Query 028086
Match_columns 214
No_of_seqs 256 out of 1477
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f3y_A Diadenosine 5',5'''-P1, 99.9 3.1E-26 1.1E-30 179.3 16.8 157 57-213 4-165 (165)
2 2kdv_A RNA pyrophosphohydrolas 99.9 5.4E-22 1.8E-26 157.3 14.5 144 64-213 5-155 (164)
3 3o8s_A Nudix hydrolase, ADP-ri 99.8 2.7E-21 9.4E-26 158.7 9.7 169 17-209 11-196 (206)
4 3u53_A BIS(5'-nucleosyl)-tetra 99.8 3.8E-20 1.3E-24 144.6 12.3 122 68-209 4-142 (155)
5 3i7u_A AP4A hydrolase; nudix p 99.8 1.9E-20 6.4E-25 143.9 10.1 117 68-209 5-129 (134)
6 3q1p_A Phosphohydrolase (MUTT/ 99.8 3E-22 1E-26 164.4 -0.5 169 17-208 9-194 (205)
7 1ktg_A Diadenosine tetraphosph 99.8 3E-19 1E-23 135.8 11.9 123 67-210 3-136 (138)
8 3grn_A MUTT related protein; s 99.8 5.8E-18 2E-22 131.4 12.7 119 64-208 5-136 (153)
9 3son_A Hypothetical nudix hydr 99.8 3.3E-18 1.1E-22 132.1 10.5 123 68-210 6-142 (149)
10 2o1c_A DATP pyrophosphohydrola 99.8 8.4E-18 2.9E-22 128.9 12.0 128 68-208 10-148 (150)
11 3gwy_A Putative CTP pyrophosph 99.8 8.8E-18 3E-22 128.6 12.1 116 67-210 6-134 (140)
12 2pbt_A AP4A hydrolase; nudix p 99.8 3.7E-18 1.3E-22 128.9 9.8 119 67-210 4-130 (134)
13 1vcd_A NDX1; nudix protein, di 99.8 1.5E-17 5E-22 124.5 12.8 114 68-209 3-124 (126)
14 3id9_A MUTT/nudix family prote 99.7 5.2E-18 1.8E-22 134.0 10.2 129 65-212 21-155 (171)
15 4dyw_A MUTT/nudix family prote 99.7 6.1E-18 2.1E-22 132.4 9.3 121 63-206 25-154 (157)
16 3eds_A MUTT/nudix family prote 99.7 4.8E-18 1.6E-22 132.3 8.4 114 65-198 19-140 (153)
17 3r03_A Nudix hydrolase; struct 99.7 3.8E-17 1.3E-21 124.9 12.8 121 66-211 7-138 (144)
18 3fcm_A Hydrolase, nudix family 99.7 1.8E-17 6E-22 134.6 11.4 132 65-210 43-185 (197)
19 3gg6_A Nudix motif 18, nucleos 99.7 8.9E-18 3.1E-22 130.6 9.0 118 66-208 19-146 (156)
20 2yyh_A MUTT domain, 8-OXO-DGTP 99.7 5E-17 1.7E-21 124.0 12.9 118 64-207 6-136 (139)
21 1rya_A GDP-mannose mannosyl hy 99.7 2.4E-17 8.1E-22 128.2 10.6 124 66-207 17-154 (160)
22 3oga_A Nucleoside triphosphata 99.7 4.6E-17 1.6E-21 127.8 12.2 123 65-204 25-161 (165)
23 1sjy_A MUTT/nudix family prote 99.7 6.6E-17 2.3E-21 125.6 12.8 109 65-195 11-132 (159)
24 2jvb_A Protein PSU1, mRNA-deca 99.7 2.1E-17 7.2E-22 127.0 9.9 107 68-196 5-117 (146)
25 3shd_A Phosphatase NUDJ; nudix 99.7 5.4E-17 1.8E-21 125.6 11.8 112 73-207 10-132 (153)
26 1hzt_A Isopentenyl diphosphate 99.7 2.7E-17 9.1E-22 132.6 10.3 110 64-194 29-151 (190)
27 3h95_A Nucleoside diphosphate- 99.7 4.9E-17 1.7E-21 132.3 11.9 121 65-206 24-155 (199)
28 3hhj_A Mutator MUTT protein; n 99.7 8.8E-17 3E-21 125.3 12.8 118 67-209 29-157 (158)
29 3f6a_A Hydrolase, nudix family 99.7 7.9E-17 2.7E-21 125.9 11.4 129 66-207 5-149 (159)
30 2azw_A MUTT/nudix family prote 99.7 4.4E-17 1.5E-21 124.9 9.7 121 66-208 17-146 (148)
31 3cng_A Nudix hydrolase; struct 99.7 1.4E-16 4.9E-21 128.6 12.9 117 66-209 39-164 (189)
32 3exq_A Nudix family hydrolase; 99.7 7.2E-17 2.5E-21 126.8 10.7 118 65-207 8-136 (161)
33 2fkb_A Putative nudix hydrolas 99.7 5E-16 1.7E-20 123.5 15.6 118 65-208 35-167 (180)
34 1k2e_A Nudix homolog; nudix/MU 99.7 6.7E-17 2.3E-21 126.2 9.3 114 68-209 2-136 (156)
35 2rrk_A ORF135, CTP pyrophospho 99.7 1.4E-16 4.8E-21 121.0 10.7 114 68-208 9-133 (140)
36 3ees_A Probable pyrophosphohyd 99.7 1.3E-16 4.3E-21 122.8 10.6 116 68-210 22-148 (153)
37 2b0v_A Nudix hydrolase; struct 99.7 2.2E-16 7.6E-21 121.8 10.9 100 73-194 13-121 (153)
38 1q27_A Putative nudix hydrolas 99.7 1.9E-16 6.7E-21 124.9 10.6 120 67-210 34-168 (171)
39 3q93_A 7,8-dihydro-8-oxoguanin 99.7 1.5E-16 5E-21 127.2 9.8 117 67-208 24-150 (176)
40 2w4e_A MUTT/nudix family prote 99.7 1.9E-16 6.3E-21 122.4 8.3 107 67-195 5-119 (145)
41 2qjt_B Nicotinamide-nucleotide 99.7 7.1E-16 2.4E-20 135.1 12.0 132 65-211 206-350 (352)
42 2pqv_A MUTT/nudix family prote 99.6 1.7E-16 6E-21 123.0 7.1 110 63-195 15-131 (154)
43 1nqz_A COA pyrophosphatase (MU 99.6 1E-15 3.5E-20 123.5 11.3 106 65-194 32-152 (194)
44 1mut_A MUTT, nucleoside tripho 99.6 7.2E-17 2.4E-21 120.8 4.2 109 70-205 7-126 (129)
45 2qjo_A Bifunctional NMN adenyl 99.6 4.8E-16 1.6E-20 135.3 10.0 127 66-208 202-340 (341)
46 2a6t_A SPAC19A8.12; alpha/beta 99.6 1.2E-16 4.2E-21 136.7 5.6 107 68-195 102-214 (271)
47 2fb1_A Conserved hypothetical 99.6 2.6E-16 8.9E-21 131.1 7.0 121 65-209 11-143 (226)
48 2yvp_A NDX2, MUTT/nudix family 99.6 2E-16 7E-21 126.3 5.8 106 67-195 41-156 (182)
49 3i9x_A MUTT/nudix family prote 99.6 3.4E-16 1.2E-20 125.9 7.1 123 68-211 28-174 (187)
50 2fvv_A Diphosphoinositol polyp 99.6 1E-15 3.6E-20 124.6 10.0 107 64-195 37-152 (194)
51 3fk9_A Mutator MUTT protein; s 99.6 6.6E-16 2.3E-20 124.8 8.7 118 68-208 5-130 (188)
52 3f13_A Putative nudix hydrolas 99.6 1.6E-15 5.5E-20 120.2 9.5 111 69-210 17-132 (163)
53 1v8y_A ADP-ribose pyrophosphat 99.6 2.1E-15 7E-20 119.3 10.1 105 67-195 34-146 (170)
54 1vk6_A NADH pyrophosphatase; 1 99.6 4.3E-15 1.5E-19 127.1 11.2 109 73-208 145-263 (269)
55 2b06_A MUTT/nudix family prote 99.6 6.3E-15 2.1E-19 114.1 10.6 115 66-207 7-134 (155)
56 3gz5_A MUTT/nudix family prote 99.6 2.9E-15 9.9E-20 125.9 8.3 121 67-210 22-157 (240)
57 1x51_A A/G-specific adenine DN 99.6 6.6E-15 2.2E-19 114.4 8.8 115 67-208 19-149 (155)
58 3e57_A Uncharacterized protein 99.6 1.5E-14 5.2E-19 119.6 10.7 122 62-209 62-207 (211)
59 1mk1_A ADPR pyrophosphatase; n 99.6 5.5E-15 1.9E-19 121.0 7.7 106 68-195 44-160 (207)
60 3o6z_A GDP-mannose pyrophospha 99.5 1.1E-14 3.7E-19 118.0 7.8 107 68-195 46-168 (191)
61 1g0s_A Hypothetical 23.7 kDa p 99.5 1.9E-14 6.5E-19 118.2 9.2 107 68-195 58-181 (209)
62 1vhz_A ADP compounds hydrolase 99.5 1.2E-14 4.2E-19 118.4 7.8 104 68-196 50-163 (198)
63 3fjy_A Probable MUTT1 protein; 99.5 3.8E-14 1.3E-18 125.3 10.5 126 78-209 37-175 (364)
64 2dho_A Isopentenyl-diphosphate 99.5 7.8E-14 2.7E-18 116.9 11.2 112 64-194 56-191 (235)
65 2dsc_A ADP-sugar pyrophosphata 99.5 9.8E-14 3.4E-18 113.9 11.2 111 68-195 62-185 (212)
66 2pny_A Isopentenyl-diphosphate 99.5 1.6E-13 5.4E-18 115.9 12.1 112 64-194 67-202 (246)
67 3q91_A Uridine diphosphate glu 99.5 6.5E-14 2.2E-18 116.3 8.0 112 67-195 36-190 (218)
68 3fsp_A A/G-specific adenine gl 99.5 2.2E-13 7.7E-18 121.0 10.0 113 67-209 240-362 (369)
69 2fml_A MUTT/nudix family prote 99.4 5.3E-13 1.8E-17 114.0 11.9 108 64-193 36-157 (273)
70 1u20_A U8 snoRNA-binding prote 99.4 1.2E-13 4.1E-18 113.7 4.8 104 73-193 50-165 (212)
71 3dup_A MUTT/nudix family prote 99.4 2.2E-12 7.5E-17 111.8 10.1 115 64-195 115-244 (300)
72 1q33_A Pyrophosphatase, ADP-ri 99.3 7.9E-12 2.7E-16 107.9 11.1 117 80-212 140-280 (292)
73 3qsj_A Nudix hydrolase; struct 99.2 3.7E-11 1.3E-15 100.6 10.9 52 65-116 6-90 (232)
74 3rh7_A Hypothetical oxidoreduc 99.2 8.6E-11 2.9E-15 102.7 9.6 103 67-208 183-293 (321)
75 2xsq_A U8 snoRNA-decapping enz 99.1 6E-11 2E-15 98.2 4.9 96 80-191 66-171 (217)
76 3bho_A Cleavage and polyadenyl 98.6 8.7E-08 3E-12 78.3 7.0 50 65-116 56-113 (208)
77 3kvh_A Protein syndesmos; NUDT 98.5 8.1E-08 2.8E-12 77.9 3.4 106 64-191 18-147 (214)
78 3ezw_A Glycerol kinase; glycer 24.2 1.7E+02 0.0057 26.1 6.8 51 69-120 15-74 (526)
No 1
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.94 E-value=3.1e-26 Score=179.26 Aligned_cols=157 Identities=78% Similarity=1.417 Sum_probs=123.3
Q ss_pred cccCCCCCCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEec
Q 028086 57 YSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYD 131 (214)
Q Consensus 57 ~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~ 131 (214)
.+|..++..+|++|+++|++.+|+|||++|...+|.|.+||| ||+++||+||++||||++...+......+..|.
