEECCCC-ccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcC
Confidence 5899999999999999999999999998765 566663 134578999999999999999987643
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.70 E-value=7.9e-17 Score=111.66 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=55.4
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCC--CCeeeeeC---CCCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKK--SPLIYMTY---PEGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~--~~~~~m~~---~~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
|+||+|+|.+|+++||++||+||||||+.+. ...+.|.. ...++||+++|++.+|+.|++.+..+
T Consensus 40 v~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g 109 (118)
T cd02127 40 IERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERL 109 (118)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcC
Confidence 5899999999999999999999999997643 35667763 35689999999999999999988644
No 6
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.69 E-value=1.4e-16 Score=115.59 Aligned_cols=73 Identities=41% Similarity=0.640 Sum_probs=60.1
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeC-C---CCCeeeEEEEchhhHHHHHHHhhcCCCceEEeccc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTY-P---EGANVPAFYVTLETGAYLKEHARGEAGECCIFPLS 75 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~-~---~~~~Ip~v~v~~~~g~~L~~~~~~~~~~~~~~p~~ 75 (214)
|+||+|+|.+|+++||++||+||||||+.++ ++..|.. . .+++||+++|++++|+.|++.+..... +...|+.
T Consensus 73 V~RG~CtF~~Kv~nAq~aGA~avII~n~~~~-~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~-~~~~~~~ 149 (153)
T cd02123 73 IRRGNCSFETKVRNAQRAGYKAAIVYNDESN-DLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG-VILIPDL 149 (153)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCC-cceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc-EEECCCC
Confidence 5899999999999999999999999998765 5667762 2 368999999999999999998876555 4444443
No 7
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.69 E-value=8.7e-17 Score=110.81 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=51.8
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCee-eeeCCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLI-YMTYPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~-~m~~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
|+||+|+|.+|+++||++||+||||||+.+..+.. ..+....++||++||++++|+.|.+.+.
T Consensus 50 V~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 50 VMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred EECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhc
Confidence 58999999999999999999999999987642111 1112366899999999999999998876
No 8
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.68 E-value=1.6e-16 Score=113.06 Aligned_cols=64 Identities=23% Similarity=0.354 Sum_probs=56.6
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCC-CCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhhc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRK-KSPLIYMTYPEGANVPAFYVTLETGAYLKEHARG 64 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~-~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~~ 64 (214)
|+||+|+|.+|+++||++||+||||||+.+ ....+.|.......||+++|++.+|+.|++.+..
T Consensus 66 V~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 66 IQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHc
Confidence 589999999999999999999999999876 4457788866666899999999999999998853
No 9
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.67 E-value=1.9e-16 Score=109.46 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=54.6
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee---CCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT---YPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~---~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
|+||+|+|.+|+++||++||+||||||+.+...++.|. ....++||+++|++++|+.|+.++.
T Consensus 45 V~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 45 VLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 58999999999999999999999999987654566665 3456899999999999999998775
No 10
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.67 E-value=2.9e-16 Score=110.43 Aligned_cols=64 Identities=27% Similarity=0.413 Sum_probs=54.2
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCC-----CeeeeeCC----CCCeeeEEEEchhhHHHHHHHhhc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKS-----PLIYMTYP----EGANVPAFYVTLETGAYLKEHARG 64 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~-----~~~~m~~~----~~~~Ip~v~v~~~~g~~L~~~~~~ 64 (214)
|+||+|+|.+|+++||++||.||||||+.+++ .++.|... +.++||+++|++.+|+.|++.+..
T Consensus 46 v~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 46 MERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred EECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 58999999999999999999999999876542 45667622 368999999999999999998853
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.7e-16 Score=122.50 Aligned_cols=53 Identities=32% Similarity=0.908 Sum_probs=44.2
Q ss_pred CCccccccccc-ccCC---------CceEEecCCCccChhhHHHHHHhCCCCcccccccc-cccc
Q 028085 149 RETLCSICLED-YREG---------ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI-RRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~-~~~~---------~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i-~~~~ 202 (214)
+|..|.||+|+ +..+ .++..|||||+||-+|++.|++++++ ||+||.++ ..+.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPICr~p~ifd~~ 349 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPICRRPVIFDQS 349 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCcccCccccccC
Confidence 67899999999 4444 25689999999999999999999887 99999994 4433
No 12
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.58 E-value=5.7e-15 Score=105.60 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=52.5
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee---C--CCCCeeeEEEEchhhHHHHHHHhhc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT---Y--PEGANVPAFYVTLETGAYLKEHARG 64 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~---~--~~~~~Ip~v~v~~~~g~~L~~~~~~ 64 (214)
|+||+|+|.+|+++||++||+||||||+.+. +..|. + ...++||+++|++.+|+.|++.+..
T Consensus 65 V~RG~C~F~~K~~nA~~aGA~avIv~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~ 131 (139)
T cd02132 65 VERGECAFTEKAKIAEAGGASALLIINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQ 131 (139)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHc
Confidence 5899999999999999999999999997653 45554 1 1257999999999999999998864
No 13
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.58 E-value=6.4e-15 Score=104.35 Aligned_cols=63 Identities=25% Similarity=0.244 Sum_probs=51.8
Q ss_pred Ccccccc-----HHHHHHHHHHcCCcEEEEEeCCCCCCeee--eeCC-CCCeeeEEEEchhhHHHHHHHhh
Q 028085 1 MIRGQCN-----FSYKIQNAQAAGYDAAIVYALRKKSPLIY--MTYP-EGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 1 v~rg~C~-----f~~K~~~a~~~ga~aviv~~~~~~~~~~~--m~~~-~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
|+||+|+ |.+|+++|+++||+||||||+.+.+..+. +.+. ..++||+++|++.+|+.|++.+.
T Consensus 62 I~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 62 IERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred EECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhc
Confidence 5899999 99999999999999999999874322222 2333 36899999999999999998875
No 14
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.57 E-value=1.4e-15 Score=96.40 Aligned_cols=46 Identities=37% Similarity=0.869 Sum_probs=35.6
Q ss_pred CCcccccccccccCC----------CceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 149 RETLCSICLEDYREG----------ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----------~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
.++.|+||++.+.+. -.+...+|||.||..||.+|++.+++ ||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~-CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNT-CPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB--TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCc-CCCCC
Confidence 345699999999322 24556689999999999999988775 99998
No 15
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.53 E-value=6.2e-15 Score=112.96 Aligned_cols=73 Identities=26% Similarity=0.549 Sum_probs=50.5
Q ss_pred CCHHHHhcCCceeeeccccccCCCCCcccccccccccCCCc----e-EEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 125 LPRSTVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGEN----L-RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----~-~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..+..++.+|....+-......+ .+.+|+||++.+.+++. + ..++|+|.||.+||.+|+..+.+ ||+||.++.
T Consensus 150 ~~~~~i~~lp~vl~~~e~~~~~~-~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~t-CPlCR~~~~ 227 (238)
T PHA02929 150 NYKKFLKTIPSVLSEYEKLYNRS-KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNT-CPVCRTPFI 227 (238)
T ss_pred hhHHHHHhcchhhhhhhhhhcCC-CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCC-CCCCCCEee
Confidence 34556666666544332222222 45789999999876531 2 34569999999999999987655 999999875
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.47 E-value=1.2e-13 Score=93.67 Aligned_cols=62 Identities=29% Similarity=0.546 Sum_probs=48.3
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCC-CCCeeeeeCCCCCeeeEEEEchhhHHHHHHHh
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRK-KSPLIYMTYPEGANVPAFYVTLETGAYLKEHA 62 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~-~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~ 62 (214)
++||+|+|.+|+++|+++||+|+||||..+ ......+......+||+++|++++|+.|++++
T Consensus 39 v~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 39 VERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp EESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 479999999999999999999999999222 11233334566789999999999999999864
No 17
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.47 E-value=2e-13 Score=95.69 Aligned_cols=65 Identities=32% Similarity=0.378 Sum_probs=52.2
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeee-eCCCCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYM-TYPEGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m-~~~~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
|+||+|+|.+|+++|+++||+|+||||+.+....... ...+...||+++|++++|+.|++.+..+
T Consensus 50 v~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g 115 (122)
T cd02130 50 IERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANG 115 (122)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcC
Confidence 5899999999999999999999999997732222212 2334678999999999999999987643
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6e-14 Score=108.04 Aligned_cols=50 Identities=34% Similarity=0.788 Sum_probs=43.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
....|.+||+...+. ..+||||+||+.||..|...... ||+||.....++
T Consensus 238 a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~e-CPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAE-CPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccC-CCcccccCCCcc
Confidence 557899999998844 79999999999999999988776 999999876543
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.41 E-value=1.3e-13 Score=101.42 Aligned_cols=51 Identities=31% Similarity=0.745 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---------------CCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---------------GTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---------------~~~CP~Cr~~i~~~~ 202 (214)
++.+|+||++.+++ ...++|||+||+.||..|+... ...||+||..+....
T Consensus 17 ~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 56789999999874 4778999999999999998531 226999999987644
No 20
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.41 E-value=9.9e-13 Score=92.18 Aligned_cols=65 Identities=28% Similarity=0.282 Sum_probs=52.3
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCee-eeeCC-CCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLI-YMTYP-EGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~-~m~~~-~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
++||+|+|.+|+++|+++||+|+|+||+.+..... .+... ...+||+++|++++|+.|.+.+..+
T Consensus 49 v~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g 115 (122)
T cd04816 49 VDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAG 115 (122)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCC
Confidence 47999999999999999999999999987642211 12222 4578999999999999999988643
No 21
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.40 E-value=1.4e-12 Score=90.99 Aligned_cols=69 Identities=32% Similarity=0.368 Sum_probs=57.0
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCC-CCCeeeEEEEchhhHHHHHHHhh-cCCCce
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYP-EGANVPAFYVTLETGAYLKEHAR-GEAGEC 69 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~-~~~~Ip~v~v~~~~g~~L~~~~~-~~~~~~ 69 (214)
++||+|+|.+|+.+|+++||+|+|+||+.+....+.|... ....||+++|++++|..|++++. ++++.+
T Consensus 46 ~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v 116 (118)
T cd04818 46 IDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTV 116 (118)
T ss_pred EECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 4789999999999999999999999998775445666643 35689999999999999999987 444443
No 22
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.37 E-value=4.1e-13 Score=78.91 Aligned_cols=46 Identities=39% Similarity=0.947 Sum_probs=38.5
Q ss_pred CcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
+..|.||++... .+..+||||. |+..|+..|+..... ||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~-CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKK-CPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSB-BTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCC-CCcCChhhc
Confidence 357999999976 5789999999 999999999986555 999999885
No 23
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.36 E-value=2.6e-12 Score=90.49 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=48.4
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
|+||+|+|.+|+++|+++||+||||||+.+. .. .+...+...+|++++ +++|+.|++.+..+
T Consensus 61 v~rg~c~f~~K~~nA~~aGA~aviiyn~~~~-~~-~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G 122 (129)
T cd02124 61 VRRGTCTFATKAANAAAKGAKYVLIYNNGSG-PT-DQVGSDADSIIAAVT-PEDGEAWIDALAAG 122 (129)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEECCCC-cc-cccCCCCcceeeEEe-HHHHHHHHHHHhcC
Confidence 5899999999999999999999999998764 22 333333445666666 99999999987533
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.2e-13 Score=99.64 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC--CccccccccccccC
Q 028085 148 GRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT--FCPVCRHEIRRSTS 203 (214)
Q Consensus 148 ~~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~~i~~~~~ 203 (214)
+...+|.||||.-+ ..+++.|||+|||.||-+||..+.. .||+||..+...+-
T Consensus 45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 36679999999977 4489999999999999999988643 59999998876653
No 25
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.32 E-value=1.5e-12 Score=74.64 Aligned_cols=45 Identities=49% Similarity=1.122 Sum_probs=36.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
+|+||++.+. +.+..++|||.||..|++.|+...+..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34555669999999999999987444599998764
No 26
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-12 Score=93.73 Aligned_cols=51 Identities=31% Similarity=0.633 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+|||+.+... .+.-+.|||+||+.||+.-++.... ||+||+.|+.+
T Consensus 130 ~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCC-CCCcccccchh
Confidence 457899999999865 3356889999999999999988776 99999977644
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.30 E-value=1.4e-12 Score=72.47 Aligned_cols=39 Identities=41% Similarity=1.094 Sum_probs=32.2
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
|+||++.+.+ .+..++|||.||++|+.+|++.+ ..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~-~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKN-PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCT-SB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCc-CCCcCC
Confidence 8999999884 45789999999999999999984 459998
No 28
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.26 E-value=2.8e-11 Score=87.18 Aligned_cols=67 Identities=31% Similarity=0.409 Sum_probs=54.0
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhhcCCCceE
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHARGEAGECC 70 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~~~~~~~~ 70 (214)
++||+|+|.+|+++|+++||+|+|+||+.+. ...|.......||+++|++++|+.|.+++.. ...+.
T Consensus 53 ~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~--~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~-~~~i~ 119 (143)
T cd02133 53 IQRGEITFVEKIANAKAAGAVGVIIYNNVDG--LIPGTLGEAVFIPVVFISKEDGEALKAALES-SKKLT 119 (143)
T ss_pred EECCCCCHHHHHHHHHHCCCeEEEEeecCCC--cccccCCCCCeEeEEEecHHHHHHHHHHHhC-CCeEE
Confidence 4799999999999999999999999998764 2334322346899999999999999999865 44444
No 29
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=101.03 Aligned_cols=73 Identities=25% Similarity=0.463 Sum_probs=58.8
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee-----CCCCCeeeEEEEchhhHHHHHHHh-hcCCCceEEecc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT-----YPEGANVPAFYVTLETGAYLKEHA-RGEAGECCIFPL 74 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~-----~~~~~~Ip~v~v~~~~g~~L~~~~-~~~~~~~~~~p~ 74 (214)
+.||+|+|.+|++.||++||+|+++-|+.++ +..|. ...+++||++|+++++|..|.+.. .+..+++.+..|
T Consensus 101 v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d--~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP 178 (541)
T KOG2442|consen 101 VFRGNCSFTEKAKLAQAAGASALLIINNKKD--LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP 178 (541)
T ss_pred EecccceeehhhhhhhhcCceEEEEEcCchh--hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC
Confidence 4699999999999999999999999997553 44443 445789999999999999998754 456677777655
Q ss_pred c
Q 028085 75 S 75 (214)
Q Consensus 75 ~ 75 (214)
.
T Consensus 179 k 179 (541)
T KOG2442|consen 179 K 179 (541)
T ss_pred C
Confidence 4
No 30
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.24 E-value=4.8e-12 Score=71.09 Aligned_cols=39 Identities=36% Similarity=0.886 Sum_probs=31.2
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCC---Ccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT---FCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~---~CP~C 194 (214)
|+||++.|. +++.|+|||.|+..||..|++.... .||.|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 6689999999999999999987643 59987
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.23 E-value=7.7e-12 Score=79.73 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=37.9
Q ss_pred Cccccccccccc--------CCC--ceEEecCCCccChhhHHHHHHhCC--CCccccccccc
Q 028085 150 ETLCSICLEDYR--------EGE--NLRVLPCRHEFHSSCVDSWLIRWG--TFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~--------~~~--~~~~l~C~H~FH~~Ci~~Wl~~~~--~~CP~Cr~~i~ 199 (214)
++.|.||...|. +|| .+..-.|+|.||..||.+|+..++ ..||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 567999888876 223 333335999999999999998753 37999999764
No 32
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.22 E-value=4.7e-11 Score=84.03 Aligned_cols=63 Identities=30% Similarity=0.447 Sum_probs=51.6
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeC----CCCCeeeEEEEchhhHHHHHHHhhc
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTY----PEGANVPAFYVTLETGAYLKEHARG 64 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~----~~~~~Ip~v~v~~~~g~~L~~~~~~ 64 (214)
++||+|+|.+|+++|+++||+|+||||+.+. ....|.. .....||+++|+.++|+.|.+++..
T Consensus 52 ~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~-~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~ 118 (126)
T cd00538 52 VRRGGCSFSEKVKNAQKAGAKAVIIYNNGDD-PGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEA 118 (126)
T ss_pred EECCCcCHHHHHHHHHHCCCEEEEEEECCCC-cccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhc
Confidence 4689999999999999999999999998764 2223321 2456899999999999999998863
No 33
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.21 E-value=7.5e-12 Score=71.34 Aligned_cols=44 Identities=34% Similarity=0.846 Sum_probs=37.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
.|.+|++.|.+.+..+.|+|||+|+..|+..+... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~-~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK-SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC-CCCCcCCCC
Confidence 49999999966668899999999999999998833 335999985
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-11 Score=106.88 Aligned_cols=52 Identities=46% Similarity=1.006 Sum_probs=45.2
Q ss_pred CCcccccccccccCCCc--eEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGEN--LRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~--~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||+|.+..++. +..|||+|+||..|+..|++++++ ||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt-CP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT-CPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc-CCcchhhhhcc
Confidence 46789999999998765 789999999999999999999776 99999955443
No 35
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.15 E-value=2.4e-11 Score=68.28 Aligned_cols=40 Identities=40% Similarity=1.089 Sum_probs=33.6
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHh-CCCCcccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR-WGTFCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~-~~~~CP~C 194 (214)
|+||++.+.+. ...++|||.||.+|+.+|++. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998844 258899999999999999994 34479998
No 36
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.13 E-value=4.7e-11 Score=65.98 Aligned_cols=39 Identities=46% Similarity=1.162 Sum_probs=33.0
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
|+||++... .+..++|+|.||..|++.|+...+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999943 678999999999999999998444469987
No 37
>PHA02926 zinc finger-like protein; Provisional
Probab=99.12 E-value=3.7e-11 Score=89.58 Aligned_cols=51 Identities=31% Similarity=0.785 Sum_probs=38.1
Q ss_pred CCcccccccccccCC----C-ceEEe-cCCCccChhhHHHHHHhCC-----CCccccccccc
Q 028085 149 RETLCSICLEDYREG----E-NLRVL-PCRHEFHSSCVDSWLIRWG-----TFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~-~~~~l-~C~H~FH~~Ci~~Wl~~~~-----~~CP~Cr~~i~ 199 (214)
.+.+|+||+|..-++ + ..-.| +|+|.||..||..|...+. ..||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999986432 1 22345 5999999999999998632 25999999765
No 38
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.3e-11 Score=97.32 Aligned_cols=51 Identities=33% Similarity=0.832 Sum_probs=39.1
Q ss_pred CCcccccccccccCC--------------CceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREG--------------ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~--------------~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
....|+||+.+..-. .....+||.|+||..|+.+|+...+-.||.||+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 345799999875311 123467999999999999999965545999999875
No 39
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.05 E-value=9e-10 Score=77.63 Aligned_cols=66 Identities=23% Similarity=0.080 Sum_probs=51.7
Q ss_pred Cccccc--cHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee--C--CCCCeeeEEEEchhhHHHHHHHhhcCC
Q 028085 1 MIRGQC--NFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT--Y--PEGANVPAFYVTLETGAYLKEHARGEA 66 (214)
Q Consensus 1 v~rg~C--~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~--~--~~~~~Ip~v~v~~~~g~~L~~~~~~~~ 66 (214)
|+||.| +|.+|+++|+++||+|+|+||+.++.-..... . .....||++.|+.++|+.|...++.+.
T Consensus 50 v~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 50 VKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred EEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 478999 99999999999999999999876542111111 1 234689999999999999999887543
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.6e-11 Score=91.12 Aligned_cols=54 Identities=26% Similarity=0.698 Sum_probs=44.9
Q ss_pred CCcccccccccccCCC-------ceEEecCCCccChhhHHHHHHhCCC-Ccccccccccccc
Q 028085 149 RETLCSICLEDYREGE-------NLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~-------~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~~ 202 (214)
++..|+||-..+.... ....|.|+|+||+.||..|....+. +||.|+..+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 6789999998876553 6789999999999999999876644 7999998876554
No 41
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.05 E-value=1.8e-10 Score=71.02 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=40.7
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
..|+||.+.+.+. ..++|||+|++.||.+|++.+. .||+|+.++....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHG-TDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCChhh
Confidence 4699999999853 7889999999999999998855 4999999885443
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.05 E-value=1.3e-10 Score=65.24 Aligned_cols=39 Identities=36% Similarity=0.769 Sum_probs=23.5
Q ss_pred cccccccccCCC-ceEEecCCCccChhhHHHHHHhCC---CCcc
Q 028085 153 CSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWG---TFCP 192 (214)
Q Consensus 153 C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~---~~CP 192 (214)
|+||.+ |.+.+ .++.|+|||+|+++|+++++..+. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75543 678899999999999999998652 2587
No 43
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.6e-10 Score=87.10 Aligned_cols=51 Identities=31% Similarity=0.708 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHH-HHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDS-WLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~-Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++... ....++|||+||+.||.. |-..+-..||+||+....++
T Consensus 214 ~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5678999999988 558999999999999999 87664446999999876543
No 44
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.90 E-value=1.2e-09 Score=67.75 Aligned_cols=47 Identities=30% Similarity=0.640 Sum_probs=33.1
Q ss_pred ccccccccCCCceE-Ee-cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 154 SICLEDYREGENLR-VL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 154 ~ICl~~~~~~~~~~-~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+-|-....++++.. .. -|.|.||..||.+||.++.. ||++|++..-.
T Consensus 35 ~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~-CPld~q~w~~~ 83 (88)
T COG5194 35 PECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGV-CPLDRQTWVLA 83 (88)
T ss_pred cccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCC-CCCCCceeEEe
Confidence 33333333455332 23 49999999999999999777 99999976443
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.89 E-value=1.4e-09 Score=63.08 Aligned_cols=43 Identities=30% Similarity=0.893 Sum_probs=34.2
Q ss_pred ccccccccccCCCceEEecCC-----CccChhhHHHHHHhCCC-Cccccc
Q 028085 152 LCSICLEDYREGENLRVLPCR-----HEFHSSCVDSWLIRWGT-FCPVCR 195 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~-----H~FH~~Ci~~Wl~~~~~-~CP~Cr 195 (214)
.|.||++ ..+++....+||. |.+|.+|+++|+...+. +||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4444566789984 89999999999987643 699995
No 46
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=8.2e-10 Score=90.86 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+||++.|.. ...++|||.||..|+..|+..... ||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~-CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPK-CPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCC-CCCCCCccccc
Confidence 45789999999973 367899999999999999987554 99999987643
No 47
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=98.88 E-value=4.8e-10 Score=78.95 Aligned_cols=62 Identities=31% Similarity=0.475 Sum_probs=50.5
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCC----Ceeeee---CCCCCeeeEEEEchhhHHHHHHHh
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKS----PLIYMT---YPEGANVPAFYVTLETGAYLKEHA 62 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~----~~~~m~---~~~~~~Ip~v~v~~~~g~~L~~~~ 62 (214)
++||+|||..|.++++++||.|+||.|+..++ ..+.|- +-...+||++|+...+|-.++..+
T Consensus 93 ~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL 161 (193)
T KOG3920|consen 93 MERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSL 161 (193)
T ss_pred EecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhH
Confidence 58999999999999999999999999865433 256775 234579999999999998776655
No 48
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-09 Score=90.79 Aligned_cols=50 Identities=28% Similarity=0.563 Sum_probs=41.2
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC----Ccccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT----FCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~----~CP~Cr~~i~~~~ 202 (214)
+..|+|||+... ....+.|||+||..||-+++..... .||+||..|..+.
