Query 028085
Match_columns 214
No_of_seqs 217 out of 2282
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 7.9E-20 2.7E-24 120.7 7.4 79 119-200 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 5.1E-20 1.7E-24 117.4 3.4 70 129-202 5-74 (75)
3 2kiz_A E3 ubiquitin-protein li 99.7 4.4E-18 1.5E-22 106.5 5.9 53 149-202 13-65 (69)
4 2ep4_A Ring finger protein 24; 99.7 7E-18 2.4E-22 107.1 5.9 54 149-203 14-67 (74)
5 2ect_A Ring finger protein 126 99.7 6.9E-18 2.3E-22 108.2 5.4 56 149-205 14-69 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.7 3E-18 1E-22 102.4 3.4 50 149-199 4-54 (55)
7 3icu_A E3 ubiquitin-protein li 99.7 4.1E-17 1.4E-21 120.8 8.3 74 1-74 110-186 (194)
8 2ecl_A Ring-box protein 2; RNF 99.7 1.4E-17 4.8E-22 107.4 3.6 52 149-201 14-77 (81)
9 1v87_A Deltex protein 2; ring- 99.7 7.7E-17 2.6E-21 110.8 5.8 60 149-208 24-102 (114)
10 2ecm_A Ring finger and CHY zin 99.7 7.8E-17 2.7E-21 96.2 4.5 50 149-199 4-54 (55)
11 3dpl_R Ring-box protein 1; ubi 99.6 1.2E-16 4.2E-21 107.7 3.4 50 149-199 36-100 (106)
12 3ng2_A RNF4, snurf, ring finge 99.6 1.9E-16 6.5E-21 99.6 3.4 53 149-202 9-65 (71)
13 2ea6_A Ring finger protein 4; 99.6 3.2E-16 1.1E-20 97.9 4.2 51 149-200 14-68 (69)
14 2d8s_A Cellular modulator of i 99.6 6.1E-16 2.1E-20 98.9 5.4 57 149-206 14-76 (80)
15 2xeu_A Ring finger protein 4; 99.6 3.1E-16 1.1E-20 96.5 3.0 52 149-201 2-57 (64)
16 2d8t_A Dactylidin, ring finger 99.6 6.2E-16 2.1E-20 97.2 2.4 50 149-202 14-63 (71)
17 1chc_A Equine herpes virus-1 r 99.6 2.1E-15 7.2E-20 93.9 4.7 50 149-201 4-53 (68)
18 2djb_A Polycomb group ring fin 99.6 3.4E-15 1.2E-19 94.0 5.7 50 149-202 14-64 (72)
19 2ecn_A Ring finger protein 141 99.6 1.4E-15 4.8E-20 95.3 3.1 49 149-202 14-62 (70)
20 2ct2_A Tripartite motif protei 99.6 4.8E-15 1.7E-19 97.0 5.7 53 149-201 14-69 (88)
21 4a0k_B E3 ubiquitin-protein li 99.5 4.5E-16 1.5E-20 106.3 -0.1 50 149-199 47-111 (117)
22 2ecy_A TNF receptor-associated 99.5 4.3E-15 1.5E-19 91.9 3.7 50 149-201 14-63 (66)
23 2yur_A Retinoblastoma-binding 99.5 9.7E-15 3.3E-19 92.4 5.3 51 149-202 14-66 (74)
24 2csy_A Zinc finger protein 183 99.5 8.3E-15 2.8E-19 94.4 4.9 47 149-199 14-60 (81)
25 2ysl_A Tripartite motif-contai 99.5 9.6E-15 3.3E-19 92.2 4.2 50 149-201 19-70 (73)
26 1g25_A CDK-activating kinase a 99.5 1.1E-14 3.9E-19 89.7 3.7 52 150-201 3-56 (65)
27 3lrq_A E3 ubiquitin-protein li 99.5 1.4E-14 4.9E-19 97.0 3.7 50 149-201 21-71 (100)
28 4ayc_A E3 ubiquitin-protein li 99.5 9.2E-15 3.2E-19 103.7 2.7 48 150-201 53-100 (138)
29 1t1h_A Gspef-atpub14, armadill 99.5 2.4E-14 8.3E-19 91.5 3.5 50 149-201 7-56 (78)
30 2ysj_A Tripartite motif-contai 99.5 7.1E-14 2.4E-18 85.5 5.2 43 149-194 19-63 (63)
31 3fl2_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 99.1 4.0 51 149-202 51-101 (124)
32 3ztg_A E3 ubiquitin-protein li 99.4 8E-14 2.7E-18 91.9 4.2 50 149-201 12-63 (92)
33 2ecw_A Tripartite motif-contai 99.4 1.5E-13 5.2E-18 89.1 5.4 50 149-201 18-72 (85)
34 4ap4_A E3 ubiquitin ligase RNF 99.4 4.7E-14 1.6E-18 99.3 2.9 53 149-202 6-62 (133)
35 2ecv_A Tripartite motif-contai 99.4 1.3E-13 4.4E-18 89.4 4.6 50 149-201 18-72 (85)
36 2ct0_A Non-SMC element 1 homol 99.4 1.2E-13 4.1E-18 86.4 4.1 52 149-202 14-66 (74)
37 2ecj_A Tripartite motif-contai 99.4 1.1E-13 3.7E-18 83.2 3.3 43 149-194 14-58 (58)
38 2egp_A Tripartite motif-contai 99.4 3.1E-14 1.1E-18 91.2 0.7 50 149-201 11-66 (79)
39 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.6E-18 92.1 3.4 49 149-201 21-70 (99)
40 1z6u_A NP95-like ring finger p 99.4 1.9E-13 6.6E-18 98.1 3.8 49 150-201 78-126 (150)
41 2ckl_A Polycomb group ring fin 99.4 2E-13 6.8E-18 92.7 3.6 49 149-201 14-63 (108)
42 1rmd_A RAG1; V(D)J recombinati 99.4 3.1E-13 1.1E-17 93.0 3.9 53 150-205 23-75 (116)
43 4ap4_A E3 ubiquitin ligase RNF 99.4 2.5E-13 8.6E-18 95.5 3.4 53 149-202 71-127 (133)
44 2ckl_B Ubiquitin ligase protei 99.4 2.3E-13 8E-18 99.4 3.1 50 149-201 53-103 (165)
45 3hct_A TNF receptor-associated 99.3 3.8E-13 1.3E-17 92.8 3.6 50 149-201 17-66 (118)
46 1e4u_A Transcriptional repress 99.3 4.1E-13 1.4E-17 85.4 3.3 53 149-202 10-64 (78)
47 1jm7_A BRCA1, breast cancer ty 99.3 6.3E-13 2.2E-17 90.8 3.4 50 150-202 21-72 (112)
48 2vje_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 81.2 2.9 48 149-200 7-57 (64)
49 3l11_A E3 ubiquitin-protein li 99.3 2.3E-13 7.9E-18 93.5 0.6 49 149-200 14-62 (115)
50 2vje_B MDM4 protein; proto-onc 99.3 1.1E-12 3.7E-17 80.1 2.6 48 149-200 6-56 (63)
51 1bor_A Transcription factor PM 99.3 5.9E-13 2E-17 79.3 1.1 47 149-202 5-51 (56)
52 2y1n_A E3 ubiquitin-protein li 99.3 2.5E-12 8.5E-17 104.6 5.0 51 149-202 331-381 (389)
53 3knv_A TNF receptor-associated 99.3 1.2E-12 3.9E-17 93.0 2.5 48 149-199 30-77 (141)
54 2kr4_A Ubiquitin conjugation f 99.2 6.4E-12 2.2E-16 81.4 3.7 49 149-201 13-61 (85)
55 4ic3_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 80.4 1.9 45 149-201 23-68 (74)
56 2kre_A Ubiquitin conjugation f 99.2 7.5E-12 2.6E-16 83.4 2.7 49 149-201 28-76 (100)
57 1wgm_A Ubiquitin conjugation f 99.2 1.4E-11 4.7E-16 81.8 3.1 49 149-201 21-70 (98)
58 1jm7_B BARD1, BRCA1-associated 99.1 5.6E-12 1.9E-16 86.8 0.9 46 149-200 21-67 (117)
59 3hcs_A TNF receptor-associated 99.1 2.4E-11 8.2E-16 89.1 3.6 50 149-201 17-66 (170)
60 2ea5_A Cell growth regulator w 99.1 5E-11 1.7E-15 73.7 3.9 45 149-201 14-59 (68)
61 3k1l_B Fancl; UBC, ring, RWD, 99.1 1.8E-11 6.3E-16 96.9 2.0 54 149-202 307-375 (381)
62 1vyx_A ORF K3, K3RING; zinc-bi 99.1 5.1E-11 1.7E-15 71.6 3.5 48 149-199 5-58 (60)
63 2c2l_A CHIP, carboxy terminus 99.1 5.1E-11 1.7E-15 94.0 3.7 50 149-201 207-256 (281)
64 2yu4_A E3 SUMO-protein ligase 99.1 7.9E-11 2.7E-15 77.7 3.4 49 149-200 6-63 (94)
65 2ecg_A Baculoviral IAP repeat- 99.0 6.3E-11 2.1E-15 74.8 1.7 44 150-201 25-69 (75)
66 2f42_A STIP1 homology and U-bo 99.0 1.3E-10 4.5E-15 85.0 3.5 50 149-201 105-154 (179)
67 2yho_A E3 ubiquitin-protein li 99.0 9.2E-11 3.2E-15 74.7 1.6 44 150-201 18-62 (79)
68 1wim_A KIAA0161 protein; ring 99.0 1.5E-10 5.2E-15 76.3 2.3 49 149-197 4-61 (94)
69 3t6p_A Baculoviral IAP repeat- 98.8 9.5E-10 3.3E-14 88.8 1.7 45 149-201 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.8 1.4E-09 4.9E-14 83.4 2.5 52 149-202 180-234 (267)
71 3vk6_A E3 ubiquitin-protein li 98.8 4.2E-09 1.4E-13 68.3 3.8 49 152-202 3-51 (101)
72 2bay_A PRE-mRNA splicing facto 98.8 3.8E-09 1.3E-13 63.6 2.7 50 151-204 4-54 (61)
73 2ek8_A Aminopeptidase; metallo 98.7 5E-08 1.7E-12 81.3 7.8 62 1-62 120-181 (421)
74 3fed_A Glutamate carboxypeptid 98.3 5.8E-07 2E-11 79.1 5.1 63 1-63 160-267 (707)
75 3nw0_A Non-structural maintena 98.2 2.1E-06 7E-11 65.9 5.1 50 149-201 179-230 (238)
76 3kas_A Transferrin receptor pr 98.1 3.1E-06 1.1E-10 73.7 5.5 63 1-63 137-230 (640)
77 3iib_A Peptidase M28; YP_92679 97.9 3.2E-05 1.1E-09 64.8 8.8 63 2-64 135-215 (444)
78 1y9z_A Alkaline serine proteas 97.6 7.9E-05 2.7E-09 62.3 6.3 62 2-63 280-349 (441)
79 1xf1_A C5A peptidase, SCP; hyd 97.6 0.00013 4.5E-09 66.4 7.2 57 2-60 287-343 (926)
80 3i6s_A Subtilisin-like proteas 97.4 0.00015 5E-09 63.5 5.7 57 2-64 290-346 (649)
81 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0022 7.6E-08 42.0 2.8 34 150-183 3-36 (101)
82 2lri_C Autoimmune regulator; Z 96.2 0.0029 9.9E-08 38.1 2.5 47 149-198 11-60 (66)
83 2ko5_A Ring finger protein Z; 95.8 0.003 1E-07 40.2 1.5 49 149-203 27-76 (99)
84 1wil_A KIAA1045 protein; ring 94.5 0.025 8.5E-07 35.2 2.5 31 149-183 14-47 (89)
85 1fp0_A KAP-1 corepressor; PHD 92.9 0.04 1.4E-06 35.0 1.6 47 149-198 24-73 (88)
86 2l5u_A Chromodomain-helicase-D 92.9 0.033 1.1E-06 32.8 1.1 45 149-196 10-57 (61)
87 2yql_A PHD finger protein 21A; 92.4 0.013 4.6E-07 33.9 -1.1 45 149-196 8-55 (56)
88 1mm2_A MI2-beta; PHD, zinc fin 92.3 0.019 6.5E-07 33.9 -0.5 47 149-198 8-57 (61)
89 2puy_A PHD finger protein 21A; 92.0 0.015 5.2E-07 34.2 -1.2 49 149-200 4-55 (60)
90 1f62_A Transcription factor WS 91.9 0.043 1.5E-06 31.0 0.7 45 152-196 2-49 (51)
91 2yt5_A Metal-response element- 91.8 0.033 1.1E-06 33.3 0.1 50 149-198 5-62 (66)
92 1we9_A PHD finger family prote 91.2 0.059 2E-06 32.0 0.8 49 149-197 5-58 (64)
93 2ysm_A Myeloid/lymphoid or mix 91.0 0.049 1.7E-06 36.2 0.4 47 149-195 6-55 (111)
94 3o36_A Transcription intermedi 91.0 0.035 1.2E-06 40.5 -0.4 47 149-198 3-52 (184)
95 2k16_A Transcription initiatio 90.7 0.044 1.5E-06 33.7 -0.1 51 149-200 17-71 (75)
96 3u5n_A E3 ubiquitin-protein li 90.6 0.047 1.6E-06 40.6 -0.1 45 149-197 6-54 (207)
97 2l43_A N-teminal domain from h 90.1 0.093 3.2E-06 33.4 1.0 50 149-198 24-76 (88)
98 3v43_A Histone acetyltransfera 90.1 0.32 1.1E-05 32.3 3.8 46 150-195 5-62 (112)
99 1xwh_A Autoimmune regulator; P 89.9 0.059 2E-06 32.3 -0.0 46 149-197 7-55 (66)
100 2ku3_A Bromodomain-containing 89.4 0.088 3E-06 32.0 0.5 49 149-197 15-66 (71)
101 1wev_A Riken cDNA 1110020M19; 88.2 0.081 2.8E-06 33.6 -0.3 50 150-199 16-74 (88)
102 2lv9_A Histone-lysine N-methyl 87.7 0.12 4E-06 33.6 0.3 46 150-196 28-75 (98)
103 1z60_A TFIIH basal transcripti 87.6 0.18 6.2E-06 29.3 1.0 43 151-194 16-58 (59)
104 3lqh_A Histone-lysine N-methyl 86.9 0.2 6.8E-06 36.5 1.1 47 151-197 3-63 (183)
105 3v43_A Histone acetyltransfera 86.7 0.13 4.6E-06 34.2 0.1 45 152-196 63-111 (112)
106 2kwj_A Zinc finger protein DPF 86.5 0.22 7.6E-06 33.2 1.1 45 151-195 2-59 (114)
107 2ro1_A Transcription intermedi 85.6 0.11 3.6E-06 38.1 -0.9 46 150-198 2-50 (189)
108 2e6r_A Jumonji/ARID domain-con 84.8 0.082 2.8E-06 33.9 -1.6 48 149-197 15-66 (92)
109 3vta_A Cucumisin; subtilisin-l 84.6 1.7 6E-05 37.7 6.1 52 5-63 288-339 (621)
110 2xb1_A Pygopus homolog 2, B-ce 84.4 0.2 6.9E-06 32.9 0.1 50 150-199 3-63 (105)
111 2lbm_A Transcriptional regulat 84.3 0.74 2.5E-05 31.9 2.9 45 149-196 62-116 (142)
112 3m62_A Ubiquitin conjugation f 84.1 0.62 2.1E-05 42.3 3.1 50 149-202 890-940 (968)
113 3ql9_A Transcriptional regulat 83.8 1.4 4.8E-05 30.0 4.1 45 149-197 56-111 (129)
114 4gne_A Histone-lysine N-methyl 82.1 1.1 3.9E-05 29.4 3.0 47 149-201 14-66 (107)
115 2e6s_A E3 ubiquitin-protein li 81.7 0.14 4.8E-06 31.6 -1.4 44 152-196 28-76 (77)
116 1weo_A Cellulose synthase, cat 81.6 3.8 0.00013 25.7 5.1 54 149-202 15-72 (93)
117 2ri7_A Nucleosome-remodeling f 81.4 0.41 1.4E-05 34.3 0.8 48 149-197 7-59 (174)
118 2cs3_A Protein C14ORF4, MY039 80.3 4.4 0.00015 24.9 4.9 45 149-194 14-64 (93)
119 1wem_A Death associated transc 80.0 0.85 2.9E-05 27.8 1.8 48 150-198 16-71 (76)
120 3shb_A E3 ubiquitin-protein li 79.4 0.14 4.8E-06 31.6 -2.0 44 152-196 28-76 (77)
121 1vfy_A Phosphatidylinositol-3- 78.9 1.7 5.7E-05 26.3 2.8 32 151-182 12-44 (73)
122 1wep_A PHF8; structural genomi 78.5 2.2 7.4E-05 26.2 3.3 49 149-198 11-64 (79)
123 3i2d_A E3 SUMO-protein ligase 77.3 2.4 8.4E-05 34.2 4.1 47 151-199 250-299 (371)