T Consensus 4 ~~~~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 83 (165)
T 1f3y_A 4 GSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYD 83 (165)
T ss_dssp CCCSSCCSSCCCEEEEEEECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCC
T ss_pred ccccCCccceeeeEEEEEECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeee
Confidence 356677888999999999999999999999866699999999 999999999999999998655544433445566
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcc
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 211 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~ 211 (214)
++......+...+++.+.++..++|++.+.+...++.++++..+++|+.+++|++++++.+++.++++.+++++++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~ 163 (165)
T 1f3y_A 84 FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAP 163 (165)
T ss_dssp CCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGG
T ss_pred cCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 66654333444555566677788999998765444444322234669999999999999999999999999999999998
Q ss_pred cc
Q 028086 212 HL 213 (214)
Q Consensus 212 ~~ 213 (214)
+|
T Consensus 164 ~~ 165 (165)
T 1f3y_A 164 HL 165 (165)
T ss_dssp GC
T ss_pred cC
Confidence 76
No 2
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.88 E-value=5.4e-22 Score=157.29 Aligned_cols=144 Identities=38% Similarity=0.694 Sum_probs=110.8
Q ss_pred CCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~ 136 (214)
..+|++|+++|++.+|+|||++|.+ ++.|.+||| ||+.+||+||++||||+.. ..+++....++.|.+|+..
T Consensus 5 ~~~~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
T 2kdv_A 5 DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRL 83 (164)
T ss_dssp SSEEEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTT
T ss_pred CCCCcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcce
Confidence 4688999999999899999999986 689999999 9999999999999999984 4556666666667776543
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcccc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~~ 213 (214)
.. ....+.+.++..++|++.+.++...+.++. .+.+|+.+++|++++++.+.+.++++.+|++++..+.+.|
T Consensus 84 ~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l 155 (164)
T 2kdv_A 84 VR---WDTKPVCIGQKQKWFLLQLVSGDAEINMQT--SSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV 155 (164)
T ss_dssp CC---TTSSSCCCEEEEEEEEEEESSCGGGCCSCS--SSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ee---eccCcccccceeEEEEEEecCCccccccCC--CCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 10 111223345677899998876544444431 1345899999999999998888888999999999887754
No 3
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.85 E-value=2.7e-21 Score=158.75 Aligned_cols=169 Identities=11% Similarity=0.134 Sum_probs=82.3
Q ss_pred HhhhhccCCCCCCCCCCCCCCCCCCCcccccccccc---------cccccccCCCCCCccceEEEEEEecCCcEEEEeec
Q 028086 17 LSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQI---------CSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL 87 (214)
Q Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~ 87 (214)
...||+++|+|++|.+.+|++++|..+.-++..-.. ....++........+..|+++|++ +|+|||++|.
T Consensus 11 ~~~l~~~a~~gl~~~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~v~~vv~~-~~~vLLvrr~ 89 (206)
T 3o8s_A 11 AVRLQALAQTGLAYGKDVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQ-EDKILLVQEN 89 (206)
T ss_dssp ---------------------------------------------------------CCEEEEEEEEEE-TTEEEEEECT
T ss_pred HHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHhccCCCHHHHHHHhccccCCCCCCccEEEEEEE-CCEEEEEEec
Confidence 357999999999999999999999887776542111 112233333344456778888887 4899999998
Q ss_pred CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEE
Q 028086 88 DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF 160 (214)
Q Consensus 88 ~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~ 160 (214)
+|.|.+||| ||+.+||+||++||||++. ..+++.... ..+.++.. ..+...++|.+..
T Consensus 90 --~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~ 154 (206)
T 3o8s_A 90 --DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDK-HKNNPAKS------------AHRVTKVFILCRL 154 (206)
T ss_dssp --TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEH-HHHCC-----------------CEEEEEEEEEE
T ss_pred --CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEec-cccCCCCC------------CceEEEEEEEEEe
Confidence 589999999 9999999999999999984 233332210 00111111 1133456666666
Q ss_pred eCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 161 TGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 161 ~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.++ .+.. ..|+.+++|++++++.++.. +..+.+++.+++..
T Consensus 155 ~~~--~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~ 196 (206)
T 3o8s_A 155 LGG--EFQP------NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEAS 196 (206)
T ss_dssp EEE--CCCC------CSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHH
T ss_pred cCC--eecC------CCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHH
Confidence 533 2222 25889999999999998876 56677777776643
No 4
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.83 E-value=3.8e-20 Score=144.61 Aligned_cols=122 Identities=23% Similarity=0.363 Sum_probs=82.8
Q ss_pred ceEEEEEE---------ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086 68 RNVGICLI---------NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD 131 (214)
Q Consensus 68 ~~v~vvI~---------~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~ 131 (214)
+++|++|+ |+++++||++|++.++.|.+||| ||+.+||+||++||||+.. ...+........+.
T Consensus 4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 3u53_A 4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYV 83 (155)
T ss_dssp CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred eEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecC
Confidence 46777877 44568999999887799999999 9999999999999999984 23333222222221
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.. .......+|++........+.. .+|+.+++|++++|+.+++. +..+.+++++.+.+
T Consensus 84 --~~------------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L 142 (155)
T 3u53_A 84 --AR------------NKPKTVIYWLAEVKDYDVEIRL------SHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFL 142 (155)
T ss_dssp --ET------------TEEEEEEEEEEEESCTTCCCCC------CTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred --CC------------cceeEEEEEEEEEeccCCccCC------CcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1123445666666544333333 35899999999999988765 55566776665443
No 5
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.83 E-value=1.9e-20 Score=143.88 Aligned_cols=117 Identities=21% Similarity=0.404 Sum_probs=81.6
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
.+++++|++ +|+|||++|.+ |.|.+||| ||+.+||+||++||||++. ...++..... +....
T Consensus 5 ~aag~vv~~-~~~vLL~~r~~--g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~--~~~~~------ 73 (134)
T 3i7u_A 5 FSAGGVLFK-DGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYW--YTLKG------ 73 (134)
T ss_dssp EEEEEEEEE-TTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEE--EEETT------
T ss_pred EEEEEEEEE-CCEEEEEEeCC--CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEE--ecCCC------
Confidence 456666665 68999999864 89999999 9999999999999999983 3334332211 11111
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.......++|++...++ ++.++ +|+.+++|++++++.+++. +..+.+++++++..
T Consensus 74 ------~~~~~~~~~f~~~~~~~--~~~~~------~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~ 129 (134)
T 3i7u_A 74 ------ERIFKTVKYYLMKYKEG--EPRPS------WEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLK 129 (134)
T ss_dssp ------EEEEEEEEEEEEEEEEE--CCCCC------TTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHH
T ss_pred ------ceEEEEEEEEEEEEcCC--cCcCC------hhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHH
Confidence 11233456778776543 23332 4899999999999998876 66678888777643
No 6
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.83 E-value=3e-22 Score=164.37 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=114.8
Q ss_pred HhhhhccCCCCCCCCCCCCCCCCCCCccccccc-----ccc----cccccccCCCCCCccceEEEEEEecCCcEEEEeec
Q 028086 17 LSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQ-----NQI----CSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL 87 (214)
Q Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~ 87 (214)
...||+++|+|++|.+.+|+.++|+.+..++.. ... ....++........+.+|+++|++ +|+|||++|.
T Consensus 9 ~~~~~~~a~~g~~y~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~vv~~-~~~vLLv~r~ 87 (205)
T 3q1p_A 9 VKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFASETGYQTPKVDIRAVVFQ-NEKLLFVKEK 87 (205)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCSSCCCEEEEEEEEEE-TTEEEEEEC-
T ss_pred HHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccccCCCCCcceEEEEEEE-CCEEEEEEEc
Confidence 457999999999999999999999877766431 111 112233344455567788888887 7899999987
Q ss_pred CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEE
Q 028086 88 DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF 160 (214)
Q Consensus 88 ~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~ 160 (214)
. +|.|.+||| ||+.+||+||++||||++. ..+++.... ..+.++.. ..+...++|++..
T Consensus 88 ~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~ 153 (205)
T 3q1p_A 88 S-DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK-EKHQPSPS------------ATHVYKIFIGCEI 153 (205)
T ss_dssp ---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH-HHHSCCCC------------SSCEEEEEEEEEE
T ss_pred C-CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec-cccCCCCC------------CceEEEEEEEEEe
Confidence 5 589999999 9999999999999999984 233322110 00111111 1233456677776
Q ss_pred eCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 161 TGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 161 ~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
.++ .+.. ..|+.+++|++++++.++.. +..+..++.+++.
T Consensus 154 ~~~--~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~ 194 (205)
T 3q1p_A 154 IGG--EKKT------SIETEEVEFFGENELPNLSIARNTEDQIKEMFAY 194 (205)
T ss_dssp EEE--CCCC------CTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred cCC--ccCC------CCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHH
Confidence 543 2222 25899999999999998876 6667777777664
No 7
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.80 E-value=3e-19 Score=135.83 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=86.0
Q ss_pred cceEEEEEEec---CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINS---SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~---~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~ 136 (214)
+.+|+++|++. +++|||++|...+|.|.+||| |++.+||+||++||||+.. ..+++.....+.|.++.
T Consensus 3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~-- 80 (138)
T 1ktg_A 3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG-- 80 (138)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT--
T ss_pred eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCC--
Confidence 56788888876 468999999765679999999 9999999999999999973 33332222223333221
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
.+...++|++...+.. . . .+++|+.+++|++++++.++.. +..+.+++++.+.+.
T Consensus 81 ------------~~~~~~~f~~~~~~~~-~-~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 136 (138)
T 1ktg_A 81 ------------KPKSVKYWLAKLNNPD-D-V-----QLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA 136 (138)
T ss_dssp ------------EEEEEEEEEEEECSCC-C-C-----CCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ------------CceEEEEEEEEecCCc-c-c-----CCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHhh
Confidence 1335567777775421 1 1 1345899999999999998765 455678887777654
No 8
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.76 E-value=5.8e-18 Score=131.42 Aligned_cols=119 Identities=21% Similarity=0.345 Sum_probs=83.2
Q ss_pred CCccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF 132 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~ 132 (214)
..++.+|+++|++.+|+|||++|... +|.|.+||| |++.+||+||++||||+.. ..+++.. .+.+
T Consensus 5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~----~~~~ 80 (153)
T 3grn_A 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQV----NFEL 80 (153)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEE----EEEC
T ss_pred CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEE----EEec
Confidence 34577888899998999999999864 489999999 9999999999999999984 2333321 2222
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC-c-cCCHHHHHHHHHh
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA-V-DFKKPVYKEVFTV 208 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~-~-~~~~~~~~~~l~~ 208 (214)
+. .....++|.+....+ ++.+ .+|+.+++|++++++.++. . +..+.+++.+.+.