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 678999999987 4467779999999999999987521 6999999887643
No 49
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.79 E-value=2e-08 Score=70.65 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=50.4
Q ss_pred ccccc-cHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 2 IRGQC-NFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 2 ~rg~C-~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
+||.| +|.+|+++|+++||.|+|++|+.++. ..+. .....||+++|++++|+.|++++..+
T Consensus 58 ~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~--~~~~-~~~~~iP~v~I~~~~g~~l~~y~~~~ 119 (126)
T cd02120 58 DRGGNTSRVAKGDAVKAAGGAGMILANDPTDG--LDVV-ADAHVLPAVHVDYEDGTAILSYINST 119 (126)
T ss_pred eCCCCccHHHHHHHHHHcCCcEEEEEecCCCC--ceec-ccccccceEEECHHHHHHHHHHHHcC
Confidence 68899 99999999999999999999977652 1222 12467999999999999999998754
No 50
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-09 Score=66.55 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=36.6
Q ss_pred Cccccccccccc---------CCCceEEec-CCCccChhhHHHHHHhCCC--Cccccccccc
Q 028085 150 ETLCSICLEDYR---------EGENLRVLP-CRHEFHSSCVDSWLIRWGT--FCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~---------~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~~i~ 199 (214)
+..|-||.-.|. .+|-+..+- |.|.||..||.+|+....+ .||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 346888877764 233333443 9999999999999987644 6999998754
No 51
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.71 E-value=3.2e-08 Score=73.25 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=49.2
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCC-C-----------------eeeee------------CC-CCCeeeEEE
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKS-P-----------------LIYMT------------YP-EGANVPAFY 49 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~-~-----------------~~~m~------------~~-~~~~Ip~v~ 49 (214)
++||+|+|.+|+++|+++||+|||+|++..+. . ..+++ +. .--+||++-
T Consensus 61 vr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~P 140 (183)
T cd02128 61 VRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQT 140 (183)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEec
Confidence 47899999999999999999999999874210 0 00111 00 113699999
Q ss_pred EchhhHHHHHHHhhcCC
Q 028085 50 VTLETGAYLKEHARGEA 66 (214)
Q Consensus 50 v~~~~g~~L~~~~~~~~ 66 (214)
|++++++.|++.+.+..
T Consensus 141 IS~~da~~lL~~l~G~~ 157 (183)
T cd02128 141 ISAAAAAKLLSKMGGPV 157 (183)
T ss_pred cCHHHHHHHHHHcCCCC
Confidence 99999999999887543
No 52
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.67 E-value=4.9e-08 Score=69.38 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=50.8
Q ss_pred Cccccc------cHHHH-------HHHHHHcCCcEEEEEeCCCCC---C-eeeeeC-CCCCeeeEEEEchhhHHHHHHHh
Q 028085 1 MIRGQC------NFSYK-------IQNAQAAGYDAAIVYALRKKS---P-LIYMTY-PEGANVPAFYVTLETGAYLKEHA 62 (214)
Q Consensus 1 v~rg~C------~f~~K-------~~~a~~~ga~aviv~~~~~~~---~-~~~m~~-~~~~~Ip~v~v~~~~g~~L~~~~ 62 (214)
|+||.| +|..| .+.|+++||.|+|+||+.+.+ . ...+.. .....||++.|+.++|..|...+
T Consensus 45 v~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l 124 (134)
T cd04815 45 FNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLA 124 (134)
T ss_pred ecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHH
Confidence 478999 99999 799999999999999965331 1 222333 33468999999999999999888
Q ss_pred hcC
Q 028085 63 RGE 65 (214)
Q Consensus 63 ~~~ 65 (214)
+.+
T Consensus 125 ~~g 127 (134)
T cd04815 125 ARG 127 (134)
T ss_pred hCC
Confidence 643
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.64 E-value=1.7e-08 Score=63.95 Aligned_cols=50 Identities=32% Similarity=0.554 Sum_probs=38.7
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
...|+|+.+-+. .++.+|+||.|.+.||..|+..+..+||+|+.++....
T Consensus 4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 468999999999 55899999999999999999985556999999887654
No 54
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.1e-08 Score=80.03 Aligned_cols=51 Identities=37% Similarity=0.777 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccccC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
...+|.||+++-+ ...+|||+|. .|..|.+...-+.+. ||+||+++....+
T Consensus 289 ~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~-CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 289 SGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNN-CPICRQPIEELLE 340 (349)
T ss_pred CCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcC-CCccccchHhhhe
Confidence 4568999999987 4489999997 999999886644454 9999999876543
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.61 E-value=1.1e-08 Score=64.12 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=25.0
Q ss_pred CcccccccccccCCCce--EEe---cCCCccChhhHHHHHHhC---C----C---Cccccccccccc
Q 028085 150 ETLCSICLEDYREGENL--RVL---PCRHEFHSSCVDSWLIRW---G----T---FCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~--~~l---~C~H~FH~~Ci~~Wl~~~---~----~---~CP~Cr~~i~~~ 201 (214)
+.+|.||++.+.+++++ ..- .|++.||..||.+|+... + . .||.|+.+|.-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 35799999987633322 222 389999999999999752 1 1 599999988643
No 56
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=3.5e-08 Score=78.20 Aligned_cols=53 Identities=32% Similarity=0.683 Sum_probs=39.1
Q ss_pred Cccccccccc-ccCCC-ceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLED-YREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~-~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
+..||+|.++ |...+ .+..-+|||.||..|++..+......||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4679999996 33333 22333799999999999977555446999999886554
No 57
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.48 E-value=4.1e-08 Score=77.57 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=41.9
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
-..|.||.+.|. ...++||+|.||.-||...|..+-. ||.|+.++....
T Consensus 23 lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~-CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQ-CPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCC-CCceecccchhh
Confidence 357999999999 4489999999999999999977555 999999876543
No 58
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.1e-08 Score=62.51 Aligned_cols=47 Identities=30% Similarity=0.685 Sum_probs=34.5
Q ss_pred Ccccccccccc-------------cCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccc
Q 028085 150 ETLCSICLEDY-------------REGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~-------------~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
-+.|+||..-+ ..++-.... -|.|.||..||.+||++++. ||+|.++
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~v-CPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNV-CPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence 35799987442 222323333 49999999999999999887 9999765
No 59
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.45 E-value=3.8e-08 Score=86.98 Aligned_cols=49 Identities=35% Similarity=0.878 Sum_probs=38.0
Q ss_pred CCcccccccccccCCCceEEec------CCCccChhhHHHHHHhCCC-Cccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP------CRHEFHSSCVDSWLIRWGT-FCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~------C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~ 199 (214)
+..+||||+.-+..-| |.|| |+|-||..|+-+|+..... +||+||..++
T Consensus 1468 G~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5568999998765222 2333 8999999999999988644 7999998875
No 60
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.8e-08 Score=75.30 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=44.7
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccCCCC
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNEG 206 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~~ 206 (214)
..+|+||+..-. ....|+|+|.||.-||+.-.+..+..||+||.+|...-...+
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 468999999877 458999999999999999887776679999999987654433
No 61
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.43 E-value=8.5e-08 Score=78.49 Aligned_cols=48 Identities=33% Similarity=0.812 Sum_probs=37.8
Q ss_pred CCcccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.-.+|+||||.+-+.- -++.+.|.|.||..|+..|. ..+ ||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~s-cpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSS-CPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCc-ChhhhhhcC
Confidence 3368999999986552 34566799999999999997 344 999998654
No 62
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.42 E-value=1e-07 Score=73.84 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.-..|-||-+.+. ....++|||.||.-||...|..+-. ||+||.+..
T Consensus 24 s~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~-CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPF-CPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee---cceecccccchhHHHHHHHhcCCCC-CccccccHH
Confidence 3468999999999 4488999999999999999987655 999998754
No 63
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-07 Score=76.26 Aligned_cols=45 Identities=29% Similarity=0.834 Sum_probs=35.3
Q ss_pred cccccccccccCCCceEEec-CCCccChhhHHHHHHhCCC--Cccccc
Q 028085 151 TLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGT--FCPVCR 195 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~--~CP~Cr 195 (214)
-.|.||.+-+...+.+.-+. |||+||..|+.+|+...-+ .||.||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 47999955555445666665 9999999999999987533 599999
No 64
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.1e-07 Score=75.32 Aligned_cols=44 Identities=43% Similarity=0.871 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
+...|+||++.|... ..+||+|.||..|+..++. ....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 557899999999966 8999999999999999997 3446999993
No 65
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.8e-07 Score=53.83 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.+++|.||+|.-.+. ....|||. .|.+|-.+.++-..-.||+||+++.
T Consensus 6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 447899999986643 34569996 8899987766533335999999874
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.2e-07 Score=81.01 Aligned_cols=50 Identities=22% Similarity=0.546 Sum_probs=42.6
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
-..|+.|-+... ...++.|+|+||..|+.+-+..++..||.|..++..++
T Consensus 643 ~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 358999998877 44678899999999999999988778999999886553
No 67
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-06 Score=71.21 Aligned_cols=50 Identities=34% Similarity=0.831 Sum_probs=38.2
Q ss_pred CCcccccccccccCC--CceEEecCCCccChhhHHHHHHhCCC-Ccccccccc
Q 028085 149 RETLCSICLEDYREG--ENLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~--~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i 198 (214)
....|+|||+.++.. ..+..+.|||.|..+||+.||-+... .||.|.-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 346899999998644 35666779999999999999963211 699996543
No 68
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.4e-07 Score=72.95 Aligned_cols=51 Identities=25% Similarity=0.562 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+|||+-++.. +.++ |.|-||.+||..-++..+..||.||..+....
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 567899999999843 5666 99999999999999887778999999886554
No 69
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.09 E-value=5.6e-07 Score=78.36 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=42.9
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
...|++||..+.++.....-+|+|.||..|++.|-+..++ ||+||..+..-
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT-CPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT-CPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc-Cchhhhhhhee
Confidence 3579999999887766666679999999999999988777 99999876543
No 70
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.06 E-value=1.1e-06 Score=70.86 Aligned_cols=48 Identities=40% Similarity=0.792 Sum_probs=40.1
Q ss_pred CcccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCC-Cccccccc
Q 028085 150 ETLCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~ 197 (214)
+.-|..|-+.+-..+ .+-.|||.|+||..|+...|+++.. +||.||+-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 457999999986554 6778999999999999999988755 79999943
No 71
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.01 E-value=1.2e-06 Score=52.63 Aligned_cols=47 Identities=32% Similarity=0.642 Sum_probs=23.1
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
..|++|.+-+.. .+....|.|+|++.|+..-+. . .||+|+.+...++
T Consensus 8 LrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~--~-~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG--S-ECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--T-B-SSS--B-S-SS
T ss_pred cCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC--C-CCCCcCChHHHHH
Confidence 479999999872 334556999999999977442 3 4999999886654
No 72
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.92 E-value=5.7e-06 Score=49.44 Aligned_cols=43 Identities=26% Similarity=0.623 Sum_probs=28.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC-Cccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPV 193 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~ 193 (214)
....|+|.+..|+ +.++-..|||+|-++.|.+|+..++. .||.
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4468999999988 45566689999999999999954433 6998
No 73
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4e-06 Score=68.03 Aligned_cols=51 Identities=33% Similarity=0.802 Sum_probs=38.6
Q ss_pred CCcccccccccccCCC----ceEEec-CCCccChhhHHHHHHhCC------CCccccccccc
Q 028085 149 RETLCSICLEDYREGE----NLRVLP-CRHEFHSSCVDSWLIRWG------TFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~----~~~~l~-C~H~FH~~Ci~~Wl~~~~------~~CP~Cr~~i~ 199 (214)
.+..|.||++...+.- ...+|| |.|.||.+|+..|-...+ ..||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 5678999999976442 123456 999999999999995444 26999998654
No 74
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.90 E-value=3.5e-06 Score=68.26 Aligned_cols=47 Identities=38% Similarity=0.946 Sum_probs=38.7
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhC-CCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-GTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-~~~CP~Cr~~i~~ 200 (214)
..|-||-|+-+ .+++=||||..|..|+..|-... ...||.||..|--
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 46999998844 67888999999999999998554 3369999998753
No 75
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.89 E-value=3.5e-06 Score=65.84 Aligned_cols=51 Identities=31% Similarity=0.755 Sum_probs=42.6
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHh----------------------CCCCccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR----------------------WGTFCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~----------------------~~~~CP~Cr~~i~~~ 201 (214)
..|+|||--|.+++....++|-|.||..|+.++|.. ....||+||..|-..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 579999999999999999999999999999888741 012599999987544
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.88 E-value=2.7e-05 Score=59.67 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.5
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEeCCCCC-------------------Ceeeee----------C-------------
Q 028085 2 IRGQCNFSYKIQNAQAAGYDAAIVYALRKKS-------------------PLIYMT----------Y------------- 39 (214)
Q Consensus 2 ~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~-------------------~~~~m~----------~------------- 39 (214)
++|.|.+.+|+++|+++||+|||+|++..+. +.+.++ +
T Consensus 78 r~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~ 157 (220)
T cd02121 78 RYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAE 157 (220)
T ss_pred ECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCc
Confidence 5789999999999999999999999864211 011110 0
Q ss_pred -----C--CCCeeeEEEEchhhHHHHHHHhhcC
Q 028085 40 -----P--EGANVPAFYVTLETGAYLKEHARGE 65 (214)
Q Consensus 40 -----~--~~~~Ip~v~v~~~~g~~L~~~~~~~ 65 (214)
. .--+||++-|+..+++.|++.+.+.
T Consensus 158 r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~ 190 (220)
T cd02121 158 RRDKEESKGLPKIPSLPISYRDAQPLLKALGGP 190 (220)
T ss_pred ccCcccccCCCCCCcccCCHHHHHHHHHHcCCC
Confidence 0 0136999999999999999998754
No 77
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.86 E-value=2.6e-05 Score=55.68 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=43.9
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEeCCCCC--------------------Ceeeee---------C-CCCCeeeEEEEc
Q 028085 2 IRGQCNFSYKIQNAQAAGYDAAIVYALRKKS--------------------PLIYMT---------Y-PEGANVPAFYVT 51 (214)
Q Consensus 2 ~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~--------------------~~~~m~---------~-~~~~~Ip~v~v~ 51 (214)
+.|.-.+..|+++||++||.|||||.|..+. ++.+.. . ..--+||+.-|+
T Consensus 47 RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS 126 (153)
T cd02131 47 KLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPIS 126 (153)
T ss_pred eccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccC
Confidence 4477889999999999999999999874211 111110 0 011369999999
Q ss_pred hhhHHHHHHHhh
Q 028085 52 LETGAYLKEHAR 63 (214)
Q Consensus 52 ~~~g~~L~~~~~ 63 (214)
..+.+.|++.-.
T Consensus 127 ~~dA~~lL~~~~ 138 (153)
T cd02131 127 AYLAKKLLSAPP 138 (153)
T ss_pred HHHHHHHHhCCc
Confidence 999999887553
No 78
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.8e-06 Score=67.72 Aligned_cols=49 Identities=33% Similarity=0.632 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+.+|.||+..+. .+..+||||.||..||++-+.... .||.||..+...
T Consensus 83 sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~-~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 83 SEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQET-ECPLCRDELVEL 131 (398)
T ss_pred chhhhhhhHhhcC---CCccccccccccHHHHHHHhccCC-CCcccccccccc
Confidence 6689999999998 558889999999999999776544 499999998753
No 79
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.65 E-value=1.3e-05 Score=67.26 Aligned_cols=62 Identities=21% Similarity=0.548 Sum_probs=49.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC----CCCccccccccccccCCCCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW----GTFCPVCRHEIRRSTSNEGNEQVHVS 213 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~----~~~CP~Cr~~i~~~~~~~~~~~~~~~ 213 (214)
++.+|-+|-+.-+ ......|+|.||+-|+..++... +.+||.|...+.-....|..+...+.
T Consensus 535 ~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~ 600 (791)
T KOG1002|consen 535 GEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLK 600 (791)
T ss_pred CceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchh
Confidence 5678999999876 55788999999999998887543 44899999998888777777665554
No 80
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.1e-05 Score=57.05 Aligned_cols=54 Identities=28% Similarity=0.609 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC-------CCCccccccccccccC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-------GTFCPVCRHEIRRSTS 203 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-------~~~CP~Cr~~i~~~~~ 203 (214)
....|..|-..+..+|.+ .|-|-|+||++|++.|-..- ...||-|..+|..+.+
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 445799999999999764 68899999999999998642 1169999999876643
No 81
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00017 Score=55.96 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC-CCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG-TFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~ 199 (214)
++.+|++|-+.-..+ ....+|||+||..|+..=..... .+||.|..+..
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 567999999885533 35677999999999988665432 26999987764
No 82
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.59 E-value=4.5e-05 Score=70.85 Aligned_cols=53 Identities=26% Similarity=0.602 Sum_probs=43.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC--------C-Cccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG--------T-FCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~--------~-~CP~Cr~~i~~~ 201 (214)
.++.|.||+.+--.......|.|+|+||-+|....|+++= . .||+|+.+|...
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 6788999998877777889999999999999998887641 1 699999887543
No 83
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=2.1e-05 Score=56.06 Aligned_cols=30 Identities=37% Similarity=0.822 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChh
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSS 178 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~ 178 (214)
+..+|.||||+++.+|++..|||--+||+.
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 446899999999999999999999999973
No 84
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.56 E-value=8.6e-05 Score=53.08 Aligned_cols=50 Identities=20% Similarity=0.586 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCceEEecC--CC---ccChhhHHHHHHhCCC-Ccccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPC--RH---EFHSSCVDSWLIRWGT-FCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C--~H---~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~~ 202 (214)
.+..|-||.++.. +. .-|| .. .-|.+|++.|+...+. .|++|+.+..-..
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 5578999998843 22 2464 44 4599999999987654 7999999876553
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.46 E-value=7e-05 Score=42.91 Aligned_cols=41 Identities=39% Similarity=0.950 Sum_probs=28.0
Q ss_pred cccccccccCCCceEEecC---C--CccChhhHHHHHHhCCC-Ccccc
Q 028085 153 CSICLEDYREGENLRVLPC---R--HEFHSSCVDSWLIRWGT-FCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C---~--H~FH~~Ci~~Wl~~~~~-~CP~C 194 (214)
|-||++.-.+++ ....|| | -.-|.+|+.+|+..+.. .|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877665 556786 2 35899999999987543 69987
No 86
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.44 E-value=5e-05 Score=52.92 Aligned_cols=35 Identities=17% Similarity=0.527 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEEecCC------CccChhhHHHHH
Q 028085 150 ETLCSICLEDYREGENLRVLPCR------HEFHSSCVDSWL 184 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~------H~FH~~Ci~~Wl 184 (214)
..+|.||++.+.+++-+..++|| |.||.+|+++|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 56899999999985567777774 899999999994
No 87
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.43 E-value=7e-05 Score=62.64 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCceEE-ecCCCccChhhHHHHHHhCCCCccccccccccccCCC
Q 028085 149 RETLCSICLEDYREGENLRV-LPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNE 205 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~-l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~ 205 (214)
.+..|++|...+.+. .. +.|||.||..|+..|+..+. .||.|+..+......+
T Consensus 20 ~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELP 73 (391)
T ss_pred ccccCccccccccCC---CCCCCCCCcccccccchhhccCc-CCcccccccchhhccC
Confidence 557899999999855 34 58999999999999998844 5999999887666554
No 88
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.36 E-value=0.00066 Score=49.01 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEeCCCCCC--eeeeeCCCCCeeeEEEEchhhHHHHHHH
Q 028085 6 CNFSYKIQNAQAAGYDAAIVYALRKKSP--LIYMTYPEGANVPAFYVTLETGAYLKEH 61 (214)
Q Consensus 6 C~f~~K~~~a~~~ga~aviv~~~~~~~~--~~~m~~~~~~~Ip~v~v~~~~g~~L~~~ 61 (214)
|+|..|+++|+++||.|||+||+..... .-.+.. .+. -.+++++...-..+...
T Consensus 76 ~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 76 AGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPR-FGG-TAPQRVDIAAADPWFTA 131 (151)
T ss_pred cCHHHHHHHHHHCCCeEEEEEeCCcccCcccccccc-cCc-cceEEechHHHHHHhhh
Confidence 9999999999999999999999765421 111110 011 11777888877777664
No 89
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00011 Score=60.17 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC-------CCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG-------TFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~-------~~CP~Cr~~ 197 (214)
.-..|-||+++....+....|||+|+||+.|+..+....- -.||-+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3468999999998878999999999999999999987531 158776553
No 90
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.32 E-value=0.00025 Score=50.57 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCCCCe--eeeeCCCCCeee-EEEEchhhHHHHHHHh
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALRKKSPL--IYMTYPEGANVP-AFYVTLETGAYLKEHA 62 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~~~~~~--~~m~~~~~~~Ip-~v~v~~~~g~~L~~~~ 62 (214)
+|..|+++|+++||.|||++|+.+.... -.+.+...-.++ ...|+...+.+|.+..
T Consensus 77 ~~~~K~~~A~~~GA~gvIii~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~a~~l~~~a 135 (142)
T cd04814 77 RWTYKYEEAARHGAAGVLIVHELAPASYGWATWKNPAKVHPNLEAAIQRAVAVDLFEAS 135 (142)
T ss_pred CHHHHHHHHHHCCCcEEEEEeCCCcccCChhhhhcccccCCceeeEecHHHHHHHHhhC
Confidence 6999999999999999999997653222 111111111222 3347777777766544
No 91
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00016 Score=57.97 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
+++.|+||...-. .....||+|-=|+.||.+-+++.+. |=.|+..+.
T Consensus 421 Ed~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVI 467 (489)
T ss_pred ccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCe-eeEecceee
Confidence 6678999998755 4478999999999999999999777 999999876
No 92
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00019 Score=57.83 Aligned_cols=45 Identities=33% Similarity=0.736 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..+.|.||+++..+ ...+||||+-+ |..--. +...||+||+.|..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHHHh--hCCCCchhHHHHHH
Confidence 55689999999884 58999999855 554432 23349999998753
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.24 E-value=0.00013 Score=49.72 Aligned_cols=32 Identities=34% Similarity=0.756 Sum_probs=27.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHH
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVD 181 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~ 181 (214)
.+..|++|-..+..+ .....||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 345799999999874 78888999999999975
No 94
>PHA02862 5L protein; Provisional
Probab=97.23 E-value=0.00019 Score=50.29 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=35.3
Q ss_pred cccccccccccCCCceEEecCC-----CccChhhHHHHHHhCCC-Cccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCR-----HEFHSSCVDSWLIRWGT-FCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~-----H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~ 201 (214)
+.|-||.++-. +. .-||+ ..-|.+|+.+|+...+. .||+|+.+...+
T Consensus 3 diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 57999999853 33 35652 35899999999977644 799999987544
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.21 E-value=0.00014 Score=57.07 Aligned_cols=52 Identities=27% Similarity=0.568 Sum_probs=39.8
Q ss_pred cccccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCcccc-ccccccccCCC
Q 028085 151 TLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVC-RHEIRRSTSNE 205 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~C-r~~i~~~~~~~ 205 (214)
..|+.|..-+. ....+| |+|.||++||..-|......||.| |+++......|
T Consensus 275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~p 328 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTP 328 (427)
T ss_pred ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCc
Confidence 58999998888 446777 899999999998887766679999 44554443333
No 96
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.15 E-value=0.00053 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCC
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALRKK 31 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~~~ 31 (214)
++.+|+++|+++||.|||+|++...