124 3t7l_A Zinc finger FYVE domain 77.2 2.1 7.2E-05 27.1 3.0 49 151-199 21-75 (90)
125 2kwj_A Zinc finger protein DPF 76.8 0.18 6.2E-06 33.6 -2.2 49 152-200 60-111 (114)
126 3fyb_A Protein of unknown func 76.6 1.1 3.8E-05 28.7 1.5 13 174-186 41-53 (104)
127 2o35_A Hypothetical protein DU 76.4 1.1 3.8E-05 28.7 1.5 13 174-186 42-54 (105)
128 1z2q_A LM5-1; membrane protein 76.3 2.3 7.8E-05 26.5 3.0 35 149-183 20-55 (84)
129 2kgg_A Histone demethylase jar 76.3 0.98 3.4E-05 25.3 1.2 44 152-195 4-52 (52)
130 1joc_A EEA1, early endosomal a 76.1 1.8 6.2E-05 29.2 2.7 32 151-182 70-102 (125)
131 1wfk_A Zinc finger, FYVE domai 75.3 2.6 8.7E-05 26.6 3.0 53 149-202 8-68 (88)
132 2l2t_A Receptor tyrosine-prote 75.2 7.7 0.00026 20.9 4.8 9 99-107 28-36 (44)
133 4fo9_A E3 SUMO-protein ligase 75.2 3.1 0.00011 33.4 4.2 47 151-199 216-265 (360)
134 2yw8_A RUN and FYVE domain-con 75.0 2.4 8.3E-05 26.2 2.9 50 150-199 19-74 (82)
135 3asl_A E3 ubiquitin-protein li 74.9 0.29 1E-05 29.5 -1.4 44 152-196 20-68 (70)
136 1y02_A CARP2, FYVE-ring finger 74.4 0.41 1.4E-05 32.2 -0.9 49 150-199 19-68 (120)
137 2ks1_B Epidermal growth factor 73.5 5.2 0.00018 21.6 3.5 9 99-107 29-37 (44)
138 1dvp_A HRS, hepatocyte growth 73.4 1.9 6.4E-05 32.2 2.4 33 150-182 161-194 (220)
139 2vpb_A Hpygo1, pygopus homolog 72.8 3 0.0001 24.6 2.8 33 149-181 7-41 (65)
140 3ask_A E3 ubiquitin-protein li 72.6 0.74 2.5E-05 34.5 -0.0 44 152-196 176-224 (226)
141 1x4u_A Zinc finger, FYVE domai 71.8 3.1 0.00011 25.8 2.8 34 149-182 13-47 (84)
142 2ysm_A Myeloid/lymphoid or mix 71.8 0.42 1.4E-05 31.6 -1.4 45 152-197 56-104 (111)
143 1wen_A Inhibitor of growth fam 71.7 1.5 5.1E-05 26.4 1.2 45 149-198 15-66 (71)
144 1zfo_A LAsp-1; LIM domain, zin 71.6 0.99 3.4E-05 22.3 0.3 28 151-180 4-31 (31)
145 3zyq_A Hepatocyte growth facto 71.2 2.3 7.9E-05 31.9 2.5 51 149-199 163-221 (226)
146 1weu_A Inhibitor of growth fam 70.6 1.8 6.2E-05 27.5 1.5 46 149-198 35-86 (91)
147 1wee_A PHD finger family prote 70.5 0.78 2.7E-05 27.7 -0.2 48 149-197 15-66 (72)
148 2cu8_A Cysteine-rich protein 2 70.4 2.1 7E-05 25.8 1.7 40 150-200 9-48 (76)
149 2jwa_A Receptor tyrosine-prote 69.7 11 0.00038 20.3 5.1 23 86-109 17-39 (44)
150 1iml_A CRIP, cysteine rich int 69.1 1.2 4E-05 26.9 0.3 42 150-196 27-69 (76)
151 2dj7_A Actin-binding LIM prote 67.3 2.3 7.7E-05 26.0 1.4 40 149-199 14-53 (80)
152 1wew_A DNA-binding family prot 67.0 1.9 6.3E-05 26.5 1.0 48 149-197 15-72 (78)
153 3o70_A PHD finger protein 13; 62.2 1.2 4.3E-05 26.5 -0.5 46 149-196 18-66 (68)
154 2co8_A NEDD9 interacting prote 62.0 5 0.00017 24.5 2.3 42 149-201 14-55 (82)
155 1zbd_B Rabphilin-3A; G protein 61.2 3.3 0.00011 28.4 1.4 48 149-196 54-106 (134)
156 2gmg_A Hypothetical protein PF 61.1 0.9 3.1E-05 29.6 -1.3 24 168-197 70-93 (105)
157 1g47_A Pinch protein; LIM doma 60.7 7.7 0.00026 23.1 3.0 43 149-201 10-52 (77)
158 1x4l_A Skeletal muscle LIM-pro 60.4 5.9 0.0002 23.3 2.4 40 150-199 5-46 (72)
159 3mjh_B Early endosome antigen 59.9 2.1 7.3E-05 21.7 0.2 10 190-199 7-16 (34)
160 2d8v_A Zinc finger FYVE domain 59.5 6.5 0.00022 23.1 2.3 31 149-183 7-38 (67)
161 1wd2_A Ariadne-1 protein homol 59.5 1.7 6E-05 25.2 -0.2 20 183-202 1-20 (60)
162 3f6q_B LIM and senescent cell 58.0 5.3 0.00018 23.3 1.9 42 150-201 11-52 (72)
163 1x63_A Skeletal muscle LIM-pro 54.9 7.3 0.00025 23.5 2.2 40 151-200 16-55 (82)
164 3a1b_A DNA (cytosine-5)-methyl 54.1 10 0.00034 26.7 2.9 44 149-196 78-133 (159)
165 1wyh_A SLIM 2, skeletal muscle 53.8 6.7 0.00023 23.0 1.8 40 151-200 6-45 (72)
166 1a7i_A QCRP2 (LIM1); LIM domai 53.6 3.6 0.00012 25.0 0.5 40 150-200 7-46 (81)
167 1x4k_A Skeletal muscle LIM-pro 53.5 6.3 0.00022 23.1 1.7 40 151-200 6-45 (72)
168 2jvx_A NF-kappa-B essential mo 53.4 2.3 7.9E-05 20.6 -0.3 11 190-200 5-15 (28)
169 1x68_A FHL5 protein; four-and- 53.1 6.9 0.00024 23.3 1.8 39 151-199 6-46 (76)
170 2zet_C Melanophilin; complex, 52.8 6.8 0.00023 27.4 1.9 47 149-196 67-116 (153)
171 1x61_A Thyroid receptor intera 52.7 8.6 0.00029 22.5 2.2 38 151-198 6-43 (72)
172 2d8z_A Four and A half LIM dom 52.6 10 0.00036 22.0 2.5 37 151-199 6-42 (70)
173 3mpx_A FYVE, rhogef and PH dom 52.3 3 0.0001 34.2 0.0 49 150-198 375-430 (434)
174 2d8y_A Eplin protein; LIM doma 52.1 13 0.00044 23.0 3.0 38 151-199 16-53 (91)
175 2dar_A PDZ and LIM domain prot 52.0 9.4 0.00032 23.6 2.4 40 149-200 24-63 (90)
176 2d8x_A Protein pinch; LIM doma 51.5 7.4 0.00025 22.7 1.7 39 150-200 5-43 (70)
177 1x62_A C-terminal LIM domain p 51.1 8.1 0.00028 23.3 1.9 39 149-199 14-52 (79)
178 2rsd_A E3 SUMO-protein ligase 50.1 1.3 4.3E-05 26.4 -1.9 45 150-196 10-64 (68)
179 2a20_A Regulating synaptic mem 49.9 0.91 3.1E-05 26.1 -2.4 48 149-196 8-59 (62)
180 2jmo_A Parkin; IBR, E3 ligase, 48.7 1.1 3.9E-05 27.6 -2.4 15 170-184 55-69 (80)
181 2lcq_A Putative toxin VAPC6; P 47.4 6.4 0.00022 27.7 1.1 26 167-199 134-159 (165)
182 2cur_A Skeletal muscle LIM-pro 46.8 10 0.00035 21.9 1.9 37 151-199 6-42 (69)
183 3c6w_A P28ING5, inhibitor of g 46.0 2.4 8.4E-05 24.4 -1.1 43 149-196 8-57 (59)
184 1nyp_A Pinch protein; LIM doma 44.9 9.1 0.00031 22.0 1.4 39 150-200 5-43 (66)
185 2vnf_A ING 4, P29ING4, inhibit 44.1 2.7 9.1E-05 24.3 -1.1 42 150-196 10-58 (60)
186 3o7a_A PHD finger protein 13 v 43.7 2.9 0.0001 23.3 -1.0 41 155-196 8-51 (52)
187 1x64_A Alpha-actinin-2 associa 43.2 18 0.0006 22.3 2.6 40 149-200 24-63 (89)
188 2cor_A Pinch protein; LIM doma 42.4 15 0.0005 22.1 2.1 39 150-200 15-53 (79)
189 2g6q_A Inhibitor of growth pro 40.9 3.3 0.00011 24.1 -1.1 43 149-196 10-59 (62)
190 2pk7_A Uncharacterized protein 38.6 6.7 0.00023 23.4 0.1 14 190-203 28-41 (69)
191 1v6g_A Actin binding LIM prote 38.5 13 0.00044 22.3 1.4 37 151-199 16-52 (81)
192 1loi_A Cyclic 3',5'-AMP specif 37.8 1 3.6E-05 20.4 -2.7 12 174-185 6-17 (26)
193 1iij_A ERBB-2 receptor protein 37.6 18 0.00061 18.4 1.6 8 100-107 26-33 (35)
194 1m3v_A FLIN4, fusion of the LI 37.1 21 0.0007 23.5 2.3 50 151-201 33-82 (122)
195 2l4z_A DNA endonuclease RBBP8, 36.5 13 0.00046 24.6 1.3 39 150-199 61-99 (123)
196 2pv0_B DNA (cytosine-5)-methyl 36.4 22 0.00074 28.9 2.7 46 149-197 92-148 (386)
197 2das_A Zinc finger MYM-type pr 36.3 39 0.0013 19.4 3.0 34 150-183 20-55 (62)
198 3vhs_A ATPase wrnip1; zinc fin 35.8 9.7 0.00033 17.7 0.3 10 190-199 8-17 (29)
199 2xjy_A Rhombotin-2; oncoprotei 35.6 25 0.00086 23.2 2.6 48 151-199 30-77 (131)
200 1b8t_A Protein (CRP1); LIM dom 35.6 14 0.00047 26.6 1.3 27 151-179 116-142 (192)
201 1y0n_A Hypothetical UPF0270 pr 35.5 55 0.0019 19.9 3.8 26 5-31 33-61 (78)
202 1wig_A KIAA1808 protein; LIM d 35.3 15 0.00051 21.7 1.3 27 151-180 6-32 (73)
203 2cuq_A Four and A half LIM dom 34.7 19 0.00064 21.5 1.7 37 151-199 16-52 (80)
204 2kdx_A HYPA, hydrogenase/ureas 34.3 13 0.00044 24.6 0.9 27 165-198 73-100 (119)
205 3arc_L Photosystem II reaction 33.5 50 0.0017 16.7 3.5 18 86-103 17-34 (37)
206 4ayb_P DNA-directed RNA polyme 33.1 8.2 0.00028 21.0 -0.2 32 168-202 6-37 (48)
207 2jny_A Uncharacterized BCR; st 32.7 4.6 0.00016 24.0 -1.4 19 182-201 5-23 (67)
208 2kpi_A Uncharacterized protein 32.1 18 0.00063 20.4 1.2 13 150-162 10-22 (56)
209 1x3h_A Leupaxin; paxillin fami 32.0 17 0.00057 21.7 1.1 38 151-200 16-53 (80)
210 2dlo_A Thyroid receptor-intera 32.0 16 0.00056 21.9 1.1 37 151-199 16-52 (81)
211 3pwf_A Rubrerythrin; non heme 31.8 14 0.00046 26.3 0.7 23 167-197 140-162 (170)
212 2ct7_A Ring finger protein 31; 31.5 3.3 0.00011 25.8 -2.3 32 167-198 44-77 (86)
213 3kqi_A GRC5, PHD finger protei 31.2 11 0.00036 22.7 0.1 47 151-198 11-62 (75)
214 2egq_A FHL1 protein; LIM domai 30.3 21 0.00071 21.1 1.3 40 151-200 16-58 (77)
215 3qkb_A Uncharacterized protein 30.2 30 0.001 22.6 2.1 15 12-26 68-82 (111)
216 1l8d_A DNA double-strand break 29.4 13 0.00046 24.0 0.4 11 190-200 49-59 (112)
217 1j2o_A FLIN2, fusion of rhombo 28.8 35 0.0012 22.0 2.3 33 151-184 31-64 (114)
218 2iyb_E Testin, TESS, TES; LIM 28.6 22 0.00077 20.2 1.2 38 152-199 4-43 (65)
219 2xqn_T Testin, TESS; metal-bin 27.7 46 0.0016 21.7 2.9 45 151-200 31-75 (126)
220 2l3k_A Rhombotin-2, linker, LI 27.4 67 0.0023 20.9 3.6 36 150-186 36-71 (123)
221 2jo1_A Phospholemman; FXYD1, N 26.8 1E+02 0.0036 18.2 4.6 8 73-80 8-15 (72)
222 2cup_A Skeletal muscle LIM-pro 25.9 36 0.0012 21.2 2.0 46 150-200 33-78 (101)
223 2jz7_A Selenium binding protei 25.5 61 0.0021 19.9 2.8 20 8-27 37-56 (81)
224 2hf1_A Tetraacyldisaccharide-1 24.5 20 0.0007 21.2 0.5 13 190-202 10-22 (68)
225 2jmi_A Protein YNG1, ING1 homo 24.4 10 0.00036 23.8 -0.9 43 149-196 25-75 (90)
226 2jr6_A UPF0434 protein NMA0874 24.2 21 0.00072 21.1 0.5 13 190-202 10-22 (68)
227 2lqo_A Putative glutaredoxin R 24.1 37 0.0013 21.1 1.7 48 4-51 12-62 (92)
228 2akl_A PHNA-like protein PA012 23.9 23 0.00079 23.9 0.7 25 151-175 28-54 (138)
229 2i50_A Ubiquitin carboxyl-term 23.6 20 0.0007 24.0 0.4 30 168-197 4-37 (126)
230 2js4_A UPF0434 protein BB2007; 23.2 22 0.00074 21.2 0.4 13 190-202 10-22 (70)
231 3kv5_D JMJC domain-containing 23.0 21 0.00073 30.0 0.5 47 150-197 37-88 (488)
232 1wvk_A AT2G23090/F21P24.15; st 22.1 20 0.00069 22.3 0.1 13 149-161 44-56 (86)
233 3c5k_A HD6, histone deacetylas 22.1 44 0.0015 21.7 1.8 24 150-176 24-47 (109)
234 1lko_A Rubrerythrin all-iron(I 21.9 20 0.00067 25.9 0.1 8 190-197 173-180 (191)
235 2y1b_A RCSF protein, putative 21.0 70 0.0024 21.5 2.6 15 13-27 80-94 (128)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.80 E-value=7.9e-20 Score=120.73 Aligned_cols=79 Identities=34% Similarity=0.762 Sum_probs=66.2
Q ss_pred CCcCCCCCHHHHhcCCceeeeccccccCCCCCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 119 PEQTRQLPRSTVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
....+++.++.++.+|...+....... +.+..|+||++.|..++.++.+||||.||..||+.|+..+.. ||+||..+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~--~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~-CP~Cr~~~ 87 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAV--GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGT-CPVCRCMF 87 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSS--SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCB-CTTTCCBS
T ss_pred CcCCCCCCHHHHHhCCCeeeccccccc--CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCc-CcCcCccC
Confidence 345588999999999998887654322 255789999999999989999999999999999999987664 99999988
Q ss_pred cc
Q 028085 199 RR 200 (214)
Q Consensus 199 ~~ 200 (214)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-20 Score=117.37 Aligned_cols=70 Identities=43% Similarity=0.936 Sum_probs=56.6
Q ss_pred HHhcCCceeeeccccccCCCCCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 129 TVNALPSFVFSSVTSVRCHGRETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.++.+|..+++...... .+..|+||++.|..++.++.+||+|.||..|+.+|++.+.. ||+||+++....
