Query 028086
Match_columns 214
No_of_seqs 256 out of 1477
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00714 RNA pyrophosphohydrol 99.9 1.4E-23 3.1E-28 167.3 16.6 144 64-213 5-155 (156)
2 cd03671 Ap4A_hydrolase_plant_l 99.9 1.5E-23 3.2E-28 165.1 16.3 139 66-209 2-147 (147)
3 PRK09438 nudB dihydroneopterin 99.8 3.4E-20 7.3E-25 145.8 12.7 133 66-210 6-147 (148)
4 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.5E-18 3.3E-23 132.3 10.3 113 67-201 2-123 (125)
5 cd03430 GDPMH GDP-mannose glyc 99.8 5.9E-18 1.3E-22 133.1 12.3 111 66-193 11-132 (144)
6 cd03673 Ap6A_hydrolase Diadeno 99.8 7.8E-18 1.7E-22 128.4 12.0 119 67-206 1-130 (131)
7 PLN02325 nudix hydrolase 99.8 6.2E-18 1.3E-22 133.1 11.3 124 60-202 2-134 (144)
8 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.1E-17 2.5E-22 127.6 11.1 113 68-201 3-123 (125)
9 cd04681 Nudix_Hydrolase_22 Mem 99.7 9E-18 2E-22 128.6 10.5 102 69-191 3-113 (130)
10 PRK15434 GDP-mannose mannosyl 99.7 1.5E-17 3.2E-22 133.2 11.8 118 67-202 17-148 (159)
11 PF00293 NUDIX: NUDIX domain; 99.7 1.3E-17 2.8E-22 127.0 10.2 122 66-205 1-132 (134)
12 cd04677 Nudix_Hydrolase_18 Mem 99.7 1.7E-17 3.8E-22 127.1 10.7 117 66-201 6-130 (132)
13 cd04700 DR1025_like DR1025 fro 99.7 3.7E-17 7.9E-22 128.1 12.7 109 65-196 11-128 (142)
14 cd04680 Nudix_Hydrolase_21 Mem 99.7 2.5E-17 5.5E-22 124.0 10.9 111 69-202 2-117 (120)
15 cd04670 Nudix_Hydrolase_12 Mem 99.7 7.7E-17 1.7E-21 123.2 13.2 118 67-207 2-125 (127)
16 cd04664 Nudix_Hydrolase_7 Memb 99.7 3.9E-17 8.5E-22 125.1 11.1 115 68-201 2-127 (129)
17 cd03428 Ap4A_hydrolase_human_l 99.7 7E-17 1.5E-21 123.5 12.4 117 67-206 2-129 (130)
18 cd03672 Dcp2p mRNA decapping e 99.7 1.2E-17 2.6E-22 131.7 8.2 108 68-197 2-115 (145)
19 cd03674 Nudix_Hydrolase_1 Memb 99.7 7.2E-17 1.6E-21 125.7 12.1 123 67-206 2-137 (138)
20 PRK15472 nucleoside triphospha 99.7 7E-17 1.5E-21 125.9 11.7 117 68-203 4-136 (141)
21 cd04676 Nudix_Hydrolase_17 Mem 99.7 1E-16 2.2E-21 121.4 11.6 117 67-202 2-127 (129)
22 cd04678 Nudix_Hydrolase_19 Mem 99.7 1.3E-16 2.7E-21 122.2 12.1 107 67-193 2-117 (129)
23 cd04683 Nudix_Hydrolase_24 Mem 99.7 1.4E-16 3.1E-21 120.3 11.2 108 69-198 2-119 (120)
24 cd04684 Nudix_Hydrolase_25 Con 99.7 2.4E-16 5.2E-21 119.7 12.1 109 69-195 2-119 (128)
25 cd03429 NADH_pyrophosphatase N 99.7 2.2E-16 4.7E-21 122.1 11.5 116 69-209 2-128 (131)
26 cd04695 Nudix_Hydrolase_36 Mem 99.7 3.6E-16 7.9E-21 120.5 12.6 114 76-209 11-131 (131)
27 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 2.6E-16 5.6E-21 121.6 11.6 109 67-196 2-118 (137)
28 cd04669 Nudix_Hydrolase_11 Mem 99.7 6.2E-16 1.3E-20 117.8 11.7 104 70-195 3-116 (121)
29 cd04682 Nudix_Hydrolase_23 Mem 99.7 5.5E-16 1.2E-20 117.8 11.2 101 69-194 3-115 (122)
30 cd04692 Nudix_Hydrolase_33 Mem 99.7 3.7E-16 8.1E-21 122.4 10.5 111 66-195 1-129 (144)
31 cd04671 Nudix_Hydrolase_13 Mem 99.7 8.4E-16 1.8E-20 117.7 11.8 98 69-191 2-108 (123)
32 cd02885 IPP_Isomerase Isopente 99.7 6.4E-16 1.4E-20 124.0 11.5 108 66-195 29-150 (165)
33 cd03675 Nudix_Hydrolase_2 Cont 99.7 1.4E-15 3E-20 117.2 12.7 103 70-195 3-113 (134)
34 cd04687 Nudix_Hydrolase_28 Mem 99.7 1.3E-15 2.9E-20 116.6 12.3 115 67-195 1-123 (128)
35 cd04697 Nudix_Hydrolase_38 Mem 99.7 6.3E-16 1.4E-20 118.5 10.4 104 68-195 1-114 (126)
36 cd04673 Nudix_Hydrolase_15 Mem 99.7 1.5E-15 3.2E-20 114.6 11.6 106 69-195 2-116 (122)
37 cd04672 Nudix_Hydrolase_14 Mem 99.7 1.5E-15 3.3E-20 115.6 11.5 107 67-196 2-115 (123)
38 cd03427 MTH1 MutT homolog-1 (M 99.7 1.3E-15 2.7E-20 117.7 11.0 114 69-207 3-126 (137)
39 cd04688 Nudix_Hydrolase_29 Mem 99.6 2.4E-15 5.1E-20 114.8 12.2 111 69-195 3-120 (126)
40 cd04689 Nudix_Hydrolase_30 Mem 99.6 2.5E-15 5.4E-20 114.5 11.8 104 68-191 2-112 (125)
41 PRK03759 isopentenyl-diphospha 99.6 1.8E-15 3.9E-20 123.6 11.5 113 63-195 30-154 (184)
42 cd04691 Nudix_Hydrolase_32 Mem 99.6 1.3E-15 2.8E-20 115.3 9.9 99 70-195 3-110 (117)
43 PRK10546 pyrimidine (deoxy)nuc 99.6 5.2E-15 1.1E-19 113.9 13.3 112 70-208 6-128 (135)
44 cd04686 Nudix_Hydrolase_27 Mem 99.6 2.1E-15 4.6E-20 116.5 11.1 110 69-193 2-119 (131)
45 cd04693 Nudix_Hydrolase_34 Mem 99.6 1.5E-15 3.3E-20 116.1 10.0 103 69-196 2-116 (127)
46 TIGR02150 IPP_isom_1 isopenten 99.6 2.5E-15 5.5E-20 119.9 11.3 109 63-195 23-144 (158)
47 cd04661 MRP_L46 Mitochondrial 99.6 3.2E-15 6.9E-20 115.7 11.1 104 77-195 11-122 (132)
48 cd04690 Nudix_Hydrolase_31 Mem 99.6 2.6E-15 5.6E-20 112.9 10.2 105 69-195 2-112 (118)
49 cd04666 Nudix_Hydrolase_9 Memb 99.6 6.3E-15 1.4E-19 112.8 12.0 105 69-195 2-117 (122)
50 cd04685 Nudix_Hydrolase_26 Mem 99.6 4.8E-15 1.1E-19 115.2 11.2 111 68-193 1-123 (133)
51 cd04694 Nudix_Hydrolase_35 Mem 99.6 6.5E-15 1.4E-19 115.9 11.8 114 69-195 3-133 (143)
52 cd04667 Nudix_Hydrolase_10 Mem 99.6 6.8E-15 1.5E-19 110.2 11.3 96 73-197 5-105 (112)
53 PRK15393 NUDIX hydrolase YfcD; 99.6 9.6E-15 2.1E-19 119.1 12.8 111 64-198 34-154 (180)
54 PRK00241 nudC NADH pyrophospha 99.6 1.3E-14 2.9E-19 124.4 14.0 147 29-209 98-252 (256)
55 COG1051 ADP-ribose pyrophospha 99.6 1.1E-14 2.4E-19 114.9 12.5 116 64-202 7-133 (145)
56 cd03426 CoAse Coenzyme A pyrop 99.6 6.8E-15 1.5E-19 117.2 11.2 102 69-194 4-119 (157)
57 cd04699 Nudix_Hydrolase_39 Mem 99.6 9.1E-15 2E-19 111.1 11.3 50 68-117 2-60 (129)
58 PRK10776 nucleoside triphospha 99.6 1.6E-14 3.5E-19 109.6 12.5 112 68-206 5-127 (129)
59 cd04511 Nudix_Hydrolase_4 Memb 99.6 1.4E-14 3E-19 111.5 12.1 100 65-191 11-117 (130)
60 PRK05379 bifunctional nicotina 99.6 2.2E-14 4.8E-19 127.7 13.9 123 68-206 204-338 (340)
61 cd03425 MutT_pyrophosphohydrol 99.6 6.7E-14 1.5E-18 104.9 11.7 109 70-203 4-121 (124)
62 TIGR00586 mutt mutator mutT pr 99.5 1.4E-13 3.1E-18 104.6 13.0 110 67-203 4-124 (128)
63 cd03676 Nudix_hydrolase_3 Memb 99.5 1.4E-13 3E-18 111.8 11.7 117 62-195 27-160 (180)
64 PLN02552 isopentenyl-diphospha 99.5 2.1E-13 4.5E-18 116.2 13.0 136 62-208 51-226 (247)
65 cd02883 Nudix_Hydrolase Nudix 99.5 3.7E-13 7.9E-18 99.9 11.6 105 69-195 2-114 (123)
66 PRK11762 nudE adenosine nucleo 99.5 6.1E-13 1.3E-17 108.7 11.5 103 69-195 49-161 (185)
67 PRK10707 putative NUDIX hydrol 99.4 1.1E-12 2.5E-17 107.8 11.8 105 66-194 29-147 (190)
68 TIGR00052 nudix-type nucleosid 99.4 7E-13 1.5E-17 108.6 9.8 110 68-196 45-168 (185)
69 cd04662 Nudix_Hydrolase_5 Memb 99.4 1E-12 2.2E-17 101.2 9.1 49 69-117 2-64 (126)
70 PRK10729 nudF ADP-ribose pyrop 99.4 4.8E-12 1E-16 105.1 11.6 110 68-195 50-173 (202)
71 PRK08999 hypothetical protein; 99.4 5.8E-12 1.2E-16 110.4 12.5 112 67-205 5-127 (312)
72 PRK15009 GDP-mannose pyrophosp 99.4 6.7E-12 1.5E-16 103.4 12.1 109 68-195 46-168 (191)
73 KOG2839 Diadenosine and diphos 99.3 7.8E-12 1.7E-16 97.2 8.2 127 62-208 4-141 (145)
74 PLN02709 nudix hydrolase 99.3 3.7E-11 7.9E-16 100.8 11.4 91 80-193 52-155 (222)
75 PLN02791 Nudix hydrolase homol 99.3 3.2E-11 6.9E-16 116.5 12.4 116 64-194 29-159 (770)
76 cd04665 Nudix_Hydrolase_8 Memb 99.3 3.6E-11 7.8E-16 91.7 10.0 93 70-190 3-102 (118)
77 cd04663 Nudix_Hydrolase_6 Memb 99.3 8.6E-11 1.9E-15 90.6 11.9 46 70-117 3-55 (126)
78 cd04674 Nudix_Hydrolase_16 Mem 99.3 1E-10 2.3E-15 89.2 11.4 49 68-117 5-60 (118)
79 TIGR02705 nudix_YtkD nucleosid 99.2 4.3E-10 9.3E-15 89.8 11.1 110 69-209 26-150 (156)
80 COG0494 MutT NTP pyrophosphohy 99.1 8.7E-10 1.9E-14 83.3 11.6 50 69-118 13-69 (161)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 8.4E-10 1.8E-14 90.5 11.0 36 80-116 50-90 (186)
82 PLN03143 nudix hydrolase; Prov 99.1 1.5E-09 3.2E-14 94.6 13.2 117 69-198 130-270 (291)
83 COG2816 NPY1 NTP pyrophosphohy 99.1 1.7E-10 3.8E-15 99.1 6.1 102 67-196 144-253 (279)
84 KOG3084 NADH pyrophosphatase I 99.0 2.6E-10 5.5E-15 98.8 4.8 53 66-118 186-245 (345)
85 KOG0648 Predicted NUDIX hydrol 99.0 6.4E-10 1.4E-14 96.1 4.7 121 55-196 103-234 (295)
86 COG1443 Idi Isopentenyldiphosp 98.9 3E-09 6.5E-14 85.2 7.6 110 66-195 32-155 (185)
87 KOG3041 Nucleoside diphosphate 98.9 2.7E-08 5.9E-13 81.2 11.7 111 68-195 74-196 (225)
88 cd03431 DNA_Glycosylase_C DNA 98.8 4.5E-08 9.8E-13 72.8 9.9 45 71-115 6-58 (118)
89 COG4119 Predicted NTP pyrophos 98.8 2E-08 4.4E-13 76.6 7.7 127 67-209 3-151 (161)
90 KOG3069 Peroxisomal NUDIX hydr 98.7 1.5E-07 3.2E-12 78.9 9.4 106 68-194 44-164 (246)
91 KOG0142 Isopentenyl pyrophosph 98.2 4E-06 8.7E-11 68.7 6.2 113 66-195 51-185 (225)
92 PLN02839 nudix hydrolase 98.1 3.5E-05 7.5E-10 69.0 10.5 99 79-195 218-329 (372)
93 PF14815 NUDIX_4: NUDIX domain 97.9 1.8E-05 4E-10 59.2 4.2 94 72-196 2-106 (114)
94 KOG2937 Decapping enzyme compl 97.1 8.6E-05 1.9E-09 65.2 -0.4 75 42-117 57-137 (348)
95 PRK10880 adenine DNA glycosyla 96.1 0.12 2.5E-06 46.6 12.3 45 70-116 233-280 (350)
96 COG4112 Predicted phosphoester 96.0 0.051 1.1E-06 43.6 8.3 98 71-192 65-186 (203)
97 KOG4195 Transient receptor pot 95.3 0.042 9.1E-07 46.1 5.5 34 80-114 140-178 (275)
98 PF13869 NUDIX_2: Nucleotide h 94.8 0.12 2.6E-06 42.4 7.0 50 65-116 41-98 (188)
99 KOG4548 Mitochondrial ribosoma 93.7 0.44 9.5E-06 40.8 8.3 102 81-198 141-252 (263)
100 PRK13910 DNA glycosylase MutY; 91.5 1.9 4E-05 37.9 9.6 27 72-99 191-219 (289)
101 KOG4313 Thiamine pyrophosphoki 90.8 0.88 1.9E-05 39.0 6.5 98 80-194 149-259 (306)
102 TIGR01084 mutY A/G-specific ad 88.5 1.4 3E-05 38.4 6.2 40 71-112 231-273 (275)
103 KOG4432 Uncharacterized NUDIX 85.0 12 0.00026 33.2 10.0 81 99-195 297-378 (405)
104 COG1194 MutY A/G-specific DNA 84.4 3 6.6E-05 37.4 6.2 48 67-116 235-285 (342)
105 KOG1689 mRNA cleavage factor I 84.0 2.8 6.1E-05 34.0 5.3 50 64-115 66-123 (221)
106 PF12535 Nudix_N: Hydrolase of 70.1 0.025 5.4E-07 37.7 -8.5 30 17-46 8-37 (58)
107 KOG4432 Uncharacterized NUDIX 64.3 9.8 0.00021 33.7 3.9 51 67-117 26-110 (405)
108 KOG1794 N-Acetylglucosamine ki 63.0 18 0.0004 32.0 5.4 49 69-117 14-64 (336)
109 PF14443 DBC1: DBC1 59.9 11 0.00025 29.0 3.2 37 80-116 9-57 (126)
110 PRK07198 hypothetical protein; 50.8 22 0.00048 32.6 4.0 41 75-116 158-202 (418)
111 PF07026 DUF1317: Protein of u 49.2 49 0.0011 22.0 4.4 21 91-111 22-44 (60)
112 COG2131 ComEB Deoxycytidylate 25.0 2.1E+02 0.0045 23.1 5.3 52 63-115 23-84 (164)
113 COG1069 AraB Ribulose kinase [ 23.7 78 0.0017 30.3 3.1 52 70-122 15-76 (544)
114 PF12471 GTP_CH_N: GTP cyclohy 23.2 91 0.002 25.7 3.0 40 71-111 150-193 (194)
115 COG5493 Uncharacterized conser 23.1 89 0.0019 26.1 2.9 44 91-135 109-152 (231)
116 PF00370 FGGY_N: FGGY family o 21.6 1.4E+02 0.0031 24.6 4.1 52 69-120 11-70 (245)
No 1
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.92 E-value=1.4e-23 Score=167.28 Aligned_cols=144 Identities=44% Similarity=0.824 Sum_probs=115.8
Q ss_pred CCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~ 136 (214)
..+|++|+++|+|.+|+|||++|.+.++.|++||| |++.+||.||++||||++. .++++....++.|++|...