T Consensus 73 ~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 73 SSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred cHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3889999999999999999997654
No 97
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.13 E-value=0.00026 Score=40.36 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=21.9
Q ss_pred cccccccccCCCceEEec--CCCccChhhHHHHHHhCCCCcccccccc
Q 028085 153 CSICLEDYREGENLRVLP--CRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
|++|.+++...+ ...+| ||+-.+..|...-+......||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984443 23555 7999999998887764344699999874
No 98
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.10 E-value=0.00014 Score=53.61 Aligned_cols=44 Identities=34% Similarity=0.656 Sum_probs=36.8
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
..|.||-.+|+ .++.+.|||.||..|...=++.... |-+|....
T Consensus 197 F~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~-C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDE-CGVCGKAT 240 (259)
T ss_pred eeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCc-ceecchhh
Confidence 58999999999 5589999999999999887766444 99996643
No 99
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00012 Score=57.26 Aligned_cols=42 Identities=33% Similarity=0.769 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
+..|+||++.-. ....|+|||. -|.+|-... + .||+||+-+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~-eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----N-ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----c-cCchHHHHHH
Confidence 568999999977 5689999995 788886541 2 4999998764
No 100
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.0003 Score=53.85 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=34.4
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.|--|.-.-. +++.+.+.|+|+||..|...-. ...||+||.++....
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC---ccccccccceeeeee
Confidence 4666655433 7788999999999999986532 214999999875443
No 101
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00033 Score=56.55 Aligned_cols=48 Identities=35% Similarity=0.740 Sum_probs=40.6
Q ss_pred cccccccccccCCC---ceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 151 TLCSICLEDYREGE---NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~---~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
.+|-||-++|..++ .++.|.|||.|+..|+...+......||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998774 5688889999999999887766555799999984
No 102
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=2.4e-05 Score=63.34 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=44.9
Q ss_pred cccccccccccCC-CceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 151 TLCSICLEDYREG-ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 151 ~~C~ICl~~~~~~-~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
..|+||.+.+... +.+..+-|||.+|..|+.+||..... ||.|++.+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~k-l~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRK-LPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH-hHHHHhhhhhhh
Confidence 4799999999877 77888899999999999999999665 999999987654
No 103
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.90 E-value=0.00019 Score=57.20 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=40.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|.+|-..|.+.. .+..|=|.||+.||-..+...+. ||.|...+-..
T Consensus 14 ~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~-CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKY-CPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhcc-CCccceeccCc
Confidence 3468999999998663 34569999999999999999665 99998877543
No 104
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0017 Score=51.85 Aligned_cols=45 Identities=27% Similarity=0.661 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
....|++|+....++ ..+. -|-+||+.|+-.++.+.+. ||+=..+
T Consensus 299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGH-CPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCC-CCccCCc
Confidence 556899999997755 3444 5999999999999998776 9975444
No 105
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.87 E-value=0.00055 Score=60.84 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=37.9
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCC------CCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWG------TFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~------~~CP~Cr~~ 197 (214)
...+|.||.+.+...+.+--- .|-|+||..||..|-.... ..||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 457999999999877654333 3899999999999987532 179999853
No 106
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0013 Score=50.31 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=44.5
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
....|++|.+.+.+.-....| ||||+|+.+|++..+..... ||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v-~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMV-DPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccccc-ccCCCCcCcccc
Confidence 446899999999988777777 59999999999999887776 999988876543
No 107
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0004 Score=54.51 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=37.9
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|-||-..|.. .+.+.|+|.||..|...=++.... |++|.+...
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~-c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEK-CYVCSQQTH 286 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhccccccCCc-ceecccccc
Confidence 569999999994 489999999999999888866555 999977653
No 108
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.76 E-value=0.00063 Score=39.70 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=33.2
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
..|..|...-. +-..+||||+.+..|.+.+- -+. ||.|..++...
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~r--Yng-CPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGER--YNG-CPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccChhh--ccC-CCCCCCcccCC
Confidence 45666665544 44789999999999998753 355 99998887544
No 109
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.58 E-value=0.0024 Score=51.33 Aligned_cols=45 Identities=27% Similarity=0.565 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHH--HhCCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWL--IRWGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl--~~~~~~CP~Cr~~ 197 (214)
+...|.||-+... -...+||+|-.|.-|--..- -..+ .||+||..
T Consensus 60 en~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K-~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQK-GCPLCRTE 106 (493)
T ss_pred ccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhcc-CCCccccc
Confidence 4567999999987 66899999999888865432 2224 49999974
No 110
>PHA03096 p28-like protein; Provisional
Probab=96.58 E-value=0.001 Score=53.05 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=33.4
Q ss_pred cccccccccccCC----CceEEec-CCCccChhhHHHHHHhCCC--Ccccccc
Q 028085 151 TLCSICLEDYREG----ENLRVLP-CRHEFHSSCVDSWLIRWGT--FCPVCRH 196 (214)
Q Consensus 151 ~~C~ICl~~~~~~----~~~~~l~-C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~ 196 (214)
..|.||++..... ..--.|+ |.|.|+..|+..|...... +||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999986643 1334566 9999999999999976532 4555544
No 111
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.10 E-value=0.0018 Score=57.64 Aligned_cols=48 Identities=23% Similarity=0.681 Sum_probs=39.5
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCC-Ccccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRHEIRRST 202 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~~ 202 (214)
..|.+|++ .+....++|+|.||.+|+..-+..... .||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 347789999999999999998876544 4999999876554
No 112
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.05 E-value=0.0076 Score=47.78 Aligned_cols=51 Identities=18% Similarity=0.480 Sum_probs=39.6
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|||...+|........| ||||+|.+.+++..- ... .||+|-.++...
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~-~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSK-KCPVCGKPFTEE 163 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccc-cccccCCccccC
Confidence 667999999999665555444 799999999999962 223 499999887644
No 113
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0075 Score=49.52 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC--CCcccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG--TFCPVC 194 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~--~~CP~C 194 (214)
+-..|||=-+.-.++..+..|.|||+..++=+.+..+... ..||+|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4468999888888888999999999999999999877665 379999
No 114
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.0041 Score=49.09 Aligned_cols=46 Identities=33% Similarity=0.629 Sum_probs=38.2
Q ss_pred CcccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 150 ETLCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
+..|+||.+.+.... .+..++|||.-|..|+......+ -+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 345999999877664 56788999999999999988776 56999977
No 115
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.0041 Score=55.55 Aligned_cols=42 Identities=26% Similarity=0.665 Sum_probs=31.9
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
..|..|-..+.-+ .+...|||.||.+|+. .. ...||-|+-.+
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~-~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DK-EDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cC-cccCCccchhh
Confidence 5899998887743 3566799999999998 23 33599998743
No 116
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.005 Score=55.36 Aligned_cols=36 Identities=25% Similarity=0.570 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHH
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLI 185 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~ 185 (214)
.++.|.+|.-.+... .-..-||||.||++|+.+-..
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 456899999988766 667889999999999987664
No 117
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.67 E-value=0.016 Score=33.86 Aligned_cols=43 Identities=26% Similarity=0.798 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCccc--cccc
Q 028085 150 ETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPV--CRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~--Cr~~ 197 (214)
...|++|-+.|.++|.+.+-| ||-.+|++|.+. ... |-. |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~-C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGG-CINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCc-eEeccCCCC
Confidence 357999999999888888888 999999999643 343 655 5443
No 118
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0095 Score=43.44 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=33.9
Q ss_pred ccccccccccCC----CceEEecCCCccChhhHHHHHHhC----CC------Ccccccccccccc
Q 028085 152 LCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRW----GT------FCPVCRHEIRRST 202 (214)
Q Consensus 152 ~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~----~~------~CP~Cr~~i~~~~ 202 (214)
.|.||+..--+| +..--..||.-||.-|+..||+.- ++ .||.|-.++.-+.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 466666443333 122334699999999999999642 11 5999988886543
No 119
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.0052 Score=48.71 Aligned_cols=30 Identities=33% Similarity=0.894 Sum_probs=22.5
Q ss_pred EEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 167 RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 167 ~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
|..||+|+||.+|... ...+ .||.|-..+.
T Consensus 105 RmIPCkHvFCl~CAr~--~~dK-~Cp~C~d~Vq 134 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS--DSDK-ICPLCDDRVQ 134 (389)
T ss_pred cccccchhhhhhhhhc--Cccc-cCcCcccHHH
Confidence 7889999999999754 2223 4999966553
No 120
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.38 E-value=0.011 Score=47.54 Aligned_cols=53 Identities=21% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCcccccccccccCCCce-EEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENL-RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~-~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+++-|+.|++++...|+- .-.|||-..|.-|...--+.-+-.||-||+.....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 445699999998877643 34568987777776554433333699999976543
No 121
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.10 E-value=0.0072 Score=33.82 Aligned_cols=42 Identities=24% Similarity=0.654 Sum_probs=22.8
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCC-Ccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPVC 194 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~C 194 (214)
|.+|-+-...|..-..-.|+=.+|..|++.++..++. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5677777666632111238888999999999987664 49987
No 122
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.0083 Score=45.75 Aligned_cols=41 Identities=39% Similarity=0.840 Sum_probs=30.6
Q ss_pred cccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
|-.|-+.-. .+..+||.|. +|..|-.. + + .||+|+......
T Consensus 161 Cr~C~~~~~---~VlllPCrHl~lC~~C~~~-~---~-~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGEREA---TVLLLPCRHLCLCGICDES-L---R-ICPICRSPKTSS 202 (207)
T ss_pred ceecCcCCc---eEEeecccceEeccccccc-C---c-cCCCCcChhhce
Confidence 777777644 7899999885 99999754 2 3 399999876543
No 123
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.90 E-value=0.014 Score=46.94 Aligned_cols=42 Identities=29% Similarity=0.596 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEecC--CCccChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPC--RHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C--~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
-.+|+||.+.+... ...| ||+-|..|-.+ ..+ .||.||-++.
T Consensus 48 lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~-~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSN-KCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCccc----ceecCCCcEehhhhhhh---hcc-cCCccccccc
Confidence 35899999999865 5667 89999999764 223 4999999886
No 124
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.70 E-value=0.017 Score=51.22 Aligned_cols=40 Identities=33% Similarity=0.663 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPV 193 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~ 193 (214)
.|+||--... +.......|+|+-|.+|...|+..+.. ||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~-Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDV-CPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCc-CCC
Confidence 3444443333 224456679999999999999999876 985
No 125
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.011 Score=51.34 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=33.0
Q ss_pred cccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCCCccccccc
Q 028085 151 TLCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 151 ~~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
..|.||+..|.... ..+.|-|||..|..|+..-. +.+ || |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~s-cp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NAS-CP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hcc-CC-CCcc
Confidence 46999998887653 55677799999999998754 345 99 7654
No 126
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.059 Score=42.55 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=36.7
Q ss_pred cccccccc-ccCCC-ceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 152 LCSICLED-YREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 152 ~C~ICl~~-~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.|+.|-.+ |...+ .+..-+|+|-.|.+|++..+..+...||-|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 58999876 33443 233337999999999999998877689999776543
No 127
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.35 E-value=0.026 Score=52.90 Aligned_cols=46 Identities=30% Similarity=0.743 Sum_probs=37.5
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
...|.||++.....- .+..|||.++..|...|+..+.. ||+|+...
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~-~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSR-CPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhcc-Ccchhhhh
Confidence 348999999988321 56779999999999999988666 99998543
No 128
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.036 Score=42.89 Aligned_cols=51 Identities=29% Similarity=0.632 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCce-EEecC-----CCccChhhHHHHHHhCC-------CCccccccccc
Q 028085 149 RETLCSICLEDYREGENL-RVLPC-----RHEFHSSCVDSWLIRWG-------TFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~-~~l~C-----~H~FH~~Ci~~Wl~~~~-------~~CP~Cr~~i~ 199 (214)
.+..|-||+..-+++-.- -+-|| .|=-|..|+..|+..++ ..||-|+....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 667899999886655221 23465 36689999999997653 27999988653
No 129
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.046 Score=45.79 Aligned_cols=38 Identities=29% Similarity=0.620 Sum_probs=29.0
Q ss_pred CcccccccccccCC-CceEEecCCCccChhhHHHHHHhC
Q 028085 150 ETLCSICLEDYREG-ENLRVLPCRHEFHSSCVDSWLIRW 187 (214)
Q Consensus 150 ~~~C~ICl~~~~~~-~~~~~l~C~H~FH~~Ci~~Wl~~~ 187 (214)
..+|.||..+.... +......|+|.||.+|..+.+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 45899999555444 444456799999999999998754
No 130
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.46 E-value=0.18 Score=36.32 Aligned_cols=33 Identities=30% Similarity=0.713 Sum_probs=21.8
Q ss_pred CcccccccccccCCCceEEec------------CCCc-cChhhHHHHHH
Q 028085 150 ETLCSICLEDYREGENLRVLP------------CRHE-FHSSCVDSWLI 185 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~------------C~H~-FH~~Ci~~Wl~ 185 (214)
+..|+||||---+. +.|- |+.. =|..|+++.-+
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 45799999874422 3443 4333 47899999865
No 131
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.97 E-value=0.13 Score=35.85 Aligned_cols=50 Identities=30% Similarity=0.634 Sum_probs=38.0
Q ss_pred CcccccccccccCCCceEEe-c---CCCccChhhHHHHHHhCCC--Ccccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVL-P---CRHEFHSSCVDSWLIRWGT--FCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~---C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~~i~~~~ 202 (214)
-.+|.||-|...+. +.| | ||-..|--|....++.-+. .||.|+.+.-...
T Consensus 80 lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 36899999997755 455 3 8998999888887766543 6999999876544
No 132
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.51 E-value=0.14 Score=40.94 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC--Ccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT--FCPVC 194 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~--~CP~C 194 (214)
+-..||+=-+.-.+...+..|.|||+.-++-++..-++... .||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 34689998888888889999999999999999986655422 69999
No 133
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=0.098 Score=41.36 Aligned_cols=31 Identities=29% Similarity=0.661 Sum_probs=23.5
Q ss_pred CCCccChhhHHHHHHhCC------------CCccccccccccc
Q 028085 171 CRHEFHSSCVDSWLIRWG------------TFCPVCRHEIRRS 201 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~~~~------------~~CP~Cr~~i~~~ 201 (214)
|+..+|.+|+.+|+..++ -.||+||+...-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 577788999999986432 2699999987543
No 134
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.31 E-value=0.091 Score=43.86 Aligned_cols=35 Identities=31% Similarity=0.771 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHh
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR 186 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~ 186 (214)
++..|+||..-|+ ++.+|||+|..|.-|...-+..
T Consensus 3 eelkc~vc~~f~~---epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYR---EPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhcc---CceEeecccHHHHHHHHhhccc
Confidence 4578999999999 5589999999999999876643
No 135
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.27 E-value=0.15 Score=42.15 Aligned_cols=30 Identities=27% Similarity=0.747 Sum_probs=22.9
Q ss_pred CCCccChhhHHHHHHhCC------------CCcccccccccc
Q 028085 171 CRHEFHSSCVDSWLIRWG------------TFCPVCRHEIRR 200 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~~~~------------~~CP~Cr~~i~~ 200 (214)
|+-.+|.+|+-+|+..++ ..||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 466678899999997543 269999998653
No 136
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.24 E-value=0.1 Score=42.48 Aligned_cols=52 Identities=29% Similarity=0.731 Sum_probs=37.4
Q ss_pred CcccccccccccCCCc-eEEecCC-----CccChhhHHHHHHhCCC-Cccccccccccc
Q 028085 150 ETLCSICLEDYREGEN-LRVLPCR-----HEFHSSCVDSWLIRWGT-FCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~-~~~l~C~-----H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~ 201 (214)
+..|-||.++...... ....||. +..|..|++.|+..... .|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 3679999998664422 4567762 45799999999985544 699998865443
No 137
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=90.96 E-value=0.069 Score=46.65 Aligned_cols=42 Identities=24% Similarity=0.721 Sum_probs=27.1
Q ss_pred Cccccccccc-----ccCCCceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 150 ETLCSICLED-----YREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 150 ~~~C~ICl~~-----~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
...|.+|-.. |+.....+...|+++||+.|+.. .+..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchH
Confidence 3567777322 44333445566999999999754 233499993
No 138
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=0.17 Score=44.59 Aligned_cols=47 Identities=28% Similarity=0.869 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
..+.|.+|+++. ..+..+|. |..|+..|+..+.. ||+|+..+..+..
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~-~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEV-CPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccc-cCCCchhhhcccc
Confidence 556899999998 44788888 89999999988776 9999887765543
No 139
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.77 E-value=0.21 Score=45.05 Aligned_cols=52 Identities=27% Similarity=0.633 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCceEEecC---CC--ccChhhHHHHHHhCCC-Cccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPC---RH--EFHSSCVDSWLIRWGT-FCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C---~H--~FH~~Ci~~Wl~~~~~-~CP~Cr~~i~~~ 201 (214)
++..|-||..+=..++++ .-|| |- -.|.+|+.+|+..... .|-+|+.++.-+
T Consensus 11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 557899999887766544 4565 33 3899999999987654 699999877544
No 140
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=90.43 E-value=0.2 Score=28.98 Aligned_cols=42 Identities=26% Similarity=0.675 Sum_probs=21.5
Q ss_pred cccccccccCCC------ceEEec-CCCccChhhHHHHHHhCCCCccccc
Q 028085 153 CSICLEDYREGE------NLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 153 C~ICl~~~~~~~------~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
|.-|+..|..+. ....-| |++.|+.+| |..+-..-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556677766542 334445 999999999 455433333699884
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=89.73 E-value=0.22 Score=37.97 Aligned_cols=42 Identities=31% Similarity=0.826 Sum_probs=28.6
Q ss_pred CCccccccccc-----ccCCCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 149 RETLCSICLED-----YREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~-----~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
....|-+|-++ |..+...+--.|+-+||+.|.. ++. ||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~-CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKS-CPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCC-CCCcHh
Confidence 34578888754 4443344444599999999986 244 999954
No 142
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.68 E-value=0.15 Score=39.23 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=37.2
Q ss_pred CCcccccccccc-cCCC-ceEEec-CCCccChhhHHHHHHhCCCCcc--cccccc
Q 028085 149 RETLCSICLEDY-REGE-NLRVLP-CRHEFHSSCVDSWLIRWGTFCP--VCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~-~~~~-~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP--~Cr~~i 198 (214)
.+..||+|-.+. -..| .+.+-| |-|-.|.+|+++-+......|| -|..-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 445899999773 3443 334446 9999999999999987766799 786544
No 143
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=89.46 E-value=2.3 Score=28.89 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=32.0
Q ss_pred EEEEEeC-CCCCCeeeeeCCCCCeeeEEEEchh-hHHHHHHHhh
Q 028085 22 AAIVYAL-RKKSPLIYMTYPEGANVPAFYVTLE-TGAYLKEHAR 63 (214)
Q Consensus 22 aviv~~~-~~~~~~~~m~~~~~~~Ip~v~v~~~-~g~~L~~~~~ 63 (214)
+-+|||. .+.+...+|.+..+...|++|+++. .|+++.+.+.
T Consensus 45 ~g~iydvivepp~igs~~d~~g~~rpv~fla~rvngqyimegla 88 (147)
T KOG3356|consen 45 GGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYIMEGLA 88 (147)
T ss_pred ccEEEEEEecCCCCCcccccCCcCcceEEEeccccceeeehhhc
Confidence 4567885 3434678888888889999999887 6888887665
No 144
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.28 E-value=0.1 Score=29.39 Aligned_cols=33 Identities=24% Similarity=0.640 Sum_probs=21.3
Q ss_pred EecC-CCccChhhHHHHHHhCCCCccccccccccc
Q 028085 168 VLPC-RHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 168 ~l~C-~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
...| .|..|-.|+...+.... .||+|..+++++
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~-~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD-RCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS-EETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhcccc-CCCcccCcCccc
Confidence 5568 59999999999886644 599999998754
No 145
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.19 E-value=0.074 Score=47.13 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC--Ccccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT--FCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~~i~~~~ 202 (214)
...+|+||+..+... ..+.|-|.|+..|+..-+...+. .||+|++.+....
T Consensus 20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 346899999999955 67889999999998876665442 5999998765443
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.12 E-value=0.37 Score=43.13 Aligned_cols=39 Identities=28% Similarity=0.609 Sum_probs=30.0
Q ss_pred cccccccccccCCCceEEec--CCCccChhhHHHHHHhCCCCccc
Q 028085 151 TLCSICLEDYREGENLRVLP--CRHEFHSSCVDSWLIRWGTFCPV 193 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~~CP~ 193 (214)
-.|.+|-..+. .+...+ |||.-|.+|+.+|+..... ||.
T Consensus 780 ~~CtVC~~vi~---G~~~~c~~C~H~gH~sh~~sw~~~~s~-ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR---GVDVWCQVCGHGGHDSHLKSWFFKASP-CAK 820 (839)
T ss_pred cCceeecceee---eeEeecccccccccHHHHHHHHhcCCC-Ccc
Confidence 36888877766 223333 9999999999999988766 876
No 147
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.49 E-value=0.19 Score=29.00 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=20.6
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCC----CCccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG----TFCPVCRHE 197 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~----~~CP~Cr~~ 197 (214)
..|++....+.. .+|...|.|.-+ --++.|+..+. -.||+|+++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 358888777662 456666999743 23445665432 269999764
No 148
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=88.43 E-value=0.42 Score=38.52 Aligned_cols=68 Identities=22% Similarity=0.476 Sum_probs=42.1
Q ss_pred HHHHhcCCceeeeccccccCCCCCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 127 RSTVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
+..---.|-..|.+....... .+..|-.|.++.......+.-.|.|.||.+| +..+-..-..||-|..
T Consensus 308 RSyhhL~PL~~F~Eip~~~~~-~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldC-Dv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 308 RSYHHLFPLKPFVEIPETEYN-GSRFCFACQGELLSSGRYRCESCKNVFCLDC-DVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHhhcCCcchhhccccccC-CCcceeeeccccCCCCcEEchhccceeeccc-hHHHHhhhhcCCCcCC
Confidence 333333444444443333222 3345999988877776666666999999999 4555443336999964
No 149
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=0.26 Score=44.30 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=33.3
Q ss_pred Cccccccccccc-CC---CceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 150 ETLCSICLEDYR-EG---ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 150 ~~~C~ICl~~~~-~~---~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
+..|.-|.+..- .+ +.+..+.|||.||+.|+..-..+++ |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChhh
Confidence 347999987754 22 5788999999999999998887654 65553
No 151
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.10 E-value=0.57 Score=42.25 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCcccccccccccCC-CceEEec---CCCccChhhHHHHHHhCC-----CCcccccccc
Q 028085 149 RETLCSICLEDYREG-ENLRVLP---CRHEFHSSCVDSWLIRWG-----TFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~-~~~~~l~---C~H~FH~~Ci~~Wl~~~~-----~~CP~Cr~~i 198 (214)
..+.|.+|.-++.++ |..-.+| |+|-||..||..|...-. ..|++|..-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 335677777776652 3344556 999999999999997531 2589998755
No 152
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=85.78 E-value=1.1 Score=32.57 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCC
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
.+..|.+.|+++||.|+|+.++.