T Consensus 5 ~i~~lp~~~~~~~~~~~---~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~-CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQS---EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT-CPICRADSGPSS 74 (75)
T ss_dssp CCSSCCCEEBCSSSCSS---SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSS-CTTTCCCCCCCC
T ss_pred hHhhCCcEEecCccccC---CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCc-CcCcCCcCCCCC
Confidence 34567777776533222 45789999999999999999999999999999999988665 999999987543
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=106.55 Aligned_cols=53 Identities=49% Similarity=1.048 Sum_probs=47.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.|..++.++.++|||.||..|+.+|+..+.. ||+||..+....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSB-CTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCC-CcCcCccccCcC
Confidence 55789999999998888999999999999999999988665 999999987654
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7e-18 Score=107.08 Aligned_cols=54 Identities=33% Similarity=0.920 Sum_probs=47.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
.+..|+||++.+..++.++.++|+|.||..|+.+|++.+.. ||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~-CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSB-CTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCc-CCCcCcccccccc
Confidence 45789999999999989999999999999999999988765 9999999875543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=6.9e-18 Score=108.23 Aligned_cols=56 Identities=41% Similarity=0.971 Sum_probs=48.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccCCC
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNE 205 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~ 205 (214)
.+..|+||++.|..++.++.++|+|.||..||.+|++.+.. ||+||..+......+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCS-CTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCc-CcCcCCccCCcccCC
Confidence 55789999999999888899999999999999999987655 999999997665443
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.71 E-value=3e-18 Score=102.45 Aligned_cols=50 Identities=44% Similarity=1.062 Sum_probs=44.7
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
++.+|+||++++.+++.+..++ |||.||.+|+.+|++.+.. ||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~-CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCS-CSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCc-CcCCCCEeE
Confidence 4568999999999998899998 9999999999999987655 999999864
No 7
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=120.75 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=61.8
Q ss_pred Ccccc-ccHHHHHHHHHHcCCcEEEEEeCC-CCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhh-cCCCceEEecc
Q 028085 1 MIRGQ-CNFSYKIQNAQAAGYDAAIVYALR-KKSPLIYMTYPEGANVPAFYVTLETGAYLKEHAR-GEAGECCIFPL 74 (214)
Q Consensus 1 v~rg~-C~f~~K~~~a~~~ga~aviv~~~~-~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~-~~~~~~~~~p~ 74 (214)
|+||+ |+|.+|+++||++||+||||||+. +++.+++|......+||++||++.+|+.|++.+. +..+.+.+...
T Consensus 110 V~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 110 IQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp EESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence 58999 999999999999999999999975 4446788886566789999999999999999885 44566655544
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=107.40 Aligned_cols=52 Identities=25% Similarity=0.703 Sum_probs=41.2
Q ss_pred CCcccccccccccC-----------CCceEEec-CCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYRE-----------GENLRVLP-CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~-----------~~~~~~l~-C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.++.|+||+++|.+ ++.++.++ |+|.||.+||++|++.+++ ||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCB-CTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCC-CCCcCCCcchh
Confidence 34568888887753 45567776 9999999999999988665 99999987644
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.66 E-value=7.7e-17 Score=110.84 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=46.3
Q ss_pred CCcccccccccccCCC---------------ceEEecCCCccChhhHHHHHHh----CCCCccccccccccccCCCCCc
Q 028085 149 RETLCSICLEDYREGE---------------NLRVLPCRHEFHSSCVDSWLIR----WGTFCPVCRHEIRRSTSNEGNE 208 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~---------------~~~~l~C~H~FH~~Ci~~Wl~~----~~~~CP~Cr~~i~~~~~~~~~~ 208 (214)
.+..|+||++.|..+. .++.++|+|.||..||..|+.. .+.+||+||+.+....++.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 3468999999997643 3457899999999999999963 2336999999997776655443
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.66 E-value=7.8e-17 Score=96.18 Aligned_cols=50 Identities=34% Similarity=0.695 Sum_probs=42.9
Q ss_pred CCcccccccccccCC-CceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREG-ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~-~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
++..|+||++.+.++ +.++.++|||.||..|+.+|+..+.. ||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCC-CTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCc-CCCCCCcCC
Confidence 456899999999754 35788899999999999999998755 999998864
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.63 E-value=1.2e-16 Score=107.70 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=41.9
Q ss_pred CCcccccccccccCC---------------CceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREG---------------ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~---------------~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.++.|+||++.|... ..++.++|+|.||..||++||..+.+ ||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~-CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSB-CSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCc-CcCCCCcce
Confidence 457899999998854 13677899999999999999988555 999999854
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.62 E-value=1.9e-16 Score=99.55 Aligned_cols=53 Identities=32% Similarity=0.681 Sum_probs=44.7
Q ss_pred CCcccccccccccCC----CceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
++..|+||++.+.+. +.+..++|||.||..|+.+|+..+.. ||+||.++....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSB-CTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCC-CCCCCCccChhh
Confidence 557899999998753 45688999999999999999988665 999999987553
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=97.89 Aligned_cols=51 Identities=33% Similarity=0.708 Sum_probs=43.2
Q ss_pred CCcccccccccccCC----CceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.+..|+||++.+.+. +.+..++|||.||..|+..|+..+.. ||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSS-CTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCC-CCCCCCccCc
Confidence 557899999999853 34588999999999999999988665 9999998764
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=98.90 Aligned_cols=57 Identities=26% Similarity=0.688 Sum_probs=46.6
Q ss_pred CCcccccccccccCCCceEEecCC-----CccChhhHHHHHHhCC-CCccccccccccccCCCC
Q 028085 149 RETLCSICLEDYREGENLRVLPCR-----HEFHSSCVDSWLIRWG-TFCPVCRHEIRRSTSNEG 206 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~-----H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~~~~~~~ 206 (214)
.+..|+||++++.+++.+ .+||+ |.||.+||++|+..++ .+||+||..+......++
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 456899999999887665 69996 9999999999998865 369999999876554433
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.60 E-value=3.1e-16 Score=96.47 Aligned_cols=52 Identities=33% Similarity=0.685 Sum_probs=43.8
Q ss_pred CCcccccccccccCC----CceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
++.+|+||++.+.+. +.+..++|||.||.+|+.+|+..+.. ||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSB-CTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCC-CCCCCccCCcc
Confidence 456899999999753 45688999999999999999988555 99999998754
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.2e-16 Score=97.19 Aligned_cols=50 Identities=32% Similarity=0.608 Sum_probs=42.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.+. ....++|||.||..|+..|+..+.. ||+||..+....
T Consensus 14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSB-CSSSCCBCCHHH
T ss_pred CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCc-CcCcCchhCHhh
Confidence 4568999999997 4578899999999999999987654 999999987554
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.57 E-value=2.1e-15 Score=93.90 Aligned_cols=50 Identities=34% Similarity=0.802 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+ .+..+||||.||..|+..|+..+.. ||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPT-CPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCS-TTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCc-CcCCChhhHhh
Confidence 45689999999873 3578999999999999999988665 99999988643
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=94.00 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.+.+ ...+ +|||.||..||..|+..+.. ||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNR-CPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSS-CTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCc-CCCcCcccCccc
Confidence 45789999999984 3555 99999999999999987555 999999987654
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=95.27 Aligned_cols=49 Identities=35% Similarity=0.935 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.+.+ ..+||||.||..|+..|+.... .||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCC
Confidence 45689999999884 7899999999999999998655 4999999987543
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-15 Score=96.99 Aligned_cols=53 Identities=28% Similarity=0.669 Sum_probs=45.0
Q ss_pred CCcccccccccccCCCc-eEEecCCCccChhhHHHHHHhC--CCCccccccccccc
Q 028085 149 RETLCSICLEDYREGEN-LRVLPCRHEFHSSCVDSWLIRW--GTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~-~~~l~C~H~FH~~Ci~~Wl~~~--~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.|.+++. ++.++|||.||..|+..|+..+ ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45789999999997654 7889999999999999999875 23599999988654
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.54 E-value=4.5e-16 Score=106.30 Aligned_cols=50 Identities=28% Similarity=0.597 Sum_probs=1.1
Q ss_pred CCcccccccccccCC-------------C--ceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREG-------------E--NLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~-------------~--~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.++.|+||+++|.+. + .+..++|+|.||..||++||..+.+ ||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~-CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCc-CCCCCCeee
Confidence 457899999999752 2 3344689999999999999988665 999999854
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=91.91 Aligned_cols=50 Identities=22% Similarity=0.473 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+. ..++|||.||..|+..|+...+..||+||..+..+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 557899999999854 45899999999999999964444699999998654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=92.39 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=42.3
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCC-CCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWG-TFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.+.+ .+.++ |||.||..||..|+.... ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 45789999999984 47799 999999999999998753 35999999865443
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=94.39 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.+..|+||++.+.+ ...++|||.||..|+..|+..... ||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~-CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPR-CYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSB-CSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCc-CCCcCcccc
Confidence 45689999999973 467999999999999999987555 999999985
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.6e-15 Score=92.17 Aligned_cols=50 Identities=26% Similarity=0.638 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHh--CCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR--WGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~--~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+. ....++|||.||..|+..|+.. ....||+||..+..+
T Consensus 19 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 5578999999998 4577899999999999999973 233699999998654
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=1.1e-14 Score=89.71 Aligned_cols=52 Identities=35% Similarity=0.675 Sum_probs=42.2
Q ss_pred Ccccccccc-cccCCCc-eEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLE-DYREGEN-LRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~-~~~~~~~-~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+..|+||++ .+.+... +..++|||.||..|+++|+......||+||..+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 7776543 356799999999999999876555699999998654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=97.03 Aligned_cols=50 Identities=30% Similarity=0.672 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCceEE-ecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRV-LPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~-l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+. ..+. ++|||.||..||..|+...+..||+||.++...
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3468999999998 3466 899999999999999998744599999998654
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.48 E-value=9.2e-15 Score=103.73 Aligned_cols=48 Identities=38% Similarity=0.888 Sum_probs=41.4
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+..|+||++.|. .++.+||||.||..|+..|+..+.. ||+||.++...
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIE-CPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSB-CTTTCCBCCCE
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCc-CCCCCCcCCCC
Confidence 357999999998 4578999999999999999987655 99999998643
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=2.4e-14 Score=91.50 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+. ....++|||.||+.||..|+..++.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4578999999998 4578899999999999999986445699999998654
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=85.53 Aligned_cols=43 Identities=28% Similarity=0.637 Sum_probs=36.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHh--CCCCcccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR--WGTFCPVC 194 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~--~~~~CP~C 194 (214)
.+..|+||++.+.+ .+.++|||.||..||..|++. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 55789999999984 478899999999999999985 23369998
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=99.08 Aligned_cols=51 Identities=25% Similarity=0.441 Sum_probs=43.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+..|+||++.+. ....++|||.||..|+..|+..+...||+||..+....
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 101 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY 101 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCC
Confidence 3468999999999 45788999999999999999865546999999997633
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.43 E-value=8e-14 Score=91.94 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCC-CCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWG-TFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.|.+ .+.++ |||.||..||..|+.... ..||+||..+...
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 56789999999984 47899 999999999999997654 3699999987433
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1.5e-13 Score=89.10 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC-----CCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-----GTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-----~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+. ..++|||.||..|+..|+... ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 457899999999844 689999999999999999883 33699999998754
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.42 E-value=4.7e-14 Score=99.26 Aligned_cols=53 Identities=32% Similarity=0.681 Sum_probs=44.7
Q ss_pred CCcccccccccccCC----CceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
++.+|+||++.|.+. +.++.++|||.||.+|+.+|++.+.. ||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSB-CTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCC-CCCCCCcCcccc
Confidence 557899999999753 45689999999999999999987665 999999887554
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=89.44 Aligned_cols=50 Identities=32% Similarity=0.651 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC-----CCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-----GTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-----~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+ ...++|||.||..|+..|+... ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 45789999999984 3668999999999999999871 33599999998754
No 36
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=86.39 Aligned_cols=52 Identities=21% Similarity=0.511 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC-CCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG-TFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~~~ 202 (214)
...+|+||.+.+..++. -..|+|.||..||.+|++.+. .+||+||++...+.
T Consensus 14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 44689999999997753 337999999999999998762 35999999876443
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=83.20 Aligned_cols=43 Identities=37% Similarity=0.906 Sum_probs=35.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHh--CCCCcccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR--WGTFCPVC 194 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~--~~~~CP~C 194 (214)
.+..|+||++.+.+. +.++|||.||..|+..|+.. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457899999999854 56899999999999999754 33369998
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=3.1e-14 Score=91.18 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC------CCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW------GTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~------~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+. +.++|||.||..|+..|+... ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 557899999999843 568999999999999999863 33699999998754
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=92.13 Aligned_cols=49 Identities=24% Similarity=0.629 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+ ...+ +|||.||..|+..|+..+. .||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCChh
Confidence 34689999999984 4566 8999999999999998755 499999988753
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=98.08 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=42.6
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+..|+||++.+. ....++|||.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 468999999998 4477999999999999999987654699999998765
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.38 E-value=2e-13 Score=92.74 Aligned_cols=49 Identities=20% Similarity=0.716 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+.+ ...+ +|||.||..|+..|+..+. .||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCC-cCcCCCcccccc
Confidence 45689999999983 4566 9999999999999998765 499999998754
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=3.1e-13 Score=92.96 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=43.9
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccccCCC
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSNE 205 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~~ 205 (214)
+..|+||++.+. ....++|||.||..|+..|+......||+||.++......+
T Consensus 23 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 468999999998 44679999999999999999874446999999987655333
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.36 E-value=2.5e-13 Score=95.50 Aligned_cols=53 Identities=32% Similarity=0.681 Sum_probs=44.5
Q ss_pred CCcccccccccccCC----CceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREG----ENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~----~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
+...|+||++.+.+. ..+..++|||.||..|+++|++..++ ||+||.++..+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSB-CTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCC-CCCCCCcCChhc
Confidence 457899999998752 34578899999999999999988665 999999987653
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.36 E-value=2.3e-13 Score=99.39 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.|.+ ...+ +|||.||..|+..|+......||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 34589999999984 3555 99999999999999987455699999998543
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=3.8e-13 Score=92.79 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+. ..+.++|||.||..|+..|+......||+||.++...