T Consensus 5 ~~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~ 84 (156)
T PRK00714 5 DGYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRL 84 (156)
T ss_pred CCCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHH
Confidence 36899999999999999999999876699999999 9999999999999999984 4556666667788887654
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcccc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~~ 213 (214)
.. . ..+.+.++..+||+++..+....+.++. .+++|+.+++|++++++.+++.++++.+++++++.|+..|
T Consensus 85 ~~---~-~~~~~~~~~~~~fl~~~~~~~~~~~l~~--~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~~ 155 (156)
T PRK00714 85 VR---R-SKGVYRGQKQKWFLLRLTGDDSEINLNT--TSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARLL 155 (156)
T ss_pred hh---c-cCCcccCcEEEEEEEEecCCCccccCCC--CCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 21 1 2345667788999999865444444421 1346999999999999999999999999999999998765
No 2
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.91 E-value=1.5e-23 Score=165.09 Aligned_cols=139 Identities=52% Similarity=1.082 Sum_probs=110.0
Q ss_pred ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~ 138 (214)
+|++|+++|+|.+|+|||++|.+.++.|.+||| |++.+||+||++||||++. ..+++....+++|.+++...
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~- 80 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK- 80 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh-
Confidence 688999999999999999999887689999999 9999999999999999983 55666666667787765432
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~ 209 (214)
.+.+.+.+.++..++|++.+.+...++++.. .+++|+.+++|++++++.+++.++++.++.++++.|
T Consensus 81 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~ 147 (147)
T cd03671 81 --LKIWGGRYRGQEQKWFLFRFTGDDSEIDLNA--PEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVLKEF 147 (147)
T ss_pred --ccccCCcCCCEEEEEEEEEecCCCccccCCC--CCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHHHhC
Confidence 1233344567788899988875333444431 124699999999999999999999999999988764
No 3
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.84 E-value=3.4e-20 Score=145.78 Aligned_cols=133 Identities=20% Similarity=0.378 Sum_probs=89.8
Q ss_pred ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeee-eccceEEecCCchhh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLA-EVPYWLTYDFPPEVR 137 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~-~~~~~~~~~~p~~~~ 137 (214)
++.+|+++|+|.+|+|||++|.+.++.|++||| ||+.+||+||++||||++. ..+.- .......|.+.+..
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~- 84 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHW- 84 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhh-
Confidence 577899999999999999998776789999999 9999999999999999985 22110 00011112111100
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
.....++..++..++|++...++ ..+.. +|+.+++|++++++.++.. |..+.+++.++..++
T Consensus 85 ---~~~~~~~~~~~~~~~f~~~~~~~-~~~~~-------~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 147 (148)
T PRK09438 85 ---RHRYAPGVTRNTEHWFCLALPHE-RPVVL-------TEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA 147 (148)
T ss_pred ---hhccccccCCceeEEEEEecCCC-Ccccc-------CcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 00011122345668888876532 22222 3889999999999999866 777888887776654
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.5e-18 Score=132.28 Aligned_cols=113 Identities=21% Similarity=0.324 Sum_probs=78.0
Q ss_pred cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
|.+|+++|++.+|+|||++|.+. +|.|.+||| |++.+||+||++||||++. .++++.... .+...
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~----~~~~~-- 75 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDH----IIEEP-- 75 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEee----cccCC--
Confidence 78899999999899999998754 489999999 9999999999999999984 333332211 11100
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHH
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPV 201 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~ 201 (214)
-.+...++|++...++. .... +++|+.+++|++++++.+.+.+..+.+
T Consensus 76 ----------~~~~~~~~f~~~~~~~~--~~~~----~~~E~~~~~W~~~~~l~~~l~~~~~~~ 123 (125)
T cd04679 76 ----------PQHWVAPVYLAENFSGE--PRLM----EPDKLLELGWFALDALPQPLTRATRDA 123 (125)
T ss_pred ----------CCeEEEEEEEEeecCCc--cccC----CCccccEEEEeCHHHCCchhHHHHHHH
Confidence 01234456666654332 1111 235889999999999987666555443
No 5
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.77 E-value=5.9e-18 Score=133.06 Aligned_cols=111 Identities=18% Similarity=0.297 Sum_probs=74.3
Q ss_pred ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--c--eeeeeccceEEecCCc
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--A--EVLAEVPYWLTYDFPP 134 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~--~~l~~~~~~~~~~~p~ 134 (214)
.+.+|+++|+|.+|+|||++|.+. +|.|.+||| ||+.+||+||++||||++. . ++++.....+...+..
T Consensus 11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~ 90 (144)
T cd03430 11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFG 90 (144)
T ss_pred CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccccc
Confidence 367889999999999999999754 489999999 9999999999999999984 2 3444332211111000
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
. +...+....+|++....+ .+.. .++|+.+++|++++++..+
T Consensus 91 ~----------~~~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 91 D----------DFSTHYVVLGYVLKLSSN--ELLL-----PDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred C----------CCccEEEEEEEEEEEcCC--cccC-----CchhccEeEEecHHHHhcC
Confidence 0 001122345566655432 2221 3458999999999999864
No 6
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.76 E-value=7.8e-18 Score=128.42 Aligned_cols=119 Identities=24% Similarity=0.506 Sum_probs=82.1
Q ss_pred cceEEEEEEecC---CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSS---KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~---g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+++++++|++.+ ++|||++|.+. +.|.+||| ||+.+||.||++||||++.. ..++. +.|.++..
T Consensus 1 ~~~a~~ii~~~~~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~- 74 (131)
T cd03673 1 VLAAGGVVFRGSDGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT----IRYWFSSS- 74 (131)
T ss_pred CeeEEEEEEEccCCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE----EEEeccCC-
Confidence 457788888775 89999999874 89999999 99999999999999999842 22222 22322211
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF 206 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l 206 (214)
+.......++|.+...... ... .+++|+.+++|++++++.++.. +..+.++++++
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~--~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 75 ---------GKRVHKTVHWWLMRALGGE--FTP----QPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred ---------CCCcceEEEEEEEEEcCCC--ccc----CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 1123455677777765432 221 1245899999999999988766 55666666554
No 7
>PLN02325 nudix hydrolase
Probab=99.76 E-value=6.2e-18 Score=133.07 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=79.8
Q ss_pred CCCCCCccceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEe
Q 028086 60 DAPPEGYRRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTY 130 (214)
Q Consensus 60 ~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~ 130 (214)
.......+.+|+++|++ +|+|||++|.+.+ |.|.+||| ||+.+||+||++||||++. .++++.....+.
T Consensus 2 ~~~~~~p~~~v~~vi~~-~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~- 79 (144)
T PLN02325 2 ETGEPIPRVAVVVFLLK-GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFL- 79 (144)
T ss_pred CCCCCCCeEEEEEEEEc-CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceee-
Confidence 44555668888888876 4799999998643 79999999 9999999999999999984 334443222111
Q ss_pred cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHH
Q 028086 131 DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVY 202 (214)
Q Consensus 131 ~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~ 202 (214)
+.+. ..+....+|.+...+...... ..+++|+.+++|++++++......-.+.++
T Consensus 80 ~~~~-------------~~~~i~~~f~~~~~~~~~~~~----~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~~ 134 (144)
T PLN02325 80 EEPK-------------PSHYVTVFMRAVLADPSQVPQ----NLEPEKCYGWDWYEWDNLPEPLFWPLEKLV 134 (144)
T ss_pred cCCC-------------CcEEEEEEEEEEECCCCCCCC----cCCchhcCceEEEChHHCChhhhHHHHHHH
Confidence 1110 123345566666543221111 123456788999999999875543333333
No 8
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.1e-17 Score=127.58 Aligned_cols=113 Identities=23% Similarity=0.379 Sum_probs=73.4
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
.+|+++|+|.+|+|||+||...+|.|.+||| ||+.+||+||++||||++. ..++... .+.+.+...
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~~~~~--- 75 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQ----EAIFSEEFH--- 75 (125)
T ss_pred cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEE----EEeccCCCC---
Confidence 5678889998999999998655689999999 9999999999999999974 2322211 111111110
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHH
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPV 201 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~ 201 (214)
...+...+.|++...+. ++.. .+|+.+++|++++++.++.. +..+.+
T Consensus 76 ------~~~~~~~~~~~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 76 ------KPAHFVLFDFFARTDGT--EVTP------NEEIVEWEWVTPEEALDYPLNSFTRLL 123 (125)
T ss_pred ------CccEEEEEEEEEEecCC--cccC------CcccceeEEECHHHHhcCCCCHHHHHH
Confidence 00122233344444322 2222 24889999999999987755 444433
No 9
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=9e-18 Score=128.61 Aligned_cols=102 Identities=24% Similarity=0.421 Sum_probs=70.0
Q ss_pred eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+|+++|++++|+|||++|... +|.|.+||| |++.+||.||++||||++. ...++..... +.+...
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~--~~~~~~---- 76 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNT--YPYGGM---- 76 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecce--eeeCCc----
Confidence 678888999999999999764 489999999 9999999999999999984 3333322211 111110
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~ 191 (214)
-.....++|++.+.+.. ... +.+|+.+++|++++++.
T Consensus 77 --------~~~~~~~~~~~~~~~~~--~~~-----~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 77 --------EYDTLDLFFVCQVDDKP--IVK-----APDDVAELKWVVPQDIE 113 (130)
T ss_pred --------eeEEEEEEEEEEeCCCC--CcC-----ChHHhheeEEecHHHCC
Confidence 01223346677765321 111 23588999999999985
No 10
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.75 E-value=1.5e-17 Score=133.21 Aligned_cols=118 Identities=15% Similarity=0.284 Sum_probs=77.1
Q ss_pred cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc----eeeeeccceEEecCCch
Q 028086 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA----EVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~----~~l~~~~~~~~~~~p~~ 135 (214)
..+|.++|++++|+|||+||.+. +|.|++||| ||+++||+||++||||++.. ++++.. .+.+...
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~----~~~~~~~ 92 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW----QHFYDDN 92 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEE----Eeecccc
Confidence 45788888888899999999754 389999999 99999999999999999831 223221 1111110
Q ss_pred hhhhhccccCCCc-cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHH
Q 028086 136 VREKLKHQWGGDW-KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVY 202 (214)
Q Consensus 136 ~~~~l~~~~~~~~-~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~ 202 (214)
.. .+.+ .+...++|.++..++ ++.+ .++|+.+++|++++++..... +..+.++
T Consensus 93 ~~-------~~~~~~~~i~~~f~~~~~~g--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 148 (159)
T PRK15434 93 FS-------GTDFTTHYVVLGFRLRVAEE--DLLL-----PDEQHDDYRWLTPDALLASDNVHANSRAYF 148 (159)
T ss_pred cC-------CCccceEEEEEEEEEEecCC--cccC-----ChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence 00 0000 122345566665543 3333 235899999999999987533 5555554
No 11
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.74 E-value=1.3e-17 Score=126.96 Aligned_cols=122 Identities=29% Similarity=0.521 Sum_probs=84.9
Q ss_pred ccceEEEEEEecCCcEEEEeecCCC----CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDIP----DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~~----g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~ 136 (214)
+|++|+++|++.+|+|||++|.+.+ +.|.+||| ||+.+||+||+.||||++...... ...+.+..+...
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~--~~~~~~~~~~~~ 78 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL--LGLFSYPSPSGD 78 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE--EEEEEEEETTTE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc--ceeeeecccCCC
Confidence 4789999999999999999998874 89999999 999999999999999998411111 122222222111
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCH-HHHHHH
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKK-PVYKEV 205 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~-~~~~~~ 205 (214)
..+...++|.+........... +..|+.+++|++++++.++...... .+++.+
T Consensus 79 -----------~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~ 132 (134)
T PF00293_consen 79 -----------PEGEIVIFFIAELPSEQSEIQP-----QDEEISEVKWVPPDELLELLLNGRIRKIIPWL 132 (134)
T ss_dssp -----------SSEEEEEEEEEEEEEEESECHT-----TTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred -----------cccEEEEEEEEEEeCCccccCC-----CCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence 0134567777777654323333 2239999999999999988774433 355544
No 12
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.7e-17 Score=127.07 Aligned_cols=117 Identities=26% Similarity=0.330 Sum_probs=75.1
Q ss_pred ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~ 138 (214)
++++|++++++.+++|||++|... +.|.+||| ||+.+||+||++||||++. ...++.......|..++.
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~--- 81 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNG--- 81 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCC---
Confidence 467888888998899999999874 89999999 9999999999999999984 223322211111111111
Q ss_pred hhccccCCCccCce-EEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHH
Q 028086 139 KLKHQWGGDWKGQA-QKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPV 201 (214)
Q Consensus 139 ~l~~~~~~~~~~~~-~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~ 201 (214)
+. .... ..+|+...... .+.. ..+|+.+++|++++++.+++.+..+.+
T Consensus 82 -------~~-~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~W~~~~e~~~~~~~~~~~~ 130 (132)
T cd04677 82 -------DD-EQYIVTLYYVTKVFGG--KLVP-----DGDETLELKFFSLDELPELINPQHKEM 130 (132)
T ss_pred -------Cc-EEEEEEEEEEEeccCC--cccC-----CCCceeeEEEEChhHCccchhHHHHHh
Confidence 00 1122 23333333211 2122 345889999999999988776644443
No 13
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.74 E-value=3.7e-17 Score=128.15 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=76.9
Q ss_pred CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCch
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~ 135 (214)
.+.++|+++|+|.+++|||++|... ++.|++||| ||+++||+||++||||++. ...++. +.+.++.+
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~ 86 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT----YLGRFDDG 86 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE----EEEEcCCC
Confidence 4578899999998999999988653 489999999 9999999999999999984 222221 11222221
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
.....++|++...+....+. ..+|+.+++|++++++.+++..
T Consensus 87 -------------~~~~~~~f~~~~~~~~~~~~------~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 87 -------------VLVLRHVWLAEPEGQTLAPK------FTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred -------------cEEEEEEEEEEecCCccccC------CCCCEEEEEEECHHHhhhcccc
Confidence 12234667777653322222 1258999999999999988764
No 14
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.5e-17 Score=124.04 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=74.4
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ 143 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~ 143 (214)
+|.++|+|++|+|||++|... +.|.+||| ||+++||+||++||||+......... ..+.+.+. .
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~-~~~~~~~~-~-------- 70 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELL-GVYYHSAS-G-------- 70 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceE-EEEecCCC-C--------
Confidence 578889999999999998764 59999999 99999999999999999853111111 11111111 0
Q ss_pred cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHH
Q 028086 144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVY 202 (214)
Q Consensus 144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~ 202 (214)
.....++|.+....... . .+.+|+.+++|++++++.+.+.+..+..+
T Consensus 71 -----~~~~~~~f~~~~~~~~~--~-----~~~~E~~~~~w~~~~~l~~~~~~~~~~~~ 117 (120)
T cd04680 71 -----SWDHVIVFRARADTQPV--I-----RPSHEISEARFFPPDALPEPTTPATRRRI 117 (120)
T ss_pred -----CceEEEEEEecccCCCc--c-----CCcccEEEEEEECHHHCcccCChHHHHHh
Confidence 12234555555543211 1 13458999999999999987666544443
No 15
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=7.7e-17 Score=123.18 Aligned_cols=118 Identities=24% Similarity=0.466 Sum_probs=76.5
Q ss_pred cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
+.+|+++|+|++++|||++|... ++.|.+||| ||+.+||.||++||||+.. +..... .. .+.++..
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~-~~~~~~-~~-~~~~~~~----- 73 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT-EFVSVV-GF-RHAHPGA----- 73 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCc-ceeEEE-EE-EecCCCC-----
Confidence 56788999999999999987653 589999999 9999999999999999984 222111 11 1111111
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHH
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT 207 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~ 207 (214)
.+....+|++.+......+.. +++|+.+++|++++++.+. ++...+.+.+++
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~--~~~~~~~~~~~~ 125 (127)
T cd04670 74 --------FGKSDLYFICRLKPLSFDINF-----DTSEIAAAKWMPLEEYISQ--PITSEVNRLILD 125 (127)
T ss_pred --------cCceeEEEEEEEccCcCcCCC-----ChhhhheeEEEcHHHHhcc--hhHHHHHHHHHh
Confidence 123345566665432212222 3458889999999999654 344445554443
No 16
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.73 E-value=3.9e-17 Score=125.13 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=78.1
Q ss_pred ceEEEEEEec--CCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINS--SKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~--~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
+.|.|++++. +++|||++|.+. +|.|.+||| |++.+||+||++||||+.. ..++........+.+...