T Consensus 80 ~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 80 RWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cHHHHHHHHHHCCCeEEEEEeCC
Confidence 35679999999999999999654
No 153
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=85.54 E-value=0.084 Score=30.43 Aligned_cols=44 Identities=25% Similarity=0.649 Sum_probs=28.6
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhC-----CCCcccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-----GTFCPVCRH 196 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-----~~~CP~Cr~ 196 (214)
|.||...-..++.+.--.|+..||..|+..=.... .-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 88898854444333333489999999987654311 226988863
No 154
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.21 E-value=0.76 Score=35.76 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCcccccccccccCCCceEE-ecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRV-LPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~-l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
....|+|---++.....-.. .+|||+|-..-+.+.- .+.|++|.+.+...+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 45689987777665544433 4699999999988742 335999999876554
No 155
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=82.48 E-value=0.64 Score=24.78 Aligned_cols=25 Identities=28% Similarity=0.703 Sum_probs=15.6
Q ss_pred ccccccccccCCCc--------eEEecCCCccC
Q 028085 152 LCSICLEDYREGEN--------LRVLPCRHEFH 176 (214)
Q Consensus 152 ~C~ICl~~~~~~~~--------~~~l~C~H~FH 176 (214)
+|+=|...|..+|+ ++-..|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57788877765542 33334778774
No 156
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=82.26 E-value=0.86 Score=27.66 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=9.4
Q ss_pred ccChhhHHHHHHh
Q 028085 174 EFHSSCVDSWLIR 186 (214)
Q Consensus 174 ~FH~~Ci~~Wl~~ 186 (214)
-||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 157
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=82.22 E-value=0.67 Score=22.77 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=11.1
Q ss_pred ccccccccccCCCceEEec-CCCcc
Q 028085 152 LCSICLEDYREGENLRVLP-CRHEF 175 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~-C~H~F 175 (214)
.|+-|-...... .+.-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 356665554422 23444 66665
No 158
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=82.06 E-value=1.3 Score=23.32 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=24.1
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
|+.|-..+..++. ....=+..||.+|+ .|..|+.++
T Consensus 2 C~~C~~~i~~~~~-~~~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGEL-VLRALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcE-EEEeCCccccccCC---------CCcccCCcC
Confidence 7788888776532 23334778998885 277777665
No 159
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=0.76 Score=39.44 Aligned_cols=37 Identities=30% Similarity=0.651 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW 187 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~ 187 (214)
...+|-||.+.+.. .+..+.|||.|+..|....+.++
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 55789999999885 56778899999999999988764
No 160
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=78.89 E-value=0.63 Score=38.63 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCccccccccccc-----------CCCceEEecCCCccChhhHHHHHHhC-----CCCccccccc
Q 028085 149 RETLCSICLEDYR-----------EGENLRVLPCRHEFHSSCVDSWLIRW-----GTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~-----------~~~~~~~l~C~H~FH~~Ci~~Wl~~~-----~~~CP~Cr~~ 197 (214)
...+|++=|..+. +.+...-|.|||++... .|-..+ ...||+||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4468888775532 22344567899985432 564322 2269999873
No 161
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=78.45 E-value=2.5 Score=34.14 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=35.7
Q ss_pred CCcccccccccc--------------cCCC--ceEEecCCCccChhhHHHHHHhCC--------CCcccccccccc
Q 028085 149 RETLCSICLEDY--------------REGE--NLRVLPCRHEFHSSCVDSWLIRWG--------TFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~--------------~~~~--~~~~l~C~H~FH~~Ci~~Wl~~~~--------~~CP~Cr~~i~~ 200 (214)
.+.+|++|+..= .+.- .-..-||||+--++=..=|-+..- ..||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 467999999651 1111 224568999999999988986531 159999776643
No 162
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.19 E-value=3.6 Score=28.07 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=29.7
Q ss_pred cccccccccccCCC-----------ceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 151 TLCSICLEDYREGE-----------NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 151 ~~C~ICl~~~~~~~-----------~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
..|--|...|.+.. ..+--.|++.|+.+|=.=+-+.=+ .||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh-~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH-CCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc-CCcCCC
Confidence 46999999886431 122344999999999544444334 499995
No 163
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=77.70 E-value=0.96 Score=36.41 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=27.8
Q ss_pred CCccccccccccc-----------CCCceEEecCCCc--cChhhHHHHHHhCC-----CCcccccc
Q 028085 149 RETLCSICLEDYR-----------EGENLRVLPCRHE--FHSSCVDSWLIRWG-----TFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~-----------~~~~~~~l~C~H~--FH~~Ci~~Wl~~~~-----~~CP~Cr~ 196 (214)
...+|++=|..+. ..+...-|.|||+ +| .|=.+.+ ..||+||.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeee
Confidence 4468998886643 2345567889997 66 4543322 25999986
No 164
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.69 E-value=1.1 Score=37.60 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=29.8
Q ss_pred cccccccccccCCCce--EEecCCCccChhhHHHHHHhCCCCcccc
Q 028085 151 TLCSICLEDYREGENL--RVLPCRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~--~~l~C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
..|+.|...++..+-- ..-.|||-|++.|.-.|...+.. |..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~-~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGE-CYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCcc-ccCc
Confidence 4688888776544322 22239999999999999877554 6544
No 165
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.41 E-value=6 Score=27.52 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028085 83 EKIIVWGMLLLFVISIPLLFWFARKLYP 110 (214)
Q Consensus 83 ~~i~~~~~l~~~i~~~~~~~~~~~~~~~ 110 (214)
..|+|.++..+ +..+++++|+++|.+.
T Consensus 67 ~~Ii~gv~aGv-Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGV-IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 44555555443 3344455566665443
No 166
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=77.01 E-value=1.5 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=15.6
Q ss_pred cccccccccccCCCc--------eEEecCCCccC
Q 028085 151 TLCSICLEDYREGEN--------LRVLPCRHEFH 176 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~--------~~~l~C~H~FH 176 (214)
.+|+-|-..|..+++ ++--.|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888877765542 23333777774
No 167
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=75.38 E-value=2 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.809 Sum_probs=11.2
Q ss_pred CccccccccccccCCCCC
Q 028085 190 FCPVCRHEIRRSTSNEGN 207 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~~~~~ 207 (214)
.||+|+..+......+++
T Consensus 4 ~CPlCkt~~n~gsk~~pN 21 (61)
T PF05715_consen 4 LCPLCKTTLNVGSKDPPN 21 (61)
T ss_pred cCCcccchhhcCCCCCCC
Confidence 488888777555444443
No 168
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=75.08 E-value=12 Score=20.92 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028085 83 EKIIVWGMLLLFVISIPLLFWFARKLYP 110 (214)
Q Consensus 83 ~~i~~~~~l~~~i~~~~~~~~~~~~~~~ 110 (214)
+...|..++.+++.++...+|+..+...
T Consensus 9 L~~~F~~lIC~Fl~~~~~F~~F~~Kqil 36 (54)
T PF06716_consen 9 LLLAFGFLICLFLFCLVVFIWFVYKQIL 36 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655444
No 169
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.84 E-value=1.8 Score=33.60 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=30.0
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhC
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW 187 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~ 187 (214)
-+.|..||..+.+. .++|=||+|+++||.+.+..+
T Consensus 43 FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cceeeeecccccCC---ccCCCCeeeeHHHHHHHHHHH
Confidence 36899999999944 889999999999999988654
No 170
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.96 E-value=2.8 Score=34.08 Aligned_cols=51 Identities=31% Similarity=0.587 Sum_probs=36.7
Q ss_pred cccccccccccCCCceEEec--CCCccChhhHHHHHHhCCCCccccccccccccC
Q 028085 151 TLCSICLEDYREGENLRVLP--CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
..|+||.+..-..+ .-.+| |+|.-|..|+..-..... .||.||.+...+..
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~-~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDG-RCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCC-CCCccCCccccCcc
Confidence 58999999874443 23555 788888888877665544 49999988766543
No 171
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.80 E-value=1.8 Score=34.08 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=33.8
Q ss_pred cccccccccccCCCceEEe-c---CCCccChhhHHHHHHhCC--------CCcccccccc
Q 028085 151 TLCSICLEDYREGENLRVL-P---CRHEFHSSCVDSWLIRWG--------TFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~---C~H~FH~~Ci~~Wl~~~~--------~~CP~Cr~~i 198 (214)
.+|-+|..++...+..+.+ + |+-++|-.|+..-+.... -.||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999544444333 2 888999999998443221 1599998854
No 172
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=73.56 E-value=1.1 Score=37.32 Aligned_cols=51 Identities=20% Similarity=0.471 Sum_probs=0.0
Q ss_pred Cccccccccc--------------ccCCC--ceEEecCCCccChhhHHHHHHhCC--------CCcccccccccc
Q 028085 150 ETLCSICLED--------------YREGE--NLRVLPCRHEFHSSCVDSWLIRWG--------TFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~--------------~~~~~--~~~~l~C~H~FH~~Ci~~Wl~~~~--------~~CP~Cr~~i~~ 200 (214)
+.+|++|+.. |.+.. ....-||||+--++...-|-+..- ..||.|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5789999965 12211 335678999999999999986531 269999887753
No 173
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=2 Score=34.08 Aligned_cols=37 Identities=22% Similarity=0.576 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCceEEecC----CCccChhhHHHHHHhCC
Q 028085 149 RETLCSICLEDYREGENLRVLPC----RHEFHSSCVDSWLIRWG 188 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C----~H~FH~~Ci~~Wl~~~~ 188 (214)
....|.+|.|.+++.+ ...| .|-||-.|-.+-++.+.
T Consensus 267 apLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhc
Confidence 3468999999999773 4445 89999999999888763
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=72.31 E-value=8 Score=22.76 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=31.6
Q ss_pred cccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 151 TLCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
..|--|-.++..+. ..++-.=...|+.+|.+.-| +.. ||.|--.+...
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~-CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGV-CPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCc-CcCCCCccccC
Confidence 35777777777664 22322213359999999977 355 99998776543
No 175
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=71.90 E-value=6.1 Score=24.94 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=21.9
Q ss_pred CcccccccccccCCC--ceEEe--cCCCccChhhHHHHHHhCCCCccccccccccccCCC
Q 028085 150 ETLCSICLEDYREGE--NLRVL--PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNE 205 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~--~~~~l--~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~ 205 (214)
...|-||-++..... ++... .|+---|+.|.+-=.+..+..||.|+......++.|
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence 457999999864321 33333 377778999997666555557999998876655433
No 176
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=71.63 E-value=1.7 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=17.5
Q ss_pred CcccccccccccCCCceEEe-cCCCccChhhHHHHH
Q 028085 150 ETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWL 184 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl 184 (214)
...|.+|...|.--..-..- .||++|+.+|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 46799999999654322233 389999999986544
No 177
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=71.04 E-value=2.3 Score=24.84 Aligned_cols=39 Identities=18% Similarity=0.483 Sum_probs=23.9
Q ss_pred cccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
|+-|-..+..++ +....-+..||.+|+ .|-.|+.+|...
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPECF---------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTTS---------BETTTTCBTTTS
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEcccc---------ccCCCCCccCCC
Confidence 566666666553 233346777887774 377777776543
No 178
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=69.92 E-value=1.5 Score=25.63 Aligned_cols=12 Identities=25% Similarity=0.938 Sum_probs=6.2
Q ss_pred Cccccccccccc
Q 028085 190 FCPVCRHEIRRS 201 (214)
Q Consensus 190 ~CP~Cr~~i~~~ 201 (214)
.||+|.+++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 599999988654
No 179
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=0.77 Score=37.03 Aligned_cols=48 Identities=35% Similarity=0.693 Sum_probs=38.8
Q ss_pred CcccccccccccCC---CceEEec--------CCCccChhhHHHHHHhCCCCccccccc
Q 028085 150 ETLCSICLEDYREG---ENLRVLP--------CRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~~~~---~~~~~l~--------C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
+..|.||...|... ...+.+. |||..+..|++.-+......||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 35799999999843 2556677 999999999999887766679999874
No 180
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.60 E-value=4.6 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=28.4
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHH
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWL 184 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl 184 (214)
+-.|.||-.....|+.-..++ .-.-|++|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 468999999999998888888 5557999998744
No 181
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=65.56 E-value=0.26 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.578 Sum_probs=19.9
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+.|-.++.... +|.++..|-.... ... .||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~-~~a-~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYK-KEA-FCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEE-EEE-E-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECccccccce-ecc-cCCCcccHHH
Confidence 46888888866332 6666677765532 222 5999988764
No 182
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=65.54 E-value=5.5 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCcccccccccccc
Q 028085 180 VDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 180 i~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
+..|-..... ||.|..++.+..
T Consensus 10 L~G~~ML~~~-Cp~C~~PL~~~k 31 (41)
T PF06677_consen 10 LQGWTMLDEH-CPDCGTPLMRDK 31 (41)
T ss_pred HHhHhHhcCc-cCCCCCeeEEec
Confidence 4567777666 999998888743
No 183
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.82 E-value=3.7 Score=21.24 Aligned_cols=8 Identities=50% Similarity=1.323 Sum_probs=6.0
Q ss_pred Cccccccc
Q 028085 190 FCPVCRHE 197 (214)
Q Consensus 190 ~CP~Cr~~ 197 (214)
.||.|..+
T Consensus 19 ~CP~Cg~~ 26 (33)
T cd00350 19 VCPVCGAP 26 (33)
T ss_pred cCcCCCCc
Confidence 49999663
No 184
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.75 E-value=20 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028085 83 EKIIVWGMLLLFVISIPLLFWFARK 107 (214)
Q Consensus 83 ~~i~~~~~l~~~i~~~~~~~~~~~~ 107 (214)
.+|+..++..+.++.+.+++|.+.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 185
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=62.41 E-value=6.2 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=23.9
Q ss_pred cccccccccccCCCc-eEEecCCCccChhhHHHHHH
Q 028085 151 TLCSICLEDYREGEN-LRVLPCRHEFHSSCVDSWLI 185 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~-~~~l~C~H~FH~~Ci~~Wl~ 185 (214)
..|.+|-..|..... ..--.||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468999888775432 12234899999999876544
No 186
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.01 E-value=2.9 Score=33.51 Aligned_cols=47 Identities=30% Similarity=0.637 Sum_probs=36.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
..+.|.+|...+...+ +.--|.|-|+..|...|....+. ||-||..+
T Consensus 104 ~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~-~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGND-CPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhc-cchhhcCc
Confidence 5568999998887543 12239999999999999988776 99998754
No 187
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=61.82 E-value=14 Score=30.83 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHcCCcEEEEEeCCCCCCeeeee------CCCCCeeeEEEEchhhHHHHH
Q 028085 12 IQNAQAAGYDAAIVYALRKKSPLIYMT------YPEGANVPAFYVTLETGAYLK 59 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~~~~~~~~~~m~------~~~~~~Ip~v~v~~~~g~~L~ 59 (214)
+..|.++||-|+|+-.+... .++..+ ...+.-||+..+...++.+..
T Consensus 108 ~i~Aae~ga~a~~f~~~~~r-riV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 108 AILAAEAGAEALLFESRDPR-RIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred HHHHHHcCCeEEEEecCCce-eEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 45688999999998765443 344433 445678999999999988876
No 188
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.25 E-value=4.2 Score=30.95 Aligned_cols=42 Identities=29% Similarity=0.800 Sum_probs=31.8
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCR 195 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr 195 (214)
..|.+|..-.-.+ ++.=.|+--+|..|+...++... .||-|.
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~-~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRD-ICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccC-cCCchh
Confidence 5899999886633 23334777799999999998844 599994
No 189
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.14 E-value=2.6 Score=24.56 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 028085 151 TLCSICLEDYR 161 (214)
Q Consensus 151 ~~C~ICl~~~~ 161 (214)
..||.|-+.+.
T Consensus 3 f~CP~C~~~~~ 13 (54)
T PF05605_consen 3 FTCPYCGKGFS 13 (54)
T ss_pred cCCCCCCCccC
Confidence 57999988654
No 190
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=59.05 E-value=0.95 Score=30.25 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=15.9
Q ss_pred cccccccccccCCCceEEecC--CCccChhhHHHHHHhCCC---CccccccccccccCCCC
Q 028085 151 TLCSICLEDYREGENLRVLPC--RHEFHSSCVDSWLIRWGT---FCPVCRHEIRRSTSNEG 206 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C--~H~FH~~Ci~~Wl~~~~~---~CP~Cr~~i~~~~~~~~ 206 (214)
..|++|-+.+.-.+ .....| ||.|-+ |....+-.... .|++|.+..........
T Consensus 15 E~C~~C~~~i~~~~-~~~~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~l~~~~~~~ 73 (99)
T PF12660_consen 15 EKCPICGAPIPFDD-LDEAQCENGHVWPR-CALTFLPIQTPGVRVCPVCGRRALDPEPEDP 73 (99)
T ss_dssp ---------------SSEEE-TTS-EEEB--SSS-SBS-SS-EEE-TTT--EEE-GGG-SS
T ss_pred ccccccccccccCC-cCEeECCCCCEEee-eeeeeeeeccCCeeEcCCCCCEEecCccccc
Confidence 47999999876443 223445 999864 43343433222 59999887765554433
No 191
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=58.92 E-value=4.8 Score=20.04 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=8.0
Q ss_pred CccccccccccccCC
Q 028085 190 FCPVCRHEIRRSTSN 204 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~~ 204 (214)
.||.|.+.+.+..+.
T Consensus 1 ~CP~C~s~l~~~~~e 15 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE 15 (28)
T ss_dssp B-TTT--BEEE-CCT
T ss_pred CcCCCCCEeEcCCCC
Confidence 499999998866543
No 192
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=58.89 E-value=4.4 Score=24.21 Aligned_cols=32 Identities=22% Similarity=0.732 Sum_probs=19.4
Q ss_pred eEEecCCCccChhhHHHHHHhCC-----CCccccccccccc
Q 028085 166 LRVLPCRHEFHSSCVDSWLIRWG-----TFCPVCRHEIRRS 201 (214)
Q Consensus 166 ~~~l~C~H~FH~~Ci~~Wl~~~~-----~~CP~Cr~~i~~~ 201 (214)
..+..|.- .+| ..|++.+- ..||+|.++..+.
T Consensus 16 t~VW~Ct~---e~C-~gWmR~nFs~~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 16 TKVWECTS---EDC-NGWMRDNFSFEEEPVCPLCKSPMVSG 52 (59)
T ss_pred eeeEEeCC---CCC-CcccccccccCCCccCCCcCCccccc
Confidence 34555654 345 36776542 2699999887543
No 193
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=58.86 E-value=8.5 Score=35.09 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.5
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEeCC
Q 028085 4 GQCNFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 4 g~C~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
|.-.+..|+++|+.+||.||++|.+.
T Consensus 193 ~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 193 GKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cccchhhhHhhHHHhhcCcEEEeecc
Confidence 44678899999999999999999863
No 194
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=58.18 E-value=14 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.2
Q ss_pred CCCeeeEEEEchhhHHHHHHHhh
Q 028085 41 EGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 41 ~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
++-+||++.++.++.+.+.+.+.
T Consensus 3 ~~~~iP~viv~~~d~~~i~~rLD 25 (77)
T PRK01026 3 EDEKIPQVVVDPKDFKEIQKRLD 25 (77)
T ss_pred cccCCCeeecCHHHHHHHHHHHH
Confidence 34589999999999999887765
No 195
>PF15050 SCIMP: SCIMP protein
Probab=58.03 E-value=22 Score=24.48 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHHHH
Q 028085 102 FWFARK 107 (214)
Q Consensus 102 ~~~~~~ 107 (214)
++++|+
T Consensus 28 yCvcR~ 33 (133)
T PF15050_consen 28 YCVCRW 33 (133)
T ss_pred HHHHHH
Confidence 333443
No 196
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.50 E-value=5.1 Score=26.03 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=11.7
Q ss_pred ccChhhHHHHHHhC
Q 028085 174 EFHSSCVDSWLIRW 187 (214)
Q Consensus 174 ~FH~~Ci~~Wl~~~ 187 (214)
-||..|+..|....
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999753
No 197
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=56.39 E-value=5.8 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC-Ccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~ 196 (214)
-+..|++=...+.. .++-..|||+|-++=+.+.+....+ .||+=-.
T Consensus 175 fs~rdPis~~~I~n--PviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 175 FSNRDPISKKPIVN--PVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred hcccCchhhhhhhc--hhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 34679987777663 4455669999999999999876544 5887433
No 198
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.35 E-value=3.3 Score=35.56 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=27.8
Q ss_pred cccccccccccCCCce---EE--ecCCCccChhhHHHHHHhC
Q 028085 151 TLCSICLEDYREGENL---RV--LPCRHEFHSSCVDSWLIRW 187 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~---~~--l~C~H~FH~~Ci~~Wl~~~ 187 (214)
..||.|....+.+.-- .. .+|+|.||+.|+..|-...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 4599999988876511 22 2499999999999998664
No 199
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=55.52 E-value=2.2 Score=34.27 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=31.0
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCC
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG 188 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~ 188 (214)
..|.+|+++|..+.....+.|.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 48999999998765666777666999999999997644
No 200
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=53.27 E-value=16 Score=22.19 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=29.2
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee-CCCCCeeeEEEEchh
Q 028085 3 RGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 3 rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~-~~~~~~Ip~v~v~~~ 53 (214)
+-+|+|-.|++.+.+.-....-..|...+...-.+. .....++|++++...