T Consensus 17 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4568999999998 4477899999999999999988764699999998764
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.35 E-value=4.1e-13 Score=85.38 Aligned_cols=53 Identities=19% Similarity=0.532 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCceEEec--CCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP--CRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
++..|+||++.+...+ +..+| |||.||..|+..|+......||.||+++....
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 5578999999986543 23444 99999999999998654457999999987554
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=6.3e-13 Score=90.79 Aligned_cols=50 Identities=30% Similarity=0.621 Sum_probs=41.4
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCC--CCcccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG--TFCPVCRHEIRRST 202 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~--~~CP~Cr~~i~~~~ 202 (214)
...|+||++.+.+. ..++|||.||..|+..|+..+. ..||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 45899999999844 5689999999999999998653 25999999987543
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.31 E-value=7.1e-13 Score=81.19 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCceEEe--cCCCc-cChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
++..|+||++... ....+ ||||. |+.+|+..|...+.. ||+||+++..
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~-CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKP-CPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCC-CTTTCCCCCE
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCc-CCCcCcchhc
Confidence 4468999999977 33555 99999 899999999987665 9999998853
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.31 E-value=2.3e-13 Score=93.47 Aligned_cols=49 Identities=31% Similarity=0.702 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.+..|+||++.+. ..+.++|||.||..|+..|+......||+||..+..
T Consensus 14 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3468999999998 457889999999999999997655569999999864
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=1.1e-12 Score=80.08 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCceEEe--cCCCc-cChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.+..|.||++...+ ...+ ||||. |+..|+..|.+.+.. ||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~-CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGAS-CPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCB-CTTTCCBCCE
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCc-CCCcCchhhc
Confidence 45689999998763 3455 99998 999999999977554 9999998853
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=5.9e-13 Score=79.34 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=38.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
++..|+||++.|.+ .+.|||||.||..|+..| ...||+||+.+..+.
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 55789999999984 478999999999999884 335999999987553
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.28 E-value=2.5e-12 Score=104.58 Aligned_cols=51 Identities=37% Similarity=0.855 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
....|+||++.+. .+..+||||.||..|+..|+......||+||.++....
T Consensus 331 ~~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3468999999987 56889999999999999999844446999999987653
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=92.99 Aligned_cols=48 Identities=31% Similarity=0.490 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.+..|+||++.+.+ .+.++|||.||..||..|+......||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 56789999999984 4779999999999999999876546999999864
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=6.4e-12 Score=81.36 Aligned_cols=49 Identities=16% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++-+. .++.++|||.|++.||..|+..+. +||+||.++...
T Consensus 13 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred hheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCC-CCCCCcCCCChH
Confidence 4578999999999 558999999999999999998754 599999988654
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=3.5e-12 Score=80.43 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
++..|+||++.+. .+..+||||. ||..|+..| . .||+||.++...
T Consensus 23 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----D-KCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----S-BCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----c-cCCCcCcCccCc
Confidence 3468999999987 5688999999 999999998 3 499999988654
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.18 E-value=7.5e-12 Score=83.45 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++-|. .++.++|||.|++.||..|+... .+||+||.++...
T Consensus 28 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNS-PTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSC-SBCSSSCCBCCTT
T ss_pred HhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcC-CCCCCCCCCCChh
Confidence 4578999999999 55899999999999999999864 4599999998654
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=1.4e-11 Score=81.85 Aligned_cols=49 Identities=20% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCceEEecCC-CccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCR-HEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~-H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++-|. .++.++|| |.|++.||..|+..+. +||+||.++...
T Consensus 21 ~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTT
T ss_pred HhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCChh
Confidence 4578999999999 45889999 9999999999998754 599999998654
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=5.6e-12 Score=86.77 Aligned_cols=46 Identities=35% Similarity=0.572 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
.+..|+||++.|.+ ++.+ +|||.||..||..|+. . .||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~-~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--T-GCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--T-BCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--C-CCcCCCCcCcc
Confidence 34689999999984 4677 9999999999999986 3 49999999853
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2.4e-11 Score=89.07 Aligned_cols=50 Identities=30% Similarity=0.570 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
++..|+||++.+.+ ++.++|||.||..|+..|+......||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45789999999984 477999999999999999987664699999998764
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5e-11 Score=73.69 Aligned_cols=45 Identities=33% Similarity=0.817 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
++..|.||++... .+..+||||. ||..|+.. .. .||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~-~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQ-QCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CS-SCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CC-CCCCCCcchhce
Confidence 5678999999977 5689999999 99999983 24 499999998654
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.10 E-value=1.8e-11 Score=96.90 Aligned_cols=54 Identities=24% Similarity=0.632 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCceE-----EecCCCccChhhHHHHHHhCC----------CCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLR-----VLPCRHEFHSSCVDSWLIRWG----------TFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~-----~l~C~H~FH~~Ci~~Wl~~~~----------~~CP~Cr~~i~~~~ 202 (214)
...+|+||++.+.+++++- ..+|+|.||..|+.+|++... ..||+||+++..+-
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 5678999999998743332 246999999999999997631 15999999987653
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.10 E-value=5.1e-11 Score=71.58 Aligned_cols=48 Identities=29% Similarity=0.678 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCceEEecCC--C---ccChhhHHHHHHhC-CCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCR--H---EFHSSCVDSWLIRW-GTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~--H---~FH~~Ci~~Wl~~~-~~~CP~Cr~~i~ 199 (214)
+...|.||+++. ++++ .+||. | .||.+|+++|+... +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999983 3344 68964 5 89999999999864 346999998864
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=5.1e-11 Score=94.00 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=43.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+||++-+. .++.+||||.||+.||..|+..+..+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 5578999999999 5588999999999999999987555599999998654
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.9e-11 Score=77.68 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=40.1
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhC-----CCCccc--cccc-ccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRW-----GTFCPV--CRHE-IRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~-----~~~CP~--Cr~~-i~~ 200 (214)
.+..|+||++.|. .++.++ |||.|++.||..|+..+ ..+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4578999999999 457886 99999999999999875 236999 9866 543
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=6.3e-11 Score=74.84 Aligned_cols=44 Identities=30% Similarity=0.721 Sum_probs=35.9
Q ss_pred CcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+..|+||++.+. .+..+||||. ||..|+.. .. .||+||.++...
T Consensus 25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~-~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VD-KCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CS-BCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CC-CCccCCceecCc
Confidence 457999999987 4578999999 99999964 23 499999998653
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.02 E-value=1.3e-10 Score=85.03 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+||++-+. .++.+||||.|+..||..|+..+..+||+||.++...
T Consensus 105 ~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 5578999999999 4588899999999999999987544699999988654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.99 E-value=9.2e-11 Score=74.73 Aligned_cols=44 Identities=34% Similarity=0.767 Sum_probs=37.4
Q ss_pred CcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+..|+||++.+. .+..+||||. |+..|+..| . .||+||.++...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----Q-SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----S-BCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----C-cCCCCCchhhCe
Confidence 458999999987 5688999999 999999876 2 499999988654
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.5e-10 Score=76.33 Aligned_cols=49 Identities=20% Similarity=0.590 Sum_probs=39.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC-------CCCccc--cccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW-------GTFCPV--CRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~-------~~~CP~--Cr~~ 197 (214)
...+|+||++++...+.+..++|||.||.+|+..++... ...||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999999876555555799999999999999752 126999 9987
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.81 E-value=9.5e-10 Score=88.83 Aligned_cols=45 Identities=29% Similarity=0.768 Sum_probs=38.5
Q ss_pred CCcccccccccccCCCceEEecCCCc-cChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHE-FHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~-FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
.+..|+||++.+. .+..+||||. ||..|+..| . .||+||.++...
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----R-KCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----S-BCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----C-cCCCCCCCccCe
Confidence 4568999999998 5688999999 999999988 3 499999998654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.4e-09 Score=83.41 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC-CCccc--ccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG-TFCPV--CRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~-~~CP~--Cr~~i~~~~ 202 (214)
.+..|+||++.|. +.|+.+.|||.|++.||..|+..+. ..||+ ||..+....
T Consensus 180 ~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 4568999999998 3444458999999999999997643 36999 999876543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.79 E-value=4.2e-09 Score=68.29 Aligned_cols=49 Identities=24% Similarity=0.572 Sum_probs=39.4
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
-|++|--.+. ...|.+||+|+||.+|+..|.++....||+||.++..-+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4777776655 345899999999999999999776567999999886543
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.75 E-value=3.8e-09 Score=63.61 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=42.6
Q ss_pred cccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccccccCC
Q 028085 151 TLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTSN 204 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~~ 204 (214)
..|+||++-+.+ ...+ +|||+|.+.||.+|++.+.. ||+.+.++......
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChhhcE
Confidence 579999999993 4777 89999999999999988766 99999998766543
No 73
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.66 E-value=5e-08 Score=81.30 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=50.5
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHh
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHA 62 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~ 62 (214)
|+||+|+|.+|+++|+++||.|+||||+.+......+.......||++.|+.++++.|.+.+
T Consensus 120 v~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 120 IQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANL 181 (421)
T ss_dssp EECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHh
Confidence 46899999999999999999999999986542222333334578999999999999998876
No 74
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.29 E-value=5.8e-07 Score=79.08 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=46.9
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCC-----C-----------------CCeee---eeCC---------------
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRK-----K-----------------SPLIY---MTYP--------------- 40 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~-----~-----------------~~~~~---m~~~--------------- 40 (214)
|+||+|+|.+|+++|+++||.||||||+.. + ..+.. .+++
T Consensus 160 v~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~ 239 (707)
T 3fed_A 160 ARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLD 239 (707)
T ss_dssp EECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCC
T ss_pred EECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccC
Confidence 468999999999999999999999998621 0 00100 0100
Q ss_pred -----CCCeeeEEEEchhhHHHHHHHhh
Q 028085 41 -----EGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 41 -----~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
....||++.|++.+|+.|+..+.
T Consensus 240 ~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 240 VEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp GGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred hhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 12589999999999999998764
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.16 E-value=2.1e-06 Score=65.86 Aligned_cols=50 Identities=22% Similarity=0.526 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCceEEec-CCCccChhhHHHHHHhCC-CCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP-CRHEFHSSCVDSWLIRWG-TFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~-C~H~FH~~Ci~~Wl~~~~-~~CP~Cr~~i~~~ 201 (214)
....|+||.+-...+ ..-+ |+|.||..|+..|++.+. ..||.|+.+....
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356899999999876 3333 999999999999998754 3699999986544
No 76
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.09 E-value=3.1e-06 Score=73.75 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=47.0
Q ss_pred CccccccHHHHHHHHHHcCCcEEEEEeCCCCCCe--------e----------eee-------------CCCCCeeeEEE
Q 028085 1 MIRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPL--------I----------YMT-------------YPEGANVPAFY 49 (214)
Q Consensus 1 v~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~--------~----------~m~-------------~~~~~~Ip~v~ 49 (214)
|+||+|+|.+|+++|+++||+||||||+..+.+. . +.+ ......||++.
T Consensus 137 v~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~ 216 (640)
T 3kas_A 137 VRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQT 216 (640)
T ss_dssp EESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEE
T ss_pred EecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccccCCCCCCEEe
Confidence 4689999999999999999999999997532111 0 000 00124799999
Q ss_pred EchhhHHHHHHHhh
Q 028085 50 VTLETGAYLKEHAR 63 (214)
Q Consensus 50 v~~~~g~~L~~~~~ 63 (214)
|+.++++.|.+.+.
T Consensus 217 Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 217 ISRAAAEKLFGNME 230 (640)
T ss_dssp CCHHHHHHHHTTEE
T ss_pred cCHHHHHHHHHHcc
Confidence 99999999987653
No 77
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=97.95 E-value=3.2e-05 Score=64.79 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=45.9
Q ss_pred cccccc---------HHHH----HHHHHHcCCcEEEEEeCCCCCC----eeeee-CCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 2 IRGQCN---------FSYK----IQNAQAAGYDAAIVYALRKKSP----LIYMT-YPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 2 ~rg~C~---------f~~K----~~~a~~~ga~aviv~~~~~~~~----~~~m~-~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
.||.|. |..| +.+|+++||+|+|+||+.+... ...|. ......||++.|+.++|+.|...+.
T Consensus 135 ~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~ 214 (444)
T 3iib_A 135 DAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLK 214 (444)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHT
T ss_pred eCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHh
Confidence 577774 6666 4679999999999999754321 11222 2234689999999999999998775
Q ss_pred c
Q 028085 64 G 64 (214)
Q Consensus 64 ~ 64 (214)
.
T Consensus 215 ~ 215 (444)
T 3iib_A 215 R 215 (444)
T ss_dssp T
T ss_pred C
Confidence 3
No 78
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.63 E-value=7.9e-05 Score=62.33 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=48.4
Q ss_pred ccccc-----cHHHHHHHHHHcCCcEEEEEeCCCCCCe---eeeeCCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 2 IRGQC-----NFSYKIQNAQAAGYDAAIVYALRKKSPL---IYMTYPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 2 ~rg~C-----~f~~K~~~a~~~ga~aviv~~~~~~~~~---~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
+||.| +|.+|+++|+++||.++|+||+.+.... +.+.......+|+++|+.++|+.|+.++.
T Consensus 280 ~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~ 349 (441)
T 1y9z_A 280 ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLG 349 (441)
T ss_dssp ECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTT
T ss_pred eccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhc
Confidence 46655 8999999999999999999987643221 22333445689999999999999998775
No 79
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.56 E-value=0.00013 Score=66.38 Aligned_cols=57 Identities=30% Similarity=0.490 Sum_probs=47.7
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHH
Q 028085 2 IRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKE 60 (214)
Q Consensus 2 ~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~ 60 (214)
+||.|+|.+|+.+|+++||.|+|+||+..+...+.+ .....+|+++|+.++|..|+.
T Consensus 287 ~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~--~~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 287 ERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--PNVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp ECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC--CCSTTCCEEEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc--CccccccEEEEeHHHHHHHHh
Confidence 689999999999999999999999997655333332 345689999999999998875
No 80
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.45 E-value=0.00015 Score=63.53 Aligned_cols=57 Identities=9% Similarity=-0.119 Sum_probs=48.4
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhhc
Q 028085 2 IRGQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHARG 64 (214)
Q Consensus 2 ~rg~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~~ 64 (214)
+||.|+|.+|..+++++||.|+|+||+.. .+. .....+|+++|+.++|+.|++++..