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~-- 79 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN-- 79 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC--
Confidence 5678888888 899999999875 799999999 9999999999999999984 333332211111111111
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHH
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPV 201 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~ 201 (214)
..+...++|++...+.. ... .++|+.+++|++++++.++.. +..+.+
T Consensus 80 ----------~~~~~~~~f~~~~~~~~-~~~------~~~E~~~~~W~~~~e~~~~~~~~~~~~~ 127 (129)
T cd04664 80 ----------GRVWTEHPFAFHLPSDA-VVT------LDWEHDAFEWVPPEEAAALLLWESNRRA 127 (129)
T ss_pred ----------ceEEEEeEEEEEcCCCC-ccc------CCccccccEecCHHHHHHHHcChhhhhh
Confidence 01234567777765432 111 235889999999999988766 444433
No 17
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.73 E-value=7e-17 Score=123.52 Aligned_cols=117 Identities=23% Similarity=0.385 Sum_probs=79.2
Q ss_pred cceEEEEEEecCC---cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSSK---KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~g---~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+++++++|++.++ +|||++|.+ +.|.+||| ||+.+||+||++||||++.. ..++.... .+.++..
T Consensus 2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~~- 76 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKE--TLNYQVR- 76 (130)
T ss_pred ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhcccee--EEEcccc-
Confidence 4567888876554 799999886 89999999 99999999999999999842 22211111 1222110
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF 206 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l 206 (214)
..+...++|++..... ..+..+ +|+.+++|++++++.++.. +..+.+++++.
T Consensus 77 -----------~~~~~~~~f~~~~~~~-~~~~~~------~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 77 -----------GKLKTVTYFLAELRPD-VEVKLS------EEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred -----------CcceEEEEEEEEeCCC-Cccccc------cceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 1234556777776521 122221 4889999999999998876 55666776653
No 18
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.73 E-value=1.2e-17 Score=131.65 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=71.2
Q ss_pred ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086 68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
++++++|+|++ ++|||++|... +.|++||| ||+.+||+||++||||++...... . . .|. ..
T Consensus 2 p~~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~-~--~~~--~~------ 68 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-K-D--DYI--EL------ 68 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-c-c--eee--ec------
Confidence 46788888875 69999998764 69999999 999999999999999998533221 0 1 111 00
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF 197 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 197 (214)
.+.+...++|++........... ...+|+.+++|++++++.++....
T Consensus 69 -----~~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 69 -----IIRGQNVKLYIVPGVPEDTPFEP----KTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred -----ccCCcEEEEEEEecCCCCcccCc----CChhhhheEEEeeHHHhhhhhhhc
Confidence 01133445555543322111111 123589999999999999876543
No 19
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.72 E-value=7.2e-17 Score=125.67 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=77.8
Q ss_pred cceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeec--cceE-EecCCch
Q 028086 67 RRNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEV--PYWL-TYDFPPE 135 (214)
Q Consensus 67 ~~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~--~~~~-~~~~p~~ 135 (214)
+..|+++|+|++ ++|||++|.+ .|.|.+||| |++++||.||++||||++... ..... .... .+..+..
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKR 80 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCC
Confidence 467888999987 8999999876 489999999 999999999999999997322 11100 0111 1111110
Q ss_pred hhhhhccccCCCccC-ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086 136 VREKLKHQWGGDWKG-QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF 206 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~-~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l 206 (214)
+.... .....|++....+. .... ..+|+.+++|++++++.++.. +..+.+++++|
T Consensus 81 ----------~~~~~~~~~~~y~~~~~~~~--~~~~----~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 81 ----------GVPGHLHLDLRFLAVAPADD--VAPP----KSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred ----------CCCCcEEEEEEEEEEccCcc--ccCC----CCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 00001 12334566544322 2110 235888999999999976654 45567777765
No 20
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.72 E-value=7e-17 Score=125.89 Aligned_cols=117 Identities=17% Similarity=0.337 Sum_probs=70.6
Q ss_pred ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeee--e--ccceE-EecCC
Q 028086 68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLA--E--VPYWL-TYDFP 133 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~--~--~~~~~-~~~~p 133 (214)
+.+.+.|++.+|+|||+||... +|.|++||| ||+.+||+||++||||++. .+.. . ....+ ...|+
T Consensus 4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~~~~~~~~~~~~~~~~~~~~ 82 (141)
T PRK15472 4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL-LLTEITPWTFRDDIRTKTYA 82 (141)
T ss_pred eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce-eeeeeccccccccceeEEec
Confidence 4555556666899999998653 489999999 9999999999999999973 1111 0 00000 01122
Q ss_pred chhhhhhccccCCCccCceEE-EEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086 134 PEVREKLKHQWGGDWKGQAQK-WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK 203 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~-~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~ 203 (214)
++. ..+..+ ++++.......++.+ .+|+.+++|++++++.++.. +..+.++.
T Consensus 83 ~~~------------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~~~ 136 (141)
T PRK15472 83 DGR------------KEEIYMIYLIFDCVSANRDVKI------NEEFQDYAWVKPEDLVHYDLNVATRKTLR 136 (141)
T ss_pred CCC------------ceeEEEEEEEEEeecCCCcccC------ChhhheEEEccHHHhccccccHHHHHHHH
Confidence 111 111112 222333222223333 25899999999999998766 44444443
No 21
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1e-16 Score=121.39 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=76.6
Q ss_pred cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccc-eEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPY-WLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~-~~~~~~p~~~~~ 138 (214)
|++|+++|+|++|+|||++|... |.|.+||| |++.+||.||++||||++. .++++.... ...+.++.+.
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD-- 78 (129)
T ss_pred cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC--
Confidence 67889999998899999999875 89999999 9999999999999999973 222211111 0112222211
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc-CCHHHH
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVY 202 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~~ 202 (214)
..+...++|++...++ .... ..+|..+++|++++++.++..+ ..+.++
T Consensus 79 ---------~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~w~~~~el~~~~~~~~~~~~~ 127 (129)
T cd04676 79 ---------VRQYLDITFRCRVVGG--ELRV-----GDDESLDVAWFDPDGLPPLLMHPSMRLRI 127 (129)
T ss_pred ---------cEEEEEEEEEEEeeCC--eecC-----CCCceeEEEEEChhhCccccCCHhHHHHh
Confidence 1123445555555432 2211 2347889999999999987663 334443
No 22
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.3e-16 Score=122.18 Aligned_cols=107 Identities=25% Similarity=0.382 Sum_probs=74.7
Q ss_pred cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~ 137 (214)
|.+|+++|+|.+|+|||++|... ++.|.+||| ||+.+||.||++||||++.. ..++.... .++..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~----~~~~~-- 75 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND----VFEEE-- 75 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE----EeCCC--
Confidence 67899999999899999999852 589999999 99999999999999999842 22222111 11110
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
..+....+|.+........... .+.+|+.+++|++++++.++
T Consensus 76 ----------~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 76 ----------GKHYVTIFVKAEVDDGEAEPNK----MEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred ----------CcEEEEEEEEEEeCCCCcccCC----CCCceeCceEEeCHHHCCCc
Confidence 1133456677776543222221 13457889999999999875
No 23
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=120.29 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=70.7
Q ss_pred eEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~ 138 (214)
+|.++|++ +|+|||++|.+. +|.|.+||| ||+.+||+||++||||+... .+ ... ..+.+.++.
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~-~~~-~~~~~~~~~---- 74 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL-RLA-HTMHRRTED---- 74 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhhe-EEE-EEEEecCCC----
Confidence 56666665 689999998753 489999999 99999999999999999842 22 111 111111111
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 198 (214)
..+...++|++....+. +.. .+++|+.+++|++++++...+.++.
T Consensus 75 ---------~~~~~~~~f~~~~~~~~--~~~----~~~~e~~~~~W~~~~~l~~~~~~~~ 119 (120)
T cd04683 75 ---------IESRIGLFFTVRRWSGE--PRN----CEPDKCAELRWFPLDALPDDTVDYV 119 (120)
T ss_pred ---------CceEEEEEEEEEeecCc--ccc----CCCCcEeeEEEEchHHCcchhcccc
Confidence 01234456666543221 111 1345888999999999988777654
No 24
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.70 E-value=2.4e-16 Score=119.66 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=72.4
Q ss_pred eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+|.++|+++ ++|||++|.+. ++.|.+||| |++.+||+||++||||++. ...++.... .+..+...
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~--~~~~~~~~--- 75 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASR--YFYSPDGD--- 75 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEE--EEECCCCC---
Confidence 567777775 89999999875 489999999 9999999999999999983 223332211 11111110
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
...+...++|.+........ .. ...+|+.+++|++++++.....
T Consensus 76 -------~~~~~~~~~f~~~~~~~~~~-~~----~~~~e~~~~~W~~~~~l~~~~~ 119 (128)
T cd04684 76 -------YDAHHLCVFYDARVVGGALP-VQ----EPGEDSHGAAWLPLDEAIERLL 119 (128)
T ss_pred -------eeccEEEEEEEEEEecCccc-cC----CCCCCceeeEEECHHHhhccCC
Confidence 01244567777777643211 01 1235788999999999985544
No 25
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=2.2e-16 Score=122.06 Aligned_cols=116 Identities=18% Similarity=0.293 Sum_probs=77.5
Q ss_pred eEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhcc
Q 028086 69 NVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKH 142 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~ 142 (214)
+|.+.|++.+++|||++|... +|.|.+||| ||+++||+||++||||+....+ ... ....+.+
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~-~~l-~~~~~~~---------- 69 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI-RYV-GSQPWPF---------- 69 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee-EEE-eecCCCC----------
Confidence 567777787799999999765 489999999 9999999999999999984221 111 0011111
Q ss_pred ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---Cc--cCCHHHHHHHHHhh
Q 028086 143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AV--DFKKPVYKEVFTVF 209 (214)
Q Consensus 143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~--~~~~~~~~~~l~~~ 209 (214)
.....++|++....+ .+.. +++|+.+++|++++++.++ +. +-.+.+.+.++..+
T Consensus 70 ------~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 128 (131)
T cd03429 70 ------PSSLMLGFTAEADSG--EIVV-----DDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW 128 (131)
T ss_pred ------CceEEEEEEEEEcCC--cccC-----CchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHHH
Confidence 122345666666532 2222 3458899999999999875 33 44455566555543
No 26
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.6e-16 Score=120.47 Aligned_cols=114 Identities=27% Similarity=0.343 Sum_probs=75.7
Q ss_pred ecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccccCCCcc
Q 028086 76 NSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWK 149 (214)
Q Consensus 76 ~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~ 149 (214)
+.+++|||++|... +|.|.+||| ||+.+||+||++||||++...+.........|..+.. .
T Consensus 11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~-------------~ 77 (131)
T cd04695 11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDN-------------R 77 (131)
T ss_pred CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCc-------------e
Confidence 45679999998863 589999999 9999999999999999985332111000111221110 1
Q ss_pred CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 150 GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 150 ~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.....+|++...... .+.. .+|+.+++|++++++.++.. +..+.+++.+-..|
T Consensus 78 ~~~~~~f~~~~~~~~-~~~~------~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd04695 78 ILMAPVFVGFVPPHQ-EVVL------NHEHTEYRWCSFAEALELAPFPGQRALYDHVWRYF 131 (131)
T ss_pred EEEEEEEEEEecCCC-cccc------CchhcccEecCHHHHHHhcCChhHHHHHHHHHhhC
Confidence 122345555543221 2222 24899999999999998877 78888988887654
No 27
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.69 E-value=2.6e-16 Score=121.65 Aligned_cols=109 Identities=24% Similarity=0.240 Sum_probs=75.9
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~ 138 (214)
+++|++++++++++|||++|.+. ++.|.+||| |++.+||+||++||||++...+.. . .. +.+..+
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~-~~--~~~~~~--- 74 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-L-GS--FYPSPG--- 74 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-E-ee--EecCCc---
Confidence 57889999999999999987543 368999999 999999999999999998532211 1 11 111111
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
......++|++...+....+.. +++|+.+++|++++++.+++..
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 75 ---------FSDERIHLFLAEDLSPGEEGLL-----DEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred ---------ccCccEEEEEEEcccccccCCC-----CCCCeeEEEEecHHHHHHHHHc
Confidence 1233456677766543211222 3468999999999999987764
No 28
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=6.2e-16 Score=117.80 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=69.6
Q ss_pred EEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086 70 VGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ 143 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~ 143 (214)
|+++|++++|+|||++|.+. .+.|.+||| ||+.+||+||++||||++. .+.... . .+.++
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~-~--~~~~~---------- 68 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIF-L--IVNQN---------- 68 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEE-E--EEeeC----------
Confidence 57778887799999998754 378999999 9999999999999999984 221111 1 11111
Q ss_pred cCCCccCceEEEEEEEEeCCcceeeccC-C---CCCcCceeeEEEeChhHHhhcCc
Q 028086 144 WGGDWKGQAQKWFLLKFTGKEEEINLLG-D---KSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~-~---~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+...++|.++..++. +.... . ..++.++.+++|++++++..+..
T Consensus 69 ------~~~~~~f~~~~~~g~--~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~ 116 (121)
T cd04669 69 ------GRTEHYFLARVISGK--LGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL 116 (121)
T ss_pred ------CcEEEEEEEEEECCe--ecCCCchhhcccCCCCceEEEEEEHHHcccCCC
Confidence 223567787766442 22110 0 01134567899999999987644
No 29
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.5e-16 Score=117.85 Aligned_cols=101 Identities=25% Similarity=0.360 Sum_probs=67.6
Q ss_pred eEEEEEEecCCcEEEEeecCC-----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 69 NVGICLINSSKKIFAASRLDI-----PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~-----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+++++++ ++|+|||++|... +|.|.+||| |++++||+||++||||++.. .+.. ...+.++.
T Consensus 3 v~~~~~~-~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~----~~~~~~~~-- 75 (122)
T cd04682 3 VALALLI-GDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPW----FRVYPSAS-- 75 (122)
T ss_pred eEEEEEE-cCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccce----eEecccCC--
Confidence 3444444 4599999999754 489999999 99999999999999999842 1111 11122110
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
.....++|++...... .... +.+|+.+++|++++++.+..
T Consensus 76 ------------~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 76 ------------PPGTEHVFVVPLTARE-DAIL-----FGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred ------------CCceEEEEEEEEecCC-Cccc-----cCchhheeecccHHHHhhcc
Confidence 1334567777665432 1222 34689999999999997654
No 30
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=3.7e-16 Score=122.37 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=74.8
Q ss_pred ccceEEEEEEecC---CcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCc--cee--eeeccceE
Q 028086 66 YRRNVGICLINSS---KKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSS--AEV--LAEVPYWL 128 (214)
Q Consensus 66 ~~~~v~vvI~~~~---g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~--~~~--l~~~~~~~ 128 (214)
|+++|.++|+|.+ ++||+++|+.. ||.|++ ||| ||+.+||+||++||||++. ..+ ++..
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~---- 76 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTF---- 76 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEE----
Confidence 5789999999987 89999999763 589999 588 9999999999999999973 122 2221
Q ss_pred EecCC-chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 129 TYDFP-PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 129 ~~~~p-~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+.+. .+. .......++|++........+.+ +++|+.+++|++++++.+++.
T Consensus 77 ~~~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 77 KIEYDHIGK----------LIDREFHHVYLYELKVPLEEFTL-----QKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred EEeccccCC----------CccceEEEEEEEeccCChhhcCC-----ChhHhheEEEECHHHHHHHHH
Confidence 12211 100 00123445666665431112222 345899999999999987764
No 31
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=8.4e-16 Score=117.74 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=68.5
Q ss_pred eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
.|+++++|.+|+|||++|.+. ++.|.+||| |++.+||+||++||||++. .+.+.. +..+
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~------~~~~------ 69 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSV------EEQG------ 69 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEE------EccC------
Confidence 467888898999999998754 489999999 9999999999999999984 222211 1100
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~ 191 (214)
.+...++|.++..++ .+... ..+..|+.+++|++++++.
T Consensus 70 ---------~~~~~~~f~a~~~~g--~~~~~--~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 70 ---------GSWFRFVFTGNITGG--DLKTE--KEADSESLQARWYSNKDLP 108 (123)
T ss_pred ---------CeEEEEEEEEEEeCC--eEccC--CCCCcceEEEEEECHHHCC
Confidence 123455677776543 22221 1234578899999999993
No 32
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.67 E-value=6.4e-16 Score=124.01 Aligned_cols=108 Identities=23% Similarity=0.347 Sum_probs=74.0
Q ss_pred ccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec--
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD-- 131 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~-- 131 (214)
++++|+++|+|++|+|||++|.+. ||.|.+| || |++++||+||++||||+... .++ ...+.|.
T Consensus 29 ~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~---~~~~~~~~~ 105 (165)
T cd02885 29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV---LPRFRYRAP 105 (165)
T ss_pred ceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc---cceEEEEEE
Confidence 388999999999999999998763 5899997 56 99999999999999999842 222 0112222
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
++... ......++|.+...+. ... +.+|+.+++|++++++.+++.
T Consensus 106 ~~~~~-----------~~~~i~~~f~~~~~~~---~~~-----~~~Ev~~~~w~~~~el~~~~~ 150 (165)
T cd02885 106 DDGGL-----------VEHEIDHVFFARADVT---LIP-----NPDEVSEYRWVSLEDLKELVA 150 (165)
T ss_pred cCCCc-----------eeeEEEEEEEEEeCCC---CCC-----CccceeEEEEECHHHHHHHHH
Confidence 11111 1122345565554321 111 345899999999999988766
No 33
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.67 E-value=1.4e-15 Score=117.17 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=67.3
Q ss_pred EEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhc
Q 028086 70 VGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
|+++| ..++++||++|.+. ++.|.+||| ||+.+||.||++||||++. ..++.. +.+..+...