T Consensus 8 ~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 8 KPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 357999999999987433333334433322111111 123458999998865
No 202
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=53.02 E-value=9.5 Score=19.08 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=10.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhH
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCV 180 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci 180 (214)
.|.+|-.....+-...-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788877765334444558888999885
No 203
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=52.48 E-value=21 Score=22.51 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCC
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
.+.+.+....++||+++++++.+
T Consensus 51 ~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 51 QVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp CHHHHHHHHHCTT-EEEEEEE-S
T ss_pred HHHHHHHHHHHcCCCEEEEEecc
Confidence 46677888899999999999743
No 204
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=52.45 E-value=30 Score=24.69 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028085 87 VWGMLLLFVISIPLLFWFARKL 108 (214)
Q Consensus 87 ~~~~l~~~i~~~~~~~~~~~~~ 108 (214)
++.++.++++.+++++|+..|+
T Consensus 35 LiaIvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333334444445554443
No 205
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=52.41 E-value=23 Score=22.59 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHcCCcEEEEEeCCCCCCeeeee-------CCCCCeeeEEEEchhh---HHHHHHHhh
Q 028085 12 IQNAQAAGYDAAIVYALRKKSPLIYMT-------YPEGANVPAFYVTLET---GAYLKEHAR 63 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~~~~~~~~~~m~-------~~~~~~Ip~v~v~~~~---g~~L~~~~~ 63 (214)
+..|.++|+..++-|.+.+.++...+. .+.+..-.++||..++ ++.+.+..+
T Consensus 4 vnmA~DAG~d~v~py~~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d~~~a~dml~~ak 65 (81)
T PF09176_consen 4 VNMAYDAGYDHVIPYGGVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRDVALAEDMLEAAK 65 (81)
T ss_dssp HHHHHHTT-SEEEEESS--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-HHHHHHHHHHHH
T ss_pred eeeeecCCcCeEeccCCcCHHHhhhhhcceeEccCCcCCceeEEEECCccHHHHHHHHHHHH
Confidence 467899999999999876544332221 3455778899999986 455555443
No 206
>PLN02189 cellulose synthase
Probab=51.88 E-value=20 Score=34.12 Aligned_cols=53 Identities=19% Similarity=0.468 Sum_probs=35.1
Q ss_pred Cccccccccccc---CCCceEEec-CCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDYR---EGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~---~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
...|.||-++.. +|+.-+... |+---|+.|.+-=.+..+..||-|+....+-+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 358999999965 333222233 77778999995433333447999998876433
No 207
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.44 E-value=8.7 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=25.1
Q ss_pred Cccccccccccc-------CCCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 150 ETLCSICLEDYR-------EGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~-------~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
...|++|-+.=. ..+-.|.| +|.-|-..|-..+. .||.|-.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL-----~CslC~teW~~~R~-~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYL-----HCNLCESEWHVVRV-KCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEE-----EcCCCCCcccccCc-cCCCCCC
Confidence 457999987632 11223444 44457778876644 4999965
No 208
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=51.18 E-value=4.5 Score=23.38 Aligned_cols=12 Identities=50% Similarity=1.115 Sum_probs=5.8
Q ss_pred Cccccccccccc
Q 028085 190 FCPVCRHEIRRS 201 (214)
Q Consensus 190 ~CP~Cr~~i~~~ 201 (214)
+||.|.+.+.+.
T Consensus 26 tCP~C~a~~~~s 37 (54)
T PF09237_consen 26 TCPICGAVIRQS 37 (54)
T ss_dssp E-TTT--EESSH
T ss_pred CCCcchhhccch
Confidence 688887766543
No 209
>PLN02436 cellulose synthase A
Probab=51.14 E-value=20 Score=34.14 Aligned_cols=53 Identities=21% Similarity=0.479 Sum_probs=34.9
Q ss_pred Ccccccccccc---cCCCceEEec-CCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDY---REGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~---~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
...|-||-++. .+||.-+.-. |+---|+.|.+-=.+..+..||.|+....+-+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 35899999996 3444222222 66669999995433333447999998876433
No 210
>PRK00523 hypothetical protein; Provisional
Probab=51.00 E-value=48 Score=20.67 Aligned_cols=16 Identities=6% Similarity=0.492 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 028085 94 FVISIPLLFWFARKLY 109 (214)
Q Consensus 94 ~i~~~~~~~~~~~~~~ 109 (214)
+++.+++.+|+.+++.
T Consensus 15 li~G~~~Gffiark~~ 30 (72)
T PRK00523 15 LIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666677766643
No 211
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.58 E-value=1.6 Score=35.23 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=17.2
Q ss_pred cccccccccccCCCceEEec---CCCccChhhHHHHHHhCCCCcccccc
Q 028085 151 TLCSICLEDYREGENLRVLP---CRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~---C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
..||||-+.-.-+ .++.-. =+|.+|.-|-..|-..+. .||.|-.
T Consensus 173 g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~-~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRI-KCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TT-S-TTT--
T ss_pred CcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCC-CCcCCCC
Confidence 5799998763211 111110 134456668888876644 4999954
No 212
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.53 E-value=24 Score=25.88 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 028085 95 VISIPLLFWFARKLYP 110 (214)
Q Consensus 95 i~~~~~~~~~~~~~~~ 110 (214)
+.++++++|++|.++.
T Consensus 104 ~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 104 LSALAILYFVIRTFRL 119 (163)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444555555555555
No 213
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=49.75 E-value=4.8 Score=23.90 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=15.2
Q ss_pred CceEEe-cCCCccChhhHHHH
Q 028085 164 ENLRVL-PCRHEFHSSCVDSW 183 (214)
Q Consensus 164 ~~~~~l-~C~H~FH~~Ci~~W 183 (214)
+....- .|+|.|+..|..+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344455 58999999998887
No 214
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=49.32 E-value=90 Score=21.88 Aligned_cols=15 Identities=7% Similarity=-0.427 Sum_probs=9.9
Q ss_pred cCCCceEEecccccc
Q 028085 64 GEAGECCIFPLSYAW 78 (214)
Q Consensus 64 ~~~~~~~~~p~~~~~ 78 (214)
..+..+.+.|+....
T Consensus 86 RYG~~Vly~Pp~~~~ 100 (126)
T TIGR03147 86 RFGDFVLYNPPFKWQ 100 (126)
T ss_pred hcCCeEEecCCCCcc
Confidence 345678888987433
No 215
>PF15102 TMEM154: TMEM154 protein family
Probab=49.06 E-value=7.9 Score=27.72 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=5.5
Q ss_pred hhHHHHHHh
Q 028085 178 SCVDSWLIR 186 (214)
Q Consensus 178 ~Ci~~Wl~~ 186 (214)
.=+++|+..
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 446777754
No 216
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=48.86 E-value=21 Score=22.02 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.3
Q ss_pred eeeEEEEchhhHHHHHHHhh
Q 028085 44 NVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 44 ~Ip~v~v~~~~g~~L~~~~~ 63 (214)
+||++.++.++...+.+.+.
T Consensus 3 ~iP~viv~~~~~~~i~~rLd 22 (70)
T PF04210_consen 3 KIPQVIVDPDDFNEIMKRLD 22 (70)
T ss_pred CCCeeeeCHHHHHHHHHHHH
Confidence 59999999999998887664
No 217
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=48.55 E-value=25 Score=25.36 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=6.9
Q ss_pred CCccccccc
Q 028085 189 TFCPVCRHE 197 (214)
Q Consensus 189 ~~CP~Cr~~ 197 (214)
.+||+|-..
T Consensus 33 v~CP~Cgs~ 41 (148)
T PF06676_consen 33 VSCPVCGST 41 (148)
T ss_pred ccCCCCCCC
Confidence 379999764
No 218
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=48.45 E-value=33 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHH--cCCcEEEEEeCCCC
Q 028085 5 QCNFSYKIQNAQA--AGYDAAIVYALRKK 31 (214)
Q Consensus 5 ~C~f~~K~~~a~~--~ga~aviv~~~~~~ 31 (214)
++++.+|+.+..+ .-..|||+||....
T Consensus 32 E~sL~~kv~qv~~qL~~G~avI~~se~~e 60 (70)
T PF06794_consen 32 ELSLEEKVEQVKQQLKSGEAVIVFSELHE 60 (70)
T ss_dssp ---HHHHHHHHHHHHHTTSEEEEE-TTT-
T ss_pred cccHHHHHHHHHHHHHcCCEEEEECCccC
Confidence 4688888877654 34459999986543
No 219
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=47.92 E-value=8.4 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=6.8
Q ss_pred CccccccccccccC
Q 028085 190 FCPVCRHEIRRSTS 203 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~ 203 (214)
.||.|++++.....
T Consensus 4 ~CP~C~k~~~~~~~ 17 (57)
T PF03884_consen 4 KCPICGKPVEWSPE 17 (57)
T ss_dssp E-TTT--EEE-SSS
T ss_pred cCCCCCCeecccCC
Confidence 49999988766433
No 220
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=47.30 E-value=12 Score=26.91 Aligned_cols=15 Identities=7% Similarity=-0.208 Sum_probs=6.2
Q ss_pred cCCCceEEecccccc
Q 028085 64 GEAGECCIFPLSYAW 78 (214)
Q Consensus 64 ~~~~~~~~~p~~~~~ 78 (214)
..+..+.+.|+...+
T Consensus 86 rYG~~Vl~~Pp~~~~ 100 (148)
T PF03918_consen 86 RYGEFVLYEPPFKGF 100 (148)
T ss_dssp HHTTT-EES--S---
T ss_pred hcCcceeecCCCCcc
Confidence 345678888987443
No 221
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=47.07 E-value=12 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.535 Sum_probs=17.7
Q ss_pred EEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 167 RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 167 ~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
+.+.|||+|-.- +.-+. +- ||-|-...
T Consensus 4 ~CtrCG~vf~~g--~~~il--~G-Cp~CG~nk 30 (112)
T COG3364 4 QCTRCGEVFDDG--SEEIL--SG-CPKCGCNK 30 (112)
T ss_pred eecccccccccc--cHHHH--cc-Cccccchh
Confidence 467899999876 33332 34 99995543
No 222
>PF15353 HECA: Headcase protein family homologue
Probab=47.01 E-value=11 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=13.1
Q ss_pred CCCccChhhHHHHHH
Q 028085 171 CRHEFHSSCVDSWLI 185 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~ 185 (214)
.++..|.+|++.|-.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 488999999999964
No 223
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.92 E-value=58 Score=20.17 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhc
Q 028085 95 VISIPLLFWFARKLY 109 (214)
Q Consensus 95 i~~~~~~~~~~~~~~ 109 (214)
++.+++.+|+.++..
T Consensus 15 l~G~~~G~fiark~~ 29 (71)
T COG3763 15 LAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556677776643
No 224
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.62 E-value=35 Score=27.75 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhc
Q 028085 95 VISIPLLFWFARKLY 109 (214)
Q Consensus 95 i~~~~~~~~~~~~~~ 109 (214)
++++++++|++.|+|
T Consensus 268 IVLIMvIIYLILRYR 282 (299)
T PF02009_consen 268 IVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455554444
No 225
>PRK11827 hypothetical protein; Provisional
Probab=46.06 E-value=8 Score=23.21 Aligned_cols=10 Identities=40% Similarity=1.115 Sum_probs=6.0
Q ss_pred cccccccccc
Q 028085 191 CPVCRHEIRR 200 (214)
Q Consensus 191 CP~Cr~~i~~ 200 (214)
||.|+.++..
T Consensus 11 CP~ckg~L~~ 20 (60)
T PRK11827 11 CPVCNGKLWY 20 (60)
T ss_pred CCCCCCcCeE
Confidence 6666666543
No 226
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=45.78 E-value=19 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHH
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLI 185 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~ 185 (214)
.|.||-.++..|+.-..++= -.-|+.|+..=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 69999999999965555555 5679999977543
No 227
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.72 E-value=9.8 Score=27.52 Aligned_cols=44 Identities=30% Similarity=0.560 Sum_probs=28.9
Q ss_pred ccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 154 SICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 154 ~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.||+.-=...+..-.-| =.+-||.+|-.+-+.. ||.|..+|.-.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~----Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTITS----CPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHHH----CcCCCCCCCCc
Confidence 36665544444444443 3567999998886633 99999988643
No 228
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=45.56 E-value=47 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.2
Q ss_pred CCeeeEEEEchhhHHHHHHHh
Q 028085 42 GANVPAFYVTLETGAYLKEHA 62 (214)
Q Consensus 42 ~~~Ip~v~v~~~~g~~L~~~~ 62 (214)
+-.||+.....+.|..+.+..
T Consensus 206 gd~IPAW~FD~ktG~Wv~~G~ 226 (807)
T PF10577_consen 206 GDSIPAWRFDEKTGAWVKSGL 226 (807)
T ss_pred CCeeeeeEecCCcceeEecce
Confidence 468999999999998877643
No 229
>PRK01844 hypothetical protein; Provisional
Probab=45.04 E-value=66 Score=20.06 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHh
Q 028085 95 VISIPLLFWFARKL 108 (214)
Q Consensus 95 i~~~~~~~~~~~~~ 108 (214)
++.+++.+|+.+++
T Consensus 15 i~G~~~Gff~ark~ 28 (72)
T PRK01844 15 VAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666766664
No 230
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=44.87 E-value=4.8 Score=22.12 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=14.5
Q ss_pred EecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 168 VLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 168 ~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
-..|||.|-..--.. ......||.|..
T Consensus 8 C~~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSIS--EDDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcC--CCCCCcCCCCCC
Confidence 345777776432111 112235999987
No 231
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=44.81 E-value=22 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=17.5
Q ss_pred CccccccHH---HHHHHHHHcCCcEEE
Q 028085 1 MIRGQCNFS---YKIQNAQAAGYDAAI 24 (214)
Q Consensus 1 v~rg~C~f~---~K~~~a~~~ga~avi 24 (214)
||||+-.+. .+++.|.++||+-||
T Consensus 42 vQRGEPAi~dKw~RA~~AL~~GaDLVi 68 (388)
T PF05636_consen 42 VQRGEPAIIDKWTRAEMALKNGADLVI 68 (388)
T ss_dssp SBTSSB-SS-HHHHHHHHHHHT-SEEE
T ss_pred ccCCCeeeCCHHHHHHHHHHcCCCEEE
Confidence 689997554 567777889999988
No 232
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=44.35 E-value=6.8 Score=30.39 Aligned_cols=21 Identities=19% Similarity=0.645 Sum_probs=15.8
Q ss_pred CccccccccccccCCCCCccc
Q 028085 190 FCPVCRHEIRRSTSNEGNEQV 210 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~~~~~~~~ 210 (214)
+||+|..++..+.+.++...+
T Consensus 57 icp~cs~pv~~~~de~~~~~v 77 (250)
T KOG3183|consen 57 ICPLCSKPVPTKKDEAPDKVV 77 (250)
T ss_pred ccCCCCCCCCCCCCcchhhhh
Confidence 799999999888666655443
No 233
>PRK04966 hypothetical protein; Provisional
Probab=44.06 E-value=46 Score=20.80 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHH--cCCcEEEEEeCCCC
Q 028085 5 QCNFSYKIQNAQA--AGYDAAIVYALRKK 31 (214)
Q Consensus 5 ~C~f~~K~~~a~~--~ga~aviv~~~~~~ 31 (214)
++++.+|+.+..+ .-..|+|+|+..+.
T Consensus 32 E~sl~~kv~qv~~qL~~G~~viv~se~~E 60 (72)
T PRK04966 32 ERSLEQKVADVKRQLQSGEAVLVWSELHE 60 (72)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 4789999988754 44569999985543
No 234
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=43.09 E-value=13 Score=21.61 Aligned_cols=22 Identities=41% Similarity=0.842 Sum_probs=10.4
Q ss_pred CCCccChhhHHHHHHhCCCCcccc
Q 028085 171 CRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
|||.|-..=-+. .. ....||.|
T Consensus 34 Cgh~w~~~v~~R-~~-~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDR-TR-RGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhh-cc-CCCCCCCC
Confidence 566554332222 12 23359988
No 235
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.75 E-value=62 Score=21.46 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=14.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028085 76 YAWNKHVEKIIVWGMLLLFVISIPLLFWFARKL 108 (214)
Q Consensus 76 ~~~~~~~~~i~~~~~l~~~i~~~~~~~~~~~~~ 108 (214)
-.|.+ ++|.+..++. .+.+++.++|+.|.
T Consensus 16 ~PWeI--fLItLasVvv--avGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEI--FLITLASVVV--AVGLFAGLFFCVRN 44 (106)
T ss_pred cchHH--HHHHHHHHHH--HHHHHHHHHHHhhh
Confidence 45666 5555555555 33344444444443
No 236
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=41.51 E-value=37 Score=21.39 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHc-----CCcEEEEEeCCCCC----CeeeeeCCCCCeeeEEEEchh
Q 028085 3 RGQCNFSYKIQNAQAA-----GYDAAIVYALRKKS----PLIYMTYPEGANVPAFYVTLE 53 (214)
Q Consensus 3 rg~C~f~~K~~~a~~~-----ga~aviv~~~~~~~----~~~~m~~~~~~~Ip~v~v~~~ 53 (214)
+.+|++-.|++...+. ........|...+. .+..+......++|+++|...
T Consensus 8 ~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~ 67 (85)
T PRK11200 8 RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQK 67 (85)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCE
Confidence 3579999999999876 44455555543321 122221222258999998765
No 237
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=41.05 E-value=54 Score=26.35 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028085 84 KIIVWGMLLLFVISIPLLFWFARK 107 (214)
Q Consensus 84 ~i~~~~~l~~~i~~~~~~~~~~~~ 107 (214)
.|..++++++.++++++-+|+.||
T Consensus 262 giaalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444334444444444333
No 238
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.85 E-value=13 Score=30.31 Aligned_cols=41 Identities=32% Similarity=0.648 Sum_probs=25.4
Q ss_pred Cccccccccccc-----C---CCceEEecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 150 ETLCSICLEDYR-----E---GENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~-----~---~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
...|++|-+.=. . .+-.|.|-| .-|-..|-..+. .||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~C-----slC~teW~~~R~-~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSC-----SLCATEWHYVRV-KCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEc-----CCCCCcccccCc-cCCCCCC
Confidence 347999987632 1 123455544 447778876644 4999965
No 239
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=40.76 E-value=46 Score=21.39 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 5 QCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 5 ~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
.|+|-.|++...+ .|. .--.+|...++... .+. .....++|.+||...
T Consensus 22 ~Cp~C~~ak~~L~~~~i-~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 22 RCGFSRKVVQILNQLGV-DFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred CCcHHHHHHHHHHHcCC-CeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 6999999999876 554 34444533332111 111 123358999999876
No 240
>PRK03972 ribosomal biogenesis protein; Validated
Probab=40.60 E-value=51 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.7
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCC
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKK 31 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~ 31 (214)
+.||+-++.+=+..|.+.|++.+||.|...+
T Consensus 31 i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg 61 (208)
T PRK03972 31 LTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61 (208)
T ss_pred EecCCccHHHHHHHHHHCCCCeEEEEecCCC
Confidence 3689999999999999999999999986433
No 241
>PTZ00370 STEVOR; Provisional
Probab=40.57 E-value=45 Score=26.85 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028085 84 KIIVWGMLLLFVISIPLLFWFAR 106 (214)
Q Consensus 84 ~i~~~~~l~~~i~~~~~~~~~~~ 106 (214)
.|..++++++.++++++-+|+.|
T Consensus 258 giaalvllil~vvliilYiwlyr 280 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433444443344433
No 242
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=40.53 E-value=22 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q 028085 96 ISIPLLFWFARKLY 109 (214)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (214)
++++..+++.++++
T Consensus 32 ~~~~~~~~~~~r~~ 45 (146)
T PF14316_consen 32 LLLILLLWRLWRRW 45 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 243
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=1.3e+02 Score=21.70 Aligned_cols=14 Identities=7% Similarity=-0.299 Sum_probs=9.3
Q ss_pred hcCCCceEEecccc
Q 028085 63 RGEAGECCIFPLSY 76 (214)
Q Consensus 63 ~~~~~~~~~~p~~~ 76 (214)
...+..|.+.|++.
T Consensus 89 aRYG~FVly~Pp~~ 102 (153)
T COG3088 89 ARYGEFVLYKPPLT 102 (153)
T ss_pred HhhcceeeecCCCc
Confidence 34456678888874
No 244
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=40.22 E-value=60 Score=17.27 Aligned_cols=20 Identities=35% Similarity=0.883 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028085 88 WGMLLLFVISIPLLFWFARK 107 (214)
Q Consensus 88 ~~~l~~~i~~~~~~~~~~~~ 107 (214)
..+++++++..++++|+...
T Consensus 14 l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555543
No 245
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=40.00 E-value=11 Score=25.70 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.2
Q ss_pred CccccccccccccCCCCCc
Q 028085 190 FCPVCRHEIRRSTSNEGNE 208 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~~~~~~ 208 (214)
.|+.|+++++-+.+.++.+
T Consensus 87 ~CM~C~~pLTLd~~legke 105 (114)
T PF11023_consen 87 ACMHCKEPLTLDPSLEGKE 105 (114)
T ss_pred ccCcCCCcCccCchhhcch
Confidence 4999999998776555443
No 246
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=39.91 E-value=17 Score=24.94 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCcccccccccccCC--CceEEecCCCccChhhHHHHHHhCCC--Ccccccc
Q 028085 149 RETLCSICLEDYREG--ENLRVLPCRHEFHSSCVDSWLIRWGT--FCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~--~~~~~l~C~H~FH~~Ci~~Wl~~~~~--~CP~Cr~ 196 (214)
++..|++|...|.-- -...-..|+|.+|..|-.. ..+.. .|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 456899999876422 2334455999999999654 22222 6888865
No 247
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=39.74 E-value=36 Score=25.99 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 028085 95 VISIPLLFWFAR 106 (214)
Q Consensus 95 i~~~~~~~~~~~ 106 (214)
.++++-...++-
T Consensus 145 T~LfLSTVVLAN 156 (227)
T PF05399_consen 145 TLLFLSTVVLAN 156 (227)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 248
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=39.68 E-value=32 Score=20.84 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEeCCCCCCee-eee--CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQAAGYDAAIVYALRKKSPLI-YMT--YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~-~m~--~~~~~~Ip~v~v~~~ 53 (214)
-+|++-.+++...+.-....-.+|...+.+.. .+. .....++|++++...
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 46999999999877555555666654332211 111 112238999998865
No 249
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=39.38 E-value=93 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=8.1
Q ss_pred CCHHHHhcCCceee
Q 028085 125 LPRSTVNALPSFVF 138 (214)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (214)
+.-..+.++|....
T Consensus 39 ~hyasLqrLPv~~s 52 (74)
T PF05083_consen 39 LHYASLQRLPVPSS 52 (74)
T ss_pred hHHHHHHhCCCCCC
Confidence 34456667776444
No 250
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.17 E-value=19 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=15.1
Q ss_pred cccccccccCCCceEEecCCCccCh
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHS 177 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~ 177 (214)
=-||-+.-+ .+....|||.|+.
T Consensus 60 lfi~qs~~~---rv~rcecghsf~d 81 (165)
T COG4647 60 LFICQSAQK---RVIRCECGHSFGD 81 (165)
T ss_pred EEEEecccc---cEEEEeccccccC
Confidence 346665533 5777789999984
No 251
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=39.05 E-value=29 Score=21.00 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=22.6
Q ss_pred cccccccccccC--CCceEEec-CCCccChhhHHH
Q 028085 151 TLCSICLEDYRE--GENLRVLP-CRHEFHSSCVDS 182 (214)
Q Consensus 151 ~~C~ICl~~~~~--~~~~~~l~-C~H~FH~~Ci~~ 182 (214)
..|+.|-..... .+....-| ||+.+|.+---.
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 579999988776 34455555 888888775443
No 252
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=38.92 E-value=32 Score=23.03 Aligned_cols=32 Identities=28% Similarity=0.674 Sum_probs=22.4
Q ss_pred CCcccccccccccCCCceEEec--CCCccChhhHHH
Q 028085 149 RETLCSICLEDYREGENLRVLP--CRHEFHSSCVDS 182 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~ 182 (214)
....|.||... .|-.+.--. |...||-.|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 34689999998 443333333 777999999754
No 253
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=38.90 E-value=21 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=17.4
Q ss_pred CCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 171 CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
||+.=|.-=+.++.+. . .||.|++++...