T Consensus 290 ~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~--~~~----~~~~~~P~~~v~~~~g~~i~~yi~s 346 (649)
T 3i6s_A 290 DDNGDFSDQMRIITRARLKAAIFISEDPG--VFR----SATFPNPGVVVNKKEGKQVINYVKN 346 (649)
T ss_dssp CCCSCHHHHHHHHHHHTCSEEEEECCCGG--GGG----CCCCCSCEEEECHHHHHHHHHHHHT
T ss_pred eCCCccHHHHHHHHHhcCceEEEEecCcc--ccc----cccCcCCEEEEcHHHHHHHHHHHhc
Confidence 68999999999999999999999998662 221 2446899999999999999998864
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.33 E-value=0.0022 Score=42.05 Aligned_cols=34 Identities=18% Similarity=0.523 Sum_probs=26.4
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHH
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSW 183 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~W 183 (214)
+..|.||++++.......-+.|+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999987543334445899999999999983
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=38.13 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCC---CCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWG---TFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~---~~CP~Cr~~i 198 (214)
.+..|.||.+. ++-+.--.|...||..|+++.+..-- -.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44679999753 33332224899999999998875432 2799997643
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.84 E-value=0.003 Score=40.18 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCceEEecC-CCccChhhHHHHHHhCCCCccccccccccccC
Q 028085 149 RETLCSICLEDYREGENLRVLPC-RHEFHSSCVDSWLIRWGTFCPVCRHEIRRSTS 203 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C-~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~~ 203 (214)
+...|--|+-+.. -...| .|.+|..|+...|.... .||+|+.++.++-.
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSS-EETTTTEECCCCSC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhcc-CCcccCCcCCccee
Confidence 4567999997765 36667 69999999998876645 59999999876653
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.45 E-value=0.025 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.838 Sum_probs=22.6
Q ss_pred CCcccccccccccCCCceEEec---CCCccChhhHHHH
Q 028085 149 RETLCSICLEDYREGENLRVLP---CRHEFHSSCVDSW 183 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~---C~H~FH~~Ci~~W 183 (214)
.|..|.||-. +..++ .+| |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccc---eeccccccccccHhhcccc
Confidence 5678999963 33332 455 7899999999985
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.94 E-value=0.04 Score=34.99 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
.+..|.+|.+. ++-+.--.|.-.||..|+++=+..- ...||.|+..-
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 55689999964 3322222378889999997755331 12799997653
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.90 E-value=0.033 Score=32.82 Aligned_cols=45 Identities=24% Similarity=0.648 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
.+..|.+|.+. ++-+.--.|...||..|+.+=+... .-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999873 3322222488899999998754321 227999965
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.36 E-value=0.013 Score=33.88 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
.+..|.+|.+. ++-+.--.|...||..|+.+=+... .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 55689999874 3333333488899999998644321 226999964
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.29 E-value=0.019 Score=33.88 Aligned_cols=47 Identities=26% Similarity=0.613 Sum_probs=30.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
.+..|.+|-+. ++-+.--.|...||..|+.+-+... .-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999853 3322222378899999998644321 22799997653
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.04 E-value=0.015 Score=34.17 Aligned_cols=49 Identities=29% Similarity=0.678 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i~~ 200 (214)
.+..|.+|... ++-+.--.|...||..|+.+=+... .-.||.|+.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 45679999874 3333333488999999998644321 2279999776543
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.89 E-value=0.043 Score=30.96 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=28.3
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
.|.+|...-..++-+.--.|...||..|+++=+... .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888764433322223488899999997533221 226999965
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=91.77 E-value=0.033 Score=33.30 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=33.0
Q ss_pred CCcccccccccccC-CCceEEe-cCCCccChhhHHHHHHh------CCCCcccccccc
Q 028085 149 RETLCSICLEDYRE-GENLRVL-PCRHEFHSSCVDSWLIR------WGTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~-~~~~~~l-~C~H~FH~~Ci~~Wl~~------~~~~CP~Cr~~i 198 (214)
.+..|.+|...... ++.+..- .|.-.||..|+.+=+.. ..-.||.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 55789999987533 2233333 38899999999864321 233799997643
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.19 E-value=0.059 Score=31.95 Aligned_cols=49 Identities=29% Similarity=0.505 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHh----CCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR----WGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~----~~~~CP~Cr~~ 197 (214)
++..|++|...+.+++..+.- .|..=||..|+.--... ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456799999988655444333 37888999998643221 23379999764
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.04 E-value=0.049 Score=36.23 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHh---CCCCccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR---WGTFCPVCR 195 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~---~~~~CP~Cr 195 (214)
.++.|.+|.+.-...+-+.--.|+..||..|+...+.. ....||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999887433322444459999999999887642 122577664
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.01 E-value=0.035 Score=40.49 Aligned_cols=47 Identities=32% Similarity=0.632 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
.++.|.+|.+. |+-+..=.|.-.||..|+.+-+... ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 4322222388999999998766432 22799998743
No 95
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.74 E-value=0.044 Score=33.70 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=33.3
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---CCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---GTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i~~ 200 (214)
....|.+|-.... ++.+..- .|.--||..|+..-.... ...||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3456999987754 3333333 388889999997644321 2379999877643
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.57 E-value=0.047 Score=40.64 Aligned_cols=45 Identities=29% Similarity=0.718 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---CCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---GTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~ 197 (214)
.++.|.+|.+. + .+..- .|...||..|+.+-+... ...||.|+..
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45679999743 3 33222 288899999998766432 2279999764
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=90.12 E-value=0.093 Score=33.37 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=31.7
Q ss_pred CCccccccccccc-CCCceEEec-CCCccChhhHHHHHHhC-CCCcccccccc
Q 028085 149 RETLCSICLEDYR-EGENLRVLP-CRHEFHSSCVDSWLIRW-GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~-~~~~~~~l~-C~H~FH~~Ci~~Wl~~~-~~~CP~Cr~~i 198 (214)
.+..|.||.+.-. +++.+..-. |.-.||..|+..-+.-. .-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 5578999997642 222333333 77889999997633221 22799997654
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.11 E-value=0.32 Score=32.32 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=29.0
Q ss_pred Cccccccccccc-----CCCceEE-ecCCCccChhhHHH------HHHhCCCCccccc
Q 028085 150 ETLCSICLEDYR-----EGENLRV-LPCRHEFHSSCVDS------WLIRWGTFCPVCR 195 (214)
Q Consensus 150 ~~~C~ICl~~~~-----~~~~~~~-l~C~H~FH~~Ci~~------Wl~~~~~~CP~Cr 195 (214)
...|.+|+..-. .++++.. -.|+..||..|+.. -+....-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457999997631 2223333 34999999999953 2333344688885
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.85 E-value=0.059 Score=32.25 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~ 197 (214)
.+..|.+|.+. ++-+.-=.|...||..|+.+=+... .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 55689999864 3322222488899999998644321 2279999764
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=89.44 E-value=0.088 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=31.7
Q ss_pred CCcccccccccc-cCCCceEEe-cCCCccChhhHHHHHHhC-CCCccccccc
Q 028085 149 RETLCSICLEDY-REGENLRVL-PCRHEFHSSCVDSWLIRW-GTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~-~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~-~~~CP~Cr~~ 197 (214)
.+..|.||.+.- .+++.+..- .|.-.||..|+..-..-. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 556899998764 233343333 388899999997532211 2279999764
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.16 E-value=0.081 Score=33.64 Aligned_cols=50 Identities=18% Similarity=0.519 Sum_probs=33.5
Q ss_pred CcccccccccccC-CCceEEe-cCCCccChhhHHHHHHh-------CCCCccccccccc
Q 028085 150 ETLCSICLEDYRE-GENLRVL-PCRHEFHSSCVDSWLIR-------WGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~-~~~~~~l-~C~H~FH~~Ci~~Wl~~-------~~~~CP~Cr~~i~ 199 (214)
+..|.+|...-.. ++.+..- .|...||..|+.+=+.. ....||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999976432 2233333 38999999999876542 2237999977554
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.71 E-value=0.12 Score=33.58 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=28.7
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhC--CCCcccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW--GTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~--~~~CP~Cr~ 196 (214)
...| ||-.....+.-+.-=.|.--||..|+..=+..- ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 898776555322222388899999986522111 127999963
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.62 E-value=0.18 Score=29.33 Aligned_cols=43 Identities=21% Similarity=0.531 Sum_probs=29.0
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVC 194 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~C 194 (214)
..|--|...+.+....+--.|++.|+-+| |..+-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999986442222334999999999 45543333369988
No 104
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.89 E-value=0.2 Score=36.47 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=32.3
Q ss_pred cccccccccccCCCc---eEEec-CCCccChhhHHHH------HH----hCCCCccccccc
Q 028085 151 TLCSICLEDYREGEN---LRVLP-CRHEFHSSCVDSW------LI----RWGTFCPVCRHE 197 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~---~~~l~-C~H~FH~~Ci~~W------l~----~~~~~CP~Cr~~ 197 (214)
..|+||...|.+++. ...-. |..=||..|..-= +. .....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999988862 44443 8889999998431 11 013469999774
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.69 E-value=0.13 Score=34.17 Aligned_cols=45 Identities=31% Similarity=0.702 Sum_probs=29.2
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---CCCcccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
.|.+|.+.-.+++++..- .|...||..|+++-|..- .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333344333 389999999997655332 127999974
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.55 E-value=0.22 Score=33.20 Aligned_cols=45 Identities=22% Similarity=0.519 Sum_probs=28.2
Q ss_pred cccccccccccC------CCc-eEEecCCCccChhhHHHHH------HhCCCCccccc
Q 028085 151 TLCSICLEDYRE------GEN-LRVLPCRHEFHSSCVDSWL------IRWGTFCPVCR 195 (214)
Q Consensus 151 ~~C~ICl~~~~~------~~~-~~~l~C~H~FH~~Ci~~Wl------~~~~~~CP~Cr 195 (214)
+.|.+|+..-.. +++ +.-..|+..||..|+.... ....-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 469999976421 123 3333489999999998652 23333677773
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=85.62 E-value=0.11 Score=38.15 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=30.1
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
++.|.+|.+. ++-+..-.|...||..|+.+=+... ...||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3579999854 4333333478899999997644321 22799998653
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.83 E-value=0.082 Score=33.91 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---CCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---GTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~ 197 (214)
.+..|.||...-..+ .+..- .|...||..|+.+=+..- .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445799999775333 33333 389999999997533221 2269999764
No 109
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=84.56 E-value=1.7 Score=37.68 Aligned_cols=52 Identities=6% Similarity=-0.023 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHcCCcEEEEEeCCCCCCeeeeeCCCCCeeeEEEEchhhHHHHHHHhh
Q 028085 5 QCNFSYKIQNAQAAGYDAAIVYALRKKSPLIYMTYPEGANVPAFYVTLETGAYLKEHAR 63 (214)
Q Consensus 5 ~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~m~~~~~~~Ip~v~v~~~~g~~L~~~~~ 63 (214)
.+.+..|..+++.+||.++|++++..+. .....+|+++++..+|..+..+..
T Consensus 288 ~~~~~~~~~~~~~~Ga~gvi~~~~~~~~-------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 288 EASFGPHEFFKSLDGAAGVLMTSNTRDY-------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp SSCCCHHHHHHHHTTCSEEEEECSCCSS-------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred ecCCChhHHhhhhcceeEEEEEecCCCc-------ccccccceEEECHHHHHHHHHHHh
Confidence 4678889999999999999999865431 133578999999999999988664
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.45 E-value=0.2 Score=32.90 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=33.6
Q ss_pred CcccccccccccCCCceEEe--cCCCccChhhHHHHHH---------hCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVL--PCRHEFHSSCVDSWLI---------RWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~~Wl~---------~~~~~CP~Cr~~i~ 199 (214)
...|.+|...+.+++....- .|.-=||..|+.-=-. .....||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35799999998776555544 3777799999852110 02237999987543
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.28 E-value=0.74 Score=31.93 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHH----------hCCCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLI----------RWGTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~----------~~~~~CP~Cr~ 196 (214)
.++.|.+|-+. |+-+--=.|-.+||..|+++=+. .....||+|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 56789999874 32222224888999999997652 11237999974
No 112
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.06 E-value=0.62 Score=42.30 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCceEEecCC-CccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCR-HEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~-H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
++..|+|-++-+. .++.+|-| +.|-+..|.+|+..+. +||.=|.++....
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCccc
Confidence 5578999999999 45899997 5899999999998755 5999999887553
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.75 E-value=1.4 Score=29.96 Aligned_cols=45 Identities=29% Similarity=0.590 Sum_probs=30.0
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHH------Hh----CCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWL------IR----WGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl------~~----~~~~CP~Cr~~ 197 (214)
.++.|.+|-+- + ++..- .|-.+||.+|+.+-+ +. ..-.|++|+..
T Consensus 56 ~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 55679999964 3 33222 388999999999742 21 12379999654
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=82.12 E-value=1.1 Score=29.37 Aligned_cols=47 Identities=26% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCceEEec---CCCccChhhHHHHHHhC---CCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP---CRHEFHSSCVDSWLIRW---GTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~---C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i~~~ 201 (214)
.++.|.+|.+ .+ ++..-. |-..||..|+. |... .-.||.|+..+..+
T Consensus 14 ~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 14 HEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 5567999983 23 443433 77899999997 4321 12699887655433
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.67 E-value=0.14 Score=31.61 Aligned_cols=44 Identities=20% Similarity=0.511 Sum_probs=28.2
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHh---C-CCCcccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR---W-GTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~---~-~~~CP~Cr~ 196 (214)
.|.+|...-..+ .+..- .|...||..|+++=|.. . .-.||.|+.
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688998653333 33333 38899999999854432 1 226999964
No 116
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.60 E-value=3.8 Score=25.71 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCcccccccccccCCC--ceEEe--cCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGE--NLRVL--PCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~--~~~~l--~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
....|-||-++.-... ++... .|+--.|+.|++-=.+..+..||.|+....+.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccccc
Confidence 3458999999954321 33222 377778999998766655557999999886533
No 117
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.41 E-value=0.41 Score=34.31 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHH----hCCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLI----RWGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~----~~~~~CP~Cr~~ 197 (214)
....| +|...+.++.....- .|..-||..|+.--.. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44679 999886544444333 3888899999953221 123379999764
No 118
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.27 E-value=4.4 Score=24.89 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=33.9
Q ss_pred CCcccccccccccCCCceEEec--CCCccChhhHHHHHHhCCC----Ccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP--CRHEFHSSCVDSWLIRWGT----FCPVC 194 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~--C~H~FH~~Ci~~Wl~~~~~----~CP~C 194 (214)
....|.+|-+.+++.+ .++-| =+|-||-.|-...++.+.. .||-=
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 4568999999999884 34555 3899999999999987532 46654
No 119
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.95 E-value=0.85 Score=27.83 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=29.2
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHH--------hCCCCcccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLI--------RWGTFCPVCRHEI 198 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~--------~~~~~CP~Cr~~i 198 (214)
...| +|-..+..+.-+.--.|..=||..|+.--.. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3457 8988765432222224888899999843211 1244799997643
No 120
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.36 E-value=0.14 Score=31.62 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=26.2
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---C-CCcccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---G-TFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~-~~CP~Cr~ 196 (214)
.|.+|-..-..+ ++..- .|...||..|+++-|... . -.||.|++
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666553322 33222 388899999998655431 2 36999975
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.86 E-value=1.7 Score=26.29 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=22.9
Q ss_pred cccccccccccCCCceEEe-cCCCccChhhHHH
Q 028085 151 TLCSICLEDYREGENLRVL-PCRHEFHSSCVDS 182 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~ 182 (214)
..|.+|-..|..-..-..- .||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999998754322233 3999999999743
No 122
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.48 E-value=2.2 Score=26.21 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHh----CCCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR----WGTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~----~~~~CP~Cr~~i 198 (214)
....| +|-..+.++...+.- .|..=||..|+.--... ....||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34557 898887544343333 38877999998532221 223799998754
No 123
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.34 E-value=2.4 Score=34.16 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=29.4
Q ss_pred cccccccccccCCCceEEecCCCc--cChhhHHHHHHhC-CCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHE--FHSSCVDSWLIRW-GTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~--FH~~Ci~~Wl~~~-~~~CP~Cr~~i~ 199 (214)
..|++=...+. ..++-..|.|. |=..=+....... ...||+|...+.