T Consensus 81 ~~--------------~~~~~~~~~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~ 136 (153)
T 3grn_A 81 TE--------------KKVIAIVFDGGYVVA--DVKL------SYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRE 136 (153)
T ss_dssp SS--------------CEEEEEEEEEEECCC--CCCC------CTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred CC--------------ceEEEEEEEEEecCC--cEec------CCCcceEEEEEHHHhhhcccchHHHHHHHHHHhcc
Confidence 21 122344555554432 2222 2488999999999999886 4 5566677666543
No 9
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.76 E-value=3.3e-18 Score=132.09 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=82.1
Q ss_pred ceEEEEEE---ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCccee---eeeccce--EEecCCc
Q 028086 68 RNVGICLI---NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEV---LAEVPYW--LTYDFPP 134 (214)
Q Consensus 68 ~~v~vvI~---~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~---l~~~~~~--~~~~~p~ 134 (214)
.+|.++++ +++++|||++|.+ +|.|.+||| |++.+||+||++||||++.... +...... +.|.++.
T Consensus 6 ~~v~vvi~~~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (149)
T 3son_A 6 FQVLVIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNK 84 (149)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSS
T ss_pred eEEEEEEEEecCCCeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCC
Confidence 35556665 5667999999987 499999999 9999999999999999984221 1111000 0111111
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
. .....++|++.......++.+ ++|+.+++|++++++.++.. +..+.+++.+.+.+.
T Consensus 85 ~-------------~~~~~~~f~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 142 (149)
T 3son_A 85 P-------------YVVPEYCFAIDLTSCSYQVTL------SLEHSELRWVSYESAIQLLEWDSNKTALYELNERLK 142 (149)
T ss_dssp C-------------SEEEEEEEEEECTTTGGGCCC------CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred c-------------eEeEEEEEEEEcCCCCCcccC------CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1 123456677766532223333 24899999999999998876 667778888776654
No 10
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.75 E-value=8.4e-18 Score=128.91 Aligned_cols=128 Identities=18% Similarity=0.331 Sum_probs=82.2
Q ss_pred ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc----eeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA----EVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~----~~l~~~~~~~~~~~p~~~~ 137 (214)
.+|+++|++.+ |+|||++|...+|.|.+||| |++.+||+||++||||++.. .+++.. ....|.+-...
T Consensus 10 ~~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~~~~~~~~~~- 87 (150)
T 2o1c_A 10 VSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQ-RTVEFEIFSHL- 87 (150)
T ss_dssp EEEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEE-EEEEEECCGGG-
T ss_pred eEEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeee-ceeeeeeeccc-
Confidence 46788888875 89999999876799999999 99999999999999999842 233321 11122111100
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
.....+.......++|.+....+. .+. .+|+.+++|++++++.++.. +..+.+++++++.
T Consensus 88 ---~~~~~~~~~~~~~~~f~~~~~~~~-~~~-------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 148 (150)
T 2o1c_A 88 ---RHRYAPGVTRNTESWFCLALPHER-QIV-------FTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN 148 (150)
T ss_dssp ---GGGBCTTCCEEEEEEEEEEESSCC-CCC-------CSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred ---ccccCCCCcceEEEEEEEEcCCCC-CcC-------hhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence 001111112345567777765321 111 24888999999999998765 4456666666544
No 11
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.75 E-value=8.8e-18 Score=128.57 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=78.3
Q ss_pred cceEEEEEEecCCcEEEEeecC-----CCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086 67 RRNVGICLINSSKKIFAASRLD-----IPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP 134 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~-----~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~ 134 (214)
...|+++|.+ +|+|||++|.+ .+|.|.+||| |++.+||+||++||||+.. ...++. +.+.++.
T Consensus 6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~----~~~~~~~ 80 (140)
T 3gwy_A 6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLT----VHHTYPD 80 (140)
T ss_dssp EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE----EECCCSS
T ss_pred EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEE----EEEEeCC
Confidence 4455666666 89999999875 3478999999 9999999999999999984 222322 2222221
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
.....++|.+....+ .+. ..|+.+++|++++++.++.. +..+.+++.+.+.-.
T Consensus 81 --------------~~~~~~~f~~~~~~~--~~~-------~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~~~ 134 (140)
T 3gwy_A 81 --------------FEITMHAFLCHPVGQ--RYV-------LKEHIAAQWLSTREMAILDWAEADKPIVRKISEQEG 134 (140)
T ss_dssp --------------CCEEEEEEEEEECCS--CCC-------CCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC---
T ss_pred --------------ceEEEEEEEEEecCC--ccc-------ccccceeEeccHHHHhhCCCCcccHHHHHHHHhCcC
Confidence 133456677766543 222 24888999999999998876 677888888765543
No 12
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.75 E-value=3.7e-18 Score=128.90 Aligned_cols=119 Identities=20% Similarity=0.361 Sum_probs=82.0
Q ss_pred cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
..+|+++|++ +|+|||++|.+ |.|.+||| ||+.+||+||++||||++. ...++.. .+.++..
T Consensus 4 ~~~~~~vi~~-~~~vLl~~r~~--~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~~~~---- 72 (134)
T 2pbt_A 4 EFSAGGVLFK-DGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEI----HYWYTLK---- 72 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE----EEEEEET----
T ss_pred ceEEEEEEEE-CCEEEEEEeCC--CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEE----EEEeeCC----
Confidence 3567777777 67999999976 89999999 9999999999999999984 2333332 1222111
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
+.......++|++...++ .+.. .+|+.+++|++++++.++.. +..+.+++.+++.+.
T Consensus 73 ------~~~~~~~~~~~~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 130 (134)
T 2pbt_A 73 ------GERIFKTVKYYLMKYKEG--EPRP------SWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKE 130 (134)
T ss_dssp ------TEEEEEEEEEEEEEEEEE--CCCC------CTTSSEEEEEEHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ------CcEEEEEEEEEEEEecCC--CcCC------CcceeEEEEEcHHHHHhhhcchhHHHHHHHHHHHhh
Confidence 001133456666665532 2222 12889999999999998766 566778888777654
No 13
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.75 E-value=1.5e-17 Score=124.48 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=81.2
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l 140 (214)
.+|+++|++.+|+|||++|.+ |.|.+||| |++.+||+||++||||+... ..++. +.+.++ +
T Consensus 3 ~~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~-~----- 70 (126)
T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP----TRYVNP-K----- 70 (126)
T ss_dssp EEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE----EEEECT-T-----
T ss_pred eEEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeE----EEEecC-C-----
Confidence 467888899889999999976 89999999 99999999999999999842 22222 222221 1
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.....++|.+....+. .. ...|+.+++|++++++.++.. +..+.+++++++.+
T Consensus 71 --------~~~~~~~~~~~~~~~~--~~------~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~l 124 (126)
T 1vcd_A 71 --------GVEREVHWFLMRGEGA--PR------LEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL 124 (126)
T ss_dssp --------SCEEEEEEEEEEEESC--CC------CCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred --------ceEEEEEEEEEEcCCC--CC------CCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHhc
Confidence 1234566666654332 11 235888999999999998765 55567777776653
No 14
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.75 E-value=5.2e-18 Score=134.04 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=81.6
Q ss_pred CccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhh
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~ 139 (214)
.++..|+++|++ +|+|||++|...+|.|.+||| |++.+||+||++||||++. ...... .. +.++..
T Consensus 21 ~~~~~v~~ii~~-~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~-~~~~~~-~~--~~~~~~---- 91 (171)
T 3id9_A 21 IMQVRVTGILIE-DEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEV-KIKKLL-YV--CDKPDA---- 91 (171)
T ss_dssp -CEEEEEEEEEE-TTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCE-EEEEEE-EE--EEETTS----
T ss_pred ceEEEEEEEEEE-CCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCcc-ccceEE-EE--EcccCC----
Confidence 356777777776 689999999876799999999 9999999999999999984 211111 11 111111
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhccc
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFTPH 212 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~~~ 212 (214)
.......+|.+....+. +.......+.+|+.+++|++++++.++.. +..+.++++.+....++
T Consensus 92 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~~~~~ 155 (171)
T 3id9_A 92 --------SPSLLHITFLLERIEGE--ITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISGGLANAGSY 155 (171)
T ss_dssp --------SSCEEEEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTCSHHHHHGGGGTTCB
T ss_pred --------CCcEEEEEEEEEEcCCc--ccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHhhccccce
Confidence 01223445666554332 22211112346889999999999998866 66677787776655544
No 15
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.74 E-value=6.1e-18 Score=132.43 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=81.5
Q ss_pred CCCccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCC
Q 028086 63 PEGYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFP 133 (214)
Q Consensus 63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p 133 (214)
+...+.+|+++|++ +|+|||++|.+. +|.|.+||| ||+.+||+||++||||++. .++++.. .+.++
T Consensus 25 ~~~~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~ 99 (157)
T 4dyw_A 25 TEQPRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVV----DHIDA 99 (157)
T ss_dssp -CCCEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEE----EEEET
T ss_pred CCCceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEE----Eeecc
Confidence 34457788888887 789999999864 489999999 9999999999999999983 3333322 11111
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHH
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVF 206 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l 206 (214)
... .....++|.+....+ .+.. .+++|+.+++|++++++.+.+.+..+.+++.+.
T Consensus 100 ~~~------------~~~~~~~f~~~~~~~--~~~~----~~~~E~~~~~W~~~~el~~~l~~~~~~~l~~l~ 154 (157)
T 4dyw_A 100 ANG------------EHWVAPVYLAHAFSG--EPRV----VEPDRHEALGWFALDDLPQPLTHATRIALEQVT 154 (157)
T ss_dssp TTT------------EEEEEEEEEESEEES--CCCC----SCTTTEEEEEEEETTSCCSSBCHHHHHHHHHHC
T ss_pred CCC------------cEEEEEEEEEEEcCC--Cccc----CCCCcEeEEEEECHHHcccccCHHHHHHHHHHH
Confidence 110 122344555554322 2221 134689999999999999866676677776653
No 16
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.74 E-value=4.8e-18 Score=132.35 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred CccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeecc-ceEEecCCchh
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVP-YWLTYDFPPEV 136 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~-~~~~~~~p~~~ 136 (214)
..+++|+++|++.+|+|||++|. +|.|.+||| |++.+||+||++||||++. ..+++... ....+.++.+.
T Consensus 19 ~~~~~v~~ii~~~~~~vLL~~r~--~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 96 (153)
T 3eds_A 19 IFXPSVAAVIKNEQGEILFQYPG--GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNGD 96 (153)
T ss_dssp EEEEEEEEEEBCTTCCEEEECC-----CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTSC
T ss_pred EEeeeEEEEEEcCCCeEEEEEcC--CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecCCCC
Confidence 45678888888889999999988 689999999 9999999999999999984 23333221 01123333221
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 198 (214)
......++|.+....+ ++.. +.+|+.+++|++++++.++..++.