T Consensus 3 v~~ii-~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~~----- 72 (134)
T cd03675 3 VAAVV-ERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGI----YQWTAPDSD----- 72 (134)
T ss_pred EEEEE-EECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEE----EEeecCCCC-----
Confidence 44444 56789999998764 379999999 9999999999999999984 222221 222222110
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.....++|++...+...... ..+|+.++.|++++++.++..
T Consensus 73 -------~~~~~~~f~~~~~~~~~~~~------~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 73 -------TTYLRFAFAAELLEHLPDQP------LDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred -------eeEEEEEEEEEECCCCCCCC------CCCCceeeEEEeHHHHHhhhh
Confidence 11123456666543211111 234789999999999998874
No 34
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.3e-15 Score=116.57 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=71.9
Q ss_pred cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~ 138 (214)
|.+|+++|++ +++|||++|.+. ++.|.+||| |++++||+||++||||+.. .++.... .+......
T Consensus 1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~----~~~~~~~~-- 73 (128)
T cd04687 1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVR----EYIGHNPT-- 73 (128)
T ss_pred CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEE----EEeccCcc--
Confidence 5677888776 679999998754 368999999 9999999999999999984 2222211 11110000
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+.+...+...++|++....+.. .... ....+|..+++|++++++.++..
T Consensus 74 ----~~~~~~~~~i~~~f~~~~~~~~~-~~~~--~~~~~~~~~~~W~~~~~l~~~~~ 123 (128)
T cd04687 74 ----SELPGHFHQVELMFECKIKSGTP-AKTP--SKPDPNQIGVEWLKLKELGDIPL 123 (128)
T ss_pred ----ccCCCceeEEEEEEEEEECCCCc-cccc--CCCCCCEEeeEEEcHHHhCcccc
Confidence 00111124455777777754321 0110 01223556899999999987655
No 35
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=6.3e-16 Score=118.47 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=70.8
Q ss_pred ceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~ 137 (214)
+++.++|+|.+|+|||++|... +|.|++ ||| |++.+||+||++||||++...+.. . . .|.+....
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~-~--~~~~~~~~- 75 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-L-G--LFYYDTDG- 75 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-e-e--EEEecCCC-
Confidence 4688999999999999998743 588999 577 999999999999999998543211 1 1 12221110
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.....++|++...+ ++.+ +.+|+.+++|++++++.+++.
T Consensus 76 -----------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 76 -----------NRVWGKVFSCVYDG---PLKL-----QEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred -----------ceEEEEEEEEEECC---CCCC-----CHhHhhheEEcCHHHHHHHhh
Confidence 01123455555432 2222 245889999999999988654
No 36
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.5e-15 Score=114.56 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=67.8
Q ss_pred eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+|+++|++ +++|||++|.+. ++.|.+||| |++++||.||++||||++. ...++.. .+.++...
T Consensus 2 ~v~~ii~~-~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~----~~~~~~~~--- 73 (122)
T cd04673 2 AVGAVVFR-GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVV----DVIERDAA--- 73 (122)
T ss_pred cEEEEEEE-CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEE----EEeeccCC---
Confidence 46677776 479999998764 478999999 9999999999999999984 2333322 11111100
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+...+...+.|.+....+ ++. ..+|+.+++|++++++.++..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~--~~~------~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 74 -----GRVEFHYVLIDFLCRYLGG--EPV------AGDDALDARWVPLDELAALSL 116 (122)
T ss_pred -----CccceEEEEEEEEEEeCCC--ccc------CCcccceeEEECHHHHhhCcC
Confidence 0000122334444444322 221 235889999999999988765
No 37
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=1.5e-15 Score=115.55 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=70.1
Q ss_pred cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+.+|+++|+++ ++|||++|.. .+.|.+||| ||+.+||+||++||||+.. ..+++.... ..+.++.
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~-~~~~~~~----- 73 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDR-NKHHPPP----- 73 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecc-ccccCCC-----
Confidence 56788888875 8999999876 589999999 9999999999999999974 122221110 0111100
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
...+....+|++..... .+.. .+|..+++|++++++.++..+
T Consensus 74 -------~~~~~~~~~f~~~~~~~--~~~~------~~E~~~~~W~~~~el~~l~~~ 115 (123)
T cd04672 74 -------QPYQVYKLFFLCEILGG--EFKP------NIETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred -------CceEEEEEEEEEEecCC--cccC------CCceeeeEEECHHHCcccccC
Confidence 00112334555665432 2222 248899999999999877653
No 38
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.65 E-value=1.3e-15 Score=117.66 Aligned_cols=114 Identities=21% Similarity=0.268 Sum_probs=74.1
Q ss_pred eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+..++|.+ +|+|||++|... ++.|.+||| |++.+||+||++||||++. ..+++. +.+..+..
T Consensus 3 ~~~~~i~~-~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~---- 73 (137)
T cd03427 3 TTLCFIKD-PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGI----IKFPFPGE---- 73 (137)
T ss_pred EEEEEEEE-CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEE----EEEEcCCC----
Confidence 34455555 489999999875 589999999 9999999999999999983 233322 22222210
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHH
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFT 207 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~ 207 (214)
......++|++....+ .+.. .+|..+++|++++++..+.. +..+.+++.+++
T Consensus 74 --------~~~~~~~~f~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 126 (137)
T cd03427 74 --------EERYGVFVFLATEFEG--EPLK------ESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE 126 (137)
T ss_pred --------CcEEEEEEEEECCccc--ccCC------CCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence 0122344444443322 2221 23556899999999987655 666778877775
No 39
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.4e-15 Score=114.78 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=71.3
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
.|.++|++ +++|||++|.. .+.|.+||| |++.+||.||++||||++. ...++..... +.+..
T Consensus 3 ~v~~vi~~-~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~--~~~~~------- 71 (126)
T cd04688 3 RAAAIIIH-NGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENI--FTYNG------- 71 (126)
T ss_pred EEEEEEEE-CCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEe--eccCC-------
Confidence 34555555 45999999876 589999999 9999999999999999983 3333332211 11111
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
...+...++|++...++...........+..|+.+++|++++++..+..
T Consensus 72 -----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 120 (126)
T cd04688 72 -----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKL 120 (126)
T ss_pred -----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCcc
Confidence 1124456788888765432110000001345899999999999986544
No 40
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.64 E-value=2.5e-15 Score=114.51 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=66.8
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
..|+++|+ .+|+|||++|.+ .+.|.+||| ||+.+||+||++||||++. ..+++.... .+..+.
T Consensus 2 ~~~~~vi~-~~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~--~~~~~~------ 71 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIEN--QWHEKG------ 71 (125)
T ss_pred eEEEEEEE-eCCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEee--eeccCC------
Confidence 45677776 478999999876 479999999 9999999999999999984 333332211 111111
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~ 191 (214)
...+...++|++........... ..++|+.+++|++++++.
T Consensus 72 ------~~~~~~~~~f~~~~~~~~~~~~~----~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 72 ------VRTHEINHIFAVESSWLASDGPP----QADEDHLSFSWVPVSDLS 112 (125)
T ss_pred ------ceEEEEEEEEEEEcccccccCCc----cCccceEEEEEccHHHcc
Confidence 11233445666665432111111 134578999999999964
No 41
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.64 E-value=1.8e-15 Score=123.57 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEec-
Q 028086 63 PEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYD- 131 (214)
Q Consensus 63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~- 131 (214)
...++++|+++|++.+|+|||+||... ||.|.+| || ||+++||+||++||||++...+.... ..+.|.
T Consensus 30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~ 108 (184)
T PRK03759 30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVL-PDFRYRA 108 (184)
T ss_pred CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccccc-ceEEEEE
Confidence 345788999999999999999998642 5788876 45 99999999999999999853322111 112221
Q ss_pred -CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 132 -FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 132 -~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
++++. ......++|++...+ .+.+ +++|+.+++|++++++.+++.
T Consensus 109 ~~~~~~-----------~~~~~~~vf~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~i~ 154 (184)
T PRK03759 109 TDPNGI-----------VENEVCPVFAARVTS---ALQP-----NPDEVMDYQWVDPADLLRAVD 154 (184)
T ss_pred ecCCCc-----------eeeEEEEEEEEEECC---CCCC-----ChhHeeeEEEECHHHHHHHHH
Confidence 12111 112344566666542 2222 345899999999999988765
No 42
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.3e-15 Score=115.35 Aligned_cols=99 Identities=26% Similarity=0.388 Sum_probs=65.5
Q ss_pred EEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhh
Q 028086 70 VGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
|+++|++ +++|||+||... +|.|++||| ||+++||+||++||||++...+. ....+.++..
T Consensus 3 v~~vi~~-~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~----~l~~~~~~~~----- 72 (117)
T cd04691 3 VVGVLFS-DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYT----YLCSLYHPTS----- 72 (117)
T ss_pred EEEEEEE-CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccce----EEEEEeccCC-----
Confidence 4555555 489999998643 489999999 99999999999999999842221 1111111111
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.....++|++....+ .+. .+|+.+++|++++++.....
T Consensus 73 --------~~~~~~~~~~~~~~~--~~~-------~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 73 --------ELQLLHYYVVTFWQG--EIP-------AQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred --------CeEEEEEEEEEEecC--CCC-------cccccccEEcCHHHcchhhh
Confidence 123456666654432 221 24888999999999976543
No 43
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.64 E-value=5.2e-15 Score=113.94 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=72.7
Q ss_pred EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
+.++|++.+|+|||++|.+. +|.|++||| |++.+||+||++||||++. ..++.. +.+.+...
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~----~~~~~~~~---- 77 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVAS----HQREVSGR---- 77 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEE----EEEecCCc----
Confidence 44445567789999998653 389999999 8999999999999999983 222221 12221110
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
....++|.+....+ ++. ..|+.+++|++++++.++.. +..+.+++.+++.
T Consensus 78 ----------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 128 (135)
T PRK10546 78 ----------RIHLHAWHVPDFHG--ELQ-------AHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL 128 (135)
T ss_pred ----------EEEEEEEEEEEecC--ccc-------ccccceeEEcCHHHcccCCCCcCcHHHHHHHHHh
Confidence 11223344433221 111 13677899999999998766 6667788877664
No 44
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.1e-15 Score=116.46 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=68.4
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccceEEecCCchhhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE---VLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~~~~~~~p~~~~~~l 140 (214)
+|+++|++ +|+|||+++.+. +.|.+||| |++.+||+||++||||+.... .++.........++..
T Consensus 2 ~~~~ii~~-~~~vLLv~~~~~-~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~----- 74 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKRY-GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDA----- 74 (131)
T ss_pred cEEEEEEE-CCEEEEEEEcCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCC-----
Confidence 56777776 589999998763 78999999 999999999999999997422 2232211111111111
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
...+...++|++........+.++. .+.++..+++|++++++.+.
T Consensus 75 ------~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 75 ------DIFHMISYYYLCEVDAELGAQQLED--YEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ------ceeEEEEEEEEEEEcCCcCCcccch--hhHhcCCCcEEecHHHHHHh
Confidence 0123346778888764322222320 11112245899999999754
No 45
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.5e-15 Score=116.08 Aligned_cols=103 Identities=27% Similarity=0.357 Sum_probs=67.0
Q ss_pred eEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 69 NVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+|.+++++++|+|||++|... +|.|++| || |++ +||+||++||||++.. .+. ....+.++...
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~----~~~~~~~~~~~ 76 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR----PLFRYFFEAEG 76 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE----EEEEEEeecCC
Confidence 578888999999999998753 4899998 77 999 9999999999999842 221 11122221100
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
....++|.+... ...+.. +.+|+.+++|++++++.+++..
T Consensus 77 -------------~~~~~~~~~~~~--~~~~~~-----~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 77 -------------FDDYYLFYADVE--IGKLIL-----QKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred -------------eEEEEEEEecCc--cccccc-----CHHHhhhEEEeCHHHHHHHHhc
Confidence 111122222211 112222 3458999999999999988763
No 46
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.63 E-value=2.5e-15 Score=119.88 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCccee-eeeccceEEe-
Q 028086 63 PEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSAEV-LAEVPYWLTY- 130 (214)
Q Consensus 63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~~~-l~~~~~~~~~- 130 (214)
...++++|+++|+|.+|+|||+||+.. ||.|++| || | .+||+||++|||||+.... +... ..+.|
T Consensus 23 ~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~-~~~~~~ 99 (158)
T TIGR02150 23 ETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVL-PRFSYR 99 (158)
T ss_pred CCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEc-ceEEEE
Confidence 467799999999999999999999763 6999997 45 8 4999999999999984221 1111 11122
Q ss_pred -cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 131 -DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 131 -~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.++++ .....++|.+...+ .+.+ +.+|+.+++|++++++.+++.
T Consensus 100 ~~~~~g-------------~~~~~~~f~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 100 ARDAWG-------------EHELCPVFFARAPV---PLNP-----NPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred EecCCC-------------cEEEEEEEEEecCC---cccC-----ChhHeeeEEEeCHHHHHHHHh
Confidence 22111 12234555555432 2222 245999999999999998776
No 47
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.63 E-value=3.2e-15 Score=115.73 Aligned_cols=104 Identities=20% Similarity=0.365 Sum_probs=71.3
Q ss_pred cCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc-ceeeeec-cceEEecCCchhhhhhccccCCCc
Q 028086 77 SSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS-AEVLAEV-PYWLTYDFPPEVREKLKHQWGGDW 148 (214)
Q Consensus 77 ~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~-~~~l~~~-~~~~~~~~p~~~~~~l~~~~~~~~ 148 (214)
+++++||+++... .|.|.|||| ||+.+||+||++||||++. ..+++.. ...+.|.++.... .+..
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-------~~~~ 83 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-------NEGI 83 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-------cccC
Confidence 3568999998753 379999999 9999999999999999973 2333322 2334555553320 0112
Q ss_pred cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 149 KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 149 ~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+...++|.++..++. +.+. +|+.+++|++++++.+++.
T Consensus 84 ~~~~~~~f~~~~~~g~--~~~~------~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 84 VGAKVFFFKARYMSGQ--FELS------QNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cccEEEEEEEEEecCc--cccC------CCcceeEecCHHHHHhhcC
Confidence 3456788888876542 2322 4889999999999998654
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.6e-15 Score=112.94 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=67.9
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce-eeeeccceEEecCCchhhhhhcc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE-VLAEVPYWLTYDFPPEVREKLKH 142 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~-~l~~~~~~~~~~~p~~~~~~l~~ 142 (214)
.|++++++.+|++||++|.+ .+.|.+||| |++++||+||++||||++... .+... . .+.++...
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~-~--~~~~~~~~------ 71 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYL-G--TFRAPAAN------ 71 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEE-E--EEeccccc------
Confidence 35677778889999999876 489999999 999999999999999998422 01111 1 11111100
Q ss_pred ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+. .....++|++.... .+. ..+|+.+++|++++++.+...
T Consensus 72 --~~~-~~~~~~~f~~~~~~---~~~------~~~e~~~~~W~~~~e~~~~~~ 112 (118)
T cd04690 72 --EPG-VDVRATVYVAELTG---EPV------PAAEIEEIRWVDYDDPADDRL 112 (118)
T ss_pred --CCC-cEEEEEEEEEcccC---CcC------CCchhhccEEecHHHcccccc
Confidence 000 12244556665542 222 234888999999999865544
No 49
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.62 E-value=6.3e-15 Score=112.83 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=69.7
Q ss_pred eEEEEEEecC---CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--c-eeeeeccceEEecCCchhh
Q 028086 69 NVGICLINSS---KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--A-EVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 69 ~v~vvI~~~~---g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~-~~l~~~~~~~~~~~p~~~~ 137 (214)
.+++++++.+ ++|||++|.+. +.|.+||| ||+.+||+||++||||++. . ..++. +.+.++..
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~----~~~~~~~~-- 74 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGR----FEYRKRSK-- 74 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEE----EEeeecCC--
Confidence 3566666543 68999998764 89999999 9999999999999999983 2 33332 22222210
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+...+...++|++...+.. .. .+..|+.+++|++++++.+++.
T Consensus 75 --------~~~~~~~~~~f~~~~~~~~---~~----~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 75 --------NRPPRCEVAVFPLEVTEEL---DE----WPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred --------CCCceEEEEEEEEEEeccc---cC----CcccCceEEEEecHHHHHHhcC
Confidence 0012335577777765421 11 1224678899999999988765
No 50
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.8e-15 Score=115.19 Aligned_cols=111 Identities=24% Similarity=0.391 Sum_probs=73.9
Q ss_pred ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceee---eeccceEEecCCch
Q 028086 68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVL---AEVPYWLTYDFPPE 135 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l---~~~~~~~~~~~p~~ 135 (214)
++++++|++.+|+|||+++.+. ++.|.+||| |++.+||.||++||||+....+. ...... +.++..