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 57998777765 45677789997 4333232222222 237999988763
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=77.19 E-value=2.1 Score=27.06 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=31.3
Q ss_pred cccccccccccCCCceEEe-cCCCccChhhHHHHHHh-----CCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR-----WGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~-----~~~~CP~Cr~~i~ 199 (214)
..|.+|...|..-..-..- .||++||..|...+... ....|-.|-..+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 5799999998754322233 49999999998764321 1113777765554
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.77 E-value=0.18 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.402 Sum_probs=30.8
Q ss_pred ccccccccccCCCceEEecCCCccChhhHHHHHHhC---CCCcccccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRW---GTFCPVCRHEIRR 200 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i~~ 200 (214)
.|.+|-..-..++-+.--.|...||..|+.+=+... .-.||.|+..+..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 588887764444322222489999999998633221 2269999776543
No 126
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.57 E-value=1.1 Score=28.67 Aligned_cols=13 Identities=31% Similarity=1.109 Sum_probs=11.3
Q ss_pred ccChhhHHHHHHh
Q 028085 174 EFHSSCVDSWLIR 186 (214)
Q Consensus 174 ~FH~~Ci~~Wl~~ 186 (214)
-||..|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 127
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=76.41 E-value=1.1 Score=28.69 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=11.4
Q ss_pred ccChhhHHHHHHh
Q 028085 174 EFHSSCVDSWLIR 186 (214)
Q Consensus 174 ~FH~~Ci~~Wl~~ 186 (214)
-||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999975
No 128
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.33 E-value=2.3 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHH
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSW 183 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~W 183 (214)
+...|.+|-..|..-..-..- .||++|+.+|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999998755322333 39999999997653
No 129
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.25 E-value=0.98 Score=25.32 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred ccccccccccCCCceEEe--cCCCccChhhHHHHHH---hCCCCccccc
Q 028085 152 LCSICLEDYREGENLRVL--PCRHEFHSSCVDSWLI---RWGTFCPVCR 195 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~~Wl~---~~~~~CP~Cr 195 (214)
.|.+|...+.+++..+.- .|.-=||..|+.--.. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888888655444333 3776799999753221 2344799885
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.15 E-value=1.8 Score=29.23 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=23.4
Q ss_pred cccccccccccCCCceEEe-cCCCccChhhHHH
Q 028085 151 TLCSICLEDYREGENLRVL-PCRHEFHSSCVDS 182 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~ 182 (214)
..|.+|-..|..-..-..- .||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 5799999998754322333 4999999999654
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=75.32 E-value=2.6 Score=26.56 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=34.6
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHH-------hCCCCcccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLI-------RWGTFCPVCRHEIRRST 202 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~-------~~~~~CP~Cr~~i~~~~ 202 (214)
....|.+|-..|..-..-..- .||++||..|....+. ..+ .|-.|-..+....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~R-VC~~C~~~l~~~~ 68 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQK-VCKQCHTILTRGS 68 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEE-ECHHHHHHHHHCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCE-ECHHHHHHHHhcc
Confidence 345799999998754322222 3999999999765321 112 4888877665443
No 132
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=75.23 E-value=7.7 Score=20.90 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 028085 99 PLLFWFARK 107 (214)
Q Consensus 99 ~~~~~~~~~ 107 (214)
+..+++.++
T Consensus 28 ~~~~~~~RR 36 (44)
T 2l2t_A 28 LTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 334444444
No 133
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.22 E-value=3.1 Score=33.44 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=30.2
Q ss_pred cccccccccccCCCceEEecCCCc--cChhhHHHHHHhCC-CCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHE--FHSSCVDSWLIRWG-TFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~--FH~~Ci~~Wl~~~~-~~CP~Cr~~i~ 199 (214)
..|++=...+. ..+|-..|.|. |=..=+........ ..||+|.+.+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 47998777765 45677789997 44433333333222 38999998774
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.02 E-value=2.4 Score=26.21 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=31.1
Q ss_pred CcccccccccccCCCceEEe-cCCCccChhhHHHHHHh---CCC--Cccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR---WGT--FCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~---~~~--~CP~Cr~~i~ 199 (214)
...|.+|-..|..-..-..- .||++|+..|....+.. ... .|-.|-..+.
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 35799999999754322233 39999999997643211 011 3777755554
No 135
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=74.88 E-value=0.29 Score=29.55 Aligned_cols=44 Identities=27% Similarity=0.610 Sum_probs=26.6
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHhC----CCCcccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW----GTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~----~~~CP~Cr~ 196 (214)
.|.+|...-..+ .+..- .|...||..|+++=|... .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543222 33333 388999999998544321 226999964
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.39 E-value=0.41 Score=32.22 Aligned_cols=49 Identities=16% Similarity=0.362 Sum_probs=31.0
Q ss_pred CcccccccccccCCCceEEe-cCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
...|..|-..|..-..-..- .||.+||..|........+. |-.|-..+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRV-C~~C~~~~~ 68 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRL-CLLCQRFRA 68 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCE-EHHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceE-CHHHHHHHh
Confidence 35799999998743222233 49999999998766544454 888865443
No 137
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=73.49 E-value=5.2 Score=21.57 Aligned_cols=9 Identities=22% Similarity=0.146 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 028085 99 PLLFWFARK 107 (214)
Q Consensus 99 ~~~~~~~~~ 107 (214)
++.+++.++
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 344444444
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.40 E-value=1.9 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.429 Sum_probs=24.1
Q ss_pred CcccccccccccCCCceEEe-cCCCccChhhHHH
Q 028085 150 ETLCSICLEDYREGENLRVL-PCRHEFHSSCVDS 182 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~ 182 (214)
+..|.+|-..|.--..-..- .||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899999998744322333 3999999999754
No 139
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.79 E-value=3 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCcccccccccccCCCceEEe--cCCCccChhhHH
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHEFHSSCVD 181 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~ 181 (214)
....|++|...+.+++..+.- .|.-=||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 446799999998877655544 478789999974
No 140
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.63 E-value=0.74 Score=34.52 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=25.1
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHh---C-CCCcccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR---W-GTFCPVCRH 196 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~---~-~~~CP~Cr~ 196 (214)
.|.+|...-..+ .+..- .|...||..|+++=|.. . .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887653333 33232 38899999999854432 1 226999965
No 141
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.85 E-value=3.1 Score=25.82 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=23.7
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHH
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDS 182 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~ 182 (214)
....|.+|-..|..-..-..- .||.+|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345799999998644322223 3999999999654
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.81 E-value=0.42 Score=31.60 Aligned_cols=45 Identities=22% Similarity=0.559 Sum_probs=27.7
Q ss_pred ccccccccccCCCceEEe-cCCCccChhhHHHHHHhC---CCCccccccc
Q 028085 152 LCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW---GTFCPVCRHE 197 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~---~~~CP~Cr~~ 197 (214)
.|.+|-..-.+. .+..- .|...||..|+++=+... .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 467777654332 22222 388999999998644321 2269999654
No 143
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.70 E-value=1.5 Score=26.45 Aligned_cols=45 Identities=36% Similarity=0.693 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEEe-c--CC-CccChhhHHHHHHhC---CCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-P--CR-HEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
...-| +|-.... ++ +..- . |. .-||..|+. |... ...||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 7987543 42 2221 2 44 579999997 3321 22799997653
No 144
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=71.63 E-value=0.99 Score=22.32 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=19.4
Q ss_pred cccccccccccCCCceEEecCCCccChhhH
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCV 180 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci 180 (214)
..|+.|-...-..++ ...=|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGGC
T ss_pred CcCCccCCEEeccee--EEECCeEecccCC
Confidence 368889887765543 3345788999884
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.18 E-value=2.3 Score=31.85 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHhC-------CCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIRW-------GTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~~-------~~~CP~Cr~~i~ 199 (214)
.+..|.+|-..|.--..-..- .||++||..|........ ...|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 345899999998754322333 399999999976543210 013777765554
No 146
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.58 E-value=1.8 Score=27.48 Aligned_cols=46 Identities=35% Similarity=0.678 Sum_probs=26.9
Q ss_pred CCcccccccccccCCCceEEec--CC-CccChhhHHHHHHhC---CCCcccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP--CR-HEFHSSCVDSWLIRW---GTFCPVCRHEI 198 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~--C~-H~FH~~Ci~~Wl~~~---~~~CP~Cr~~i 198 (214)
...-| +|-.... ++-+.-=. |. .-||..|+. |... ...||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 9987643 32211112 44 579999997 3221 22799997643
No 147
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.55 E-value=0.78 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHH---hCCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLI---RWGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~---~~~~~CP~Cr~~ 197 (214)
....| ||-....+++....- .|..=||..|+.---. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 698876555433333 3777799999864211 112379999764
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.42 E-value=2.1 Score=25.77 Aligned_cols=40 Identities=18% Similarity=0.470 Sum_probs=29.7
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...|+.|-..+..++.+ ..-+..||.+|+ .|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC---------CCCCCCCccCC
Confidence 45799999998877643 345788998884 38888887763
No 149
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=69.72 E-value=11 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 028085 86 IVWGMLLLFVISIPLLFWFARKLY 109 (214)
Q Consensus 86 ~~~~~l~~~i~~~~~~~~~~~~~~ 109 (214)
..++++ ++++..+.++++.+|.+
T Consensus 17 ~vVGvl-l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 17 AVVGIL-LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHhheehhh
Confidence 334433 33344444444555443
No 150
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=69.10 E-value=1.2 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=24.3
Q ss_pred CcccccccccccCCCceEEecCCCccCh-hhHHHHHHhCCCCcccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHS-SCVDSWLIRWGTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~-~Ci~~Wl~~~~~~CP~Cr~ 196 (214)
-..|..|-..+..+. ....=+..||. .|..+- ....|--|..
T Consensus 27 CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~---f~~~C~~C~~ 69 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM---FGPKGFGRGG 69 (76)
T ss_dssp TCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH---SSCCCSSCCC
T ss_pred CCCccccCccCCCCc--eECcCCeEeeCHHHHHHH---hCccCCCcCC
Confidence 356777777776552 23345667777 476542 2334777754
No 151
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.28 E-value=2.3 Score=26.04 Aligned_cols=40 Identities=25% Similarity=0.629 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
....|+-|-..+.+++.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC---------CcCcCCCCcC
Confidence 34579999999887754433 4778998884 3888888775
No 152
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.03 E-value=1.9 Score=26.47 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCceEEe--cCCCccChhhHHHHHHh--------CCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHEFHSSCVDSWLIR--------WGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~~Wl~~--------~~~~CP~Cr~~ 197 (214)
....| ||-.....+.-|.-= .|..=||..|+.---.. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34568 788875444322222 48888999998531111 13379999764
No 153
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.23 E-value=1.2 Score=26.52 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=28.0
Q ss_pred CCcccccccccccCCCceEEe-cCCCccChhhHHHHHHh--CCCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR--WGTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~--~~~~CP~Cr~ 196 (214)
+...| ||-..+. ++....- .|..=||..|+.---.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44568 9987765 3223333 38888999998642210 1227999965
No 154
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.99 E-value=5 Score=24.50 Aligned_cols=42 Identities=31% Similarity=0.554 Sum_probs=30.0
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+-|-..+...+.+. .-+..||.+|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 4467999999987665443 45778999984 377787776543
No 155
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.18 E-value=3.3 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=29.9
Q ss_pred CCccccccccccc-CCC-ceEEecCCCccChhhHHHHHHhC-C--CCcccccc
Q 028085 149 RETLCSICLEDYR-EGE-NLRVLPCRHEFHSSCVDSWLIRW-G--TFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~-~~~-~~~~l~C~H~FH~~Ci~~Wl~~~-~--~~CP~Cr~ 196 (214)
++..|++|...|. ... ...-..|+|.+|..|-..--... . ..|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5678999999983 222 33334599999999964311101 1 15888865
No 156
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.07 E-value=0.9 Score=29.59 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=14.3
Q ss_pred EecCCCccChhhHHHHHHhCCCCccccccc
Q 028085 168 VLPCRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 168 ~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
...||+.|. +. + .....||.|++.
T Consensus 70 C~~CG~~F~----~~-~-~kPsrCP~CkSe 93 (105)
T 2gmg_A 70 CRKCGFVFK----AE-I-NIPSRCPKCKSE 93 (105)
T ss_dssp BTTTCCBCC----CC-S-SCCSSCSSSCCC
T ss_pred hhhCcCeec----cc-C-CCCCCCcCCCCC
Confidence 445899991 11 1 112369999875
No 157
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.73 E-value=7.7 Score=23.07 Aligned_cols=43 Identities=19% Similarity=0.542 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
....|+-|-..+..++.+ ...-+..||.+|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTC-EEETTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceE-EEeCccEeccccC---------eECCCCCCCCCC
Confidence 345799999998765443 2234778998885 277887777543
No 158
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.36 E-value=5.9 Score=23.31 Aligned_cols=40 Identities=18% Similarity=0.464 Sum_probs=28.2
Q ss_pred CcccccccccccC--CCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYRE--GENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~--~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
...|+-|-..+.. +++ .+..-+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC---------EeccCCCcCC
Confidence 3579999998885 323 23346788998885 3888888775
No 159
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.90 E-value=2.1 Score=21.73 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=6.1
Q ss_pred Cccccccccc
Q 028085 190 FCPVCRHEIR 199 (214)
Q Consensus 190 ~CP~Cr~~i~ 199 (214)
.||+|...+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 4777766554
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.55 E-value=6.5 Score=23.14 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=24.6
Q ss_pred CCcccccccccccCCCceEEecC-CCccChhhHHHH
Q 028085 149 RETLCSICLEDYREGENLRVLPC-RHEFHSSCVDSW 183 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C-~H~FH~~Ci~~W 183 (214)
...-|.||.++ ..++-+-| +-+||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34579999988 25788889 889999998764
No 161
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.49 E-value=1.7 Score=25.18 Aligned_cols=20 Identities=25% Similarity=0.684 Sum_probs=12.5
Q ss_pred HHHhCCCCcccccccccccc
Q 028085 183 WLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 183 Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
|+..+...||.|+..|....
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 44333335999988886543
No 162
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=58.01 E-value=5.3 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.517 Sum_probs=30.5
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
...|+-|-..+..++.+. ..=+..||..|+ .|-.|+.++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC---------cccCCCCCCCCC
Confidence 457999999988776432 245778999886 388888877544
No 163
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.90 E-value=7.3 Score=23.54 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=28.5
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+.|-..+..++.+ +..=+..||.+|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECccccccccC---------chhhCCCccCC
Confidence 4799999988876543 3335788998885 27788777754
No 164
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=54.11 E-value=10 Score=26.70 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCceEEec---CCCccChhhHHHHHHhC---------CCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVLP---CRHEFHSSCVDSWLIRW---------GTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~---C~H~FH~~Ci~~Wl~~~---------~~~CP~Cr~ 196 (214)
.+..|.+|-+. .++..-. |...||.+||+.++-.. .-.|=+|.-
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 55679999864 2444433 88999999999987432 115888853
No 165
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.77 E-value=6.7 Score=22.99 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=27.0
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+-|-..+..++. .+..-+..||.+|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC---------eECCCCCcCCC
Confidence 468888888876533 23345778888874 27777777653
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=53.56 E-value=3.6 Score=25.01 Aligned_cols=40 Identities=28% Similarity=0.609 Sum_probs=25.7
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...|+.|-..+.+++. +..-+..||.+|+ .|-.|+.+|..