T Consensus 97 -----------~~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~W~~~~el~~l~~~~p 140 (153)
T 3eds_A 97 -----------EVEYIVVVFECEVTSG--ELRS-----IDGESLKLQYFSLSEKPPLALPYP 140 (153)
T ss_dssp -----------EEEEEEEEEEEEEEEE--CCC------------CEEEECGGGCCCBSSCCC
T ss_pred -----------eEEEEEEEEEEEecCC--cccc-----CCCcEEEEEEECHHHCchhcccCc
Confidence 0122345566665432 2222 235888999999999998887654
No 17
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.73 E-value=3.8e-17 Score=124.91 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=81.4
Q ss_pred ccceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCch
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPE 135 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~ 135 (214)
.+..++++|++.+|+|||++|.+. +|.|.+||| |++.+||+||++||||+.... +... ..+.+.++.
T Consensus 7 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~- 83 (144)
T 3r03_A 7 ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPL--AFASHSYDT- 83 (144)
T ss_dssp EEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECSS-
T ss_pred eeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEE--EeeeccCCC-
Confidence 355667777888899999999754 389999999 999999999999999998422 1221 112222211
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhcc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFTP 211 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~~ 211 (214)
.....++|.+....+ .+. ..|+.+++|++++++.++.. +..+.+++.+.+...|
T Consensus 84 -------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~ 138 (144)
T 3r03_A 84 -------------FHLLMPLYACRSWRG--RAT-------AREGQTLAWVRAERLREYPMPPADLPLIPILQDWLEG 138 (144)
T ss_dssp -------------SEEEEEEEEECCCBS--CCC-------CCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC--
T ss_pred -------------eEEEEEEEEEEecCC--ccC-------CCCcceEEEEeHHHhccCCCCcchHHHHHHHhCcccc
Confidence 122334455443322 222 24788999999999999877 5667788887766544
No 18
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.73 E-value=1.8e-17 Score=134.62 Aligned_cols=132 Identities=19% Similarity=0.297 Sum_probs=81.9
Q ss_pred CccceEEEEEEecCC-cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEe-cCCchhh
Q 028086 65 GYRRNVGICLINSSK-KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTY-DFPPEVR 137 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g-~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~-~~p~~~~ 137 (214)
.++.+++++|++.+| +|||++|.. +|.|.+||| ||+.+||+||++||||++...++......+.+ ..+...
T Consensus 43 ~~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~- 120 (197)
T 3fcm_A 43 IAHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHI- 120 (197)
T ss_dssp SEEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEE-
T ss_pred CccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCcc-
Confidence 456788888888776 999999875 589999999 99999999999999999843332211111111 111110
Q ss_pred hhhccccCCCccC---ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 138 EKLKHQWGGDWKG---QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 138 ~~l~~~~~~~~~~---~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
..+.+.. ....+|++....+ ..+.+ +++|+.+++|++++++.++.. +..+.+++++++.+.
T Consensus 121 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~ 185 (197)
T 3fcm_A 121 ------KRGKYVSSHLHLNLTYLIECSED-ETLML-----KEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLK 185 (197)
T ss_dssp ------ETTEEECCEEEEEEEEEEECCTT-SCCCC-----CC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHH
T ss_pred ------ccCcccCCceeEEEEEEEEeCCC-cccCC-----CcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 0000001 1123445544322 12222 346899999999999999877 666778888887664
No 19
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=130.61 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=80.4
Q ss_pred ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~ 136 (214)
....|+++|++.+|+|||++|.+. +|.|.+||| ||+.+||+||++||||++. .++++. +...
T Consensus 19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~------~~~~--- 89 (156)
T 3gg6_A 19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSV------EERG--- 89 (156)
T ss_dssp CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE------EESS---
T ss_pred eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEE------EcCC---
Confidence 345677778888999999999864 489999999 9999999999999999984 222221 1111
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHHHHHHh
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKEVFTV 208 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~l~~ 208 (214)
.+...++|++....+...... .+++|+.+++|++++++.+++.+. .+.++..+...
T Consensus 90 ------------~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 146 (156)
T 3gg6_A 90 ------------PSWVRFVFLARPTGGILKTSK----EADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQY 146 (156)
T ss_dssp ------------TTEEEEEEEEEEEEECCCCGG----GCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHH
T ss_pred ------------CCEEEEEEEEEeeCCeeccCC----CCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHH
Confidence 123456677766533222111 134688999999999998877643 34555555443
No 20
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.73 E-value=5e-17 Score=124.05 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCccceEEEEEEe--cCCc--EEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086 64 EGYRRNVGICLIN--SSKK--IFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF 132 (214)
Q Consensus 64 ~~~~~~v~vvI~~--~~g~--vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~ 132 (214)
...+.+|+++|++ ++|+ |||++|.+.++.|.+||| ||+.+||+||++||||+... .+++ .+.+
T Consensus 6 ~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~------~~~~ 79 (139)
T 2yyh_A 6 KTPLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMG------VYSD 79 (139)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEE------EECC
T ss_pred cCCeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEE------EECC
Confidence 4457788888876 6788 999999876667999999 99999999999999999842 2222 1222
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh--hcCccCCHHHHHHHHH
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL--ERAVDFKKPVYKEVFT 207 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~--~~~~~~~~~~~~~~l~ 207 (214)
+... ...+...++|++...+ ++. ..+|+.+++|++++++. .+..+ .+++++.+++
T Consensus 80 ~~~~----------~~~~~~~~~f~~~~~~---~~~------~~~e~~~~~W~~~~el~~~~l~~~-~~~~l~~~l~ 136 (139)
T 2yyh_A 80 PERD----------PRAHVVSVVWIGDAQG---EPK------AGSDAKKVKVYRLEEIPLDKLVFD-HKKIILDFLK 136 (139)
T ss_dssp TTSC----------TTSCEEEEEEEEEEES---CCC------CCTTEEEEEEECTTSCCGGGBCTT-HHHHHHHHHH
T ss_pred CCcC----------CCceEEEEEEEEecCC---ccC------CCCCcceEEEEEHHHCCHhhcCCC-HHHHHHHHHh
Confidence 2110 0113345667777632 222 23588999999999998 55545 4556666654
No 21
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.72 E-value=2.4e-17 Score=128.21 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=80.5
Q ss_pred ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc----ceeeeeccceEEecCCc
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS----AEVLAEVPYWLTYDFPP 134 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~----~~~l~~~~~~~~~~~p~ 134 (214)
.+.+|+++|++.+|+|||++|.+. +|.|.+||| |++.+||+||++||||+.. ...++... +.++.
T Consensus 17 ~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~----~~~~~ 92 (160)
T 1rya_A 17 PLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ----HFYDD 92 (160)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEE----EEESS
T ss_pred cEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEe----EEEcc
Confidence 356888889988899999999764 489999999 9999999999999999983 23333321 22211
Q ss_pred hhhhhhccccCCCc-cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC--ccCCHHHHHHHHH
Q 028086 135 EVREKLKHQWGGDW-KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA--VDFKKPVYKEVFT 207 (214)
Q Consensus 135 ~~~~~l~~~~~~~~-~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~--~~~~~~~~~~~l~ 207 (214)
.. .+... .+...++|.+....+ ++.. +.+|+.+++|++++++.++. .++.+.+++....
T Consensus 93 ~~-------~~~~~~~~~~~~~f~~~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~~~ 154 (160)
T 1rya_A 93 NF-------SGTDFTTHYVVLGFRFRVSEE--ELLL-----PDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKR 154 (160)
T ss_dssp BT-------TBSSSCEEEEEEEEEEECCGG--GCCC-----CSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHHHH
T ss_pred cc-------cCCCcCcEEEEEEEEEEcCcc--cccc-----CCCccceEEEecHHHHhhccccCHHHHHHHHHHhh
Confidence 10 00000 122345555554322 2222 24588999999999998753 3555666655543
No 22
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.72 E-value=4.6e-17 Score=127.83 Aligned_cols=123 Identities=15% Similarity=0.243 Sum_probs=74.0
Q ss_pred CccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeec--cceEEec
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEV--PYWLTYD 131 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~--~~~~~~~ 131 (214)
..++.++++|++.+|+|||++|... +|.|.+||| |++.+||+||++||||++. ..++... .....+.
T Consensus 25 ~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 104 (165)
T 3oga_A 25 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKT 104 (165)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEe
Confidence 3355566667778899999998753 389999999 9999999999999999984 2222211 1111233
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHH
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKE 204 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~ 204 (214)
|+... ......+++++........+.. .+|+.+++|++++++.++.. +..+.+++.
T Consensus 105 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~ 161 (165)
T 3oga_A 105 YADGR-----------QEEIYMIYLIFDCVSANRDICI------NDEFQDYAWVKPEELALYDLNVATRHTLAL 161 (165)
T ss_dssp C--CC-----------EEEEEEEEEEEEEEESCCCCCC------CTTEEEEEEECGGGGGGSCBCHHHHHHHHH
T ss_pred cCCCC-----------ceeEEEEEEEEEeeccCCCccC------CchheeeEEccHHHHhhCCCCHHHHHHHHH
Confidence 43321 0111122222222211112222 25889999999999998755 455555543
No 23
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.72 E-value=6.6e-17 Score=125.56 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=77.1
Q ss_pred CccceEEEEEEecCCcEEEEeecC------CCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec
Q 028086 65 GYRRNVGICLINSSKKIFAASRLD------IPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD 131 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~------~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~ 131 (214)
.++++++++|++.+|+|||++|.+ .+|.|.+||| |++.+||+||++||||+... .+++. +.+.
T Consensus 11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~----~~~~ 86 (159)
T 1sjy_A 11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA----YLGR 86 (159)
T ss_dssp CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE----EEEE
T ss_pred eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEE----Eecc
Confidence 446778888888889999999985 3589999999 99999999999999999842 23322 1222
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
++.+ .....++|.+....+. .+... +.+|+.++.|++++++.++..
T Consensus 87 ~~~~-------------~~~~~~~f~~~~~~~~-~~~~~----~~~E~~~~~W~~~~el~~~~~ 132 (159)
T 1sjy_A 87 FPDG-------------VLILRHVWLAEPEPGQ-TLAPA----FTDEIAEASFVSREDFAQLYA 132 (159)
T ss_dssp CTTS-------------CEEEEEEEEEEECSSC-CCCCC----CCSSEEEEEEECHHHHHHHHH
T ss_pred cCCC-------------ceEEEEEEEEEccCCC-ccccC----CCCceeEEEEecHHHHHHhhh
Confidence 2221 1234566777665332 12220 245899999999999988765
No 24
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.1e-17 Score=126.98 Aligned_cols=107 Identities=21% Similarity=0.403 Sum_probs=71.0
Q ss_pred ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086 68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
+.++++|++.+ |+|||++|.. +|.|.+||| ||+.+||+||++||||+....+... ...+....
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~~~~~--------- 73 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDD-NQFIERNI--------- 73 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCS-SCEEEEEE---------
T ss_pred EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccc-cccccccc---------
Confidence 45677788775 8999999876 589999999 9999999999999999985432221 11111110
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
.+...++|++........... ...+|+.+++|++++++.+++.+
T Consensus 74 -------~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~ 117 (146)
T 2jvb_A 74 -------QGKNYKIFLISGVSEVFNFKP----QVRNEIDKIEWFDFKKISKTMYK 117 (146)
T ss_dssp -------TTEEEEEEEECCCCSSSCCCC----CCSSSCCCEEEEEHHHHHTGGGC
T ss_pred -------CCceEEEEEEEeccccccCCc----CCcchhheeEEeEHHHHHhhhcc
Confidence 122334444443222111111 13468899999999999987763
No 25
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.72 E-value=5.4e-17 Score=125.63 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=72.3
Q ss_pred EEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhcccc
Q 028086 73 CLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQW 144 (214)
Q Consensus 73 vI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~ 144 (214)
+|++.+|+|||++|... +|.|.+||| ||+.+||+||++||||++. ..+++. +.+.++..