T Consensus 65 CGvC~~~LT~~EY~~~-~-~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYGMC-G-SCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHhhc-C-CCCCcCCCCCcc
Confidence 5654444444555433 2 499999987644
No 254
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=38.24 E-value=17 Score=24.58 Aligned_cols=23 Identities=30% Similarity=0.811 Sum_probs=14.7
Q ss_pred cccccccccc--CCCceEEec-CCCcc
Q 028085 152 LCSICLEDYR--EGENLRVLP-CRHEF 175 (214)
Q Consensus 152 ~C~ICl~~~~--~~~~~~~l~-C~H~F 175 (214)
.|+-|-++|. ++ ....-| |+|.+
T Consensus 4 ~CP~C~seytY~dg-~~~iCpeC~~EW 29 (109)
T TIGR00686 4 PCPKCNSEYTYHDG-TQLICPSCLYEW 29 (109)
T ss_pred cCCcCCCcceEecC-CeeECccccccc
Confidence 5999988864 44 334445 78844
No 255
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=38.01 E-value=20 Score=22.05 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.0
Q ss_pred eeeEEEEchhhHHHHHHHhh
Q 028085 44 NVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 44 ~Ip~v~v~~~~g~~L~~~~~ 63 (214)
+||.++++-++.+.+.+.+.
T Consensus 3 ~iP~v~v~~~d~~~i~~rLd 22 (70)
T TIGR01149 3 KAPAVFVEPDEFNEVMKRLD 22 (70)
T ss_pred CCCeeecCHHHHHHHHHHHH
Confidence 58999999999998887664
No 256
>CHL00038 psbL photosystem II protein L
Probab=37.66 E-value=67 Score=17.08 Aligned_cols=15 Identities=40% Similarity=1.072 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028085 87 VWGMLLLFVISIPLL 101 (214)
Q Consensus 87 ~~~~l~~~i~~~~~~ 101 (214)
.++++++++.+++..
T Consensus 19 y~GLLlifvl~vlfs 33 (38)
T CHL00038 19 YWGLLLIFVLAVLFS 33 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555444444433
No 257
>PRK05978 hypothetical protein; Provisional
Probab=37.33 E-value=20 Score=25.81 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCccChhhHHHHHHhCCCCccccccccccccCCCCC
Q 028085 172 RHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNEGN 207 (214)
Q Consensus 172 ~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~~~ 207 (214)
||.|+ .+++.+.. ||.|-.++......+..
T Consensus 42 G~LF~-----g~Lkv~~~-C~~CG~~~~~~~a~Dgp 71 (148)
T PRK05978 42 GKLFR-----AFLKPVDH-CAACGEDFTHHRADDLP 71 (148)
T ss_pred Ccccc-----cccccCCC-ccccCCccccCCccccC
Confidence 46675 67776555 99999888766544433
No 258
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=37.31 E-value=58 Score=19.33 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.5
Q ss_pred HHHHhcC
Q 028085 104 FARKLYP 110 (214)
Q Consensus 104 ~~~~~~~ 110 (214)
++|+...
T Consensus 26 ~IRri~~ 32 (58)
T PF13314_consen 26 FIRRILI 32 (58)
T ss_pred HHHHHHH
Confidence 4555443
No 259
>PF14979 TMEM52: Transmembrane 52
Probab=37.16 E-value=1.3e+02 Score=21.63 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.7
Q ss_pred ccccchhHH
Q 028085 75 SYAWNKHVE 83 (214)
Q Consensus 75 ~~~~~~~~~ 83 (214)
...|+..+.
T Consensus 13 ~~~W~~LWy 21 (154)
T PF14979_consen 13 QTRWSSLWY 21 (154)
T ss_pred ccceehhhH
Confidence 356765443
No 260
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=36.93 E-value=31 Score=20.97 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=28.6
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
.+|++-.|++.+.+ .|.. .-.+|...+++.. .+. -....++|++++...
T Consensus 9 ~~C~~C~ka~~~L~~~gi~-~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLP-YVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred CCChhHHHHHHHHHHCCCc-eEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 46999999999765 5554 3345544332211 011 112357899988765
No 261
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=36.81 E-value=20 Score=21.71 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=8.1
Q ss_pred Cccccccccc
Q 028085 190 FCPVCRHEIR 199 (214)
Q Consensus 190 ~CP~Cr~~i~ 199 (214)
.||.|++++.
T Consensus 8 ~CP~C~k~~~ 17 (62)
T PRK00418 8 NCPTCGKPVE 17 (62)
T ss_pred cCCCCCCccc
Confidence 5999988764
No 262
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=36.74 E-value=14 Score=17.91 Aligned_cols=9 Identities=56% Similarity=1.313 Sum_probs=7.1
Q ss_pred Ccccccccc
Q 028085 190 FCPVCRHEI 198 (214)
Q Consensus 190 ~CP~Cr~~i 198 (214)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 499997766
No 263
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=36.70 E-value=9.5 Score=20.80 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhcC
Q 028085 95 VISIPLLFWFARKLYP 110 (214)
Q Consensus 95 i~~~~~~~~~~~~~~~ 110 (214)
+..+.++..+++|+|.
T Consensus 19 lv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 19 LVGIGIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555554
No 264
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.81 E-value=26 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=17.7
Q ss_pred cccccccccccCCCceEEecCCCcc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEF 175 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~F 175 (214)
..||+|-+.+...+.-..-+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4699999999765543333448988
No 265
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=35.74 E-value=68 Score=17.13 Aligned_cols=15 Identities=40% Similarity=0.724 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028085 87 VWGMLLLFVISIPLL 101 (214)
Q Consensus 87 ~~~~l~~~i~~~~~~ 101 (214)
.++++++++.+++..
T Consensus 20 y~GlLlifvl~vLFs 34 (39)
T PRK00753 20 YLGLLLVFVLGILFS 34 (39)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 266
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=35.09 E-value=1.2e+02 Score=19.44 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028085 84 KIIVWGMLLLFVISIPLLF 102 (214)
Q Consensus 84 ~i~~~~~l~~~i~~~~~~~ 102 (214)
.|.|++.++.|++.+++++
T Consensus 39 VI~FWv~LA~FV~~lF~iL 57 (90)
T PF15183_consen 39 VIAFWVSLAAFVVFLFLIL 57 (90)
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 4566666665544444333
No 267
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.07 E-value=62 Score=20.15 Aligned_cols=48 Identities=25% Similarity=0.583 Sum_probs=29.8
Q ss_pred ccccccccccCCC-ceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 152 LCSICLEDYREGE-NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 152 ~C~ICl~~~~~~~-~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.|--|=.++..+. ..++-.=.|.||.+|.+.-| ... ||.|--.+....
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~-CPnCGGelv~RP 55 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGL-CPNCGGELVARP 55 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCc-CCCCCchhhcCc
Confidence 3555656655442 22222226789999998766 344 999987776543
No 268
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=34.50 E-value=77 Score=16.82 Aligned_cols=14 Identities=43% Similarity=1.175 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028085 88 WGMLLLFVISIPLL 101 (214)
Q Consensus 88 ~~~l~~~i~~~~~~ 101 (214)
+++++++++.++..
T Consensus 19 ~GLllifvl~vLFs 32 (37)
T PF02419_consen 19 WGLLLIFVLAVLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34444334433333
No 269
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=34.47 E-value=18 Score=19.18 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=17.2
Q ss_pred cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 170 PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 170 ~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.||++||..=--+ . ... .|..|...+.+.
T Consensus 6 ~Cg~~Yh~~~~pP-~-~~~-~Cd~cg~~L~qR 34 (36)
T PF05191_consen 6 KCGRIYHIEFNPP-K-VEG-VCDNCGGELVQR 34 (36)
T ss_dssp TTTEEEETTTB---S-STT-BCTTTTEBEBEE
T ss_pred CCCCccccccCCC-C-CCC-ccCCCCCeeEeC
Confidence 3899998543221 1 112 599888877654
No 270
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=34.27 E-value=57 Score=21.99 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=18.3
Q ss_pred CCccChhhHHHHHHhC--------CCCcccccc
Q 028085 172 RHEFHSSCVDSWLIRW--------GTFCPVCRH 196 (214)
Q Consensus 172 ~H~FH~~Ci~~Wl~~~--------~~~CP~Cr~ 196 (214)
.=.|+..||..+.... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 5569999998887542 226999876
No 271
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=34.25 E-value=91 Score=26.58 Aligned_cols=16 Identities=13% Similarity=0.139 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhcC
Q 028085 95 VISIPLLFWFARKLYP 110 (214)
Q Consensus 95 i~~~~~~~~~~~~~~~ 110 (214)
+.++++.+|++++.+.
T Consensus 32 l~Ll~ll~yl~~~CC~ 47 (406)
T PF04906_consen 32 LSLLFLLIYLICRCCC 47 (406)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 4444555666666555
No 272
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=33.92 E-value=1.7e+02 Score=20.55 Aligned_cols=14 Identities=7% Similarity=-0.266 Sum_probs=9.5
Q ss_pred hcCCCceEEecccc
Q 028085 63 RGEAGECCIFPLSY 76 (214)
Q Consensus 63 ~~~~~~~~~~p~~~ 76 (214)
...+..+.+.|+..
T Consensus 85 ~RYG~~Vl~~Pp~~ 98 (126)
T PRK10144 85 ERYGDFVRYNPPLT 98 (126)
T ss_pred HhcCCeEEecCCCC
Confidence 34456788889873
No 273
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.90 E-value=19 Score=25.02 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=17.2
Q ss_pred ccChhhHHHHHHhCCCCccccccccccc
Q 028085 174 EFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 174 ~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.||.+|-..-+. .||.|..+|.-.
T Consensus 29 afcskcgeati~----qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHh----cCCccCCccccc
Confidence 488888776543 299999887543
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.81 E-value=39 Score=31.01 Aligned_cols=46 Identities=28% Similarity=0.739 Sum_probs=27.0
Q ss_pred CCccccccccccc----CC----CceEEe-c-CCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYR----EG----ENLRVL-P-CRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~----~~----~~~~~l-~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.+.+|+-|-..|. .| |....+ | |+|.-|..=|.. .+ .||+|...+.
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~-~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YN-CCPLCHSMES 1185 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cc-cCccccChhh
Confidence 4456776666653 11 222222 3 999888766543 23 5999987654
No 275
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=33.73 E-value=19 Score=25.62 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=14.2
Q ss_pred cCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 170 PCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 170 ~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
.|||+|+- .+..||.|.+.-
T Consensus 34 ~CG~v~~P---------Pr~~Cp~C~~~~ 53 (140)
T COG1545 34 KCGRVYFP---------PRAYCPKCGSET 53 (140)
T ss_pred CCCeEEcC---------CcccCCCCCCCC
Confidence 48999883 234599998763
No 276
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=33.52 E-value=13 Score=36.75 Aligned_cols=50 Identities=28% Similarity=0.587 Sum_probs=37.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC---Ccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT---FCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~---~CP~Cr~~i 198 (214)
....|-+|.....+.+.+...-|--.||..|+.+-+..-.. .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34579999999876544444447778999999998865433 799998765
No 277
>PRK00304 hypothetical protein; Provisional
Probab=33.46 E-value=81 Score=19.88 Aligned_cols=27 Identities=7% Similarity=0.196 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHH--cCCcEEEEEeCCCC
Q 028085 5 QCNFSYKIQNAQA--AGYDAAIVYALRKK 31 (214)
Q Consensus 5 ~C~f~~K~~~a~~--~ga~aviv~~~~~~ 31 (214)
++++.+|+.+..+ .-..+||+||....
T Consensus 31 E~sL~~kv~qv~~qL~~G~~vIvfse~~e 59 (75)
T PRK00304 31 ETPLETRVLRVRQALTKGQAVILFDPESQ 59 (75)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 4788888776543 34459999985543
No 278
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=33.01 E-value=19 Score=32.48 Aligned_cols=34 Identities=29% Similarity=0.713 Sum_probs=23.4
Q ss_pred ceEEec-CCCccChhhHHHHHHhCCCCccccccccc
Q 028085 165 NLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 165 ~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
++...| |--+||.+-++.-..++.. ||.||.+-.
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGH-CPFCrTS~d 1077 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGH-CPFCRTSKD 1077 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCC-CCccccccc
Confidence 333444 6777888777776666566 999998643
No 279
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=32.65 E-value=29 Score=19.68 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCcccccccccc--cCCCceEEecCCCccChhhHHH
Q 028085 149 RETLCSICLEDY--REGENLRVLPCRHEFHSSCVDS 182 (214)
Q Consensus 149 ~~~~C~ICl~~~--~~~~~~~~l~C~H~FH~~Ci~~ 182 (214)
....|.+|-+.+ ...+-++-.-|+-..|++|++.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 345799999998 3344555566999999999854
No 280
>PF15122 TMEM206: TMEM206 protein family
Probab=32.61 E-value=66 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=10.1
Q ss_pred ceEEecCCCccChh
Q 028085 165 NLRVLPCRHEFHSS 178 (214)
Q Consensus 165 ~~~~l~C~H~FH~~ 178 (214)
....|.|.|.||.+
T Consensus 69 ~a~llsCkhhyyd~ 82 (298)
T PF15122_consen 69 KAQLLSCKHHYYDD 82 (298)
T ss_pred cchhcccccccccc
Confidence 34577899988853
No 281
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=31.98 E-value=39 Score=20.99 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=28.0
Q ss_pred cccccHHHHHHHHHH-cCCcEEEEEeCCCCCCeeeee-CCCCCeeeEEEEchh
Q 028085 3 RGQCNFSYKIQNAQA-AGYDAAIVYALRKKSPLIYMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 3 rg~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~~m~-~~~~~~Ip~v~v~~~ 53 (214)
+-+|+|-.++++..+ .|..-. ..|...+...-.+. .....++|++++...
T Consensus 15 ~~~Cp~C~~ak~~L~~~gi~y~-~idi~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 15 KPGCPFCAKAKATLKEKGYDFE-EIPLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCCHhHHHHHHHHHHcCCCcE-EEECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 346999999999876 444333 34432221111121 123368899988665
No 282
>PRK10220 hypothetical protein; Provisional
Probab=31.90 E-value=31 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.812 Sum_probs=14.6
Q ss_pred cccccccccccCCC-ceEEec-CCCcc
Q 028085 151 TLCSICLEDYREGE-NLRVLP-CRHEF 175 (214)
Q Consensus 151 ~~C~ICl~~~~~~~-~~~~l~-C~H~F 175 (214)
..|+-|-++|.=.| ....-| |+|-|
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 35898988864332 334444 77743
No 283
>PTZ00046 rifin; Provisional
Probab=31.71 E-value=78 Score=26.45 Aligned_cols=16 Identities=6% Similarity=0.301 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhcC
Q 028085 95 VISIPLLFWFARKLYP 110 (214)
Q Consensus 95 i~~~~~~~~~~~~~~~ 110 (214)
++++++++|++.|+|+
T Consensus 327 IVLIMvIIYLILRYRR 342 (358)
T PTZ00046 327 IVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4444555566655544
No 284
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=71 Score=20.08 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEeCCCCC-Ceeeee--CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQA-AGYDAAIVYALRKKS-PLIYMT--YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~-~ga~aviv~~~~~~~-~~~~m~--~~~~~~Ip~v~v~~~ 53 (214)
-+|+|-.|++++.. .|..-..+..+.... ..-.|. .....++|+++|...
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 35999999999885 777666655433321 222232 223479999999883
No 285
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=31.61 E-value=1.9e+02 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 028085 87 VWGMLLLFVISIPLLFWFARKLYP 110 (214)
Q Consensus 87 ~~~~l~~~i~~~~~~~~~~~~~~~ 110 (214)
+.++++++++++.+++|++|+++.
T Consensus 279 LG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 279 LGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Confidence 333444334444444555555444
No 286
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=31.43 E-value=24 Score=32.01 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=26.2
Q ss_pred cccccccccccCCCceEEecCCCccCh--hhHHHHHHhCC------CCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHS--SCVDSWLIRWG------TFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~--~Ci~~Wl~~~~------~~CP~Cr~~i~ 199 (214)
..|+|+.-. ..+||++..|+ .|++.-+-.+. ..||+|.+.+.
T Consensus 307 L~CPl~~~R-------m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 307 LNCPLSKMR-------MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ecCCcccce-------eecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 468876555 45666665555 88876543221 17999977653
No 287
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=31.33 E-value=80 Score=26.30 Aligned_cols=16 Identities=6% Similarity=0.301 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhcC
Q 028085 95 VISIPLLFWFARKLYP 110 (214)
Q Consensus 95 i~~~~~~~~~~~~~~~ 110 (214)
++++++++|++.|+|+
T Consensus 322 IVLIMvIIYLILRYRR 337 (353)
T TIGR01477 322 IVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4444555666655544
No 288
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.95 E-value=66 Score=30.87 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=33.7
Q ss_pred CCccccccccccc---CCCceEEe-cCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYR---EGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~---~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
+...|-||-++.. +||.-+.. .|+---|+.|.+-=.+..+..||.|+....+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3457999999964 33322222 2666699999944333334479999988764
No 289
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=30.89 E-value=23 Score=27.56 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCC-Cccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPV 193 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~ 193 (214)
-+..|+|-+..+.. .+.-..|.|.|-.+-|...++..-+ .||.
T Consensus 188 ~~nrCpitl~p~~~--pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFY--PILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcchh--HHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 34689999988763 3334459999999999998874333 3774
No 290
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=47 Score=30.18 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=34.8
Q ss_pred ccccccccccCCCceEEecCCC-ccChhhHHHHHHhCC-----CCcccccccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRH-EFHSSCVDSWLIRWG-----TFCPVCRHEIRRST 202 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H-~FH~~Ci~~Wl~~~~-----~~CP~Cr~~i~~~~ 202 (214)
.|+||-..+. -+..=.||| .-+..|......... ..||.||..+.+..
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 5999988766 334556999 799999988665443 14799999776554
No 291
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=30.70 E-value=25 Score=21.05 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=8.9
Q ss_pred Cccccccccccc
Q 028085 190 FCPVCRHEIRRS 201 (214)
Q Consensus 190 ~CP~Cr~~i~~~ 201 (214)
-||.||.++.-.
T Consensus 10 aCP~~kg~L~~~ 21 (60)
T COG2835 10 ACPVCKGPLVYD 21 (60)
T ss_pred eccCcCCcceEe
Confidence 399999887544
No 292
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=30.48 E-value=68 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCcEEEEEe
Q 028085 8 FSYKIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 8 f~~K~~~a~~~ga~aviv~~ 27 (214)
+.+=..+|++.||.|||=..
T Consensus 31 l~eM~e~A~~lGAnAVVGvr 50 (74)
T TIGR03884 31 VENLREKVKAKGGMGLIAFR 50 (74)
T ss_pred HHHHHHHHHHcCCCEEEEEE
Confidence 34456789999999998554
No 293
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.11 E-value=98 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028085 89 GMLLLFVISIPLLFWFARKLY 109 (214)
Q Consensus 89 ~~l~~~i~~~~~~~~~~~~~~ 109 (214)
+++++++.+++.+++..||.+
T Consensus 265 IliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333555555555555543
No 294
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=29.77 E-value=62 Score=19.57 Aligned_cols=49 Identities=12% Similarity=-0.028 Sum_probs=28.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeee-CCCCCeeeEEEEch
Q 028085 4 GQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMT-YPEGANVPAFYVTL 52 (214)
Q Consensus 4 g~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~-~~~~~~Ip~v~v~~ 52 (214)
-+|++-.|++.+.+.--...-..|...++....-. .....++|++++..
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 47999999999776443344445544332221111 11225899998853
No 295
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=36 Score=28.79 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=17.2
Q ss_pred HHHHhCCCCccccccccccccC
Q 028085 182 SWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 182 ~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
.|+..+...||-|...|....+
T Consensus 362 kwl~~N~krCP~C~v~IEr~eG 383 (445)
T KOG1814|consen 362 KWLESNSKRCPKCKVVIERSEG 383 (445)
T ss_pred HHHHhcCCCCCcccceeecCCC
Confidence 6877776679999998876654
No 296
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=29.55 E-value=23 Score=25.51 Aligned_cols=7 Identities=57% Similarity=1.450 Sum_probs=3.6
Q ss_pred Ccccccc
Q 028085 190 FCPVCRH 196 (214)
Q Consensus 190 ~CP~Cr~ 196 (214)
.||-|-+
T Consensus 135 rc~eCG~ 141 (153)
T KOG3352|consen 135 RCPECGH 141 (153)
T ss_pred cCCcccc
Confidence 3555544
No 297
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=29.55 E-value=44 Score=21.92 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
-.|+|-.|++...+ .|..- ..+|..+++... .+. .....++|.+||...
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~-~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPF-AYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGE 76 (97)
T ss_pred CCCchHHHHHHHHHHcCCCE-EEEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 46999999999875 66643 345543332111 111 122348999999876
No 298
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.55 E-value=47 Score=25.92 Aligned_cols=24 Identities=29% Similarity=0.754 Sum_probs=13.8
Q ss_pred hhhHHHHHHhCCCCccccccccccc
Q 028085 177 SSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 177 ~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
..|-.. +-++..+||+|++.-...
T Consensus 198 ~sC~qq-IHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 198 QSCHQQ-IHRNAPICPLCKAKSRSR 221 (230)
T ss_pred HhHHHH-HhcCCCCCcccccccccC
Confidence 345433 223455899998865433
No 299
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.12 E-value=45 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.4
Q ss_pred CCccccccccccccC
Q 028085 189 TFCPVCRHEIRRSTS 203 (214)
Q Consensus 189 ~~CP~Cr~~i~~~~~ 203 (214)
..||.|...+....+
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 469999998876543
No 300
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.07 E-value=1.2e+02 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.4
Q ss_pred cccchhHHHH
Q 028085 76 YAWNKHVEKI 85 (214)
Q Consensus 76 ~~~~~~~~~i 85 (214)
+.|...++..
T Consensus 33 tpWNysiL~L 42 (125)
T PF15048_consen 33 TPWNYSILAL 42 (125)
T ss_pred CCcchHHHHH
Confidence 5687633433
No 301
>PRK00420 hypothetical protein; Validated
Probab=29.01 E-value=46 Score=22.77 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.0
Q ss_pred CCCccccccccccc
Q 028085 188 GTFCPVCRHEIRRS 201 (214)
Q Consensus 188 ~~~CP~Cr~~i~~~ 201 (214)
...||.|...+.-.
T Consensus 40 ~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 40 EVVCPVHGKVYIVK 53 (112)
T ss_pred ceECCCCCCeeeec
Confidence 33688887765543
No 302
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=28.88 E-value=6.3 Score=23.33 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=16.8
Q ss_pred cccc--ccccccCCCc--e--EEec-CCCccChhhHHHH
Q 028085 152 LCSI--CLEDYREGEN--L--RVLP-CRHEFHSSCVDSW 183 (214)
Q Consensus 152 ~C~I--Cl~~~~~~~~--~--~~l~-C~H~FH~~Ci~~W 183 (214)
-|+- |-..+...+. . ..-+ |++.|+..|-.+|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5655 6655544431 1 3334 8999999998777
No 303
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.88 E-value=79 Score=30.48 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=32.3
Q ss_pred CcccccccccccCCC--ceEE-e-cCCCccChhhHHHHHHhC-CCCcccccccccc
Q 028085 150 ETLCSICLEDYREGE--NLRV-L-PCRHEFHSSCVDSWLIRW-GTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~--~~~~-l-~C~H~FH~~Ci~~Wl~~~-~~~CP~Cr~~i~~ 200 (214)
...|-||-++..... ++.+ . .|+-=-|+.|.+ +-++. +..||.|+....+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchhh
Confidence 347999999964321 3322 2 266668999994 33333 3479999987763
No 304
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=28.83 E-value=26 Score=31.43 Aligned_cols=28 Identities=39% Similarity=0.883 Sum_probs=21.7
Q ss_pred CCCccChhhHHHHHHhC----CCCcccccccc
Q 028085 171 CRHEFHSSCVDSWLIRW----GTFCPVCRHEI 198 (214)
Q Consensus 171 C~H~FH~~Ci~~Wl~~~----~~~CP~Cr~~i 198 (214)
|+-.||..|+..|+... ...||-||.-.