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC---------ccCCCCCCCCC
Confidence 3568888888766653 3335777887774 27777776643
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.51 E-value=6.3 Score=23.10 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=26.4
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+.|-..+.+++.+ +..-+..||.+|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC---------cccccCCccCC
Confidence 4688888888765432 2335677888775 27777776643
No 168
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.38 E-value=2.3 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=7.5
Q ss_pred Ccccccccccc
Q 028085 190 FCPVCRHEIRR 200 (214)
Q Consensus 190 ~CP~Cr~~i~~ 200 (214)
.||.|+..+..
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 48888876543
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.14 E-value=6.9 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=26.9
Q ss_pred cccccccccccC--CCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYRE--GENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~--~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+.+ +++ .+..-+..||.+|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC---------ChhhCCCcCC
Confidence 469999988875 222 34446778998885 2778877764
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.77 E-value=6.8 Score=27.40 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=30.7
Q ss_pred CCccccccccccc--CCCceEEecCCCccChhhHHHHHHhCCC-Ccccccc
Q 028085 149 RETLCSICLEDYR--EGENLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~--~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~ 196 (214)
++..|++|...|. .+-......|+|.+|..|- .|...... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4578999999864 2323344459999999997 34432221 6888865
No 171
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.70 E-value=8.6 Score=22.51 Aligned_cols=38 Identities=29% Similarity=0.635 Sum_probs=21.2
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i 198 (214)
..|+-|-..+...+. .+..=+..||.+|+ .|-.|+.+|
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGCF---------VCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTTC---------BCSSSCCBC
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccCC---------cccccCCcC
Confidence 457777766654322 22234566776663 266666665
No 172
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.65 E-value=10 Score=21.98 Aligned_cols=37 Identities=24% Similarity=0.653 Sum_probs=24.8
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+..+ .+..-+..||.+|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKECF---------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTTS---------BCSSSCCBCT
T ss_pred CCCcccCCeeccc---eEEECccccCCCCC---------ccCCCCCcCC
Confidence 4688888887643 23445778888774 2777777764
No 173
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.27 E-value=3 Score=34.24 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred CcccccccccccCCCc-eEEecCCCccChhhHHHHHHhC----C--CCcccccccc
Q 028085 150 ETLCSICLEDYREGEN-LRVLPCRHEFHSSCVDSWLIRW----G--TFCPVCRHEI 198 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~-~~~l~C~H~FH~~Ci~~Wl~~~----~--~~CP~Cr~~i 198 (214)
...|..|-..|..-.. -..-.||++||..|....+... . ..|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999999874321 1223499999999997664211 1 1377775554
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.13 E-value=13 Score=23.03 Aligned_cols=38 Identities=26% Similarity=0.606 Sum_probs=23.4
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+...+. +..-+..||.+|+ .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~--v~a~~~~~H~~CF---------~C~~C~~~L~ 53 (91)
T 2d8y_A 16 ETCVECQKTVYPMER--LLANQQVFHISCF---------RCSYCNNKLS 53 (91)
T ss_dssp CBCTTTCCBCCTTSE--EECSSSEEETTTC---------BCTTTCCBCC
T ss_pred CcCccCCCccCCcee--EEECCCEECCCCC---------eeCCCCCCCC
Confidence 467888777765543 2345667777774 2556655554
No 175
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.00 E-value=9.4 Score=23.61 Aligned_cols=40 Identities=20% Similarity=0.532 Sum_probs=28.6
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
....|+-|-..+. ++ .+..-+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GP--FLVALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SC--EEEETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ce--EEEECCccccccCC---------ccCCCCCCCCC
Confidence 3457999999885 32 33456889999885 38888887753
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.53 E-value=7.4 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.462 Sum_probs=25.2
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...|+-|-..+.+ +. +..-+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKAMNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEETTEEECTTTS---------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eE--EEECcccccccCC---------EeCCCCCcCCC
Confidence 3568888887763 22 3334677888875 27777776654
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.09 E-value=8.1 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
....|+-|-..+... .+..-+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC---------eeCCCCCCCC
Confidence 345799999988743 34446889999985 2888877764
No 178
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=50.11 E-value=1.3 Score=26.43 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=26.1
Q ss_pred CcccccccccccCCCceEEec---CCCccChhhHHHHH---Hh----CCCCcccccc
Q 028085 150 ETLCSICLEDYREGENLRVLP---CRHEFHSSCVDSWL---IR----WGTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~---C~H~FH~~Ci~~Wl---~~----~~~~CP~Cr~ 196 (214)
...| ||-.....+ ....-- |..=||..|+.--- .. ....||.||.
T Consensus 10 ~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 787665555 333442 77679999973100 00 1236999975
No 179
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=49.87 E-value=0.91 Score=26.12 Aligned_cols=48 Identities=23% Similarity=0.611 Sum_probs=26.7
Q ss_pred CCcccccccc-cccCCCceEEecCCCccChhhHHHHHHhCCC---Ccccccc
Q 028085 149 RETLCSICLE-DYREGENLRVLPCRHEFHSSCVDSWLIRWGT---FCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~-~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~---~CP~Cr~ 196 (214)
+...|.||+- .|.++---.--.|.-.|+..|--.|-...+. .|-+||+
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 5578999985 4665532222336666666665554433222 4666654
No 180
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=48.66 E-value=1.1 Score=27.61 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=13.0
Q ss_pred cCCCccChhhHHHHH
Q 028085 170 PCRHEFHSSCVDSWL 184 (214)
Q Consensus 170 ~C~H~FH~~Ci~~Wl 184 (214)
.|+|.||..|-..|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999998873
No 181
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.38 E-value=6.4 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.653 Sum_probs=15.5
Q ss_pred EEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 167 RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 167 ~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
+...|||.|-.. .....||.|.+++.
T Consensus 134 ~C~~Cg~~~~~~-------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL-------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC-------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC-------CCCCcCCCCCCcce
Confidence 344477777543 11225999988753
No 182
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.85 E-value=10 Score=21.94 Aligned_cols=37 Identities=19% Similarity=0.593 Sum_probs=23.8
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+..+ . +..-+..||.+|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSG-G--ITYQDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTT-C--EEETTEEECTTTT---------BCTTTCCBCT
T ss_pred CCCcccCCEeCcc-e--EEECccccccCcC---------EECCCCCCCC
Confidence 4688888777632 2 2334677887774 2777777764
No 183
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=46.01 E-value=2.4 Score=24.41 Aligned_cols=43 Identities=35% Similarity=0.706 Sum_probs=25.6
Q ss_pred CCcccccccccccCCCceEEe-c--CC-CccChhhHHHHHHhC---CCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-P--CR-HEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
+..-| +|-.... + .+..- . |. .-||..|+. +... ...||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34457 8987642 3 22222 2 54 589999997 3222 227999965
No 184
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.90 E-value=9.1 Score=21.97 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=27.6
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...|+-|-..+. ++ .+..-+..||.+|+ .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCcC---------EECCCCCCCCC
Confidence 357999988887 32 34446788998884 38888887753
No 185
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.06 E-value=2.7 Score=24.31 Aligned_cols=42 Identities=33% Similarity=0.703 Sum_probs=24.8
Q ss_pred CcccccccccccCCCceEEe-c--CC-CccChhhHHHHHHhC---CCCcccccc
Q 028085 150 ETLCSICLEDYREGENLRVL-P--CR-HEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~--C~-H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
..-| ||-.... + .+..- . |. .-||..|+. +... ...||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3457 8987642 3 22222 2 44 579999997 3321 227999964
No 186
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=43.72 E-value=2.9 Score=23.28 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=23.3
Q ss_pred cccccccCCCceEEe-cCCCccChhhHHHHHHh--CCCCcccccc
Q 028085 155 ICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR--WGTFCPVCRH 196 (214)
Q Consensus 155 ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~--~~~~CP~Cr~ 196 (214)
||-.....+ ....- .|+.=||..|+.---.. ....||.|+.
T Consensus 8 ~C~~~~~~~-~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTC-CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCC-CEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 566554422 22222 37777999998532211 1237999975
No 187
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.18 E-value=18 Score=22.25 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 149 RETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
....|+-|-..+... .+..-+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred cCCCcccCCCEeccc---EEEECCceECccCC---------EecCCCCCCCC
Confidence 345799999988742 23446789999885 28888887753
No 188
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.43 E-value=15 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.417 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
...|+-|-..+. ++. +..-+..||.+|+ .|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF---------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS---------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC---------EeCCCCCccCC
Confidence 357888888877 322 2335777888774 37777777653
No 189
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.95 E-value=3.3 Score=24.15 Aligned_cols=43 Identities=35% Similarity=0.681 Sum_probs=25.4
Q ss_pred CCcccccccccccCCCceEEe-c--CC-CccChhhHHHHHHhC---CCCcccccc
Q 028085 149 RETLCSICLEDYREGENLRVL-P--CR-HEFHSSCVDSWLIRW---GTFCPVCRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~FH~~Ci~~Wl~~~---~~~CP~Cr~ 196 (214)
+..-| +|-.... + .+..- . |. .-||..|+. |... ...||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34557 8987632 3 32222 2 44 789999997 2221 227999965
No 190
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.62 E-value=6.7 Score=23.39 Aligned_cols=14 Identities=0% Similarity=-0.211 Sum_probs=7.3
Q ss_pred CccccccccccccC
Q 028085 190 FCPVCRHEIRRSTS 203 (214)
Q Consensus 190 ~CP~Cr~~i~~~~~ 203 (214)
.||-|+....-.++
T Consensus 28 iC~~cg~~YPI~dG 41 (69)
T 2pk7_A 28 ISKGAGLAYPIRDG 41 (69)
T ss_dssp EETTTTEEEEEETT
T ss_pred EcCCCCcEecCcCC
Confidence 36666555544443
No 191
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.54 E-value=13 Score=22.34 Aligned_cols=37 Identities=32% Similarity=0.649 Sum_probs=25.3
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+. ++. +..-+..||.+|+ .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~-~~~--v~a~~~~wH~~CF---------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEV--VSALGKTYHPDCF---------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCC--EEETTEEECTTTS---------SCSSSCCCCC
T ss_pred CcCccccCEec-cce--EEECCceeCccCC---------ccccCCCCCC
Confidence 47999998887 322 3345788998885 2777776664
No 192
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=37.79 E-value=1 Score=20.36 Aligned_cols=12 Identities=33% Similarity=1.005 Sum_probs=8.5
Q ss_pred ccChhhHHHHHH
Q 028085 174 EFHSSCVDSWLI 185 (214)
Q Consensus 174 ~FH~~Ci~~Wl~ 185 (214)
.||+.|-++|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 377778777764
No 193
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=37.63 E-value=18 Score=18.38 Aligned_cols=8 Identities=0% Similarity=0.135 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 028085 100 LLFWFARK 107 (214)
Q Consensus 100 ~~~~~~~~ 107 (214)
.+.++.+|
T Consensus 26 ~~~~~iRR 33 (35)
T 1iij_A 26 VVGILIKR 33 (35)
T ss_dssp TTTHHHHH
T ss_pred HhheEEee
Confidence 33334443
No 194
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.09 E-value=21 Score=23.51 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=32.9
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
..|..|-..+.+........=+..||..|..+-+.... .|-.|..+|...
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCch
Confidence 47888888776311223344677899999887553222 499999988753
No 195
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.51 E-value=13 Score=24.64 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=29.2
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
...|+-|-..+.... ++..-+..||.+|+ .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc---------CcCcCCCccc
Confidence 357999999887553 23346888999994 3999988885
No 196
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.44 E-value=22 Score=28.88 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCcccccccccccCCCceEEe--cCCCccChhhHHHHHHh---------CCCCccccccc
Q 028085 149 RETLCSICLEDYREGENLRVL--PCRHEFHSSCVDSWLIR---------WGTFCPVCRHE 197 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l--~C~H~FH~~Ci~~Wl~~---------~~~~CP~Cr~~ 197 (214)
.+..|.+|-+. ++-+..= .|...||.+||+..+-. ..-.|=+|.-.
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 55679999864 3233333 58999999999998821 12268888543
No 197
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=36.30 E-value=39 Score=19.40 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=28.1
Q ss_pred CcccccccccccCCCceEEec-CCCccCh-hhHHHH
Q 028085 150 ETLCSICLEDYREGENLRVLP-CRHEFHS-SCVDSW 183 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~-C~H~FH~-~Ci~~W 183 (214)
...|+-|-..+..|+..+.-. .-|.||. .||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 357999999999998777776 8899985 788775
No 198
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.84 E-value=9.7 Score=17.71 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=6.5
Q ss_pred Cccccccccc
Q 028085 190 FCPVCRHEIR 199 (214)
Q Consensus 190 ~CP~Cr~~i~ 199 (214)
.||+|.+.++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4888866543
No 199
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.64 E-value=25 Score=23.23 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=23.3
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|..|-..+...+......=|..||..|..+-+.. +..|..|..+|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccC
Confidence 456666666543112223334556666666553311 103666666664
No 200
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=35.63 E-value=14 Score=26.59 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=14.5
Q ss_pred cccccccccccCCCceEEecCCCccChhh
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSC 179 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~C 179 (214)
..|+.|-..+.+++.+. .=+..||.+|
T Consensus 116 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVI--GAGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEE--ETTEEECTTT
T ss_pred CcCCCCCCEecCcEEEe--cCCCccchhc
Confidence 45666666665544332 2355566655
No 201
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=35.49 E-value=55 Score=19.91 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=17.1
Q ss_pred cccHHHHHHHHH---HcCCcEEEEEeCCCC
Q 028085 5 QCNFSYKIQNAQ---AAGYDAAIVYALRKK 31 (214)
Q Consensus 5 ~C~f~~K~~~a~---~~ga~aviv~~~~~~ 31 (214)
+.+..+|+.+.. ++| .+||+||..+.
T Consensus 33 E~sL~~kv~qv~~qL~~G-eavIvfse~~E 61 (78)
T 1y0n_A 33 ETPLDVRVERARHALRRG-EAVILFDPESQ 61 (78)
T ss_dssp -CCHHHHHHHHHHHHHTT-SEEEEECTTTC
T ss_pred cccHHHHHHHHHHHHHcC-CEEEEECCCCC
Confidence 467788866654 455 49999985543
No 202
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.32 E-value=15 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=14.6
Q ss_pred cccccccccccCCCceEEecCCCccChhhH
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCV 180 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci 180 (214)
..|+-|-..+... .+..-+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~---~v~a~~~~wH~~CF 32 (73)
T 1wig_A 6 SGCDSCEKYITGR---VLEAGEKHYHPSCA 32 (73)
T ss_dssp CSCSSSCCCCSSC---CBCCSSCCBCTTTS
T ss_pred CCcccCCCEecCe---eEEeCCCCCCCCcC
Confidence 3566676666531 12234566776663
No 203
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.70 E-value=19 Score=21.48 Aligned_cols=37 Identities=22% Similarity=0.619 Sum_probs=24.4
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+..+ .+..=+..||.+|+ .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC---------CcccCCCcCC
Confidence 4688888777643 23345777888774 2777777764
No 204
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.26 E-value=13 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.536 Sum_probs=16.8
Q ss_pred ceEEecCCCccChhhHHHHHHhCCC-Ccccccccc
Q 028085 165 NLRVLPCRHEFHSSCVDSWLIRWGT-FCPVCRHEI 198 (214)
Q Consensus 165 ~~~~l~C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i 198 (214)
..+...|||.|-.+ .... .||.|.++-
T Consensus 73 ~~~C~~CG~~~e~~-------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN-------ALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC-------CSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC-------CCCCCcCccccCCC
Confidence 33445588887752 2233 599998763
No 205
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=33.48 E-value=50 Score=16.67 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028085 86 IVWGMLLLFVISIPLLFW 103 (214)
Q Consensus 86 ~~~~~l~~~i~~~~~~~~ 103 (214)
+.++++++++.+++...+
T Consensus 17 Ly~GLLlifvlavlFssy 34 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 344555544444444433
No 206
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=33.12 E-value=8.2 Score=21.03 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=18.9
Q ss_pred EecCCCccChhhHHHHHHhCCCCcccccccccccc
Q 028085 168 VLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRRST 202 (214)
Q Consensus 168 ~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~~~ 202 (214)
.+.||+.|-.+=+... ....||.|--.+..+.