T Consensus 10 ~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~--------- 76 (153)
T 3shd_A 10 CVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM----HQWIAPDK--------- 76 (153)
T ss_dssp EEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEE----EEECCTTS---------
T ss_pred EEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEE----EEEecCCC---------
Confidence 44566899999998632 478999999 9999999999999999984 233322 22333321
Q ss_pred CCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh---hcCccCCHHHHHHHHH
Q 028086 145 GGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL---ERAVDFKKPVYKEVFT 207 (214)
Q Consensus 145 ~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~---~~~~~~~~~~~~~~l~ 207 (214)
.....++|++...... .... ++.|+.+++|++++++. ....+..+..++..+.
T Consensus 77 ----~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~ 132 (153)
T 3shd_A 77 ----TPFLRFLFAIELEQIC-PTQP-----HDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQS 132 (153)
T ss_dssp ----CCEEEEEEEEECSSCC-CCCC-----CSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHHH
T ss_pred ----ceEEEEEEEEEccccC-cCCC-----CcccceeeEEecHHHhhccccccCchHHHHHHHHHh
Confidence 2334566777665321 1222 34689999999999993 2223444444544443
No 26
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.72 E-value=2.7e-17 Score=132.59 Aligned_cols=110 Identities=15% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCccceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccceEEe
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSAE---VLAEVPYWLTY 130 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~~~~~ 130 (214)
..++++|+++|++.+|+|||++|... +|.|.+ ||| ||+++||+||++||||+.... .++.. .+..
T Consensus 29 ~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~--~~~~ 106 (190)
T 1hzt_A 29 TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF--RYRA 106 (190)
T ss_dssp --CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTC--EEEE
T ss_pred CceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeE--EEEe
Confidence 34567889999998999999999653 589999 888 999999999999999998432 22211 1111
Q ss_pred cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 131 DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 131 ~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
.++.+. ......++|++...+ ++.+ +++|+.+++|++++++.+++
T Consensus 107 ~~~~~~-----------~~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~ 151 (190)
T 1hzt_A 107 TDPSGI-----------VENEVCPVFAARTTS---ALQI-----NDDEVMDYQWCDLADVLHGI 151 (190)
T ss_dssp ECTTSC-----------EEEEECCEEEEEBCS---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred eCCCCC-----------cceEEEEEEEEecCC---CCcC-----CccceeeEEEecHHHHHHHH
Confidence 222211 012233556666432 2222 24589999999999998774
No 27
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=132.30 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=75.9
Q ss_pred CccceEEEEEEec-CCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCch
Q 028086 65 GYRRNVGICLINS-SKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 65 ~~~~~v~vvI~~~-~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~ 135 (214)
..+.+|+++|++. +++|||++|... +|.|.+||| ||+.+||+||++||||++.. .+++. ...+.++..
T Consensus 24 ~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~---~~~~~~~~~ 100 (199)
T 3h95_A 24 SHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI---RQQHTNPGA 100 (199)
T ss_dssp --CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE---EECC-----
T ss_pred cccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE---EeeecCCCC
Confidence 4456777777775 489999998653 489999999 99999999999999999842 22221 111222221
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHHHHHH
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVYKEVF 206 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~~~~l 206 (214)
......+|++........+.+ +++|+.+++|++++++.++.. +..+.+.+.++
T Consensus 101 -------------~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~ 155 (199)
T 3h95_A 101 -------------FGKSDMYIICRLKPYSFTINF-----CQEECLRCEWMDLNDLAKTENTTPITSRVARLLL 155 (199)
T ss_dssp -----------------CEEEEEEEEESCCCCCC-----CTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHH
T ss_pred -------------ceeEEEEEEEEEcCCCcccCC-----CccceeeeEEEeHHHHhhhhhcChHHHHHHHHHH
Confidence 122345566666533323332 356899999999999998654 34444444443
No 28
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.71 E-value=8.8e-17 Score=125.34 Aligned_cols=118 Identities=17% Similarity=0.308 Sum_probs=79.3
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
...++++|++.+|+|||++|.+. +|.|.+||| |++.+||+||++||||+... .+... ..+.+.++.
T Consensus 29 ~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~--~~~~~~~~~-- 104 (158)
T 3hhj_A 29 LIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL--TFASHGYET-- 104 (158)
T ss_dssp EEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECSS--
T ss_pred EEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE--EEEeeccCC--
Confidence 45566777788899999999754 389999999 99999999999999999842 22111 112222211
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
.....++|.+....+ .+ ...|..+++|++++++.++.. +..+.+++.+.+.+
T Consensus 105 ------------~~~~~~~~~~~~~~~--~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l 157 (158)
T 3hhj_A 105 ------------FHLLMPLYFCSHYKG--VA-------QGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNFF 157 (158)
T ss_dssp ------------CEEEEEEEEESCCBS--CC-------CCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHHC-
T ss_pred ------------cEEEEEEEEEEECCC--cc-------CCccccceEEEcHHHHhhCCCCcchHHHHHHHHHhc
Confidence 122334444443321 22 234788999999999998776 56788888877653
No 29
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.70 E-value=7.9e-17 Score=125.90 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=77.1
Q ss_pred ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeecc-ce------EEec
Q 028086 66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVP-YW------LTYD 131 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~-~~------~~~~ 131 (214)
.+.+|+++|++ +|+|||++|.+ +|.|.+||| ||+.+||+||++||||++. ...++... .. ..+.
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 5 RHFTVSVFIVC-KDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp SCEEEEEEEEE-TTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred ceEEEEEEEEE-CCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence 35667777777 78999999986 589999999 9999999999999999984 22222110 00 0011
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC-ccCC-HHHHHHHHH
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA-VDFK-KPVYKEVFT 207 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~-~~~~-~~~~~~~l~ 207 (214)
.|.... ..... .......++|++....+ .+.. +++|+.+++|++++++.++. .+.. +.+.++..+
T Consensus 83 ~p~~~~---~~~~~-~~~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 149 (159)
T 3f6a_A 83 NPIHTI---LGDVS-PNHSHIDFVYYATTTSF--ETSP-----EIGESKILKWYSKEDLKNAHNIQENILVMATEALD 149 (159)
T ss_dssp CCSEEE---EECSS-SSSCEEEEEEEEECSCS--CCCC-----CTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHH
T ss_pred Cccccc---cccCC-CCceEEEEEEEEEeCCC--CcCC-----CCCcccceEEeeHHHHhhCcCCChhHHHHHHHHHH
Confidence 110000 00000 00112334566665433 2222 24588999999999999887 3433 344455444
No 30
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.70 E-value=4.4e-17 Score=124.92 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=78.9
Q ss_pred ccceEEEEEEec-CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 66 YRRNVGICLINS-SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 66 ~~~~v~vvI~~~-~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
.+.+|+++|+++ +|+|||++|. +|.|.+||| |++.+||+||++||||+.. ...++.... +.++...
T Consensus 17 ~~~~~~~vi~~~~~~~vLl~~r~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~---~~~~~~~- 90 (148)
T 2azw_A 17 TRYAAYIIVSKPENNTMVLVQAP--NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADE---YFYSNHR- 90 (148)
T ss_dssp ECCEEEEECEEGGGTEEEEEECT--TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE---EEEETTT-
T ss_pred eeeEEEEEEECCCCCeEEEEEcC--CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEE---EEcCCCC-
Confidence 356777788876 6899999984 489999999 9999999999999999984 233332211 1111110
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
........++|.+....+ ... ..+|+.+++|++++++.++.. +..+.+++++++.
T Consensus 91 --------~~~~~~~~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 146 (148)
T 2azw_A 91 --------QTAYYNPGYFYVANTWRQ--LSE------PLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLAA 146 (148)
T ss_dssp --------TEEEEEEEEEEEEEEEEE--CSS------CC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHHC
T ss_pred --------CcceEEEEEEEEEEcCcC--CcC------CCCceeeEEEeeHHHHHhhhcchhHHHHHHHHHHh
Confidence 001122345566655432 111 124778999999999998766 4556777777643
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.70 E-value=1.4e-16 Score=128.55 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=80.3
Q ss_pred ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~ 138 (214)
.+.+|+++|++ +|+|||++|.+. +|.|.+||| ||+++||+||++||||+... ..... . .+.++.
T Consensus 39 ~~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~-~--~~~~~~---- 109 (189)
T 3cng_A 39 PKVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVE-IRELY-A--VYSLPH---- 109 (189)
T ss_dssp CEEEEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEE-EEEEE-E--EEEEGG----
T ss_pred CceEEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccc-cceeE-E--EEecCC----
Confidence 36677777776 789999999764 489999999 99999999999999999842 11111 1 122221
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh--hcCccCCHHHHHHHHHhh
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL--ERAVDFKKPVYKEVFTVF 209 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~--~~~~~~~~~~~~~~l~~~ 209 (214)
.....++|++....+ ++.. .+|+.+++|++++++. .+..+..+.++++++...
T Consensus 110 ----------~~~~~~~f~~~~~~~--~~~~------~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~ 164 (189)
T 3cng_A 110 ----------ISQVYMLFRAKLLDL--DFFP------GIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEER 164 (189)
T ss_dssp ----------GTEEEEEEEEEECCS--CCCC------CTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHH
T ss_pred ----------CcEEEEEEEEEeCCC--ccCC------CccceeEEEECHHHcCcccccChHHHHHHHHHHHhc
Confidence 133556777776533 2221 3588999999999998 455566566666666543
No 32
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.70 E-value=7.2e-17 Score=126.78 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=77.0
Q ss_pred CccceEEEEEEecC-CcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086 65 GYRRNVGICLINSS-KKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP 134 (214)
Q Consensus 65 ~~~~~v~vvI~~~~-g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~ 134 (214)
..+.+|.++|++++ |+|||++|.+.+ |.|++||| |++.+||+||++||||+.. .++++. +.+.++.
T Consensus 8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~ 83 (161)
T 3exq_A 8 PVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGT----CEWFDDD 83 (161)
T ss_dssp CEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEE----EEEECSS
T ss_pred CceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEE----EecccCC
Confidence 34667777777776 799999988643 68999999 9999999999999999983 333332 1222211
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHH
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFT 207 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~ 207 (214)
.. .....++|.+....+ .+. ..|..+++|++++++.++.. +..+.+++.+++
T Consensus 84 ~~------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 136 (161)
T 3exq_A 84 RQ------------HRKLGLLYRASNFTG--TLK-------ASAEGQLSWLPITALTRENSAASLPEFLQVFTG 136 (161)
T ss_dssp CS------------SEEEEEEEEECCEES--CCC-------GGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred CC------------eEEEEEEEEEeccCC--ccC-------CCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence 10 111223333332221 222 23677899999999998766 445667776655
No 33
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.70 E-value=5e-16 Score=123.51 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=78.9
Q ss_pred CccceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF 132 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~ 132 (214)
.++++++++|++.+|+|||++|... +|.|.+ ||| |++.+||+||++||||+... ..++. +.+.+
T Consensus 35 ~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~----~~~~~ 110 (180)
T 2fkb_A 35 LRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQ----FYFED 110 (180)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEE----EEEEE
T ss_pred ceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEE----EEecC
Confidence 3456788888898999999998754 578999 999 99999999999999999742 22222 12211
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc---cCCHHHHHHHHHh
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTV 208 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~---~~~~~~~~~~l~~ 208 (214)
+. .....++|++...+ .+.+ +..|+.+++|++++++.+++. +..+.++..++..