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~--f~~~~~ 78 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAA--FTFLGV 78 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEE--EEecCc
Confidence 4688999999999999998653 479999999 99999999999999999852322 211111 222211
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
..++..+||+++....+.... .....+.+++.+++|++++++.+.
T Consensus 79 ------------~~~~~~~~f~~~~~~~~~~~~-~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 79 ------------DGRQEERFFLARTPRTEPSPA-GWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred ------------cceeeEEEEEEEcCCccccCC-CCChhhhhhcccccCCCHHHHhhC
Confidence 123456788888754221111 001122345678999999999875
No 51
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.5e-15 Score=115.92 Aligned_cols=114 Identities=25% Similarity=0.362 Sum_probs=70.6
Q ss_pred eEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc------eeeeeccceEEecCC
Q 028086 69 NVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSA------EVLAEVPYWLTYDFP 133 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~------~~l~~~~~~~~~~~p 133 (214)
+|+++++|.+++|||+||... +|.|.+||| |++.+||+||++||||+... ++++.. .+.|+
T Consensus 3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~----~~~~~ 78 (143)
T cd04694 3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW----ESVYP 78 (143)
T ss_pred EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee----ccccc
Confidence 567788899999999999743 589999999 99999999999999999842 222221 11222
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCc--ceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKE--EEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~--~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.... .+.........||+....... ..+.+. ..++|+.+++|++++++.+++.
T Consensus 79 ~~~~------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 79 PLLS------RGLPKRHHIVVYILVKSSETHQQLQARLQ---PDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred cccC------CCcccceeEEEEEEEEecccccccccccc---CChhhccceEeeCHHHHHHHHH
Confidence 2110 000001223334333332211 111111 1346999999999999988765
No 52
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.8e-15 Score=110.22 Aligned_cols=96 Identities=21% Similarity=0.424 Sum_probs=65.6
Q ss_pred EEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccccCCC
Q 028086 73 CLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGD 147 (214)
Q Consensus 73 vI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~ 147 (214)
+|...+++|||++|.. |.|.+||| |++.+||.||++||||++...+. ....+. .
T Consensus 5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~----~~~~~~--~------------- 63 (112)
T cd04667 5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL----YLFHVD--G------------- 63 (112)
T ss_pred EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceE----EEEEEe--C-------------
Confidence 3445678999999875 89999999 99999999999999999843221 111111 1
Q ss_pred ccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC
Q 028086 148 WKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF 197 (214)
Q Consensus 148 ~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 197 (214)
.....++|++.+.... ... ..+|+.+++|++++++.++..+.
T Consensus 64 -~~~~~~~f~~~~~~~~-~~~------~~~e~~~~~W~~~~el~~~~~~~ 105 (112)
T cd04667 64 -GSTRHHVFVASVPPSA-QPK------PSNEIADCRWLSLDALGDLNASA 105 (112)
T ss_pred -CCEEEEEEEEEcCCcC-CCC------CchheeEEEEecHHHhhhcccch
Confidence 0123456666654321 111 23588999999999999887753
No 53
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.61 E-value=9.6e-15 Score=119.05 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCccceEEEEEEecCCcEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP 133 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p 133 (214)
...++++.++|+|++|+|||++|... ||.| .+||| ||+.+||+|||+||||+....+.. . ..+.+..+
T Consensus 34 ~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~-~~~~~~~~ 111 (180)
T PRK15393 34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-H-GQFYFEDE 111 (180)
T ss_pred CCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-c-eeEEecCC
Confidence 33578888889999999999999753 3556 57899 999999999999999998432211 1 11222211
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 198 (214)
. .....++|.+...+ ...+ +++|+.+++|++++++.++...+.
T Consensus 112 ~--------------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~~~~~ 154 (180)
T PRK15393 112 N--------------CRVWGALFSCVSHG---PFAL-----QEEEVSEVCWMTPEEITARCDEFT 154 (180)
T ss_pred C--------------ceEEEEEEEEEeCC---CCCC-----ChHHeeEEEECCHHHHhhhhhhcC
Confidence 0 01122344444321 2222 346999999999999998754443
No 54
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.61 E-value=1.3e-14 Score=124.42 Aligned_cols=147 Identities=11% Similarity=0.129 Sum_probs=89.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccCCCCCCccceEEEEEEecCCcEEEEeecCCC-CCeecCCC-----CCHH
Q 028086 29 TSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPK 102 (214)
Q Consensus 29 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~-g~W~lPgG-----Es~~ 102 (214)
.+..||.+-.+..... ......|.. ........+.++|.++| .++++|||++|.+.+ |.|.+||| ||++
T Consensus 98 ~~~fC~~CG~~~~~~~--~~~~~~C~~--c~~~~yp~~~paViv~V-~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~e 172 (256)
T PRK00241 98 SHRFCGYCGHPMHPSK--TEWAMLCPH--CRERYYPRIAPCIIVAV-RRGDEILLARHPRHRNGVYTVLAGFVEVGETLE 172 (256)
T ss_pred cCccccccCCCCeecC--CceeEECCC--CCCEECCCCCCEEEEEE-EeCCEEEEEEccCCCCCcEeCcccCCCCCCCHH
Confidence 4567777766554321 112222321 11112223345655555 456899999987654 89999999 9999
Q ss_pred HHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCcee
Q 028086 103 VAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG 180 (214)
Q Consensus 103 eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~ 180 (214)
+||+||++||||++.. +.++.. .+.+| +...+.|.+...++ ++.+ +++|+.
T Consensus 173 eAa~REv~EEtGl~v~~~~~~~s~----~~~~p----------------~~lm~~f~a~~~~~--~~~~-----~~~Ei~ 225 (256)
T PRK00241 173 QCVAREVMEESGIKVKNLRYVGSQ----PWPFP----------------HSLMLGFHADYDSG--EIVF-----DPKEIA 225 (256)
T ss_pred HHhhhhhhhccCceeeeeEEEEeE----eecCC----------------CeEEEEEEEEecCC--cccC-----CcccEE
Confidence 9999999999999842 222221 12222 23456677776543 2333 235899
Q ss_pred eEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086 181 EWKWMSPEQILERAVDFKKPVYKEVFTVF 209 (214)
Q Consensus 181 ~~~Wv~~~el~~~~~~~~~~~~~~~l~~~ 209 (214)
+++|++++++..+ +....+...+++.+
T Consensus 226 ~a~W~~~del~~l--p~~~sia~~li~~~ 252 (256)
T PRK00241 226 DAQWFRYDELPLL--PPSGTIARRLIEDT 252 (256)
T ss_pred EEEEECHHHCccc--CCchHHHHHHHHHH
Confidence 9999999998754 34445555555544
No 55
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.61 E-value=1.1e-14 Score=114.89 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=73.0
Q ss_pred CCccceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP 134 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~ 134 (214)
.....+|+++++.. |+|||+||.+.| |.|.+||| ||+++||.||++||||++. .++++ .|+.+.
T Consensus 7 ~~p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~------v~~~~~ 79 (145)
T COG1051 7 RTPLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLA------VFDDPG 79 (145)
T ss_pred CCcceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEE------EecCCC
Confidence 34567778777754 499999999876 88999999 9999999999999999983 22222 233332
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHH
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVY 202 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~ 202 (214)
.. +. .+...++|+.....+ +.... +.++..++.|++++++..+.. .+...-+
T Consensus 80 rd---------~r-~~~v~~~~~~~~~~g--~~~~~----~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l 133 (145)
T COG1051 80 RD---------PR-GHHVSFLFFAAEPEG--ELLAG----DGDDAAEVGWFPLDELPELPLPLAFTLADL 133 (145)
T ss_pred CC---------Cc-eeEEEEEEEEEecCC--CcccC----ChhhHhhcceecHhHcccccccccccHHHH
Confidence 10 00 012223333333222 11111 223677899999999987644 3444433
No 56
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.61 E-value=6.8e-15 Score=117.18 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=68.3
Q ss_pred eEEEEEEecC--CcEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCc
Q 028086 69 NVGICLINSS--KKIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPP 134 (214)
Q Consensus 69 ~v~vvI~~~~--g~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~ 134 (214)
+|.+++.+.+ ++|||++|... +|.|++||| |++.+||+||++||||++.. ..++...... .
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~--- 78 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYY--T--- 78 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCcc--c---
Confidence 4555566655 68999999763 589999999 79999999999999999842 2333221110 0
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
..+...+.|++..... ..+.+ +++|+.+++|++++++.+..
T Consensus 79 -------------~~~~~v~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 79 -------------RSGFVVTPVVGLVPPP-LPLVL-----NPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred -------------cCCCEEEEEEEEECCC-CCCCC-----CHHHhheeEEEcHHHHhCcC
Confidence 0123345566655432 12232 34589999999999998764
No 57
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=9.1e-15 Score=111.09 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=43.6
Q ss_pred ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086 68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS 117 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~ 117 (214)
.+|+++|++++|+|||++|... +|.|++||| |++.+||+||++||||++.
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~ 60 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE
Confidence 4577788887799999999754 579999999 9999999999999999974
No 58
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.60 E-value=1.6e-14 Score=109.58 Aligned_cols=112 Identities=22% Similarity=0.373 Sum_probs=72.2
Q ss_pred ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~ 137 (214)
..++++|++.+|+|||+||... +|.|++||| |++.+||.||++||||++.. ..++. +.+.++..
T Consensus 5 ~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~----~~~~~~~~-- 78 (129)
T PRK10776 5 QIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK----LEYEFPDR-- 78 (129)
T ss_pred EEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE----EEeeCCCc--
Confidence 3445566677889999999764 489999999 89999999999999999732 22221 22333211
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF 206 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l 206 (214)
....++|.+..... .+. ..|..+++|++++++..... +..+++++.++
T Consensus 79 ------------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 79 ------------HITLWFWLVESWEG--EPW-------GKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred ------------EEEEEEEEEEEECC--ccC-------CccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 11233444433211 111 13667889999999988755 44566666554
No 59
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.60 E-value=1.4e-14 Score=111.47 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=69.3
Q ss_pred CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhh
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~ 137 (214)
..+.+|+++|++ +++|||++|... .|.|.+||| |++++||+||++||||++. ...... ..+..+.
T Consensus 11 ~~~~~v~~ii~~-~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~-~~~~~~---~~~~~~~--- 82 (130)
T cd04511 11 NPKIIVGCVPEW-EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV-EIDGLY---AVYSVPH--- 82 (130)
T ss_pred CCcEEEEEEEec-CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE-EeeeEE---EEEecCC---
Confidence 335666777665 489999998653 389999999 9999999999999999984 222111 1222221
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~ 191 (214)
.+...++|+++..+. .+.. ..|..+++|++++++.
T Consensus 83 -----------~~~~~~~f~~~~~~~--~~~~------~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 83 -----------ISQVYMFYRARLLDL--DFAP------GPESLEVRLFTEEEIP 117 (130)
T ss_pred -----------ceEEEEEEEEEEcCC--cccC------CcchhceEEECHHHCC
Confidence 134567788887643 2222 2477889999999996
No 60
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.59 E-value=2.2e-14 Score=127.72 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred ceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~ 138 (214)
..|.++|+ .+|+|||++|.+.+ |.|.+||| |++++||+||++||||++. ..+.+.......+++|....
T Consensus 204 vtv~avv~-~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~- 281 (340)
T PRK05379 204 VTVDAVVV-QSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL- 281 (340)
T ss_pred eEEEEEEE-ECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC-
Confidence 45566665 47899999998654 78999999 9999999999999999983 22222222223445443210
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---CccCCHHHHHHHH
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AVDFKKPVYKEVF 206 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~~~~~~~~~~~l 206 (214)
......++|++....+. ...+. ..+|..+++|++++++..+ .......+++.++
T Consensus 282 ---------~~~~i~~~f~~~~~~~~-~~~~~----~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 282 ---------RGRTITHAFLFEFPAGE-LPRVK----GGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred ---------CCcEEEEEEEEEecCCc-cCccC----CCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 01234567777665332 11121 2358899999999999864 2233344554443
No 61
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.55 E-value=6.7e-14 Score=104.85 Aligned_cols=109 Identities=26% Similarity=0.414 Sum_probs=70.0
Q ss_pred EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086 70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
+.++|++++|++||++|.+. +|.|.+||| |++.+||.||+.||||++... .... ..+.+.++.
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~-~~~~-~~~~~~~~~------- 74 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV-GELL-ATVEHDYPD------- 74 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec-cceE-EEEEeeCCC-------
Confidence 45566677799999998754 589999999 899999999999999997321 1111 122233221
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK 203 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~ 203 (214)
.....++|.+..... ... ..|..++.|++++++.++.. +..+++++
T Consensus 75 -------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 121 (124)
T cd03425 75 -------KRVTLHVFLVELWSG--EPQ-------LLEHQELRWVPPEELDDLDFPPADVPIVA 121 (124)
T ss_pred -------CeEEEEEEEEeeeCC--Ccc-------cccCceEEEeeHHHcccCCCCcccHHHHH
Confidence 122334455544322 111 23678899999999988765 34445544
No 62
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.4e-13 Score=104.57 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=69.6
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~ 136 (214)
+..++++|++++|+|||++|.+. .|.|++||| |++.+||+||+.||||++. ...+.. +.+.+..
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~----~~h~~~~-- 77 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL----EYEFYPR-- 77 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE----EEEECCC--
Confidence 34455666688889999999764 389999998 8999999999999999983 112221 1122211
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHH
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYK 203 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~ 203 (214)
.....++|.+...++ ... ..+..+++|++++++.++..|. .+++++
T Consensus 78 ------------~~~~~~~~~~~~~~~--~~~-------~~~~~~~~W~~~~~l~~~~~p~~~~~~~~ 124 (128)
T TIGR00586 78 ------------HITLWFWLLERWEGG--PPG-------KEGQPEEWWVLVGLLADDFFPAANPVIIK 124 (128)
T ss_pred ------------cEEEEEEEEEEEcCC--CcC-------cccccccEEeCHHHCCccCCCCCCHHHHH
Confidence 011233444444322 111 1245678999999999887754 344443
No 63
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.52 E-value=1.4e-13 Score=111.81 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCCccceEEEE--EEecC--CcEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCccee--eeecc
Q 028086 62 PPEGYRRNVGIC--LINSS--KKIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSAEV--LAEVP 125 (214)
Q Consensus 62 ~~~~~~~~v~vv--I~~~~--g~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~~~--l~~~~ 125 (214)
....++++|.+. +.|.+ ++||++||+.. ||.| .+||| |++.+||+||++||||++...+ +...
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~- 105 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPV- 105 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceec-
Confidence 345568888865 45665 89999999765 6999 48888 9999999999999999984221 1111
Q ss_pred ceEEecCC-chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 126 YWLTYDFP-PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 126 ~~~~~~~p-~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
..+.|.+. .. +....+..++|.+..... ..+.+ +++|+.++.|++++++.+++.
T Consensus 106 g~~~~~~~~~~----------~~~~~e~~~~f~~~~~~~-~~~~~-----~~~Ev~~~~~~~~~el~~~l~ 160 (180)
T cd03676 106 GVVSYLREGEA----------GGLQPEVEYVYDLELPPD-FIPAP-----QDGEVESFRLLTIDEVLRALK 160 (180)
T ss_pred cEEEEEEEcCC----------CcEeeeEEEEEEEEcCCC-CeeCC-----CCCcEeEEEEECHHHHHHHHH
Confidence 11222221 11 011234456665554321 12222 356999999999999988765
No 64
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.52 E-value=2.1e-13 Score=116.25 Aligned_cols=136 Identities=21% Similarity=0.322 Sum_probs=79.6
Q ss_pred CCCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-----CC-CC-----------------HHHHHHHHHHHHhC
Q 028086 62 PPEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-----QN-ED-----------------PKVAALRELKEETG 114 (214)
Q Consensus 62 ~~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-----gG-Es-----------------~~eAA~REl~EETG 114 (214)
....+++++.++|+|.+|+|||+||+.. ||.|+.. ++ |+ ..+||+|||+||||
T Consensus 51 ~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElG 130 (247)
T PLN02552 51 PRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELG 130 (247)
T ss_pred CCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhC
Confidence 3467899999999999999999999875 5899554 33 22 67899999999999
Q ss_pred CCcce--e--eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhH
Q 028086 115 VSSAE--V--LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQ 189 (214)
Q Consensus 115 l~~~~--~--l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~e 189 (214)
|.... + +... ..+.|..+.... .--.+.+. ....++| +........+.+ +++|+.+++|+++++
T Consensus 131 I~~~~~~~~~l~~~-~~~~y~~~~~~~----~~~~~~~~E~e~~~v~-~~~~~~~~~l~l-----q~eEV~~~~wvs~~e 199 (247)
T PLN02552 131 IPAEDVPVDQFTFL-TRLHYKAADDVT----HGPDGKWGEHELDYLL-FIRPVRDVKVNP-----NPDEVADVKYVNREE 199 (247)
T ss_pred CCccccccccceee-eEEEEecccccc----cccCCCccceEEEEEE-EEEecCCCcccC-----CHHHhheEEEEeHHH
Confidence 98321 1 1111 112222211100 00001111 2233333 222212223444 357999999999999
Q ss_pred HhhcC--------ccCCHHHHHHHHHh
Q 028086 190 ILERA--------VDFKKPVYKEVFTV 208 (214)
Q Consensus 190 l~~~~--------~~~~~~~~~~~l~~ 208 (214)
+.+++ .|.-+.+++..+..