T Consensus 41 c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 41 CGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 78999999999999654 12588887643
No 305
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.79 E-value=1.1e+02 Score=18.99 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEeCC
Q 028085 6 CNFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 6 C~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
-++..+.+.|.+.|+..+|+....
T Consensus 38 ~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 38 EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred CCHHHHHHHHHHcCCCEEEEECcc
Confidence 478899999999999988888743
No 306
>PRK01343 zinc-binding protein; Provisional
Probab=28.52 E-value=25 Score=20.89 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=8.1
Q ss_pred Cccccccccc
Q 028085 190 FCPVCRHEIR 199 (214)
Q Consensus 190 ~CP~Cr~~i~ 199 (214)
.||+|+++..
T Consensus 11 ~CP~C~k~~~ 20 (57)
T PRK01343 11 PCPECGKPST 20 (57)
T ss_pred cCCCCCCcCc
Confidence 5999998764
No 307
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.37 E-value=83 Score=25.34 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 028085 100 LLFWFARKLY 109 (214)
Q Consensus 100 ~~~~~~~~~~ 109 (214)
+++.+++.++
T Consensus 275 liiLYiWlyr 284 (295)
T TIGR01478 275 LIILYIWLYR 284 (295)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 308
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=28.28 E-value=23 Score=26.60 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=12.6
Q ss_pred hhhHHHHHH-hCCCCcccccccc
Q 028085 177 SSCVDSWLI-RWGTFCPVCRHEI 198 (214)
Q Consensus 177 ~~Ci~~Wl~-~~~~~CP~Cr~~i 198 (214)
+.||++=-. .++. ||+||-..
T Consensus 97 ktCIrkn~~~~gnp-CPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNP-CPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCC-CCccccce
Confidence 457765322 2344 99999754
No 309
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.27 E-value=59 Score=22.71 Aligned_cols=26 Identities=38% Similarity=0.806 Sum_probs=16.3
Q ss_pred EEecC--CCccChhhHHHHHHh----------CCCCccccccc
Q 028085 167 RVLPC--RHEFHSSCVDSWLIR----------WGTFCPVCRHE 197 (214)
Q Consensus 167 ~~l~C--~H~FH~~Ci~~Wl~~----------~~~~CP~Cr~~ 197 (214)
.-|.| +|-|- .|+.. .-.+||.|.+.
T Consensus 4 y~L~Cd~~HeFE-----GWF~ssaDfd~Q~~rgLv~CPvCgs~ 41 (142)
T COG5319 4 YALRCDKGHEFE-----GWFGSSADFDRQRERGLVTCPVCGST 41 (142)
T ss_pred eeeeccCCCccc-----ccccCchhHHHHHHcCceeCCCCCcH
Confidence 45678 67664 66632 22379999764
No 310
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=28.26 E-value=72 Score=23.99 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhc
Q 028085 95 VISIPLLFWFARKLY 109 (214)
Q Consensus 95 i~~~~~~~~~~~~~~ 109 (214)
.+.++.+.||.++++
T Consensus 170 ~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 170 TLGVLAIIFFLYKFC 184 (186)
T ss_pred HHHHHHHHHHHhhhc
Confidence 445566666666655
No 311
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=28.24 E-value=24 Score=22.32 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=16.1
Q ss_pred ChhhHHHHHHhCCCCcccccc
Q 028085 176 HSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 176 H~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
|.+|-+.|+.++--.|..|=.
T Consensus 3 C~~C~~~~F~~KiGRC~rCM~ 23 (77)
T PF12292_consen 3 CNDCQESWFWQKIGRCQRCMW 23 (77)
T ss_pred hhhHHHHHHHHHhccHHHHHH
Confidence 567999999886556998843
No 312
>PRK03732 hypothetical protein; Provisional
Probab=28.21 E-value=51 Score=22.66 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCcEEEEE
Q 028085 10 YKIQNAQAAGYDAAIVY 26 (214)
Q Consensus 10 ~K~~~a~~~ga~aviv~ 26 (214)
.=..+|++.||.|+|=-
T Consensus 71 rm~~~A~~lGAnAVVgv 87 (114)
T PRK03732 71 RMALHAKELGANAVVNF 87 (114)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 33567999999999943
No 313
>PLN02195 cellulose synthase A
Probab=28.17 E-value=87 Score=29.87 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCcccccccccccCCC--ceEE--ecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGE--NLRV--LPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~--~~~~--l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
+...|.||-++...+. ++.+ -.|+---|+.|.+==-+..+..||.|+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4457999999764331 3322 2377779999994322233447999998876
No 314
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.15 E-value=84 Score=19.15 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhc
Q 028085 95 VISIPLLFWFARKLY 109 (214)
Q Consensus 95 i~~~~~~~~~~~~~~ 109 (214)
++.+++.+|+.+++.
T Consensus 8 i~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 8 IVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455566666543
No 315
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.08 E-value=14 Score=29.62 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=26.2
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+.|+-|-+-+.+.+ |+.-.=.|+||-+|+. |-+|++.+.+.
T Consensus 93 TKCsaC~~GIpPtq-VVRkAqd~VYHl~CF~---------C~iC~R~L~TG 133 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQ-VVRKAQDFVYHLHCFA---------CFICKRQLATG 133 (383)
T ss_pred CcchhhcCCCChHH-HHHHhhcceeehhhhh---------hHhhhcccccC
Confidence 57888888777663 3333457888888862 66666655443
No 316
>PF12773 DZR: Double zinc ribbon
Probab=28.00 E-value=39 Score=18.92 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=5.8
Q ss_pred Ccccccccc
Q 028085 190 FCPVCRHEI 198 (214)
Q Consensus 190 ~CP~Cr~~i 198 (214)
.||.|.+.+
T Consensus 31 ~C~~Cg~~~ 39 (50)
T PF12773_consen 31 ICPNCGAEN 39 (50)
T ss_pred CCcCCcCCC
Confidence 477776654
No 317
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=27.99 E-value=58 Score=18.94 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=29.0
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 3 RGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 3 rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
+..|++-.+++.+.++-.......|...+.... .+. .....++|++++...
T Consensus 7 ~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~ 59 (72)
T cd02066 7 KSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGE 59 (72)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 356999999999876554455555544332211 111 112357888887543
No 318
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=27.96 E-value=16 Score=26.75 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.9
Q ss_pred Cccccccccccc
Q 028085 150 ETLCSICLEDYR 161 (214)
Q Consensus 150 ~~~C~ICl~~~~ 161 (214)
...|+.|-..+.
T Consensus 97 ~~RCp~CN~~L~ 108 (165)
T COG1656 97 FSRCPECNGELE 108 (165)
T ss_pred cccCcccCCEec
Confidence 456777776655
No 319
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=27.89 E-value=18 Score=33.35 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=32.2
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHH---HhCC--CCcccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWL---IRWG--TFCPVCRHEI 198 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl---~~~~--~~CP~Cr~~i 198 (214)
...|..|......- ..+.-.|+|.+|-+|+..|. .... ..|+.|+..-
T Consensus 229 ~~mC~~C~~tlfn~-hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFNI-HWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccce-eEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 35788998765522 33445599999999999995 1111 1588887654
No 320
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=27.84 E-value=69 Score=21.07 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=28.9
Q ss_pred cccccHHHHHHHHHH-cCCcEEEEEeCCCCCC---ee-eee-CCCCCeeeEEEEchh
Q 028085 3 RGQCNFSYKIQNAQA-AGYDAAIVYALRKKSP---LI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 3 rg~C~f~~K~~~a~~-~ga~aviv~~~~~~~~---~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
+..|+|-.+++...+ .|..-. ++|....+. .. .+. .....++|.+||...
T Consensus 15 k~~Cp~C~~ak~~L~~~~i~~~-~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~ 70 (99)
T TIGR02189 15 RSSCCMCHVVKRLLLTLGVNPA-VHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK 70 (99)
T ss_pred CCCCHHHHHHHHHHHHcCCCCE-EEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence 356999999999876 444322 344322211 11 111 123458999999876
No 321
>KOG1296 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=81 Score=22.66 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.0
Q ss_pred cccccHHHHHHHHHHcCCcEEE
Q 028085 3 RGQCNFSYKIQNAQAAGYDAAI 24 (214)
Q Consensus 3 rg~C~f~~K~~~a~~~ga~avi 24 (214)
||.|+|..|-+...+-|-.-++
T Consensus 58 Rgta~~v~KCK~C~Rensv~iv 79 (161)
T KOG1296|consen 58 RGTASFVMKCKFCSRENSVTIV 79 (161)
T ss_pred cchhhHhhhhhhhcccCcEEEe
Confidence 8899999999988887766555
No 322
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=27.30 E-value=49 Score=21.69 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=28.5
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+-|-..+.--|.+- +-.|+..+.. |..|++++..
T Consensus 34 S~C~~C~~~L~~~~lIP------------i~S~l~lrGr-Cr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIP------------ILSYLLLRGR-CRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccch------------HHHHHHhCCC-CcccCCCCCh
Confidence 57999999988665443 3589988776 9999998753
No 323
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.90 E-value=29 Score=27.80 Aligned_cols=31 Identities=39% Similarity=0.657 Sum_probs=23.2
Q ss_pred cccccccccccCCCceEEecCCCccChhhHH
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVD 181 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~ 181 (214)
..|.||+..-.+.+.+..=-|...||.-|+-
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccc
Confidence 4688999887776544444588889999974
No 324
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.87 E-value=92 Score=21.88 Aligned_cols=6 Identities=33% Similarity=0.938 Sum_probs=3.2
Q ss_pred CeeeEE
Q 028085 43 ANVPAF 48 (214)
Q Consensus 43 ~~Ip~v 48 (214)
.+||.+
T Consensus 37 ~~~~~i 42 (139)
T PHA03099 37 TDIPAI 42 (139)
T ss_pred cCCccc
Confidence 356654
No 325
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.84 E-value=57 Score=25.97 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=24.9
Q ss_pred cccccccccccCCCceEE-ecCCC-ccChhhHHHHHHhCCCCcc
Q 028085 151 TLCSICLEDYREGENLRV-LPCRH-EFHSSCVDSWLIRWGTFCP 192 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~-l~C~H-~FH~~Ci~~Wl~~~~~~CP 192 (214)
..|.||++.-..|-.-.- |-=.- .=|++|+++|=...+..||
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 467888877554421111 11111 2359999999877666799
No 326
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=26.74 E-value=65 Score=24.15 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEe
Q 028085 7 NFSYKIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~ 27 (214)
+=.++++-|++|||.||+.-.
T Consensus 22 ~n~eQAkIAE~AGA~AVMaLe 42 (208)
T PF01680_consen 22 TNAEQAKIAEEAGAVAVMALE 42 (208)
T ss_dssp SSHHHHHHHHHHT-SEEEE-S
T ss_pred cCHHHHHHHHHhCCeEEEEec
Confidence 446899999999999999765
No 327
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=26.68 E-value=38 Score=28.95 Aligned_cols=41 Identities=24% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHcCCcEEEEEeCCCCCCeeee----eCCCCCeeeEEEEchh
Q 028085 13 QNAQAAGYDAAIVYALRKKSPLIYM----TYPEGANVPAFYVTLE 53 (214)
Q Consensus 13 ~~a~~~ga~aviv~~~~~~~~~~~m----~~~~~~~Ip~v~v~~~ 53 (214)
+.|+..||.||||.-..-+++-+.. ...+...||+|.|+.+
T Consensus 297 ~la~~LgaDGaIvs~eG~GN~d~D~~~~~~~~e~~GIktV~it~e 341 (428)
T PF09338_consen 297 KLAEMLGADGAIVSEEGFGNPDVDFAMNIEEIEKRGIKTVGITDE 341 (428)
T ss_pred HHHHHhCCCEEEEEecCCCchhHHHHHHHHHHHHCCCCEEEecce
Confidence 4466789999999865433332211 1345678999999864
No 328
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.53 E-value=31 Score=19.13 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=9.8
Q ss_pred Ccccccccccccc
Q 028085 190 FCPVCRHEIRRST 202 (214)
Q Consensus 190 ~CP~Cr~~i~~~~ 202 (214)
.||.|...+....
T Consensus 23 ~Cp~CG~~~~~~~ 35 (46)
T PRK00398 23 RCPYCGYRILFKE 35 (46)
T ss_pred ECCCCCCeEEEcc
Confidence 5999988876554
No 329
>PRK00967 hypothetical protein; Provisional
Probab=26.48 E-value=57 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHcCCcEEEEEe
Q 028085 12 IQNAQAAGYDAAIVYA 27 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~ 27 (214)
..+|++.||.|+|=..
T Consensus 66 ~~~A~~~GAnAIIgvr 81 (105)
T PRK00967 66 KEEAKQKGANAIVGMR 81 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 4678999999999554
No 330
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=26.45 E-value=28 Score=18.80 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=8.6
Q ss_pred Cccccccccccc
Q 028085 190 FCPVCRHEIRRS 201 (214)
Q Consensus 190 ~CP~Cr~~i~~~ 201 (214)
.||.|+..+...
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 399998876543
No 331
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.39 E-value=1.6e+02 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=16.3
Q ss_pred EEchhhHHHHHHHhhcCCCceEEeccc
Q 028085 49 YVTLETGAYLKEHARGEAGECCIFPLS 75 (214)
Q Consensus 49 ~v~~~~g~~L~~~~~~~~~~~~~~p~~ 75 (214)
|+--..|.-+-.++.+...+|.|....
T Consensus 8 ~~ll~agi~~g~~~~~qqgyVlI~~~~ 34 (400)
T COG3071 8 FVLLLAGIGVGLAIAGQQGYVLIQTDN 34 (400)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecc
Confidence 334445666666666677777776554
No 332
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.02 E-value=84 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCCCeeeee-------CCCCCeeeEEEEchhh
Q 028085 8 FSYKIQNAQAAGYDAAIVYALRKKSPLIYMT-------YPEGANVPAFYVTLET 54 (214)
Q Consensus 8 f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~-------~~~~~~Ip~v~v~~~~ 54 (214)
|..-.++--+.-|-|++|||..+.++.-... .-.+.+|.++....+.
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChh
Confidence 3333444444556688999977654322222 1234578788777664
No 333
>PRK10638 glutaredoxin 3; Provisional
Probab=26.00 E-value=56 Score=20.46 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=28.8
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
-.|+|-.|++.+-+ .|..-.. .|...+.+.. .+. .....++|++++...
T Consensus 10 ~~Cp~C~~a~~~L~~~gi~y~~-~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~ 61 (83)
T PRK10638 10 ATCPFCHRAKALLNSKGVSFQE-IPIDGDAAKREEMIKRSGRTTVPQIFIDAQ 61 (83)
T ss_pred CCChhHHHHHHHHHHcCCCcEE-EECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 46999999999876 6655444 4433221111 111 223358999988765
No 334
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=25.85 E-value=20 Score=30.89 Aligned_cols=46 Identities=30% Similarity=0.671 Sum_probs=29.9
Q ss_pred Ccccccccccc-cCCCceEEec---CCCccChhhHHHHHHhCC-------CCccccccc
Q 028085 150 ETLCSICLEDY-REGENLRVLP---CRHEFHSSCVDSWLIRWG-------TFCPVCRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~-~~~~~~~~l~---C~H~FH~~Ci~~Wl~~~~-------~~CP~Cr~~ 197 (214)
+..|.+|..-- ...+ +++. |+--||..|-........ ..|-.|+..
T Consensus 168 n~qc~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 35699999443 3333 5554 678899999877554321 169999664
No 335
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=25.68 E-value=1e+02 Score=19.31 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCC
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
++..+.+.|.+.|+..+++....
T Consensus 42 ~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 42 KIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred CHhHHHHHHHhCCCCEEEEECCC
Confidence 67889999999999988888743
No 336
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.50 E-value=41 Score=21.48 Aligned_cols=32 Identities=31% Similarity=0.722 Sum_probs=21.6
Q ss_pred CCcccccccccccCCCceEEe--cCCCccChhhHHH
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHEFHSSCVDS 182 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~~ 182 (214)
....|.+|-.. .|..+.-- .|.-.||..|...
T Consensus 35 ~~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 34589999977 34333222 3888999999754
No 337
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=25.48 E-value=1.2e+02 Score=21.40 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 028085 83 EKIIVWGMLLLFVI 96 (214)
Q Consensus 83 ~~i~~~~~l~~~i~ 96 (214)
..|++++++++.+.
T Consensus 8 ~fI~~W~~vli~l~ 21 (141)
T PF11084_consen 8 WFILFWVVVLIGLM 21 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 45667776664333
No 338
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=25.47 E-value=35 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=10.7
Q ss_pred cChhhHHHHH--HhCCCCccc
Q 028085 175 FHSSCVDSWL--IRWGTFCPV 193 (214)
Q Consensus 175 FH~~Ci~~Wl--~~~~~~CP~ 193 (214)
-..+-+..|| ..+.. +|.
T Consensus 124 ~~G~~~R~~L~~Lr~~~-~p~ 143 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSS-TPL 143 (186)
T ss_pred cccccHHHHHHHHHhcc-CCc
Confidence 3457788888 44343 553
No 339
>PTZ00370 STEVOR; Provisional
Probab=25.46 E-value=86 Score=25.31 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.3
Q ss_pred HHHHHHHhc
Q 028085 101 LFWFARKLY 109 (214)
Q Consensus 101 ~~~~~~~~~ 109 (214)
++.+++.++
T Consensus 272 iilYiwlyr 280 (296)
T PTZ00370 272 IILYIWLYR 280 (296)
T ss_pred HHHHHHHHH
Confidence 333333333
No 340
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.44 E-value=37 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=27.0
Q ss_pred ccccccccccc-CCCceEEecCCCccChhhHHHHHHhCCCCcccc
Q 028085 151 TLCSICLEDYR-EGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 151 ~~C~ICl~~~~-~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
..|.+|-..-. +.+..+.+.|+-.||..| |+...+. ||.|
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~-~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASI-SEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhcc-Cccc
Confidence 36888875533 334556677999888887 4445455 9999
No 341
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=25.41 E-value=2.4e+02 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 028085 92 LLFVISIPLLFWFARKLYP 110 (214)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~ 110 (214)
++++.+++++.|+.+|+..
T Consensus 26 ~lVl~lI~~~aWLlkR~~~ 44 (124)
T PRK11486 26 IGIIALILAAAWLVKRLGF 44 (124)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3445566677788888754
No 342
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=25.23 E-value=37 Score=20.31 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=15.5
Q ss_pred cccccccccCCCceEEecCCCccChh
Q 028085 153 CSICLEDYREGENLRVLPCRHEFHSS 178 (214)
Q Consensus 153 C~ICl~~~~~~~~~~~l~C~H~FH~~ 178 (214)
|..|... .++...-|.|||+++..
T Consensus 1 C~~C~~~--~~~lw~CL~Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST--NSNLWLCLTCGYVGCGR 24 (63)
T ss_dssp -SSSHTC--SSSEEEETTTS-EEETT
T ss_pred CCCCCCc--CCceEEeCCCCcccccC
Confidence 5566655 34466778899999875
No 343
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.79 E-value=15 Score=25.82 Aligned_cols=48 Identities=23% Similarity=0.612 Sum_probs=22.9
Q ss_pred CCccccccccc-ccCCCceEEecCCCccChhhHHHHHHh-CCC--Ccccccc
Q 028085 149 RETLCSICLED-YREGENLRVLPCRHEFHSSCVDSWLIR-WGT--FCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~-~~~~~~~~~l~C~H~FH~~Ci~~Wl~~-~~~--~CP~Cr~ 196 (214)
++..|-||+-. |.+|---....|.--||..|--..-.+ ++. .|-+|+.
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 56789999854 554411111123333444443332222 222 5888865
No 344
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=24.55 E-value=83 Score=24.08 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=20.0
Q ss_pred ceEEecCCCccChhhHHHHHHhCC-CCcccccccccc
Q 028085 165 NLRVLPCRHEFHSSCVDSWLIRWG-TFCPVCRHEIRR 200 (214)
Q Consensus 165 ~~~~l~C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~ 200 (214)
..+.+.|++.+..+=+...+.... ..||.|...+..
T Consensus 109 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP 145 (218)
T cd01407 109 RVRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRP 145 (218)
T ss_pred cceeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCC
Confidence 445567888776542222222222 369999876543
No 345
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=24.42 E-value=39 Score=30.01 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=23.4
Q ss_pred CCcccccccccccCC-----------CceEEecCCCccChhhHHHHH
Q 028085 149 RETLCSICLEDYREG-----------ENLRVLPCRHEFHSSCVDSWL 184 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~-----------~~~~~l~C~H~FH~~Ci~~Wl 184 (214)
....|+||-|.|+.- |.+. +.=|-+||..|+..--
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVY-LEFGRIFHSKCLSEKR 557 (579)
T ss_pred cccCCcccccccceeecchhhheeecceee-eccCceeeccccchHH
Confidence 445899999997621 1222 2247899999997644
No 346
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=65 Score=21.88 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCcEEEEEe
Q 028085 10 YKIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 10 ~K~~~a~~~ga~aviv~~ 27 (214)
.=+.+|++.||.|||=..
T Consensus 64 rm~~~A~~lGAnAVVgvr 81 (108)
T COG0393 64 RMVDEAEALGANAVVGVR 81 (108)
T ss_pred HHHHHHHHhCCCeEEEEE
Confidence 345678999999999543
No 347
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=24.20 E-value=2e+02 Score=22.69 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 028085 93 LFVISIPLLFWFARKLYPI 111 (214)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~ 111 (214)
+++.++.++++++.++|..
T Consensus 44 I~~~V~~~~~~~~~k~R~~ 62 (247)
T COG1622 44 IVLPVIVLLVYFAWKYRAS 62 (247)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 3345556666666666653
No 348
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=23.86 E-value=1.7e+02 Score=19.06 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHHH-cCCcEEEEEeCCCC-CCeeeeeCCCCCeeeEEEEch---hhHHHHHHHhh
Q 028085 3 RGQCNFSYKIQNAQA-AGYDAAIVYALRKK-SPLIYMTYPEGANVPAFYVTL---ETGAYLKEHAR 63 (214)
Q Consensus 3 rg~C~f~~K~~~a~~-~ga~aviv~~~~~~-~~~~~m~~~~~~~Ip~v~v~~---~~g~~L~~~~~ 63 (214)
.|.|+|..|++.|.. .|..--++.-+... ++.+.--++. -.+|++.-.. .+...+.+++.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHH
Confidence 488999999999885 77776666543322 2221111333 3688664321 13344555553
No 349
>PF14979 TMEM52: Transmembrane 52
Probab=23.84 E-value=2.7e+02 Score=20.06 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.0
Q ss_pred cchhHHH
Q 028085 78 WNKHVEK 84 (214)
Q Consensus 78 ~~~~~~~ 84 (214)
|-+.++.