T Consensus 111 ~~--------------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~ 167 (180)
T 2fkb_A 111 KN--------------CRVWGALFSCVSHG---PFAL-----QEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKR 167 (180)
T ss_dssp TT--------------EEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHH
T ss_pred CC--------------ceEEEEEEEEecCC---CcCC-----ChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHh
Confidence 10 12234556655221 2222 345899999999999998743 3334455555443
No 34
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.69 E-value=6.7e-17 Score=126.20 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=74.1
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEE-----------
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLT----------- 129 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~----------- 129 (214)
.+|+++|++ +|+|||++|.+ +|.|.+||| ||+.+||+||++||||++. ...++....+..
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE 79 (156)
T ss_dssp EEEEEECEE-TTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred eEEEEEEEE-CCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence 456777777 88999999876 589999999 9999999999999999983 122211111000
Q ss_pred --ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086 130 --YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF 206 (214)
Q Consensus 130 --~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l 206 (214)
..+++. .......+|++...+ .|+.+++|++++++.++.. +..+.+++.++
T Consensus 80 ~~~~~~~~------------~~~~~~~~f~~~~~~--------------~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 133 (156)
T 1k2e_A 80 EVVKYPEE------------THIHFDLIYLVKRVG--------------GDLKNGEWIDVREIDRIETFPNVRKVVSLAL 133 (156)
T ss_dssp EEEECSSC------------EEEEEEEEEEEEEEE--------------ECCCSCEEEEGGGGGGSCBSTTHHHHHHHHH
T ss_pred eeecCCCC------------ceEEEEEEEEEEecC--------------CcEeeeEEeCHHHHhcCCCChHHHHHHHHHH
Confidence 011110 001122234443221 2677899999999998765 66677887776
Q ss_pred Hhh
Q 028086 207 TVF 209 (214)
Q Consensus 207 ~~~ 209 (214)
+.+
T Consensus 134 ~~l 136 (156)
T 1k2e_A 134 STL 136 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 35
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.69 E-value=1.4e-16 Score=121.04 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=76.3
Q ss_pred ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
+.++++|++.+|+|||++|.+. +|.|++||| |++.+||+||++||||+.. ...++. +.+.++.
T Consensus 9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~~--- 81 (140)
T 2rrk_A 9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVAS----HQREVSG--- 81 (140)
T ss_dssp EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEE----EEEEETT---
T ss_pred ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEE----EEEecCC---
Confidence 3444455578899999998654 489999999 9999999999999999984 223322 2222211
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
.....++|.+....+ .+. ..|+.+++|++++++.++.. +..+.+++.+++.
T Consensus 82 -----------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 133 (140)
T 2rrk_A 82 -----------RIIHLHAWHVPDFHG--TLQ-------AHEHQALVWCSPEEALQYPLAPADIPLLEAFMAL 133 (140)
T ss_dssp -----------EEEEEEEEEESEEEE--CCC-------CSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHH
T ss_pred -----------cEEEEEEEEEEeeCC--CcC-------CCccceeEEeCHHHHhhCCCChhHHHHHHHHHHH
Confidence 112334555544321 111 24778899999999998876 4557777777654
No 36
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.69 E-value=1.3e-16 Score=122.84 Aligned_cols=116 Identities=20% Similarity=0.392 Sum_probs=78.7
Q ss_pred ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
..++++|++.+|+|||++|... +|.|.+||| |++.+||+||++||||+.. ..+++. +.+.++..
T Consensus 22 ~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~~~-- 95 (153)
T 3ees_A 22 IPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLA----CTHSYGDV-- 95 (153)
T ss_dssp EEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEE----EEEEETTE--
T ss_pred EEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEE----EEEecCCC--
Confidence 4556666778899999999764 389999999 9999999999999999983 233332 22222211
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT 210 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~ 210 (214)
....++|.+....+ .+ ...|+.+++|++++++.++.. +..+.+++.+.+.+.
T Consensus 96 ------------~~~~~~~~~~~~~~--~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 148 (153)
T 3ees_A 96 ------------GILILFYEILYWKG--EP-------RAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALG 148 (153)
T ss_dssp ------------EEEEEEEEECEEES--CC-------CCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred ------------eEEEEEEEEEECCC--Cc-------CCCccceEEEecHHHhhhCCCCcchHHHHHHHHHhhc
Confidence 12234555544322 11 234788999999999998766 445667777766543
No 37
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.68 E-value=2.2e-16 Score=121.80 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=65.7
Q ss_pred EEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccc
Q 028086 73 CLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQ 143 (214)
Q Consensus 73 vI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~ 143 (214)
+|++.+|+|||++|.+. ++.|.+||| |++.+||+||++||||++. ..+++. +.+.++...
T Consensus 13 ~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~~------- 81 (153)
T 2b0v_A 13 AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGI----YHWTCASNG------- 81 (153)
T ss_dssp EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEE----EEEEETTTT-------
T ss_pred EEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEE----EEEeCCCCC-------
Confidence 34456889999998764 368999999 9999999999999999984 223322 223322210
Q ss_pred cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
.....++|.+........ . ..++|+.+++|++++++.++.
T Consensus 82 -----~~~~~~~f~~~~~~~~~~-~-----~~~~e~~~~~W~~~~el~~~~ 121 (153)
T 2b0v_A 82 -----TTYLRFTFSGQVVSFDPD-R-----KLDTGIVRAAWFSIDEIRAKQ 121 (153)
T ss_dssp -----EEEEEEEEEEEEEEECTT-S-----CCCTTEEEEEEEEHHHHHHTG
T ss_pred -----cEEEEEEEEEEeCCCCCC-C-----CCCCCeeeEEEecHHHHhhhh
Confidence 112334566655432110 1 124588999999999999863
No 38
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.68 E-value=1.9e-16 Score=124.91 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=81.4
Q ss_pred cceEEEEEEecCCcEEEEeecCC----CCCee-cCCC-----CCHHHHHHHHHHHHhCCCccee-eeeccceEEec-CCc
Q 028086 67 RRNVGICLINSSKKIFAASRLDI----PDSWQ-MPQN-----EDPKVAALRELKEETGVSSAEV-LAEVPYWLTYD-FPP 134 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~----~g~W~-lPgG-----Es~~eAA~REl~EETGl~~~~~-l~~~~~~~~~~-~p~ 134 (214)
+++|+++|++.+|+|||++|... +|.|. +||| ||+.+||+||++||||+..... +... ..+. ++.
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~---~~~~~~~~ 110 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPL---ASFSPFQT 110 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEE---EEECSSSS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEE---EEEeccCC
Confidence 67788888999999999998643 58998 9999 9999999999999999984221 1111 1111 111
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc---cCCHHHHHHHHHhhc
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTVFT 210 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~---~~~~~~~~~~l~~~~ 210 (214)
. .....++|.+... + ++.+ ++.|+.+++|++++++.++.. +..+.+++.+...++
T Consensus 111 ~-------------~~~~~~~f~~~~~-~--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~ 168 (171)
T 1q27_A 111 T-------------LSSFMCVYELRSD-A--TPIF-----NPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR 168 (171)
T ss_dssp C-------------CSSEEEEEEEECC-C--CCCS-----CTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred C-------------CccEEEEEEEEEC-C--cccc-----CchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 1 0124556666552 2 2332 235888999999999986544 456777777766553
No 39
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.68 E-value=1.5e-16 Score=127.20 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=76.7
Q ss_pred cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
++.++++|++.+|+|||++|.+. +|.|.+||| |++.+||+||++||||++. ...++. +.+.++...
T Consensus 24 ~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~----~~~~~~~~~- 98 (176)
T 3q93_A 24 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ----IVFEFVGEP- 98 (176)
T ss_dssp EEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEE----EEEEETTCS-
T ss_pred CcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEE----EEEEcCCCC-
Confidence 45556666778899999998654 489999999 9999999999999999984 333332 222222110
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
.....++|++....+ .+. ..|..+++|++++++..+.. +..+.+++.+++.
T Consensus 99 -----------~~~~~~~f~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 150 (176)
T 3q93_A 99 -----------ELMDVHVFCTDSIQG--TPV-------ESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQK 150 (176)
T ss_dssp -----------CEEEEEEEEESCEES--CCC-------CCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTT
T ss_pred -----------cEEEEEEEEEECCCC--CcC-------CCcceeeEEeeHHHccccccCcchHHHHHHHHcC
Confidence 112234444432211 222 23667789999999987765 5567777777653
No 40
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.66 E-value=1.9e-16 Score=122.35 Aligned_cols=107 Identities=22% Similarity=0.175 Sum_probs=68.0
Q ss_pred cceEEEEEEecCCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~ 138 (214)
+.+|++++++.+|+|||+++.+.+ +.|++||| ||+++||+||++||||++...+ ..... + +..+ +
T Consensus 5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~-~-~~~~-~--- 77 (145)
T 2w4e_A 5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEW-VPLPG-F-YPQP-S--- 77 (145)
T ss_dssp CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEE-EECCC-B-BSCT-T---
T ss_pred CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeE-EEEec-C-cCCC-C---
Confidence 457888888999999888764332 48999999 9999999999999999984321 11111 1 1111 1
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
......++|++...... .... +++|+.+++|++++++.+++.
T Consensus 78 ---------~~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~w~~~~el~~~~~ 119 (145)
T 2w4e_A 78 ---------ISGVVFYPLLALGVTLG-AAQL-----EDTETIERVVLPLAEVYRMLE 119 (145)
T ss_dssp ---------TCCCEEEEEEEEEEEEC--------------CEEEEEEEHHHHHHHHH
T ss_pred ---------ccCceEEEEEEEecccC-CCCC-----CCCCeEEEEEEeHHHHHHHHH
Confidence 12344566666532111 2222 345889999999999988765
No 41
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.65 E-value=7.1e-16 Score=135.07 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=87.7
Q ss_pred CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCch
Q 028086 65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~ 135 (214)
..+.+|+++|+ .+|+|||++|.+. +|.|.+||| ||+++||+||++||||++.. .+++.......|.+|..
T Consensus 206 ~~~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~ 284 (352)
T 2qjt_B 206 PNFVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDR 284 (352)
T ss_dssp CEEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTS
T ss_pred CCceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCC
Confidence 44567777777 5789999999765 389999999 99999999999999999842 22221112223444432
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeCh-hHHhhc---CccCCHHHHHHHHHhhcc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSP-EQILER---AVDFKKPVYKEVFTVFTP 211 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~-~el~~~---~~~~~~~~~~~~l~~~~~ 211 (214)
.. ......+.|++....+...+.. .+.+|+.+++|+++ +++.++ ..+..+.+++++++.+.+
T Consensus 285 ~~----------~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l~~ 350 (352)
T 2qjt_B 285 SV----------RGRTISHVGLFVFDQWPSLPEI----NAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEECGK 350 (352)
T ss_dssp CT----------TSEEEEEEEEEEECSCSSCCCC----CCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHTC-
T ss_pred CC----------CccEEEEEEEEEEeCCCCCCcc----CCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHhcc
Confidence 10 0012445666766543211221 13468999999999 999985 446678899998887643
No 42
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.65 E-value=1.7e-16 Score=123.01 Aligned_cols=110 Identities=14% Similarity=0.213 Sum_probs=72.4
Q ss_pred CCCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCch
Q 028086 63 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~ 135 (214)
...++.+++++|++ +|+|||++| +|.|.+||| |++.+||+||++||||+.. .+++... .+.++..