T Consensus 200 l~~~~~~~~~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 200 LKEMMRKESGLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred HHHHHhhcCCcccCHHHHHHHHHHHHH
Confidence 99873 34444455554443
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.50 E-value=3.7e-13 Score=99.88 Aligned_cols=105 Identities=26% Similarity=0.461 Sum_probs=70.3
Q ss_pred eEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l 140 (214)
++++++++.+++|||++|.+. +|.|.+||| |++.+||+||++||+|+... .... .+.+..+..
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~----~~~~~~~~~----- 72 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLG----VYEVESPDE----- 72 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEE----EEEeeccCC-----
Confidence 567788888799999998874 589999999 99999999999999999742 2211 122221110
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
......++|.+........ . ....|..+++|++++++.++..
T Consensus 73 -------~~~~~~~~~~~~~~~~~~~--~----~~~~e~~~~~w~~~~~l~~~~~ 114 (123)
T cd02883 73 -------GEHAVVFVFLARLVGGEPT--L----LPPDEISEVRWVTLDELPALAL 114 (123)
T ss_pred -------CceEEEEEEEEEeCCCCcC--C----CCCCccceEEEEcHHHCccccc
Confidence 0123445566665533211 0 1234778899999999987544
No 66
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.46 E-value=6.1e-13 Score=108.73 Aligned_cols=103 Identities=24% Similarity=0.240 Sum_probs=69.7
Q ss_pred eEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhh
Q 028086 69 NVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~ 138 (214)
+|+++.++++++|||+++.+. ...|++||| |++++||+||++||||+.... .++.. ...++
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~------~~~~~--- 119 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKEL------SLAPS--- 119 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE------ecCCC---
Confidence 566676778889999998654 267999999 999999999999999998532 23221 11111
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+.....++|++..... .. . ..++.|..++.|++++++.+++.
T Consensus 120 ---------~~~~~~~~f~a~~~~~--~~-~---~~~e~E~i~~~~~~~~e~~~~~~ 161 (185)
T PRK11762 120 ---------YFSSKMNIVLAEDLYP--ER-L---EGDEPEPLEVVRWPLADLDELLA 161 (185)
T ss_pred ---------ccCcEEEEEEEEcccc--cc-C---CCCCCceeEEEEEcHHHHHHHHH
Confidence 1234556666653211 11 1 12345677899999999988766
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.44 E-value=1.1e-12 Score=107.84 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=66.7
Q ss_pred ccceEEEEEEe--cCCcEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086 66 YRRNVGICLIN--SSKKIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD 131 (214)
Q Consensus 66 ~~~~v~vvI~~--~~g~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~ 131 (214)
.+.+|+++.+. .++.||+.+|... +|.|++||| |++++||+||++||||+.. ..+++..... +.
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~--~~ 106 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPV--DS 106 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeee--ec
Confidence 35566666553 3458998886543 489999999 5699999999999999984 3344433211 11
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
. .+...+.+++.+... .... .+++|+.++.|++++++.++.
T Consensus 107 ~----------------~~~~~~~~v~~~~~~-~~~~-----~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 107 S----------------TGYQVTPVVGIIPPD-LPYR-----ANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred c----------------CCcEEEEEEEEECCC-CCCC-----CChhhhheEEEEeHHHHhCcc
Confidence 1 122334444444321 1111 245689999999999998764
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.43 E-value=7e-13 Score=108.63 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=72.8
Q ss_pred ceEEEEEEec-CCcEEEEeecCC--------CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086 68 RNVGICLINS-SKKIFAASRLDI--------PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP 133 (214)
Q Consensus 68 ~~v~vvI~~~-~g~vLL~rR~~~--------~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p 133 (214)
.+|++++++. +++|||+++.+. +..|++||| |++++||+||++||||+....+.. . ..+...
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~-~---~~~~~~ 120 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRK-L---LSFYSS 120 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEE-E---EEEEcC
Confidence 4566777765 479999997652 368899999 999999999999999998533211 1 111111
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
+ ++.....++|+++..+... .... +.+++|..+..|++++++.+++..
T Consensus 121 ~------------g~~~~~~~~f~a~~~~~~~-~~~~--~~~~~E~ie~~~~~~~e~~~~~~~ 168 (185)
T TIGR00052 121 P------------GGVTELIHLFIAEVDDNQA-AGIG--GGADEEEIEVLHLVFSQALQWIKE 168 (185)
T ss_pred C------------CCCcEEEEEEEEEEchhhc-CCCC--CCCCccceEEEEeCHHHHHHHHHc
Confidence 1 2245667888888654311 1111 123345667999999999988763
No 69
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.42 E-value=1e-12 Score=101.22 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=38.9
Q ss_pred eEEEEEEecC---CcEEEEeec------CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086 69 NVGICLINSS---KKIFAASRL------DIPDSWQMPQN-----EDPKVAALRELKEETGVSS 117 (214)
Q Consensus 69 ~v~vvI~~~~---g~vLL~rR~------~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~ 117 (214)
++++++++.+ .+|||++|. ...+.|++||| |++.+||+||++||||+..
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~ 64 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV 64 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence 4566666422 379999862 22489999999 9999999999999999974
No 70
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.38 E-value=4.8e-12 Score=105.06 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred ceEEEEEEec-CCcEEEEeecCCC--------CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086 68 RNVGICLINS-SKKIFAASRLDIP--------DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP 133 (214)
Q Consensus 68 ~~v~vvI~~~-~g~vLL~rR~~~~--------g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p 133 (214)
.+|+++.+++ +++|+|+++.+.+ -.|++|+| |++++||+|||.||||+...++.. ...+...
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~----l~~~~~s 125 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP----VLSYLAS 125 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE----EEEEEcC
Confidence 4566776776 4799999987764 25999999 999999999999999998533211 1111111
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+ ++..+..++|+++....... ... ...++.|..++.|++++++.+++.
T Consensus 126 p------------g~~~e~~~~fla~~~~~~~~-~~~-~~~de~E~i~v~~~~~~e~~~~~~ 173 (202)
T PRK10729 126 P------------GGTSERSSIMVGEVDATTAS-GIH-GLADENEDIRVHVVSREQAYQWVE 173 (202)
T ss_pred C------------CcCceEEEEEEEEEcchhcc-cCC-CCCCCCCceEEEEEcHHHHHHHHH
Confidence 1 23466778888875321100 100 012445777899999999998876
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.38 E-value=5.8e-12 Score=110.44 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=70.8
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+..+.++|++.+|+|||++|... +|.|++||| |++.+||.||++||||+... ..+.. ..+.++..
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~----~~h~~~~~- 79 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLIT----VRHDYPDK- 79 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEE----EEEEcCCC-
Confidence 34455566677789999998654 489999998 89999999999999999832 11211 12222211
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHH
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEV 205 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~ 205 (214)
....++|.+....+ .. ...|..+++|++++++.++.. +..+++++.+
T Consensus 80 -------------~~~i~~y~~~~~~~--~~-------~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 80 -------------RVRLDVRRVTAWQG--EP-------HGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred -------------eEEEEEEEEEEecC--cc-------cCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 11233444433221 11 123677889999999988755 3445555544
No 72
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.38 E-value=6.7e-12 Score=103.35 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred ceEEEEEEec-CCcEEEEeecCCC---------CCeecCCC----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086 68 RNVGICLINS-SKKIFAASRLDIP---------DSWQMPQN----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP 133 (214)
Q Consensus 68 ~~v~vvI~~~-~g~vLL~rR~~~~---------g~W~lPgG----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p 133 (214)
.+|+|++++. +++|+|+++.+.+ -.|++|+| +++++||+|||+||||+....+... ..+ |+
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~~p~~aA~REL~EETGy~a~~~~~l----~~~-~~ 120 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKL----FEL-YM 120 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCCCHHHHHHHHHHHhhCCccceEEEe----eEE-Ec
Confidence 4566777775 6799999987653 25899999 7899999999999999985333211 111 11
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
. +++..+..+.|+++..... .... ...++.|..++.|+|++++.+++.
T Consensus 121 s-----------pG~s~e~~~lf~a~~~~~~-~~~~--~~~de~E~iev~~~~~~e~~~~i~ 168 (191)
T PRK15009 121 S-----------PGGVTELIHFFIAEYSDSQ-RANA--GGGVEDEDIEVLELPFSQALEMIK 168 (191)
T ss_pred C-----------CcccCcEEEEEEEEECchh-cccC--CCCCCCceEEEEEEcHHHHHHHHH
Confidence 1 1235667788888764211 1111 112356778899999999998876
No 73
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.31 E-value=7.8e-12 Score=97.15 Aligned_cols=127 Identities=25% Similarity=0.402 Sum_probs=78.4
Q ss_pred CCCCccceEEEEEEecCC---cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086 62 PPEGYRRNVGICLINSSK---KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD 131 (214)
Q Consensus 62 ~~~~~~~~v~vvI~~~~g---~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~ 131 (214)
.+.++|..++++.+..++ +|||+.-++.+..|.+|+| |+..+||+||.+||.|+.. .++++... .+.
T Consensus 4 ~~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~---~~~ 80 (145)
T KOG2839|consen 4 DPAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE---DFL 80 (145)
T ss_pred CCCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh---hcc
Confidence 347889999988886554 7999998887789999999 9999999999999999982 23222211 111
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
..... .+ ...+.|.+... . ++..- .....|+.+.+|+.++|+.+.+. ..++..|++.++.
T Consensus 81 ~~~~~----------~~--~k~~~~~l~v~-e--~le~w--p~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~ 141 (145)
T KOG2839|consen 81 SKKHR----------TK--PKGVMYVLAVT-E--ELEDW--PESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQF 141 (145)
T ss_pred Chhhc----------cc--ccceeehhhhh-h--hcccC--hhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11100 00 11122333222 1 11111 11233588999999999998776 2233445544443
No 74
>PLN02709 nudix hydrolase
Probab=99.28 E-value=3.7e-11 Score=100.80 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=64.1
Q ss_pred cEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCC
Q 028086 80 KIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGD 147 (214)
Q Consensus 80 ~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~ 147 (214)
+|||.+|+.. +|.|+|||| +++.+||+||++||+||.. +++++......+ +
T Consensus 52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t---~-------------- 114 (222)
T PLN02709 52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN---K-------------- 114 (222)
T ss_pred EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC---C--------------
Confidence 7999999764 599999999 5789999999999999984 567766543211 1
Q ss_pred ccCceEEEEEEEEeCC-cceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 148 WKGQAQKWFLLKFTGK-EEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 148 ~~~~~~~~fl~~~~~~-~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
.+...+-|++.+... ...+.+ +++|+.++.|+|++++.+.
T Consensus 115 -sg~~V~P~V~~~~~~~~~~~~~-----np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 115 -KGMSVAPVIGFLHDKKAFKPLP-----NPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred -CCCEEEEEEEEecCCCCccccC-----ChhhhheeEEecHHHHhCC
Confidence 133456666655421 112222 3469999999999998753
No 75
>PLN02791 Nudix hydrolase homolog
Probab=99.28 E-value=3.2e-11 Score=116.47 Aligned_cols=116 Identities=19% Similarity=0.354 Sum_probs=76.0
Q ss_pred CCccceEEEEEEec-CCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCc-ceeeeeccceEEec
Q 028086 64 EGYRRNVGICLINS-SKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSS-AEVLAEVPYWLTYD 131 (214)
Q Consensus 64 ~~~~~~v~vvI~~~-~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~-~~~l~~~~~~~~~~ 131 (214)
..++++|.++|+|. +|+|||+||+.. ||.|++ +|| |+..+||+||++||+||.. ...+... ..+.+.
T Consensus 29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l-~~~~~~ 107 (770)
T PLN02791 29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELL-FVFLQE 107 (770)
T ss_pred CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeee-eeEEEE
Confidence 56899999999996 689999999764 699999 688 9999999999999999973 1111111 111111
Q ss_pred CCchhhhhhccccCCCcc-CceEEEEEEEEeCCcc--eeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 132 FPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~--~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
.. .+.+.+. +...++|++...+..+ ++.+ +++|+.+++|++++|+.+++
T Consensus 108 ~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~l-----q~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 108 CV---------INDGKFINNEYNDVYLVTTLDPIPLEAFTL-----QESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred ee---------ccCCCcceeeEEEEEEEEECCCCCcccCCC-----ChhhhheeEEEcHHHHHHHH
Confidence 00 0111111 2344556655433211 2222 46799999999999998554
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.28 E-value=3.6e-11 Score=91.71 Aligned_cols=93 Identities=20% Similarity=0.148 Sum_probs=61.6
Q ss_pred EEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhcc
Q 028086 70 VGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKH 142 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~ 142 (214)
|.+++++ ++++||+++.+ +.|.+||| |++++||.||++||||+... ..++. |.++..
T Consensus 3 v~vi~~~-~~~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~------~~~~~~------- 66 (118)
T cd04665 3 VLVICFY-DDGLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGY------YQVDLF------- 66 (118)
T ss_pred EEEEEEE-CCEEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEE------EEecCC-------
Confidence 4555554 57899999874 68999999 99999999999999999852 22322 111111
Q ss_pred ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHH
Q 028086 143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQI 190 (214)
Q Consensus 143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el 190 (214)
.......+|.+...... .... ..|+.+..|++.+..
T Consensus 67 -----~~~~~~~~y~a~~~~~~-~~~~------~~E~~~~~~~~~~~~ 102 (118)
T cd04665 67 -----ESGFETLVYPAVSAQLE-EKAS------YLETDGPVLFKNEPE 102 (118)
T ss_pred -----CCcEEEEEEEEEEEecc-cccc------cccccCcEEeccCCc
Confidence 01334556666665332 2222 248999999998765
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.27 E-value=8.6e-11 Score=90.64 Aligned_cols=46 Identities=30% Similarity=0.465 Sum_probs=37.0
Q ss_pred EEEEEEecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086 70 VGICLINSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS 117 (214)
Q Consensus 70 v~vvI~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~ 117 (214)
|.++|.+.++ +||+.+... +.|.+||| |++.+||+||++||||++.
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 5666666654 666666544 56999999 9999999999999999984
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1e-10 Score=89.20 Aligned_cols=49 Identities=29% Similarity=0.194 Sum_probs=38.0
Q ss_pred ceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086 68 RNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS 117 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~ 117 (214)
..++++|...+ ++||++|... +|.|.+||| |++.+||.||++||||+..
T Consensus 5 ~~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~ 60 (118)
T cd04674 5 PVVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV 60 (118)
T ss_pred EEEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 44455554544 4677777654 389999999 9999999999999999984
No 79
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.16 E-value=4.3e-10 Score=89.78 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=68.5
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
.|.++++. ++++||+++.. ..|++||| ||+++||+||++||||+... ..++. |....+
T Consensus 26 ~V~ii~~~-~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~------~~~~~~------ 90 (156)
T TIGR02705 26 HVLVIPRY-KDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQ------YEVEGE------ 90 (156)
T ss_pred EEEEEEEE-CCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEE------EEecCC------
Confidence 45555454 55899998875 46999999 99999999999999999742 22322 111111
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEE-EeChhHHhhcCcc-------CCHHHHHHHHHhh
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWK-WMSPEQILERAVD-------FKKPVYKEVFTVF 209 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~-Wv~~~el~~~~~~-------~~~~~~~~~l~~~ 209 (214)
......+.|+++..... . .+|..+.. +++++++.+.+.. .+..++.+.++.+
T Consensus 91 ------~~~~~~~vf~A~~~~~~----~------~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~ 150 (156)
T TIGR02705 91 ------STDFVKDVYFAEVSALE----S------KDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERA 150 (156)
T ss_pred ------CcEEEEEEEEEEEeccc----c------CCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHH
Confidence 12334566777665321 1 12555556 7999999776552 1345555555543
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.14 E-value=8.7e-10 Score=83.32 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=38.5
Q ss_pred eEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHH-HHHHHHHHHhCCCcc
Q 028086 69 NVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKV-AALRELKEETGVSSA 118 (214)
Q Consensus 69 ~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~e-AA~REl~EETGl~~~ 118 (214)
.+.+++.... ++||+.+|....+.|.+||| |++.+ ||+||++||||+...
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 3444444433 78999998875459999999 67787 999999999999853
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.11 E-value=8.4e-10 Score=90.46 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=32.6
Q ss_pred cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086 80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS 116 (214)
Q Consensus 80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~ 116 (214)
+||+++|.. +|.|.+||| |++.+||+||++||||+.
