BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028086
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 123/161 (76%), Positives = 143/161 (88%), Gaps = 5/161 (3%)
Query: 58 SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEE 112
SMD+PPEGYRRNVGICL+N+ KKIFAASRLDIPD+WQMPQ EDP+ AA+REL+EE
Sbjct: 5 SMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREE 64
Query: 113 TGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
TGV+SAEV+AEVPYWLTYDFPP+VREKL QWG DWKGQAQKWFL KFTG+++EINLLGD
Sbjct: 65 TGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGD 124
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
SEKPEFGEW W++PEQ+++ V+FKKPVYKEV +VF PHL
Sbjct: 125 GSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
+GYR NVGI + N ++ A R SWQ PQ E + A REL EE G+S
Sbjct: 5 DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRK 63
Query: 119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGDWK----GQAQKWFLLKFTGKEEEINLLGD 172
+V LA WL Y P + +W D K GQ QKWFLL+ + EIN+
Sbjct: 64 DVRILASTRNWLRYKLPKRL-----VRW--DTKPVCIGQKQKWFLLQLVSGDAEINM--Q 114
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 210
S PEF W+W+S + + V FK+ VY+ V F
Sbjct: 115 TSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA 152
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
+GYR NVGI + N ++ A R SWQ PQ E + A R L EE G+S
Sbjct: 5 DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRK 63
Query: 119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGDWK----GQAQKWFLLKFTGKEEEINLLGD 172
+V LA WL Y P + +W D K GQ QKWFLL+ + EIN+
Sbjct: 64 DVRILASTRNWLRYKLPKRL-----VRW--DTKPVCIGQKQKWFLLQLVSGDAEINM--Q 114
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 210
S PEF W+W+S + + V FK+ VY+ V F
Sbjct: 115 TSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA 152
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 66 YRRNVGICLI---NSSKKIFAASRLDIPDSWQ-----MPQNEDPKVAALRELKEETGVS- 116
Y+R V I ++ +K++ R D PD WQ + + E AA+RE+KEE +
Sbjct: 6 YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65
Query: 117 SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF 160
AE L + T +F E+ L+H++ + WF L
Sbjct: 66 VAEQLTLIDCQRTVEF--EIFSHLRHRYAPGVTRNTESWFCLAL 107
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 87 LDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGG 146
L+IP P EDP AA REL EETG+S ++ Y +Y P ++ H +
Sbjct: 62 LEIPAGLIEP-GEDPLEAARRELAEETGLSG-----DLTYLFSYFVSPGFTDEKTHVF-- 113
Query: 147 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
L KE E + ++ E E WM PE+ LER
Sbjct: 114 -----------LAENLKEVEAH-----PDEDEAIEVVWMRPEEALER 144
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 64 EGYRRNVGICLI---NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV 115
+GY++ CL S +++ S PD W +P E+P VAA+RE+ EE GV
Sbjct: 37 DGYKKRAA-CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 87 LDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGG 146
L+IP P EDP AA REL E+TG+S ++ Y +Y P ++ H +
Sbjct: 62 LEIPAGLIEP-GEDPLEAARRELAEQTGLSG-----DLTYLFSYFVSPGFTDEKTHVF-- 113
Query: 147 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
L KE E + ++ E E WM PE+ LER
Sbjct: 114 -----------LAENLKEVEAH-----PDEDEAIEVVWMRPEEALER 144
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 87 LDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGG 146
L+IP P EDP AA R+L EETG+S ++ Y +Y P ++ H +
Sbjct: 62 LEIPAGLIEP-GEDPLEAARRQLAEETGLSG-----DLTYLFSYFVSPGFTDEKTHVF-- 113
Query: 147 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
L KE E + ++ E E WM PE+ LER
Sbjct: 114 -----------LAENLKEVEAH-----PDEDEAIEVVWMRPEEALER 144
>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus.