T Consensus 15 ~~~~~~~~~~ii~~-~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~~~ 86 (154)
T 2pqv_A 15 NTVFGVRATALIVQ-NHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVV----ENRFEVD 86 (154)
T ss_dssp TEEEEEEEEECCEE-TTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE----EEEEEET
T ss_pred CceEeEEEEEEEEE-CCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEE----eeeecCC
Confidence 34456777777775 789999999 589999999 9999999999999999984 2233222 1111111
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
. ...+...++|.+....+... ... +++|+.+++|++++++.++..
T Consensus 87 ~----------~~~~~~~~~f~~~~~~~~~~-~~~----~~~e~~~~~W~~~~el~~~~~ 131 (154)
T 2pqv_A 87 G----------VSYHNIEFHYLVDLLEDAPL-TMQ----EDEKRQPCEWIDLDKLQNIQL 131 (154)
T ss_dssp T----------EEEEEEEEEEEEEESSCCCS-EEE----ETTEEEEEEEEEGGGGGGSCE
T ss_pred C----------CcceEEEEEEEEEecCCCCc-ccC----CCCceeeEEEeEHHHHhhcCc
Confidence 0 00122345677766543211 111 235788999999999998654
No 43
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.64 E-value=1e-15 Score=123.54 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=73.0
Q ss_pred CccceEEEEEEecCC--cEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086 65 GYRRNVGICLINSSK--KIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD 131 (214)
Q Consensus 65 ~~~~~v~vvI~~~~g--~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~ 131 (214)
+.+.++++++++.+| +|||++|.+. +|.|.+||| ||+++||+||++||||++. .+.++.....+.
T Consensus 32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-- 109 (194)
T 1nqz_A 32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT-- 109 (194)
T ss_dssp -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE--
T ss_pred CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccC--
Confidence 456777777778888 9999998752 589999999 9999999999999999984 334443322111
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHH-hhcC
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQI-LERA 194 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el-~~~~ 194 (214)
..+...++|++...+. .. ... +.+|+.+++|++++++ .+..
T Consensus 110 ----------------~~~~~~~~f~~~~~~~-~~~~~~-----~~~E~~~~~W~~~~el~~~~~ 152 (194)
T 1nqz_A 110 ----------------PVGFHVTPVLGRIAPE-ALDTLR-----VTPEVAQIITPTLAELRAVPL 152 (194)
T ss_dssp ----------------TTTEEEEEEEEEECGG-GGGGCC-----CCTTEEEEECCBHHHHHHSCC
T ss_pred ----------------CCCeEEEEEEEEecCC-ccccCC-----CccceeEEEEEEHHHhccCCC
Confidence 0133456677776532 11 222 3458999999999999 6543
No 44
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.64 E-value=7.2e-17 Score=120.84 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=73.5
Q ss_pred EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhh
Q 028086 70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREK 139 (214)
Q Consensus 70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~ 139 (214)
++++|++.+|+|||++|... +|.|++||| |++.+||+||++||||+... ..++.. .+.++..
T Consensus 7 ~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~----~~~~~~~---- 78 (129)
T 1mut_A 7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKL----EYEFPDR---- 78 (129)
T ss_dssp CCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCC----BCCCSSC----
T ss_pred EEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEE----EEecCCc----
Confidence 34455688899999998764 489999999 99999999999999999842 222221 1222110
Q ss_pred hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHH
Q 028086 140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEV 205 (214)
Q Consensus 140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~ 205 (214)
....++|.+....+ .+. .+|+.+++|++++++.++.. +..+.+++.+
T Consensus 79 ----------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l 126 (129)
T 1mut_A 79 ----------HITLWFWLVERWEG--EPW-------GKEGQPGEWMSLVGLNADDFPPANEPVIAKL 126 (129)
T ss_dssp ----------EEECCCEEEEECSS--CCC-------CCSSCCCEEEESSSCCTTTSCTTCHHHHHHH
T ss_pred ----------eEEEEEEEEEccCC--ccC-------CcccceeEEeCHHHcccccCCchhHHHHHHH
Confidence 11224555555422 121 24778899999999988766 4667777665
No 45
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.64 E-value=4.8e-16 Score=135.34 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=78.7
Q ss_pred ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
.+.+|+++|+ .+|+|||++|.+. +|.|.+||| ||+++||+||++||||++.. .+++.......|.+|...
T Consensus 202 ~~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T 2qjo_A 202 TFITTDAVVV-QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRS 280 (341)
T ss_dssp CEEEEEEEEE-ETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSC
T ss_pred CceEEEEEEE-eCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCC
Confidence 4567777776 5789999999764 489999999 99999999999999999842 233222122334444321
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---CccCCHHHHHHHHHh
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AVDFKKPVYKEVFTV 208 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~~~~~~~~~~~l~~ 208 (214)
. ......++|++....+. .... .+++|+.+++|++++++.++ ..+..+.++++++..
T Consensus 281 ~----------~~~~~~~~f~~~~~~~~-~~~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~~ 340 (341)
T 2qjo_A 281 L----------RGRTITHAYFIQLPGGE-LPAV----KGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSK 340 (341)
T ss_dssp T----------TSCEEEEEEEEECCSSS-CCCC----C------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC--
T ss_pred C----------CCcEEEEEEEEEecCCC-cCcc----CCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHhc
Confidence 0 01223466777654332 1111 13458899999999999986 446667777776543
No 46
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.64 E-value=1.2e-16 Score=136.68 Aligned_cols=107 Identities=14% Similarity=0.286 Sum_probs=68.8
Q ss_pred ceEEEEEEec-CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086 68 RNVGICLINS-SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK 141 (214)
Q Consensus 68 ~~v~vvI~~~-~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~ 141 (214)
++++++|++. +|+|||++|.+.+|.|.+||| ||+++||+||++||||++...+... ..+....
T Consensus 102 ~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~-~~~~~~~---------- 170 (271)
T 2a6t_A 102 PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINP-NEFIDMT---------- 170 (271)
T ss_dssp CEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCT-TCEEEEE----------
T ss_pred CeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeee-eeeccCC----------
Confidence 4567778776 489999999876799999999 9999999999999999985433221 1111111
Q ss_pred cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+.++..++|++........... .+.+|+.+++|++++++.++..
T Consensus 171 ------~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~ 214 (271)
T 2a6t_A 171 ------IRGQNVRLYIIPGISLDTRFES----RTRKEISKIEWHNLMDLPTFKK 214 (271)
T ss_dssp ------ETTEEEEEEEECCCCTTCCCC----------EEEEEEEEGGGSTTCC-
T ss_pred ------cCCceEEEEEEEEecCcccCCC----CCccceeEEEEEEHHHHHHHHh
Confidence 1133445565554322111111 1346899999999999987643
No 47
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.63 E-value=2.6e-16 Score=131.08 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=78.2
Q ss_pred CccceEEEEEE---ecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086 65 GYRRNVGICLI---NSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF 132 (214)
Q Consensus 65 ~~~~~v~vvI~---~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~ 132 (214)
..+.+|+++|+ +++++|||++|... +|.|.+||| ||+.+||+||++||||++.. +.++ .+..
T Consensus 11 ~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~------~~~~ 84 (226)
T 2fb1_A 11 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVG------AFGA 84 (226)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEE------EECC
T ss_pred CCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEE------EeCC
Confidence 34667788887 45679999999764 389999999 99999999999999999842 2222 2222
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~ 209 (214)
+... +. .......|++....+ .... +.+|+.+++|++++++.++..+ .+.+++.++..+
T Consensus 85 ~~r~---------~~-~~~v~~~y~a~~~~~--~~~~-----~~~e~~~~~W~~~~el~~l~~d-h~~il~~a~~rl 143 (226)
T 2fb1_A 85 IDRD---------PG-ERVVSIAYYALININ--EYDR-----ELVQKHNAYWVNINELPALIFD-HPEMVDKAREMM 143 (226)
T ss_dssp TTSS---------SS-SCEEEEEEEEECCTT--SSCH-----HHHHHTTEEEEETTSCCCBSTT-HHHHHHHHHHHH
T ss_pred CCcC---------CC-ceEEEEEEEEEecCc--cccc-----CCccccceEEEEHHHhhhccCC-HHHHHHHHHHHH
Confidence 2110 00 112334455554432 1111 1247889999999999876554 345666665544
No 48
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.63 E-value=2e-16 Score=126.29 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=72.3
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~ 136 (214)
+.+|++++++.+|+|||++|.+. +|.|++||| ||+.+||+||++||||+... ..++.. +..+
T Consensus 41 ~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-----~~~~--- 112 (182)
T 2yvp_A 41 VAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSF-----HPQP--- 112 (182)
T ss_dssp CEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCB-----CSCT---
T ss_pred CCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEE-----eCCC---
Confidence 35778888888999999998653 479999999 99999999999999999842 222221 0111
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.......++|++........+. .+..|+.+++|++++++.+++.
T Consensus 113 ----------~~~~~~~~~f~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~~ 156 (182)
T 2yvp_A 113 ----------SFTAVVFHPFLALKARVVTPPT-----LEEGELLESLELPLTEVYALLA 156 (182)
T ss_dssp ----------TTBCCEEEEEEECSCEECSCCC-----CCTTCCEEEEEEEHHHHHHHHH
T ss_pred ----------CccccEEEEEEEeccccCCCCC-----CCCCceEEEEEEEHHHHHHHHH
Confidence 1123445666655321111221 1346899999999999998765
No 49
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.63 E-value=3.4e-16 Score=125.87 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=77.7
Q ss_pred ceEEEEEEe---c----CCcEEEEeec---------CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeec
Q 028086 68 RNVGICLIN---S----SKKIFAASRL---------DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEV 124 (214)
Q Consensus 68 ~~v~vvI~~---~----~g~vLL~rR~---------~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~ 124 (214)
.+|+++|+. . +++|||++|. ..+|.|.+||| ||+.+||+||++||||++. .+.++.
T Consensus 28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~- 106 (187)
T 3i9x_A 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGV- 106 (187)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEE-
T ss_pred ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE-
Confidence 566666653 2 4689999994 23589999999 9999999999999999984 233322
Q ss_pred cceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK 203 (214)
Q Consensus 125 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~ 203 (214)
+..+... +. ......+|.+........... ..+|+.+++|++++++.++.. +..+.+++
T Consensus 107 -----~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~l~~~~~~il~ 166 (187)
T 3i9x_A 107 -----FDKPGRD---------PR-GWIISRAFYAIVPPEALEKRA-----AGDDAAEIGLFPMTEALELPLAFDHLDMLK 166 (187)
T ss_dssp -----ECCTTSS---------TT-SSEEEEEEEEECCHHHHHHHH-----HSTTTTTEEEEEHHHHTTSCBSTTHHHHHH
T ss_pred -----EcCCccC---------CC-CCEEEEEEEEEEcCcccCCcC-----CCCceeEEEEEeHHHcccCCCCccHHHHHH
Confidence 2222110 00 012233444433322111111 134788899999999998655 55677888
Q ss_pred HHHHhhcc
Q 028086 204 EVFTVFTP 211 (214)
Q Consensus 204 ~~l~~~~~ 211 (214)
++++.+..