T Consensus 50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 788899876 599999999 999999999999999764
No 82
>PLN03143 nudix hydrolase; Provisional
Probab=99.11 E-value=1.5e-09 Score=94.63 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=70.7
Q ss_pred eEEEEEE-ecCCc--EEEEeecCCC---CCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeecc------ceE
Q 028086 69 NVGICLI-NSSKK--IFAASRLDIP---DSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVP------YWL 128 (214)
Q Consensus 69 ~v~vvI~-~~~g~--vLL~rR~~~~---g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~------~~~ 128 (214)
+|+|+++ +.+++ |+|+++.+.+ ..|++||| |++.+||+||++||||+.. .++..... ..-
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~ 209 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCR 209 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCce
Confidence 5666554 54565 9999988753 58899999 5799999999999999973 23322110 001
Q ss_pred EecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceee-ccC--C-CCCcCceeeEEEeChhHHhhcCccCC
Q 028086 129 TYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEIN-LLG--D-KSEKPEFGEWKWMSPEQILERAVDFK 198 (214)
Q Consensus 129 ~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~-l~~--~-~~~~~E~~~~~Wv~~~el~~~~~~~~ 198 (214)
.|..| +...+..++|++.-......+. +.. . ..++.|..++.|++++++.++..+.+
T Consensus 210 v~psp-------------G~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~k 270 (291)
T PLN03143 210 MFPSP-------------GGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAK 270 (291)
T ss_pred EEecC-------------CccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHH
Confidence 12222 2234555666655432111110 000 0 12456777899999999988876554
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.7e-10 Score=99.08 Aligned_cols=102 Identities=22% Similarity=0.370 Sum_probs=69.7
Q ss_pred cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~ 138 (214)
-++|-++|.+ ++++||.++.+. +|.+..-+| ||+++|+.||++||+||++.+ ..+. +.| .||...+
T Consensus 144 dP~vIv~v~~-~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~S-QPW---PfP~SLM- 217 (279)
T COG2816 144 DPCVIVAVIR-GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGS-QPW---PFPHSLM- 217 (279)
T ss_pred CCeEEEEEec-CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEec-cCC---CCchhhh-
Confidence 3555555554 445888887654 589999998 999999999999999998533 3332 222 3454432
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
.-|...+.++ ++..+ ..|+.+++|++.+|+...+.+
T Consensus 218 ---------------igf~aey~sg--eI~~d-----~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 218 ---------------LGFMAEYDSG--EITPD-----EGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred ---------------hhheeeeccc--cccCC-----cchhhhccccCHhHHhhhcCC
Confidence 3355666654 35553 369999999999996655553
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.02 E-value=2.6e-10 Score=98.83 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=42.3
Q ss_pred ccceEEEEEEecCCc-EEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc
Q 028086 66 YRRNVGICLINSSKK-IFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA 118 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~-vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~ 118 (214)
.-+.|..+|++++|+ .||.|+.+. +|.|..++| ||++|||+||++||||++..
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceee
Confidence 346677778888875 555554444 499999999 99999999999999999853
No 85
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=6.4e-10 Score=96.09 Aligned_cols=121 Identities=25% Similarity=0.339 Sum_probs=83.7
Q ss_pred cccccCCCCCCccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeee
Q 028086 55 SSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAE 123 (214)
Q Consensus 55 ~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~ 123 (214)
..++..+.+...+.+|++.|+|.+++||+++..+. .|.|-+|+| |++.++|+||++||||++. .++++.
T Consensus 103 e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~ 182 (295)
T KOG0648|consen 103 EAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAF 182 (295)
T ss_pred cccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHH
Confidence 33466666677788999999999999999986443 499999999 9999999999999999973 222221
Q ss_pred ccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 124 VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 124 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
...+ + ..+ -....+.||++.+..-.-+++. ...|+..+.|+++++......-
T Consensus 183 r~~H---~--~~~-----------~~~ksd~f~~c~L~p~s~~i~~-----~~~ei~~~~Wmp~~e~v~qp~~ 234 (295)
T KOG0648|consen 183 RRAH---N--ATF-----------GLIKSDMFFTCELRPRSLDITK-----CKREIEAAAWMPIEEYVSQPLV 234 (295)
T ss_pred Hhhh---c--chh-----------hcccccceeEEEeeccccccch-----hHHHHHHHhcccHHHhhccccc
Confidence 1110 0 000 0124567888888643223332 3457888899999988776653
No 86
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.94 E-value=3e-09 Score=85.23 Aligned_cols=110 Identities=21% Similarity=0.365 Sum_probs=74.2
Q ss_pred ccceEEEEEEecCCcEEEEeecCC----CCCeec-----CC-CCCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC-
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQM-----PQ-NEDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF- 132 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-----Pg-GEs~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~- 132 (214)
-+++.+++|+|++|++|++||+.. |+.|.- |. ||+..+||+|-+.+|+||... +... +...+.|.-
T Consensus 32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~-il~rf~YrA~ 110 (185)
T COG1443 32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE-ILPRFRYRAA 110 (185)
T ss_pred HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc-cccceEEecc
Confidence 368889999999999999999765 477754 22 299999999999999999954 2222 223345543
Q ss_pred -CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 133 -PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 133 -p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+++.. .+.+...+.++... .+.+ .++|+.+++|++++++.+++.
T Consensus 111 ~~~~~~-----------E~Eic~V~~~~~~~---~~~~-----npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 111 DPDGIV-----------ENEICPVLAARLDS---ALDP-----NPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred CCCCcc-----------eeeeeeEEEEeecC---CCCC-----ChHHhhheeccCHHHHHHhhc
Confidence 22221 12222333334332 2232 346999999999999998876
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.89 E-value=2.7e-08 Score=81.17 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=73.2
Q ss_pred ceEEEEE-EecCC--cEEEEeecCCC-C--CeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchh
Q 028086 68 RNVGICL-INSSK--KIFAASRLDIP-D--SWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 68 ~~v~vvI-~~~~g--~vLL~rR~~~~-g--~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~ 136 (214)
.+|+++. +..+| .|+|+++.+.| | .-++|+| ||+++||+|||+||||+. .++....+.. |.
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~--f~----- 145 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTV--FL----- 145 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccE--Ec-----
Confidence 5566554 34556 58999988866 5 5578999 999999999999999998 4443332222 21
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
++++.+...+..++.+.+..++ .++. ...++.|+.++.=++..++.+.+.
T Consensus 146 --------DPGltn~~~~iv~v~idg~~pEnqrp~-q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041|consen 146 --------DPGLTNCNLCIVVVDIDGDVPENQRPV-QQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred --------CCCCCCCceEEEEEEecCCCccccCcc-ccCCCCceEEEEEeeHHHHHHHHH
Confidence 1234455556666777665332 1111 124567999999999999876654
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.81 E-value=4.5e-08 Score=72.77 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=35.5
Q ss_pred EEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086 71 GICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGV 115 (214)
Q Consensus 71 ~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl 115 (214)
.++++..+|++||.||... +|.|+||+| |+.+++..||+.||.++
T Consensus 6 ~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 6 AVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL 58 (118)
T ss_pred EEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence 3444455789999999765 489999998 56788999999999874
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.80 E-value=2e-08 Score=76.59 Aligned_cols=127 Identities=18% Similarity=0.346 Sum_probs=73.7
Q ss_pred cceEEEEEEec-CC--cEEEEeecC------CCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccc---
Q 028086 67 RRNVGICLINS-SK--KIFAASRLD------IPDSWQMPQN-----EDPKVAALRELKEETGVSSAE---VLAEVPY--- 126 (214)
Q Consensus 67 ~~~v~vvI~~~-~g--~vLL~rR~~------~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~--- 126 (214)
++.+++++.+. +| .|||++--. +.|.|++|+| |++..||.||..||+||.+.. .++....
T Consensus 3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~GG 82 (161)
T COG4119 3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSGG 82 (161)
T ss_pred cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCCC
Confidence 45567777643 34 566666322 1389999999 999999999999999997411 1111100
Q ss_pred --eEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHH
Q 028086 127 --WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKE 204 (214)
Q Consensus 127 --~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~ 204 (214)
...|....++ +-..-....|.+++....... ..-+|++...|+++.++...+...+|.++.+
T Consensus 83 KvVta~~veae~----------Dva~~rSntFe~eWPprSG~M------~~FPEVDRagWF~l~eAr~Kil~gQRpfldr 146 (161)
T COG4119 83 KVVTAFGVEAEL----------DVADARSNTFELEWPPRSGKM------RKFPEVDRAGWFPLAEARTKILKGQRPFLDR 146 (161)
T ss_pred cEEEEEeeeeee----------ehhhhhcceeeeecCCCCCcc------ccCcccccccceecHHHHhHHhhccchHHHH
Confidence 0000000000 000001122333333222122 2346899999999999998888888888887
Q ss_pred HHHhh
Q 028086 205 VFTVF 209 (214)
Q Consensus 205 ~l~~~ 209 (214)
+..+.
T Consensus 147 L~a~~ 151 (161)
T COG4119 147 LMAHA 151 (161)
T ss_pred HHHHh
Confidence 76653
No 90
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.67 E-value=1.5e-07 Score=78.86 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=64.6
Q ss_pred ceEEEEEEec-CC--cEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086 68 RNVGICLINS-SK--KIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF 132 (214)
Q Consensus 68 ~~v~vvI~~~-~g--~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~ 132 (214)
-+|.+.+++. +| +|||.+|+.. +|.-++||| ++-.++|.||..||.|++. +.+++..+..+.-.
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~- 122 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRS- 122 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeecc-
Confidence 3455555655 33 7999998765 588899999 7788999999999999994 45555544332210
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
+ +.-.....|+... .-.....+ ...|+..+.|+|++++..-.
T Consensus 123 --~------------~~v~p~v~~l~~~-~~l~~~~l-----n~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 123 --G------------WSVFPVVGFLSDK-KILPSLRL-----NSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred --C------------cccceeEEEEecc-cccccccC-----CchheeeeeeeeHHHHhhhh
Confidence 0 0000111111111 00122333 34699999999999987543
No 91
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=4e-06 Score=68.74 Aligned_cols=113 Identities=27% Similarity=0.444 Sum_probs=71.8
Q ss_pred ccceEEEEEEecCCcEEEEeecCC----CCCeec---------CCC------CCHHHHHHHHHHHHhCCCcceee-eecc
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI----PDSWQM---------PQN------EDPKVAALRELKEETGVSSAEVL-AEVP 125 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l---------PgG------Es~~eAA~REl~EETGl~~~~~l-~~~~ 125 (214)
-+++.+|+++|.+|++||++|+.. |+.|.- |++ .....||.|-|.-|+||....+- ..+.
T Consensus 51 LHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~ 130 (225)
T KOG0142|consen 51 LHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFN 130 (225)
T ss_pred hhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcc
Confidence 478899999999999999999875 466642 333 35789999999999999843321 1111
Q ss_pred --ceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 126 --YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 126 --~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
..+.|..+.+ ..|+ ....-|++-+.+ +..+++ +++|+.+++||+.+|+.+++.
T Consensus 131 ~ltrihYkA~sd------g~wG-----EhEiDYiL~~~~-~~~~nP-----npnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142|consen 131 FLTRIHYKAPSD------GIWG-----EHEIDYILFLVK-DVTLNP-----NPNEVSEIRYVSREELKELVA 185 (225)
T ss_pred cceeeeeecCCC------CCcc-----cceeeEEEEEec-cCCCCC-----ChhhhhHhheecHHHHHHHHh
Confidence 2223332322 2233 322223333332 222333 356999999999999988876
No 92
>PLN02839 nudix hydrolase
Probab=98.07 E-value=3.5e-05 Score=69.02 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=59.8
Q ss_pred CcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcc---eeeeeccceEEecCCchhhhhhccccC
Q 028086 79 KKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSA---EVLAEVPYWLTYDFPPEVREKLKHQWG 145 (214)
Q Consensus 79 g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~---~~l~~~~~~~~~~~p~~~~~~l~~~~~ 145 (214)
+++++.||+.. ||+|+. .+| |++.++++||.+||.||... .... .+.+.|.+....
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~--~G~VsY~~~~~~--------- 286 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA--VGAVSYMDIDQY--------- 286 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE--eEEEEEEEEcCC---------
Confidence 47999999765 588864 333 99999999999999999831 2221 123333321110
Q ss_pred CCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 146 GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 146 ~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.. +....|++.+.-. .++.+. .++.|+.++.+++++|+.+.+.
T Consensus 287 -g~--~~evly~YDLeLP-~df~P~---~qDGEVe~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 287 -CF--KRDVLFCYDLELP-QDFVPK---NQDGEVESFKLIPVAQVANVIR 329 (372)
T ss_pred -cc--ccCEEEEeeeecC-CccccC---CCccceeEEEEecHHHHHHHHH
Confidence 11 1223334433311 122222 2467999999999999987654
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.86 E-value=1.8e-05 Score=59.16 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=47.8
Q ss_pred EEEEecCCcEEEEeecCCC---CCeecCCC----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhcc
Q 028086 72 ICLINSSKKIFAASRLDIP---DSWQMPQN----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKH 142 (214)
Q Consensus 72 vvI~~~~g~vLL~rR~~~~---g~W~lPgG----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~ 142 (214)
+++++.+|++||.||.+.+ |.|+||.- ++..+++.+.+.+..|+.. .+.++. +.+.|
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----v~H~f---------- 67 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDDEEELEEWLEEQLGLSIRSVEPLGT----VKHVF---------- 67 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-CHHHHHHHTCCSSS-EEEE-S-SEE----EEEE-----------
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCCHHHHHHHHHHHcCCChhhheecCc----EEEEc----------
Confidence 5677899999999998763 99999987 2334455555556667652 122222 22221
Q ss_pred ccCCCccCc--eEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 143 QWGGDWKGQ--AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 143 ~~~~~~~~~--~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
+|. ..++|.+.+...... +..+..|++++++.++..|
T Consensus 68 ------SH~~~~~~~~~~~~~~~~~~-----------~~~~~~W~~~~~l~~~~~p 106 (114)
T PF14815_consen 68 ------SHRRWTIHVYEVEVSADPPA-----------EPEEGQWVSLEELDQYPLP 106 (114)
T ss_dssp ------SSEEEEEEEEEEEEE-SS---------------TTEEEEEGGGGGGS---
T ss_pred ------cceEEEEEEEEEEecCCCCC-----------CCCCcEEEEHHHHhhCCCC
Confidence 233 234455555432110 2457899999999876654
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.14 E-value=8.6e-05 Score=65.18 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=51.6
Q ss_pred CcccccccccccccccccCCCCCCccceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086 42 NLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV 115 (214)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl 115 (214)
+||++-.+.......+---.+++..-+..+++|+|.. .++||++.... ..|.+|.| |+-.++|+|||.||||.
T Consensus 57 ~c~~~~~~~~~~~e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgf 135 (348)
T KOG2937|consen 57 QCPLLWPWKNEKDEAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGF 135 (348)
T ss_pred CCccccchhhHHHHHHHhhccccCCCCCchHhhhhhhhhhhheeeceec-ccccccCccccccchhhhcchhcccchhhc
Confidence 4555544333322333323344444566688888866 47888886653 46999999 88999999999999999
Q ss_pred Cc
Q 028086 116 SS 117 (214)
Q Consensus 116 ~~ 117 (214)
+.
T Consensus 136 D~ 137 (348)
T KOG2937|consen 136 DY 137 (348)
T ss_pred CH
Confidence 84
No 95
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.15 E-value=0.12 Score=46.62 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=31.0
Q ss_pred EEEEEEecCCcEEEEeecCC---CCCeecCCCCCHHHHHHHHHHHHhCCC
Q 028086 70 VGICLINSSKKIFAASRLDI---PDSWQMPQNEDPKVAALRELKEETGVS 116 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgGEs~~eAA~REl~EETGl~ 116 (214)
..++++..+|++||.+|... .|.|+||+.++.. ..++..|+.|+.
T Consensus 233 ~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~~~~~--~~~~~~~~~~~~ 280 (350)
T PRK10880 233 GYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQFADEE--ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEECCEEEEEECCccChhhccccCCCCcchh--hHHHHHHhcCCc
Confidence 34455556789999999765 3899999764322 246666888875
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.02 E-value=0.051 Score=43.56 Aligned_cols=98 Identities=23% Similarity=0.364 Sum_probs=53.3
Q ss_pred EEEEEecCCcEEEEeecCCC------CCeec-CCC--------CCH----HHHHHHHHHHHhCCCc-----ceeeeeccc
Q 028086 71 GICLINSSKKIFAASRLDIP------DSWQM-PQN--------EDP----KVAALRELKEETGVSS-----AEVLAEVPY 126 (214)
Q Consensus 71 ~vvI~~~~g~vLL~rR~~~~------g~W~l-PgG--------Es~----~eAA~REl~EETGl~~-----~~~l~~~~~ 126 (214)
-++|.|++ +||+-.|.... +..++ .|| ++. .-.+.|||.||.|+.. ...++.+..
T Consensus 65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 45565655 89999986542 34443 234 333 3348899999999982 223332211
Q ss_pred eEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhh
Q 028086 127 WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILE 192 (214)
Q Consensus 127 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~ 192 (214)
+ .+. .+..+.=.++...+...++.. .+.+..+++|+..+++..