pdb|3TH6|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus
Length = 249
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 119 EVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEIN--LLGDKSEK 176
EV ++V WL+ + +V K++ Q+GG K G++ +I+ L+G S K
Sbjct: 183 EVHSKVRNWLSTNVSADVASKVRIQYGGSVNAGNCKEL-----GRKPDIDGFLVGGASLK 237
Query: 177 PEF 179
PEF
Sbjct: 238 PEF 240
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 68 RNVGICLINSSKKIFAASRLDIPDS------WQMPQN-----EDPKVAALRELKEETGV 115
R G+ L+N I IP W +P E+P+ AA+RE EETG+
Sbjct: 14 RAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72
>pdb|1BCC|D Chain D, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|D Chain D, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|D Chain D, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 241
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 51 QICSSSYSMDAPPEGYRRNVGICLINSSKKIFA 83
Q+CSS +SMD YR VG+C K A
Sbjct: 35 QVCSSCHSMDY--VAYRHLVGVCYTEDEAKALA 65
>pdb|2D36|A Chain A, The Crystal Structure Of Flavin Reductase Hpac
pdb|2D37|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nad+
pdb|2D38|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nadp+
Length = 176
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
PP V G D + K+F++ FT EE N+ K K F E K+
Sbjct: 62 PPLVSFFADRMKGNDIPYKESKYFVVNFTDNEELFNIFALKPVKERFREIKY 113
>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|P Chain P, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|D Chain D, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|D Chain D, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex At 2.4 Angstrom
pdb|1NTZ|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex Bound With Ubiquinone
pdb|1NU1|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With
Azoxystrobin
pdb|2A06|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With
Stigmatellin A
pdb|1SQP|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With
Myxothiazol
pdb|1SQQ|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|D Chain D, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|D Chain D, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|DD Chain d, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 241
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 51 QICSSSYSMDAPPEGYRRNVGICLINSSKKIFA 83
Q+CSS +SMD YR VG+C K A
Sbjct: 35 QVCSSCHSMDY--VAYRHLVGVCYTEDEAKALA 65
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 64 EGYRRNVGICLINSSKK--IFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS 116
EG+++ S ++ + S PD W +P E+P AA+RE+ EE GV
Sbjct: 7 EGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVK 66
Query: 117 S 117
Sbjct: 67 G 67
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 91 DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLT 129
+ W P+ E P+ A+RE+ EETGV + + E+ YW T
Sbjct: 25 NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYT 70
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 87 LDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYW 127
L++P + ++ + E P+ AA REL+EE G + AE L +P +
Sbjct: 70 LEVP-AGKVDEGETPEAAARRELREEVG-AEAETLIPLPSF 108
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 73 CLINSSKK---IFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS 117
CL S++ + S PD W +P E+P AA+RE+ EE GV
Sbjct: 7 CLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKG 59
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 69 NVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVS 116
N I + + A++L+ P ++ E P+ A +REL+EE G++
Sbjct: 15 NNEIFITRRAADAHMANKLEFPGG-KIEMGETPEQAVVRELQEEVGIT 61
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 91 DSWQMP-----QNEDPKVAALRELKEETG--VSSAEVLAEVPYWLT 129
D W P QNE + AA+RE+ EETG V L EV Y L+
Sbjct: 49 DDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLS 94
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 91 DSWQMP-----QNEDPKVAALRELKEETGV 115
+SW +P +NE + + LRE KEETGV
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
An Hexagonal Crystal Form
pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
Complex With S-Adenosylmethionine
Length = 310
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 56 SYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELK-EETG 114
+Y +A +G R+ V + S+ A RLD P + + + PKV A + E G
Sbjct: 93 TYFNNAVIDGIRQFVILASGLDSR----AYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHG 148
Query: 115 VSSAEVLAEVPYWLTYDFPPEVR 137
V+ EVP L D+PP +R
Sbjct: 149 VTPTADRREVPIDLRQDWPPALR 171
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 95 MPQNEDPKVAALRELKEETG 114
+ E P+ AALREL+EETG
Sbjct: 101 IDDGETPEAAALRELEEETG 120
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 95 MPQNEDPKVAALRELKEETG 114
+ E P+ AALREL+EETG
Sbjct: 87 IDDGETPEAAALRELEEETG 106
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 95 MPQNEDPKVAALRELKEETG 114
+ E P+ AALREL+EETG
Sbjct: 86 IDDGETPEAAALRELEEETG 105
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 95 MPQNEDPKVAALRELKEETG 114
+ E P+ AALREL+EETG
Sbjct: 99 IDDGETPEAAALRELEEETG 118
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 95 MPQNEDPKVAALRELKEETG 114
+ E P+ AALREL+EETG
Sbjct: 99 IDDGETPEAAALRELEEETG 118
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 24/98 (24%)
Query: 105 ALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQA--QKWFLLKFTG 162
A+ + E+TG + ++V+AE+ ++ W GQA K +LK
Sbjct: 524 AISYMSEQTGTAESDVVAEIERYMA------------------WPGQALGYKLGMLKILS 565
Query: 163 -KEEEINLLGDKSEKPEFGEWKWMS---PEQILERAVD 196
+E+ LGDK + EF + ++ P +L R V+
Sbjct: 566 LREQAKARLGDKFDLAEFHDVVLLNGAVPMAVLSRNVN 603
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 70 VGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETGV 115
V L++ ++ R + + W+ P Q E P+ + +REL+EE GV
Sbjct: 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,778,866
Number of Sequences: 62578
Number of extensions: 280945
Number of successful extensions: 1038
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 31
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)