T Consensus 20 WyIwLil 26 (154)
T PF14979_consen 20 WYIWLIL 26 (154)
T ss_pred hHHHHHH
Confidence 4443443
No 350
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.81 E-value=22 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=13.8
Q ss_pred EecCCCccChhhHHHHHHhCCCCcccccc
Q 028085 168 VLPCRHEFHSSCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 168 ~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
-..|||.|-..--.. ......||.|.+
T Consensus 8 C~~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (52)
T TIGR02605 8 CTACGHRFEVLQKMS--DDPLATCPECGG 34 (52)
T ss_pred eCCCCCEeEEEEecC--CCCCCCCCCCCC
Confidence 344777665321100 111235999987
No 351
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.79 E-value=74 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.4
Q ss_pred HHHHHHcCCcEEEEEeCC
Q 028085 12 IQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~~~ 29 (214)
+..|-+.||+||+|.--.
T Consensus 45 il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 45 ILRAFEKGADGVLVAGCH 62 (124)
T ss_pred HHHHHHcCCCEEEEeCCC
Confidence 567889999999996544
No 352
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.72 E-value=2e+02 Score=18.12 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.4
Q ss_pred CCCCHH
Q 028085 123 RQLPRS 128 (214)
Q Consensus 123 ~~~~~~ 128 (214)
.++..+
T Consensus 34 ~gLs~~ 39 (75)
T PF06667_consen 34 QGLSEE 39 (75)
T ss_pred CCCCHH
Confidence 334433
No 353
>PRK10824 glutaredoxin-4; Provisional
Probab=23.53 E-value=49 Score=22.73 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 5 QCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 5 ~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
.|+|..+++...+ .|..-- .+|..++..+. .|. ....-++|.|||.+.
T Consensus 29 ~Cpyc~~ak~lL~~~~i~~~-~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 29 SCGFSAQAVQALSACGERFA-YVDILQNPDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred CCchHHHHHHHHHHcCCCce-EEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 7999999999874 554432 23433221111 111 223358999999887
No 354
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.34 E-value=78 Score=22.01 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHHHHcCCcEEEEEeCCCCCCeee----------ee---------CCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 12 IQNAQAAGYDAAIVYALRKKSPLIY----------MT---------YPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~~~~~~~~~~----------m~---------~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
+..|.+.||+||+|.-=.-+ +... |. ..++-.+-.+.||.+.|+...+.++
T Consensus 46 vl~Al~~GaDGV~v~GC~~g-eCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~ 115 (132)
T COG1908 46 VLKALRKGADGVLVAGCKIG-ECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETIN 115 (132)
T ss_pred HHHHHHcCCCeEEEeccccc-ceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHH
Confidence 56688999999998752211 1111 00 2234456677777777777665543
No 355
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=23.19 E-value=77 Score=23.28 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=23.1
Q ss_pred ceEEecCCCccChhhHHHHHHhCC-CCcccccccccc
Q 028085 165 NLRVLPCRHEFHSSCVDSWLIRWG-TFCPVCRHEIRR 200 (214)
Q Consensus 165 ~~~~l~C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~ 200 (214)
..+.+.|++.+...-+........ ..||.|...+..
T Consensus 105 ~~~C~~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp 141 (178)
T PF02146_consen 105 RLRCSKCGKEYDREDIVDSIDEEEPPRCPKCGGLLRP 141 (178)
T ss_dssp EEEETTTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEE
T ss_pred eeeecCCCccccchhhcccccccccccccccCccCCC
Confidence 445666888877665555544432 369999886654
No 356
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=23.11 E-value=2.6e+02 Score=19.37 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=3.0
Q ss_pred cchhHHHH
Q 028085 78 WNKHVEKI 85 (214)
Q Consensus 78 ~~~~~~~i 85 (214)
|...++-+
T Consensus 31 i~~~~VRl 38 (118)
T PRK10697 31 VPVKLVRI 38 (118)
T ss_pred CCHHHHHH
Confidence 33333333
No 357
>PRK02877 hypothetical protein; Provisional
Probab=23.08 E-value=97 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHHHcCCcEEEEEe
Q 028085 11 KIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 11 K~~~a~~~ga~aviv~~ 27 (214)
=..+|++.||.|||=.+
T Consensus 65 m~~~A~~lGAnAVIgvr 81 (106)
T PRK02877 65 LGEQARALGADAVVGID 81 (106)
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 35679999999999643
No 358
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.95 E-value=1.2e+02 Score=20.70 Aligned_cols=23 Identities=4% Similarity=0.119 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCC
Q 028085 7 NFSYKIQNAQAAGYDAAIVYALR 29 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~~~~ 29 (214)
++..|.+.|.+.||..+|+....
T Consensus 65 sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 65 SIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred CHHHHHHHhHhcCCCEEEEECcC
Confidence 67889999999999988887643
No 359
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=22.86 E-value=1.3e+02 Score=19.95 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=8.1
Q ss_pred cccchhHHHHHHHHHHH
Q 028085 76 YAWNKHVEKIIVWGMLL 92 (214)
Q Consensus 76 ~~~~~~~~~i~~~~~l~ 92 (214)
..|.+++-+|.+.+.++
T Consensus 12 FEwFLF~~AIFiAItIl 28 (117)
T PF07234_consen 12 FEWFLFFGAIFIAITIL 28 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666555544433333
No 360
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.84 E-value=1e+02 Score=19.37 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.0
Q ss_pred CCCHHHH
Q 028085 124 QLPRSTV 130 (214)
Q Consensus 124 ~~~~~~~ 130 (214)
++..+..
T Consensus 35 ~Ls~~d~ 41 (75)
T PRK09458 35 GLSQEEQ 41 (75)
T ss_pred CCCHHHH
Confidence 4444443
No 361
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.57 E-value=25 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred eEEecCCCccChhhHHHHHHhCC--CCcccccccc
Q 028085 166 LRVLPCRHEFHSSCVDSWLIRWG--TFCPVCRHEI 198 (214)
Q Consensus 166 ~~~l~C~H~FH~~Ci~~Wl~~~~--~~CP~Cr~~i 198 (214)
...|-|.|.||..=+-..-+... ..||.|+.-.
T Consensus 190 ~~alIC~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 190 FKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred hhhhccccccccccccccccccchheecccchhhc
Confidence 34566888888765544333221 2699998866
No 362
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=22.49 E-value=55 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.7
Q ss_pred ceEEecCCCccCh
Q 028085 165 NLRVLPCRHEFHS 177 (214)
Q Consensus 165 ~~~~l~C~H~FH~ 177 (214)
++.+-.|||.|+.
T Consensus 23 k~vkc~CGh~f~d 35 (112)
T PF08882_consen 23 KVVKCDCGHEFCD 35 (112)
T ss_pred ceeeccCCCeecC
Confidence 3556679999984
No 363
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.43 E-value=1.8e+02 Score=17.23 Aligned_cols=15 Identities=0% Similarity=-0.179 Sum_probs=6.3
Q ss_pred CCceEEeccccccch
Q 028085 66 AGECCIFPLSYAWNK 80 (214)
Q Consensus 66 ~~~~~~~p~~~~~~~ 80 (214)
.+.+.+.+....++.
T Consensus 6 ~V~v~~~~~~~~~pl 20 (68)
T PF06305_consen 6 PVTVNFLFGQFPLPL 20 (68)
T ss_pred eEEEEEEeeeccchH
Confidence 344444444333444
No 364
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.38 E-value=46 Score=22.45 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=9.7
Q ss_pred cccccccccccCCC
Q 028085 151 TLCSICLEDYREGE 164 (214)
Q Consensus 151 ~~C~ICl~~~~~~~ 164 (214)
.-|+.|-++|.-.|
T Consensus 4 p~cp~c~sEytYed 17 (112)
T COG2824 4 PPCPKCNSEYTYED 17 (112)
T ss_pred CCCCccCCceEEec
Confidence 35899988876443
No 365
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.18 E-value=1.5e+02 Score=17.71 Aligned_cols=11 Identities=0% Similarity=0.006 Sum_probs=4.7
Q ss_pred EchhhHHHHHH
Q 028085 50 VTLETGAYLKE 60 (214)
Q Consensus 50 v~~~~g~~L~~ 60 (214)
-+.+.++...+
T Consensus 20 CS~~C~~~~~k 30 (59)
T PF09889_consen 20 CSPKCREEYRK 30 (59)
T ss_pred hCHHHHHHHHH
Confidence 34444444443
No 366
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=22.02 E-value=43 Score=25.06 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q 028085 190 FCPVCRHEIRRST 202 (214)
Q Consensus 190 ~CP~Cr~~i~~~~ 202 (214)
-||+|++.++-.+
T Consensus 171 ~c~~~~~~~~~~~ 183 (187)
T TIGR01367 171 ECPLCLAGIPAEK 183 (187)
T ss_pred cCChhhcCCCCcC
Confidence 4999999876554
No 367
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.02 E-value=63 Score=26.22 Aligned_cols=7 Identities=0% Similarity=0.358 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 028085 101 LFWFARK 107 (214)
Q Consensus 101 ~~~~~~~ 107 (214)
+.|++.|
T Consensus 290 iaYli~R 296 (306)
T PF01299_consen 290 IAYLIGR 296 (306)
T ss_pred HhheeEe
Confidence 3344333
No 368
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=21.74 E-value=23 Score=29.13 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEE---chhhHHHHHH
Q 028085 9 SYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYV---TLETGAYLKE 60 (214)
Q Consensus 9 ~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v---~~~~g~~L~~ 60 (214)
.+.++..++|||.++++--.++. +. -.-.+.+.||++.| .+.||+.|.-
T Consensus 185 i~dA~ale~AGAf~ivLE~Vp~~--la-~~It~~l~IPtIGIGAG~~cDGQVLV~ 236 (332)
T PLN02424 185 VETALALQEAGCFAVVLECVPAP--VA-AAITSALQIPTIGIGAGPFCSGQVLVY 236 (332)
T ss_pred HHHHHHHHHcCCcEEEEcCCcHH--HH-HHHHHhCCCCEEeecCCCCCCceeEeH
Confidence 35677788999999986543321 11 11235678999999 5668886643
No 369
>PLN02248 cellulose synthase-like protein
Probab=21.70 E-value=71 Score=30.89 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=25.8
Q ss_pred Eec--CCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 168 VLP--CRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 168 ~l~--C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.+| |++-.|++|...-+..... ||-|+.+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 178 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGI-CPGCKEPYKV 178 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCC-CCCCcccccc
Confidence 455 7889999999998877555 9999998743
No 370
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=21.69 E-value=1.5e+02 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHHHHHcCCcEEEEEeCCC-CCCeeeee--------------CCCCCeeeEEEEchhhHHH
Q 028085 12 IQNAQAAGYDAAIVYALRK-KSPLIYMT--------------YPEGANVPAFYVTLETGAY 57 (214)
Q Consensus 12 ~~~a~~~ga~aviv~~~~~-~~~~~~m~--------------~~~~~~Ip~v~v~~~~g~~ 57 (214)
+..|.++||+++|+-...+ +-+.+.-. ......+|++.|+.+.|+.
T Consensus 62 i~~A~~~GA~~~v~~~~~~~~~~~i~V~d~~~al~~la~~~~~~p~~~~~vIgITGTnGKT 122 (481)
T PRK14022 62 LQNAITQGLKLYVSEKDYEVGIPQVIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKT 122 (481)
T ss_pred HHHHHHCCCeEEEEecccCCCCcEEEECCHHHHHHHHHHHHhcChhhccEEEEEeCCCcHH
Confidence 4578899999999753211 11222211 1122578999999999984
No 371
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=21.67 E-value=62 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=27.5
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEeCCCCCCee-eee-CCCCCeeeEEEEchh
Q 028085 4 GQCNFSYKIQNAQA-AGYDAAIVYALRKKSPLI-YMT-YPEGANVPAFYVTLE 53 (214)
Q Consensus 4 g~C~f~~K~~~a~~-~ga~aviv~~~~~~~~~~-~m~-~~~~~~Ip~v~v~~~ 53 (214)
-+|++-.++++.-+ .|.. .-..|...+++.. .+. .....++|+++|...
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~-~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~ 58 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVT-FTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV 58 (79)
T ss_pred CCChhHHHHHHHHHHcCCC-cEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 46999999999765 4443 3333433221111 111 122468899998865
No 372
>PLN02417 dihydrodipicolinate synthase
Probab=21.62 E-value=86 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCcEEEEEe
Q 028085 10 YKIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 10 ~K~~~a~~~ga~aviv~~ 27 (214)
+.++.|+++||+|+++..
T Consensus 87 ~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 87 HATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHcCCCEEEEcC
Confidence 567788999999999875
No 373
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=21.56 E-value=46 Score=24.54 Aligned_cols=30 Identities=23% Similarity=0.699 Sum_probs=16.9
Q ss_pred ccccc---ccccCCCceEEecCCCccChhhHHH
Q 028085 153 CSICL---EDYREGENLRVLPCRHEFHSSCVDS 182 (214)
Q Consensus 153 C~ICl---~~~~~~~~~~~l~C~H~FH~~Ci~~ 182 (214)
|..|. ++...|.-|.---|.-.||+.||-.
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~ 34 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGP 34 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCC
Confidence 56664 4455553223333777788888744
No 374
>PRK11595 DNA utilization protein GntX; Provisional
Probab=21.46 E-value=60 Score=25.05 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=17.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
.|.+|-..+..+. +..|..|...|-.... .||.|-.++
T Consensus 7 ~C~~C~~~~~~~~--------~~lC~~C~~~l~~~~~-~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALSH--------WGICSVCSRALRTLKT-CCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCCC--------CcccHHHHhhCCcccC-cCccCCCcC
Confidence 4777765543221 1245555555422212 366665443
No 375
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.26 E-value=98 Score=18.77 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028085 85 IIVWGMLLLFVISIPLLFWFARK 107 (214)
Q Consensus 85 i~~~~~l~~~i~~~~~~~~~~~~ 107 (214)
+.+..++++|++.-.+++.++++
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhh
Confidence 34444454444444444444443
No 376
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=21.23 E-value=47 Score=26.51 Aligned_cols=49 Identities=24% Similarity=0.593 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCc------eEEec-----CCCccChhhHHHHHHhCCC---------Cccccccccccc
Q 028085 149 RETLCSICLEDYREGEN------LRVLP-----CRHEFHSSCVDSWLIRWGT---------FCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~------~~~l~-----C~H~FH~~Ci~~Wl~~~~~---------~CP~Cr~~i~~~ 201 (214)
....|.+|=-.|..=-. .-.|| ||-.|+ .+||.+... .||.|++.+-..
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFS----RPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFS----RPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCccccccccccc----chHHhhcccccccCCCCccCCcccchhcch
Confidence 34578898877652200 01245 455555 589986531 699998876543
No 377
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=41 Score=20.01 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=15.2
Q ss_pred CCceEEec--CCCccChhhHHHHHHhCCC-Cccccccc
Q 028085 163 GENLRVLP--CRHEFHSSCVDSWLIRWGT-FCPVCRHE 197 (214)
Q Consensus 163 ~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~ 197 (214)
+++....| ||..|--.-=+. ...... .||.|---
T Consensus 17 e~~~ftyPCPCGDRFeIsLeDl-~~GE~VArCPSCSLi 53 (67)
T COG5216 17 EEKTFTYPCPCGDRFEISLEDL-RNGEVVARCPSCSLI 53 (67)
T ss_pred CCceEEecCCCCCEeEEEHHHh-hCCceEEEcCCceEE
Confidence 33444444 677665432222 111111 58887543
No 378
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.11 E-value=85 Score=25.06 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHcCCcEEEEE
Q 028085 7 NFSYKIQNAQAAGYDAAIVY 26 (214)
Q Consensus 7 ~f~~K~~~a~~~ga~aviv~ 26 (214)
.|-..++-|.++||+|||=.
T Consensus 244 lF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 244 LFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred HhHHHHHHHHHcCCceeEec
Confidence 48888999999999999944
No 379
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=1.9e+02 Score=17.77 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.9
Q ss_pred ccc--cHHHHHHHHHH--cCCcEEEEEeCC
Q 028085 4 GQC--NFSYKIQNAQA--AGYDAAIVYALR 29 (214)
Q Consensus 4 g~C--~f~~K~~~a~~--~ga~aviv~~~~ 29 (214)
|+| |..+|+..+.. .-..||||++..
T Consensus 29 G~~E~sL~qkv~~~r~qlq~GeaVivwsel 58 (72)
T COG3089 29 GEHERSLEQKVADVRRQLQSGEAVIVWSEL 58 (72)
T ss_pred ccccccHHHHHHHHHHHHhcCceEEEecch
Confidence 444 67777776654 334599999854
No 380
>PRK12855 hypothetical protein; Provisional
Probab=21.00 E-value=1.1e+02 Score=20.50 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=13.6
Q ss_pred HHHHHHHcCCcEEEEEe
Q 028085 11 KIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 11 K~~~a~~~ga~aviv~~ 27 (214)
=..+|++.||.|||=.+
T Consensus 65 m~~~A~~lGAnAVVgvr 81 (103)
T PRK12855 65 MKTLARQKNANAIVGID 81 (103)
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 35679999999999554
No 381
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=21.00 E-value=36 Score=17.68 Aligned_cols=11 Identities=27% Similarity=0.772 Sum_probs=7.3
Q ss_pred Ccccccccccc
Q 028085 190 FCPVCRHEIRR 200 (214)
Q Consensus 190 ~CP~Cr~~i~~ 200 (214)
.||.|.+++..
T Consensus 6 ~C~nC~R~v~a 16 (33)
T PF08209_consen 6 ECPNCGRPVAA 16 (33)
T ss_dssp E-TTTSSEEEG
T ss_pred ECCCCcCCcch
Confidence 59999887754
No 382
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.99 E-value=3.9e+02 Score=22.48 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=6.8
Q ss_pred HHhhcCCCceEEe
Q 028085 60 EHARGEAGECCIF 72 (214)
Q Consensus 60 ~~~~~~~~~~~~~ 72 (214)
..+...+.+|.|.
T Consensus 19 ~~~~~~~Gyv~i~ 31 (398)
T PRK10747 19 PMIAGHQGYVLIQ 31 (398)
T ss_pred HHHcCCCCeEEEE
Confidence 3444455566555
No 383
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.97 E-value=96 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=13.9
Q ss_pred CcccccccccccCCCceEEecC
Q 028085 150 ETLCSICLEDYREGENLRVLPC 171 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C 171 (214)
+.-|++|-+... |-..-.|.|
T Consensus 15 ~ElCPVCGDkVS-GYHYGLLTC 35 (475)
T KOG4218|consen 15 GELCPVCGDKVS-GYHYGLLTC 35 (475)
T ss_pred ccccccccCccc-cceeeeeeh
Confidence 457999988855 335556665
No 384
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.65 E-value=27 Score=27.78 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEE---chhhHHHHHH
Q 028085 10 YKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYV---TLETGAYLKE 60 (214)
Q Consensus 10 ~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v---~~~~g~~L~~ 60 (214)
+.++..++|||.++++--.++ ++. -.-.+.+.||++.| ...||+.|--
T Consensus 164 ~~A~a~e~AGA~~ivlE~vp~--~~a-~~It~~l~iP~iGIGaG~~~dGQvlV~ 214 (263)
T TIGR00222 164 EDALALEEAGAQLLVLECVPV--ELA-AKITEALAIPVIGIGAGNVCDGQILVM 214 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCcH--HHH-HHHHHhCCCCEEeeccCCCCCceeeeH
Confidence 457778899999998544331 111 01235678999999 5667886643
No 385
>PLN02400 cellulose synthase
Probab=20.45 E-value=97 Score=29.94 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=33.1
Q ss_pred CcccccccccccCCC--ceEEe--cCCCccChhhHHHHHHhC-CCCcccccccccccc
Q 028085 150 ETLCSICLEDYREGE--NLRVL--PCRHEFHSSCVDSWLIRW-GTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~--~~~~l--~C~H~FH~~Ci~~Wl~~~-~~~CP~Cr~~i~~~~ 202 (214)
...|-||-++..... ++.+- .|+---|+.|.+ +-.+. +..||-||....+-+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCcccccc
Confidence 358999999964321 33322 366668999984 33222 336999998776443
No 386
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.44 E-value=73 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=21.1
Q ss_pred cccccccccccC-CCceEEec---CCCccChhhHHH
Q 028085 151 TLCSICLEDYRE-GENLRVLP---CRHEFHSSCVDS 182 (214)
Q Consensus 151 ~~C~ICl~~~~~-~~~~~~l~---C~H~FH~~Ci~~ 182 (214)
=.|.||.. |-. .+....+. |||.-|.+|--+
T Consensus 129 C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 129 CMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCccccCC-cccCCCCeeEEeccCCCceehhhhhcc
Confidence 36888954 432 24555554 799999999755
No 387
>PF15616 TerY-C: TerY-C metal binding domain
Probab=20.40 E-value=78 Score=22.33 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
...||-|-..+. - ..-.||++||.+= ....+||-|.+...-..
T Consensus 77 ~PgCP~CGn~~~---f-a~C~CGkl~Ci~g------~~~~~CPwCg~~g~~~~ 119 (131)
T PF15616_consen 77 APGCPHCGNQYA---F-AVCGCGKLFCIDG------EGEVTCPWCGNEGSFGA 119 (131)
T ss_pred CCCCCCCcChhc---E-EEecCCCEEEeCC------CCCEECCCCCCeeeecc
Confidence 367999998865 2 2336999887432 22346999988775544
No 388
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.36 E-value=36 Score=16.25 Aligned_cols=10 Identities=30% Similarity=1.065 Sum_probs=6.4
Q ss_pred Cccccccccc
Q 028085 190 FCPVCRHEIR 199 (214)
Q Consensus 190 ~CP~Cr~~i~ 199 (214)
.||.|.+.+.
T Consensus 4 ~C~~CgR~F~ 13 (25)
T PF13913_consen 4 PCPICGRKFN 13 (25)
T ss_pred cCCCCCCEEC
Confidence 3788866553
No 389
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=20.34 E-value=95 Score=25.43 Aligned_cols=44 Identities=7% Similarity=-0.143 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
...+|..|-+.... -...+|+|. |+-+|... .-..+||.|.+..
T Consensus 342 s~~~~~~~~~~~~s---t~~~~~~~n~~~~~~a~~---s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSGGNMNLSPGSLASA---SASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEeecCCcccChhhhhhc---ccCCccccccccc
Confidence 34689998888763 367789995 99999872 2233699997654
No 390
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=20.14 E-value=87 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHcCCcEEEEE
Q 028085 12 IQNAQAAGYDAAIVY 26 (214)
Q Consensus 12 ~~~a~~~ga~aviv~ 26 (214)
.+.|.+.||.|||=.
T Consensus 66 ~~~A~~~GAnAVIgv 80 (105)
T PF01906_consen 66 KEEAKELGANAVIGV 80 (105)
T ss_dssp HHHHHHTT-SEEEEE
T ss_pred HHHHhhCCCCEEEEE
Confidence 456889999999944
No 391
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.08 E-value=49 Score=17.15 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=5.5
Q ss_pred Cccccccc
Q 028085 190 FCPVCRHE 197 (214)
Q Consensus 190 ~CP~Cr~~ 197 (214)
.||+|.++
T Consensus 20 ~CP~Cg~~ 27 (34)
T cd00729 20 KCPICGAP 27 (34)
T ss_pred cCcCCCCc
Confidence 48888653
Done!