T Consensus 6 C~rCg~~fs~~el~~l---P~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL---PGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCCTTTTCCCCCSCCC---SSSCCTTTCCSCEECC
T ss_pred eeccCCCccHHHHhhC---CCcccCccCcEEEEEe
Confidence 4567777765543221 2236999987776554
No 207
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.68 E-value=4.6 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=11.5
Q ss_pred HHHHhCCCCccccccccccc
Q 028085 182 SWLIRWGTFCPVCRHEIRRS 201 (214)
Q Consensus 182 ~Wl~~~~~~CP~Cr~~i~~~ 201 (214)
+||..-- .||.|+.++.-.
T Consensus 5 ~~LLeiL-~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLLEVL-ACPKDKGPLRYL 23 (67)
T ss_dssp GGGTCCC-BCTTTCCBCEEE
T ss_pred HHHHHHh-CCCCCCCcCeEe
Confidence 4444333 388888877544
No 208
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.11 E-value=18 Score=20.43 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=9.7
Q ss_pred CcccccccccccC
Q 028085 150 ETLCSICLEDYRE 162 (214)
Q Consensus 150 ~~~C~ICl~~~~~ 162 (214)
-..|+.|...++-
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 3579999988653
No 209
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.01 E-value=17 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=24.6
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+-|-..+.+. .+ ..-+..||.+|+ .|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~-~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YL--SAMDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSS-CE--EETTEEECTTTC---------BCSSSCCBSCS
T ss_pred CccccCCCeecce-eE--EECCCeEecCcC---------ChhhCCCCCCC
Confidence 4688888877742 22 334677887774 27777777654
No 210
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.00 E-value=16 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.589 Sum_probs=25.7
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
..|+-|-..+.+ + .+..-+..||.+|+ .|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~--~-~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD--R-ILRAMGKAYHPGCF---------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS--C-CEEETTEEECTTTC---------BCSSSCCBCT
T ss_pred CccccCCCeecc--e-eEEECCccccHHhc---------CcccCCCccC
Confidence 468888888773 2 23345778888884 3888888775
No 211
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.82 E-value=14 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=13.2
Q ss_pred EEecCCCccChhhHHHHHHhCCCCccccccc
Q 028085 167 RVLPCRHEFHSSCVDSWLIRWGTFCPVCRHE 197 (214)
Q Consensus 167 ~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~ 197 (214)
+...|||++-. .... .||+|..+
T Consensus 140 ~C~~CG~i~~~-------~~p~-~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPE-YCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES-------CCCS-BCTTTCCB
T ss_pred EeCCCCCeeCC-------CCCC-CCCCCCCC
Confidence 33448887641 1112 59999754
No 212
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.45 E-value=3.3 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=21.7
Q ss_pred EEec-CCCccChhhHHHHHHhCCC-Ccccccccc
Q 028085 167 RVLP-CRHEFHSSCVDSWLIRWGT-FCPVCRHEI 198 (214)
Q Consensus 167 ~~l~-C~H~FH~~Ci~~Wl~~~~~-~CP~Cr~~i 198 (214)
+.-| |+|.||..|-.+|=+.+.. +|..=+.-.
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~ 77 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWK 77 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHHHHHH
Confidence 4556 9999999999998333322 577655543
No 213
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.21 E-value=11 Score=22.74 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=28.0
Q ss_pred cccccccccccCCCceEEe-cCCCccChhhHHHHHHh----CCCCcccccccc
Q 028085 151 TLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR----WGTFCPVCRHEI 198 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~----~~~~CP~Cr~~i 198 (214)
..| ||-..+..+.....- .|.-=||..|+.---.. ....||.|+..-
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 345 787766533333333 37877999999532211 223699997653
No 214
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.31 E-value=21 Score=21.08 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=28.4
Q ss_pred cccccccccccC---CCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYRE---GENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~---~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|+-|-..+.. .++ .+..=+..||.+|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC---------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC---------EehhcCCCCCC
Confidence 479999998885 222 33345788999884 38889888753
No 215
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=30.17 E-value=30 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHHcCCcEEEEE
Q 028085 12 IQNAQAAGYDAAIVY 26 (214)
Q Consensus 12 ~~~a~~~ga~aviv~ 26 (214)
...|++.||.|||=-
T Consensus 68 ~e~A~~lGANAVIgv 82 (111)
T 3qkb_A 68 KKKADLLEGDGIIGL 82 (111)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEEE
Confidence 456899999999944
No 216
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.41 E-value=13 Score=24.04 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.1
Q ss_pred Ccccccccccc
Q 028085 190 FCPVCRHEIRR 200 (214)
Q Consensus 190 ~CP~Cr~~i~~ 200 (214)
.||+|.+++..
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 49999887753
No 217
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.76 E-value=35 Score=22.04 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=17.6
Q ss_pred cccccccccccC-CCceEEecCCCccChhhHHHHH
Q 028085 151 TLCSICLEDYRE-GENLRVLPCRHEFHSSCVDSWL 184 (214)
Q Consensus 151 ~~C~ICl~~~~~-~~~~~~l~C~H~FH~~Ci~~Wl 184 (214)
..|..|-..+.+ +.. ....=+..||..|..+-+
T Consensus 31 F~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLG 64 (114)
T ss_dssp CCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHH
T ss_pred CcccccCCchhcCCCe-eEEECCeeechHHHHHHh
Confidence 466677666653 211 122235667777766544
No 218
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.56 E-value=22 Score=20.22 Aligned_cols=38 Identities=21% Similarity=0.563 Sum_probs=26.6
Q ss_pred ccccccccccCCCceEEecCCCccC--hhhHHHHHHhCCCCccccccccc
Q 028085 152 LCSICLEDYREGENLRVLPCRHEFH--SSCVDSWLIRWGTFCPVCRHEIR 199 (214)
Q Consensus 152 ~C~ICl~~~~~~~~~~~l~C~H~FH--~~Ci~~Wl~~~~~~CP~Cr~~i~ 199 (214)
.|+-|-..+..+++ .+..-+..|| .+|+ .|-.|+.+|.
T Consensus 4 ~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF---------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQ-RVTYNNFSWHASTECF---------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSC-EEEETTEEEETTTTTS---------BCTTTCCBCT
T ss_pred CCcCCCCeeccCce-EEEECCCccCCCCCCE---------ECCCCCCcCC
Confidence 68888888886433 2333578899 8884 3888887774
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.72 E-value=46 Score=21.73 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=28.3
Q ss_pred cccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 151 TLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 151 ~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
..|..|-..+... -....=|..||..|..+- ....|+.|..+|..
T Consensus 31 F~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC--EEEeECCEEechHHhCcC---cCccCcccCCcCCc
Confidence 4677777776532 233445677777777552 33458888887763
No 220
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.40 E-value=67 Score=20.93 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=25.4
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHh
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIR 186 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~ 186 (214)
-..|..|-..+..++.. ...=+..||..|....+..
T Consensus 36 CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhcc
Confidence 35788888888656443 3445788999998887644
No 221
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.81 E-value=1e+02 Score=18.22 Aligned_cols=8 Identities=25% Similarity=0.978 Sum_probs=3.9
Q ss_pred ccccccch
Q 028085 73 PLSYAWNK 80 (214)
Q Consensus 73 p~~~~~~~ 80 (214)
|.++.|..
T Consensus 8 PF~YDY~t 15 (72)
T 2jo1_A 8 PFTYDYQS 15 (72)
T ss_dssp GGGCSTHH
T ss_pred CcccchHH
Confidence 44455544
No 222
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.89 E-value=36 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=30.3
Q ss_pred CcccccccccccCCCceEEecCCCccChhhHHHHHHhCCCCcccccccccc
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFHSSCVDSWLIRWGTFCPVCRHEIRR 200 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH~~Ci~~Wl~~~~~~CP~Cr~~i~~ 200 (214)
-..|..|-..+... . ....=+..||..|..+ .....|..|..+|..
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-T-FVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-C-CEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-e-eECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 35788888887533 2 2334577888888743 334469999998863
No 223
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=25.47 E-value=61 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCcEEEEEe
Q 028085 8 FSYKIQNAQAAGYDAAIVYA 27 (214)
Q Consensus 8 f~~K~~~a~~~ga~aviv~~ 27 (214)
+..=..+|++.||.|+|=.+
T Consensus 37 ~~rm~e~A~~lGAnAVVgvr 56 (81)
T 2jz7_A 37 VENLRKQVKAKGGMGLIAFR 56 (81)
T ss_dssp HHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEEE
Confidence 34456789999999999543
No 224
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.47 E-value=20 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.807 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q 028085 190 FCPVCRHEIRRST 202 (214)
Q Consensus 190 ~CP~Cr~~i~~~~ 202 (214)
.||.|+.++.-..
T Consensus 10 ~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 10 VCPLCKGPLVFDK 22 (68)
T ss_dssp BCTTTCCBCEEET
T ss_pred ECCCCCCcCeEeC
Confidence 4999999886543
No 225
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.37 E-value=10 Score=23.85 Aligned_cols=43 Identities=26% Similarity=0.530 Sum_probs=24.9
Q ss_pred CCcccccccccccCCCceEEe-cCC---CccChhhHHHHHHhC---CCCccc-ccc
Q 028085 149 RETLCSICLEDYREGENLRVL-PCR---HEFHSSCVDSWLIRW---GTFCPV-CRH 196 (214)
Q Consensus 149 ~~~~C~ICl~~~~~~~~~~~l-~C~---H~FH~~Ci~~Wl~~~---~~~CP~-Cr~ 196 (214)
...-| ||-.... + .+..- .|. .-||..|+. |... ...||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 44567 8986532 3 32222 233 579999996 2221 237999 975
No 226
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.23 E-value=21 Score=21.13 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q 028085 190 FCPVCRHEIRRST 202 (214)
Q Consensus 190 ~CP~Cr~~i~~~~ 202 (214)
.||.|+.++.-..
T Consensus 10 ~CP~ck~~L~~~~ 22 (68)
T 2jr6_A 10 VCPVTKGRLEYHQ 22 (68)
T ss_dssp BCSSSCCBCEEET
T ss_pred ECCCCCCcCeEeC
Confidence 4999999886543
No 227
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=24.05 E-value=37 Score=21.12 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=28.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEeCCCCCCeee-ee--CCCCCeeeEEEEc
Q 028085 4 GQCNFSYKIQNAQAAGYDAAIVYALRKKSPLIY-MT--YPEGANVPAFYVT 51 (214)
Q Consensus 4 g~C~f~~K~~~a~~~ga~aviv~~~~~~~~~~~-m~--~~~~~~Ip~v~v~ 51 (214)
..|+|=.|++...+.-....-.+|...++.... |. +...-++|+++|.
T Consensus 12 ~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~ 62 (92)
T 2lqo_A 12 SWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFA 62 (92)
T ss_dssp TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEET
T ss_pred CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEe
Confidence 469999999998864333334455443322211 11 2234589999884
No 228
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.92 E-value=23 Score=23.90 Aligned_cols=25 Identities=36% Similarity=0.814 Sum_probs=16.3
Q ss_pred cccccccccccCCC-ceEEec-CCCcc
Q 028085 151 TLCSICLEDYREGE-NLRVLP-CRHEF 175 (214)
Q Consensus 151 ~~C~ICl~~~~~~~-~~~~l~-C~H~F 175 (214)
..||-|-++|.=.| .....| |+|-+
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 56999999865322 345555 88854
No 229
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=23.63 E-value=20 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=21.7
Q ss_pred EecCCCccChhhHHHHHHhC----CCCccccccc
Q 028085 168 VLPCRHEFHSSCVDSWLIRW----GTFCPVCRHE 197 (214)
Q Consensus 168 ~l~C~H~FH~~Ci~~Wl~~~----~~~CP~Cr~~ 197 (214)
..+|.|+++..++..|-..- ...|+.|+..
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCCcChhhccccccccccccCCCCCcCcccccc
Confidence 45799999999998886431 1259999864
No 230
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.18 E-value=22 Score=21.19 Aligned_cols=13 Identities=31% Similarity=0.917 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q 028085 190 FCPVCRHEIRRST 202 (214)
Q Consensus 190 ~CP~Cr~~i~~~~ 202 (214)
.||.|+.++.-..
T Consensus 10 ~CP~ck~~L~~~~ 22 (70)
T 2js4_A 10 VCPVCKGRLEFQR 22 (70)
T ss_dssp BCTTTCCBEEEET
T ss_pred ECCCCCCcCEEeC
Confidence 4999999886543
No 231
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.95 E-value=21 Score=29.96 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceEEe-cCCCccChhhHHHHHHh----CCCCccccccc
Q 028085 150 ETLCSICLEDYREGENLRVL-PCRHEFHSSCVDSWLIR----WGTFCPVCRHE 197 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l-~C~H~FH~~Ci~~Wl~~----~~~~CP~Cr~~ 197 (214)
...| +|-..+..+.....- .|.-=||..|+.---.. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3456 888776534344343 38877999999532211 12379999754
No 232
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=22.13 E-value=20 Score=22.33 Aligned_cols=13 Identities=15% Similarity=0.761 Sum_probs=8.6
Q ss_pred CCccccccccccc
Q 028085 149 RETLCSICLEDYR 161 (214)
Q Consensus 149 ~~~~C~ICl~~~~ 161 (214)
....|.||+..|-
T Consensus 44 ~~i~C~VCr~tFm 56 (86)
T 1wvk_A 44 MSIQCKVCMQTFI 56 (86)
T ss_dssp CCEEETTTTEEEC
T ss_pred hCCCChHhHhhHH
Confidence 3457888877664
No 233
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.10 E-value=44 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.3
Q ss_pred CcccccccccccCCCceEEecCCCccC
Q 028085 150 ETLCSICLEDYREGENLRVLPCRHEFH 176 (214)
Q Consensus 150 ~~~C~ICl~~~~~~~~~~~l~C~H~FH 176 (214)
...|..|... ++...-|.|||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 3569999876 23667888999987
No 234
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.87 E-value=20 Score=25.93 Aligned_cols=8 Identities=50% Similarity=1.564 Sum_probs=6.4
Q ss_pred Cccccccc
Q 028085 190 FCPVCRHE 197 (214)
Q Consensus 190 ~CP~Cr~~ 197 (214)
.||.|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 59999775
No 235
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=20.98 E-value=70 Score=21.49 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.9
Q ss_pred HHHHHcCCcEEEEEe
Q 028085 13 QNAQAAGYDAAIVYA 27 (214)
Q Consensus 13 ~~a~~~ga~aviv~~ 27 (214)
+.|++.||-|||+..
T Consensus 80 ~kAa~~gANaVll~q 94 (128)
T 2y1b_A 80 INASKMKANAVLLHS 94 (128)
T ss_dssp HHHHHTTCSEEEEEE
T ss_pred HHHHHcCCCEEEEEe
Confidence 467889999999986
Done!