T Consensus 144 ----d-~ne-------------VgkVHiG~lf~~~~k~ndvev-----KEkd~~~~kwik~~ele~ 186 (203)
T COG4112 144 ----D-TNE-------------VGKVHIGALFLGRGKFNDVEV-----KEKDLFEWKWIKLEELEK 186 (203)
T ss_pred ----C-Ccc-------------cceEEEEEEEEeeccccceee-----eecceeeeeeeeHHHHHH
Confidence 1 111 233332233333332222332 234678899999999876
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.042 Score=46.13 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=29.3
Q ss_pred cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhC
Q 028086 80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETG 114 (214)
Q Consensus 80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETG 114 (214)
+++.++|.+ .+.|.+||| |-+-.+.+||+.||.=
T Consensus 140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 466777877 489999999 9999999999999973
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=94.85 E-value=0.12 Score=42.45 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=36.5
Q ss_pred CccceEEEEE-EecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086 65 GYRRNVGICL-INSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS 116 (214)
Q Consensus 65 ~~~~~v~vvI-~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~ 116 (214)
+.|+.|.+|+ +...+ .|||.+... ..|.+||| |+..+...|.|.+-.|..
T Consensus 41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 4577775554 45555 699998654 58999999 999999999999999986
No 99
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.44 Score=40.77 Aligned_cols=102 Identities=15% Similarity=0.261 Sum_probs=60.3
Q ss_pred EEEEeec-CCCCCeecCCC------CCHHHHHHHHHHHHhCCCc-ceeeeecc-ceEEecCCchhhhhhccccCCCc-cC
Q 028086 81 IFAASRL-DIPDSWQMPQN------EDPKVAALRELKEETGVSS-AEVLAEVP-YWLTYDFPPEVREKLKHQWGGDW-KG 150 (214)
Q Consensus 81 vLL~rR~-~~~g~W~lPgG------Es~~eAA~REl~EETGl~~-~~~l~~~~-~~~~~~~p~~~~~~l~~~~~~~~-~~ 150 (214)
+||++|. +..+.|.||.+ +++..+|.|+|++=.|=.. .-+++..+ .++.+.+|.+... .. .+
T Consensus 141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~--------e~~~~ 212 (263)
T KOG4548|consen 141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT--------EEPVS 212 (263)
T ss_pred EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc--------ccccc
Confidence 7777754 44589999999 8999999999999999763 23333321 2234445544311 00 12
Q ss_pred ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086 151 QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198 (214)
Q Consensus 151 ~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 198 (214)
....+|-+.+..+. .... .-..++.|++-+++.+.+.++.
T Consensus 213 sk~ff~k~~lv~~~-~~kn-------~n~edfvWvTkdel~e~l~~~~ 252 (263)
T KOG4548|consen 213 SKVFFFKASLVANS-NQKN-------QNKEDFVWVTKDELGEKLPKFA 252 (263)
T ss_pred ceeEEeeeeecccc-chhc-------ccccceEEechHHHhhhcchHH
Confidence 22333333333221 1111 1344699999999998887554
No 100
>PRK13910 DNA glycosylase MutY; Provisional
Probab=91.51 E-value=1.9 Score=37.90 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=18.9
Q ss_pred EEEEecCCcEEEEeecCC--CCCeecCCCC
Q 028086 72 ICLINSSKKIFAASRLDI--PDSWQMPQNE 99 (214)
Q Consensus 72 vvI~~~~g~vLL~rR~~~--~g~W~lPgGE 99 (214)
++++ .+|++||.+|... .|.|+||+.|
T Consensus 191 ~~~~-~~~~~ll~kr~~~l~~gl~~fP~~~ 219 (289)
T PRK13910 191 GVVI-QNNQIALEKIEQKLYLGMHHFPNLK 219 (289)
T ss_pred EEEE-ECCEEEEEECCCchhcccccCCCCh
Confidence 3444 4678999988532 4899999753
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=90.82 E-value=0.88 Score=39.01 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=57.3
Q ss_pred cEEEEeecCCC----CCee-c-CCC----CCHHHHHHHHHHHHhCCCc---ceeeeeccceEEecCCchhhhhhccccCC
Q 028086 80 KIFAASRLDIP----DSWQ-M-PQN----EDPKVAALRELKEETGVSS---AEVLAEVPYWLTYDFPPEVREKLKHQWGG 146 (214)
Q Consensus 80 ~vLL~rR~~~~----g~W~-l-PgG----Es~~eAA~REl~EETGl~~---~~~l~~~~~~~~~~~p~~~~~~l~~~~~~ 146 (214)
+|.+.||+... |.|+ + -|| -.+.++|+.|..||..+.. ..+++. +...|-+-.. +.
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~--G~VSy~~~es------r~--- 217 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSA--GCVSYYKFES------RQ--- 217 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceec--ceeEEEeeeh------hh---
Confidence 68888998764 5554 2 344 7899999999999999984 223322 2233321111 11
Q ss_pred CccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 147 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 147 ~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
......+++|-..+.. ++.+. ..+.|+..+.-+++.|..+.+
T Consensus 218 ~~~pe~qYVfDL~l~~---d~iP~---~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 218 GLFPETQYVFDLELPL---DFIPQ---NNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred ccCccceEEEeccCch---hhcCC---CCCCceeeEeeecHHHHHHHH
Confidence 1223344444443331 22222 234589999999999987554
No 102
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=88.46 E-value=1.4 Score=38.40 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.9
Q ss_pred EEEEEecCCcEEEEeecCC---CCCeecCCCCCHHHHHHHHHHHH
Q 028086 71 GICLINSSKKIFAASRLDI---PDSWQMPQNEDPKVAALRELKEE 112 (214)
Q Consensus 71 ~vvI~~~~g~vLL~rR~~~---~g~W~lPgGEs~~eAA~REl~EE 112 (214)
.++|.+.+|++|+.+|... .|.|+||+.|.. .+++|+.-+
T Consensus 231 ~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~~~~--~~~~~~~~~ 273 (275)
T TIGR01084 231 FLVLQNYDGEVLLEQRPEKGLWGGLYCFPQFEDE--DSLAFLLAQ 273 (275)
T ss_pred EEEEEeCCCeEEEEeCCCCchhhccccCCCCCch--hHHHHHHHh
Confidence 3444566789999999765 399999987554 335555443
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=85.01 E-value=12 Score=33.15 Aligned_cols=81 Identities=23% Similarity=0.154 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCCCc-ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcC
Q 028086 99 EDPKVAALRELKEETGVSS-AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177 (214)
Q Consensus 99 Es~~eAA~REl~EETGl~~-~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~ 177 (214)
-+..+-|.||..||+|.+. .+-+... ..| -+++ +-.|..+..|.++++..... .......+++
T Consensus 297 ~s~~e~a~~e~veecGYdlp~~~~k~v---a~y--~sGV----------G~SG~~QTmfy~eVTdA~rs-gpGgg~~ee~ 360 (405)
T KOG4432|consen 297 FSDPEKAARESVEECGYDLPEDSFKLV---AKY--ISGV----------GQSGDTQTMFYVEVTDARRS-GPGGGEKEED 360 (405)
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHhhh---hee--eccc----------CCcCCeeEEEEEEeehhhcc-CCCCCccccc
Confidence 4678899999999999983 1111111 011 1111 22456677777877632111 1111112455
Q ss_pred ceeeEEEeChhHHhhcCc
Q 028086 178 EFGEWKWMSPEQILERAV 195 (214)
Q Consensus 178 E~~~~~Wv~~~el~~~~~ 195 (214)
|..+..-++++++..+..
T Consensus 361 E~IEvv~lsle~a~~~~~ 378 (405)
T KOG4432|consen 361 EDIEVVRLSLEDAPSLYR 378 (405)
T ss_pred ceeeEEEechhhhhHHHh
Confidence 777888899999987654
No 104
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=84.36 E-value=3 Score=37.40 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=33.1
Q ss_pred cceEEEEEEecCCcEEEEeecCCC---CCeecCCCCCHHHHHHHHHHHHhCCC
Q 028086 67 RRNVGICLINSSKKIFAASRLDIP---DSWQMPQNEDPKVAALRELKEETGVS 116 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgGEs~~eAA~REl~EETGl~ 116 (214)
+..++.++.+.+|+++|.+|...+ |.|++|..|+.. -..+..-+.|+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~~~~~~~~~~~ 285 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DLLDWLAADGLA 285 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCceecccccccccccc--hhhhHhhhcccc
Confidence 566777888999999999998764 899999984322 233333344443
No 105
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=84.03 E-value=2.8 Score=33.99 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=38.0
Q ss_pred CCccceEE-EEEEecC--CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086 64 EGYRRNVG-ICLINSS--KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV 115 (214)
Q Consensus 64 ~~~~~~v~-vvI~~~~--g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl 115 (214)
.+.|+.|- ++|+.+. ..|||.+-.. ..+.+||| |+-.+...|-+-|-.|-
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 34577774 4555544 4788887643 57899999 99999999999999993
No 106
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=70.06 E-value=0.025 Score=37.68 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=23.8
Q ss_pred HhhhhccCCCCCCCCCCCCCCCCCCCcccc
Q 028086 17 LSSLLSRCKPNFTSPNYPHKLPKSTNLPLV 46 (214)
Q Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 46 (214)
+..||+++|+|++|.+.+|+.++|..+.-+
T Consensus 8 a~~lqaiAqtGL~Yskd~yD~ERy~~lr~i 37 (58)
T PF12535_consen 8 AKRLQAIAQTGLAYSKDPYDRERYEELREI 37 (58)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCChhhHHHHHHHHHH
Confidence 567999999999999999999999887665
No 107
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=64.25 E-value=9.8 Score=33.66 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.3
Q ss_pred cceEEEEEEecCC-cEEEEeecCC--------C---------CCe-----------ecCCC-----CCHHHHHHHHHHHH
Q 028086 67 RRNVGICLINSSK-KIFAASRLDI--------P---------DSW-----------QMPQN-----EDPKVAALRELKEE 112 (214)
Q Consensus 67 ~~~v~vvI~~~~g-~vLL~rR~~~--------~---------g~W-----------~lPgG-----Es~~eAA~REl~EE 112 (214)
.-+|.+++++.+- ++|++|+.+. + -.| ++=+| -++.+-|..|+.||
T Consensus 26 ~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee 105 (405)
T KOG4432|consen 26 MSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE 105 (405)
T ss_pred ccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence 3467888888764 6788775432 1 123 22244 68999999999999
Q ss_pred hCCCc
Q 028086 113 TGVSS 117 (214)
Q Consensus 113 TGl~~ 117 (214)
+|.+.
T Consensus 106 cgy~v 110 (405)
T KOG4432|consen 106 CGYRV 110 (405)
T ss_pred hCCcC
Confidence 99983
No 108
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=62.98 E-value=18 Score=31.99 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=34.8
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC--CCHHHHHHHHHHHHhCCCc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN--EDPKVAALRELKEETGVSS 117 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG--Es~~eAA~REl~EETGl~~ 117 (214)
...++|+++++.+|-.--....+.|..+-- -+-.+.++||++|+.|++.
T Consensus 14 ~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~ 64 (336)
T KOG1794|consen 14 CSRLVIVDEDGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDK 64 (336)
T ss_pred eeEEEEECCCCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCc
Confidence 345677888888865444333578887754 4456678899999999984
No 109
>PF14443 DBC1: DBC1
Probab=59.91 E-value=11 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred cEEEEeecCC----CCCeecC--CC------CCHHHHHHHHHHHHhCCC
Q 028086 80 KIFAASRLDI----PDSWQMP--QN------EDPKVAALRELKEETGVS 116 (214)
Q Consensus 80 ~vLL~rR~~~----~g~W~lP--gG------Es~~eAA~REl~EETGl~ 116 (214)
++|+.++.+. +|.|+.- || ..+..+|+|=++|=|||+
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiD 57 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGID 57 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccc
Confidence 3455444332 4788754 55 668999999999999998
No 110
>PRK07198 hypothetical protein; Validated
Probab=50.84 E-value=22 Score=32.65 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=29.9
Q ss_pred EecCCcEEEEeecCCCCCeecCCC----CCHHHHHHHHHHHHhCCC
Q 028086 75 INSSKKIFAASRLDIPDSWQMPQN----EDPKVAALRELKEETGVS 116 (214)
Q Consensus 75 ~~~~g~vLL~rR~~~~g~W~lPgG----Es~~eAA~REl~EETGl~ 116 (214)
++.+|.+.+.+-.-. -.|-+||= ---+.+.+|-|+|+||=-
T Consensus 158 ~~~~g~~~vtk~av~-pvwylpgva~rfg~~e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 158 LLANGDVVVTKAAIE-PVWYLPGVAERFGVSETDLRRTLFEQTGGM 202 (418)
T ss_pred ecCCCcEEEEEeeec-ccccccchHHHcCCCHHHHHHHHHHHcCCC
Confidence 456666666665543 58999997 445678899999999954
No 111
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.17 E-value=49 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=13.2
Q ss_pred CCeecCCC--CCHHHHHHHHHHH
Q 028086 91 DSWQMPQN--EDPKVAALRELKE 111 (214)
Q Consensus 91 g~W~lPgG--Es~~eAA~REl~E 111 (214)
..|-+||| -+---.|.|+.+|
T Consensus 22 ~GWl~Pgg~vi~NPlkAqR~AE~ 44 (60)
T PF07026_consen 22 NGWLMPGGKVITNPLKAQRLAEE 44 (60)
T ss_pred ceeecCCCeeEcCHHHHHHHHHH
Confidence 56999999 3333445665443
No 112
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=24.95 E-value=2.1e+02 Score=23.11 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=31.6
Q ss_pred CCCccceEEEEEEecCCcEEEEeecCCC-C------CeecCCC---CCHHHHHHHHHHHHhCC
Q 028086 63 PEGYRRNVGICLINSSKKIFAASRLDIP-D------SWQMPQN---EDPKVAALRELKEETGV 115 (214)
Q Consensus 63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~~-g------~W~lPgG---Es~~eAA~REl~EETGl 115 (214)
....|+.|+++|++ +++|+-+--++.| | .|..-+. .+...=..|.|.+|-.-
T Consensus 23 stc~r~~VGAvIvk-d~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA 84 (164)
T COG2131 23 STCPRRQVGAVIVK-DGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA 84 (164)
T ss_pred ccCcccceeEEEEe-CCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence 35668999999998 8899887655543 1 1111111 22223366888888653
No 113
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=23.73 E-value=78 Score=30.30 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=35.8
Q ss_pred EEEEEEecC-CcEEEEeecCCCCCeecCCC------C---CHHHHHHHHHHHHhCCCcceeee
Q 028086 70 VGICLINSS-KKIFAASRLDIPDSWQMPQN------E---DPKVAALRELKEETGVSSAEVLA 122 (214)
Q Consensus 70 v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG------E---s~~eAA~REl~EETGl~~~~~l~ 122 (214)
+.+.++|.. |++|-.-.... -.|...++ + +....|+|.+.||+|++..++.+
T Consensus 15 aRA~v~D~~~G~~la~a~~p~-~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~g 76 (544)
T COG1069 15 ARAGVFDCQTGTLLARAVRPY-PMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVG 76 (544)
T ss_pred eeEEEEEcCCCcchhhcccce-eccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeE
Confidence 467788877 77665443332 46777777 2 35667999999999999755544
No 114
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=23.24 E-value=91 Score=25.66 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=23.5
Q ss_pred EEEEEecCCcEEEEeecCCCCCeecCCC----CCHHHHHHHHHHH
Q 028086 71 GICLINSSKKIFAASRLDIPDSWQMPQN----EDPKVAALRELKE 111 (214)
Q Consensus 71 ~vvI~~~~g~vLL~rR~~~~g~W~lPgG----Es~~eAA~REl~E 111 (214)
+-++++++|.+.+.+-.-. -.|-+||= ---+...+|-|+|
T Consensus 150 Gki~~~~~g~~~VTK~AvE-PVWyLPGVA~RFGi~E~~LRR~LFE 193 (194)
T PF12471_consen 150 GKIVLNSNGDLAVTKAAVE-PVWYLPGVAERFGISEGELRRALFE 193 (194)
T ss_pred CeEEecCCCcEEEEEEEec-ccccchhhHHHcCCCHHHHHHHHhc
Confidence 3355566777777766553 58999995 1223344455555
No 115
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=23.07 E-value=89 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCeecCCCCCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCch
Q 028086 91 DSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 91 g~W~lPgGEs~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~ 135 (214)
..|.+-+ |+..--++||+.+|.|....+-+-.-..-+.|++|..
T Consensus 109 aRwGils-EdAFR~gv~eil~e~g~~v~rw~~yDkeG~VYg~PS~ 152 (231)
T COG5493 109 ARWGILS-EDAFRQGVREILREVGYVVERWLYYDKEGHVYGHPSD 152 (231)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhchheeeEEEEcCCcceecCCcc
Confidence 3563322 8888888999999999874332222223344555554
No 116
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=21.59 E-value=1.4e+02 Score=24.57 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=32.5
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC--------CCHHHHHHHHHHHHhCCCccee
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN--------EDPKVAALRELKEETGVSSAEV 120 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG--------Es~~eAA~REl~EETGl~~~~~ 120 (214)
++-++++|.+|+++-..+...+-.-.-+|. -.....+++++.++.+....++
T Consensus 11 s~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I 70 (245)
T PF00370_consen 11 SVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQI 70 (245)
T ss_dssp EEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGE
T ss_pred ceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCccccee
Confidence 456788999999888776543211111232 2344667889999997764333
Done!