T Consensus 167 ~a~~~l~~ 174 (187)
T 3i9x_A 167 KAFSAITE 174 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877654
No 50
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.63 E-value=1e-15 Score=124.56 Aligned_cols=107 Identities=22% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCccceEEEEEE--ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086 64 EGYRRNVGICLI--NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP 134 (214)
Q Consensus 64 ~~~~~~v~vvI~--~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~ 134 (214)
.+++..++++|+ +.+++|||++|.+.+|.|.+||| ||+++||+||++||||++. .++++. +.++.
T Consensus 37 ~~~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~------~~~~~ 110 (194)
T 2fvv_A 37 DGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGI------FENQE 110 (194)
T ss_dssp TSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE------EEETT
T ss_pred CCccccEEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEE------EEcCC
Confidence 455666677766 34689999999876799999999 9999999999999999983 222222 11111
Q ss_pred hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.....++|++...+....... ..++..+++|++++++.+++.
T Consensus 111 --------------~~~~~~~f~~~~~~~~~~~~~-----~~e~~~~~~W~~~~el~~~l~ 152 (194)
T 2fvv_A 111 --------------RKHRTYVYVLIVTEVLEDWED-----SVNIGRKREWFKIEDAIKVLQ 152 (194)
T ss_dssp --------------TTEEEEEEEEEEEEECSSCHH-----HHHHCCCEEEEEHHHHHHHHT
T ss_pred --------------CceEEEEEEEEEccccCCCCC-----cccccceEEEEEHHHHHHHHh
Confidence 122345566654321101110 112346899999999987654
No 51
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.63 E-value=6.6e-16 Score=124.81 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=72.9
Q ss_pred ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086 68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
+.++++|++ +|+|||++|.. +|.|.+||| |++.+||+||++||||++. .++++... +.++....
T Consensus 5 ~v~~~vi~~-~~~vLL~~r~~-~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~----~~~~~~~~--- 75 (188)
T 3fk9_A 5 RVTNCIVVD-HDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFS----MVIFDEGK--- 75 (188)
T ss_dssp EEEEEEEEE-TTEEEEEECTT-TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEE----EEEEETTE---
T ss_pred EEEEEEEEE-CCEEEEEEeCC-CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEE----EEecCCCc---
Confidence 445555554 78999999865 699999999 9999999999999999983 33333321 11111100
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV 208 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~ 208 (214)
.......++|.+....+ .+.. ..|..+++|++++++.++.. +..+.+++.+++.
T Consensus 76 ------~~~~~~~~~f~a~~~~~--~~~~------~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~ 130 (188)
T 3fk9_A 76 ------IVSEWMLFTFKATEHEG--EMLK------QSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS 130 (188)
T ss_dssp ------EEEEEEEEEEEESCEES--CCCS------EETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred ------ceEEEEEEEEEEECCCC--CCcC------CCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence 00000223333332211 2211 12446899999999998765 5566777777654
No 52
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.61 E-value=1.6e-15 Score=120.16 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=70.9
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ 143 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~ 143 (214)
.++++|++.+|+|||++|. +|.|.+||| ||+.+||+||++||||++.... . ....|.++
T Consensus 17 ~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~---~l~~~~~~---------- 80 (163)
T 3f13_A 17 RRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINSM-L---YLFDHITP---------- 80 (163)
T ss_dssp EEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEE-E---EEEEEECS----------
T ss_pred EEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCccccee-E---EEEEEecC----------
Confidence 3455555677899999986 489999999 9999999999999999984221 1 11223322
Q ss_pred cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhc
Q 028086 144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 210 (214)
Q Consensus 144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~ 210 (214)
....++|++.+.+ ++... +|+.+++|++.+.....+.+..+.+++.+++...
T Consensus 81 ------~~~~~~f~~~~~~---~~~~~------~E~~~~~W~~~~~~~~~l~~~~~~il~~~~~~~~ 132 (163)
T 3f13_A 81 ------FNAHKVYLCIAQG---QPKPQ------NEIERIALVSSPDTDMDLFVEGRAILRRYARLRN 132 (163)
T ss_dssp ------SEEEEEEEEEC-C---CCCCC------TTCCEEEEESSTTCSSCBCHHHHHHHHHHHHHTT
T ss_pred ------CeEEEEEEEEECC---cCccC------CCceEEEEECcccccCCCCHHHHHHHHHHHHhhh
Confidence 1234566665432 23332 3889999999544433444666777777766543
No 53
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.61 E-value=2.1e-15 Score=119.28 Aligned_cols=105 Identities=27% Similarity=0.399 Sum_probs=67.7
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE 138 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~ 138 (214)
+.+|++++++ +|+|||++|.+. ++.|.+||| ||+++||+||++||||+ ... +..... + +..+ +
T Consensus 34 ~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~-~~~l~~-~-~~~~-~--- 104 (170)
T 1v8y_A 34 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGD-LTYLFS-Y-FVSP-G--- 104 (170)
T ss_dssp CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEE-EEEEEE-E-ESCT-T---
T ss_pred CCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcC-ceeeEE-E-ecCC-C---
Confidence 4578888888 899999987543 479999999 99999999999999999 432 221111 1 1111 1
Q ss_pred hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
......++|++....+ ..... +++|+.+++|++++++.+++.
T Consensus 105 ---------~~~~~~~~f~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~~ 146 (170)
T 1v8y_A 105 ---------FTDEKTHVFLAENLKE-VEAHP-----DEDEAIEVVWMRPEEALERHQ 146 (170)
T ss_dssp ---------TBCCEEEEEEEEEEEE-CC-------------CEEEEECHHHHHHHHH
T ss_pred ---------ccccEEEEEEEEeccc-cCCCC-----CCCceEEEEEEEHHHHHHHHH
Confidence 1234556677665421 11221 345889999999999988765
No 54
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.60 E-value=4.3e-15 Score=127.09 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=74.7
Q ss_pred EEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhcccc
Q 028086 73 CLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKHQW 144 (214)
Q Consensus 73 vI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~~~ 144 (214)
++++.+++|||++|... +|.|.+||| ||+++||+||++||||++.. ++++.. .+.++
T Consensus 145 v~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~----~~~~~----------- 209 (269)
T 1vk6_A 145 VAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ----PWPFP----------- 209 (269)
T ss_dssp EEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE----EEETT-----------
T ss_pred EEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEE----ecCCC-----------
Confidence 34556789999999765 489999999 99999999999999999842 233221 12222
Q ss_pred CCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC--HHHHHHHHHh
Q 028086 145 GGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK--KPVYKEVFTV 208 (214)
Q Consensus 145 ~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~--~~~~~~~l~~ 208 (214)
++..++|++...++ ++.+ +.+|+.+++|++++++..+..+.. +.+++..+..
T Consensus 210 -----~~~~~~f~a~~~~~--~~~~-----~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l~~ 263 (269)
T 1vk6_A 210 -----QSLMTAFMAEYDSG--DIVI-----DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAM 263 (269)
T ss_dssp -----EEEEEEEEEEEEEC--CCCC-----CTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHH
T ss_pred -----CEEEEEEEEEECCC--CcCC-----CCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHHHH
Confidence 33456677776543 3333 245899999999999987654332 4555555544
No 55
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.59 E-value=6.3e-15 Score=114.12 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=70.0
Q ss_pred ccceEEEEEEecCCc----EEEEeecCCC-CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCC
Q 028086 66 YRRNVGICLINSSKK----IFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFP 133 (214)
Q Consensus 66 ~~~~v~vvI~~~~g~----vLL~rR~~~~-g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p 133 (214)
.+.+|+++|.+ +++ ||+++|...+ ..|.+||| ||+.+||+||++||||+.. ..+++. +.+.++
T Consensus 7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~ 81 (155)
T 2b06_A 7 TILTNICLIED-LETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGI----KNWPLD 81 (155)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEE----EEEECT
T ss_pred cEEEEEEEEEE-CCCCeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEE----EeeccC
Confidence 45667777766 666 9999887642 22899999 9999999999999999983 223322 112211
Q ss_pred chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHHHHHH
Q 028086 134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKEVFT 207 (214)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~l~ 207 (214)
++ .....++|.+....+ .+. ..|+.+++|++++++.++..+. .+.+++.++.
T Consensus 82 ~~-------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 134 (155)
T 2b06_A 82 TG-------------GRYIVICYKATEFSG--TLQ-------SSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA 134 (155)
T ss_dssp TS-------------CEEEEEEEEECEEEE--CCC-------CBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred CC-------------ceEEEEEEEEEecCC--CCC-------CCcceeeEEeeHHHhhhCCCChhHHHHHHHHhC
Confidence 11 122334444443321 111 2377899999999999887743 4556665543
No 56
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.58 E-value=2.9e-15 Score=125.86 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=77.0
Q ss_pred cceEEEEEE---ecCCcEEEEeecCC--CCCeecCCC-------CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086 67 RRNVGICLI---NSSKKIFAASRLDI--PDSWQMPQN-------EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF 132 (214)
Q Consensus 67 ~~~v~vvI~---~~~g~vLL~rR~~~--~g~W~lPgG-------Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~ 132 (214)
..+|+++|+ +.+++|||++|... +|.|.+||| ||+.+||+||++||||++.. +.++ .+..
T Consensus 22 ~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~------~~~~ 95 (240)
T 3gz5_A 22 LLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC------TVGN 95 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEE------EEEE
T ss_pred ccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEE------EeCC
Confidence 456777776 34469999999864 389999999 78999999999999999842 2222 1221
Q ss_pred CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC-HHHHHHHHHhhc
Q 028086 133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK-KPVYKEVFTVFT 210 (214)
Q Consensus 133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~-~~~~~~~l~~~~ 210 (214)
+... +. .....+.|++..... .... ..+|+.+++|++++++.+....+. +.+++.+++.+.
T Consensus 96 ~~r~---------~~-~~~~~~~y~a~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr 157 (240)
T 3gz5_A 96 NSRD---------AR-GWSVTVCYTALMSYQ--ACQI-----QIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLT 157 (240)
T ss_dssp SSSS---------TT-SCEEEEEEEEECCHH--HHHH-----HHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHH
T ss_pred CccC---------CC-ceEEEEEEEEEeccc--ccCC-----CCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHH
Confidence 1110 00 112334455544322 1111 124788999999999986555444 567777766543
No 57
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.57 E-value=6.6e-15 Score=114.43 Aligned_cols=115 Identities=20% Similarity=0.272 Sum_probs=73.0
Q ss_pred cceEEEEEEec---CCcEEEEeecCC---CCCeecCCC-----CCHH-HHHHHHHHHHhC-CCc--ceeeeeccceEEec
Q 028086 67 RRNVGICLINS---SKKIFAASRLDI---PDSWQMPQN-----EDPK-VAALRELKEETG-VSS--AEVLAEVPYWLTYD 131 (214)
Q Consensus 67 ~~~v~vvI~~~---~g~vLL~rR~~~---~g~W~lPgG-----Es~~-eAA~REl~EETG-l~~--~~~l~~~~~~~~~~ 131 (214)
|..+.++|++. +|+|||++|... +|.|++||| |++. +||+||++|||| +.. ...++.. .+.
T Consensus 19 ~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~----~~~ 94 (155)
T 1x51_A 19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEV----VHT 94 (155)
T ss_dssp EEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCB----CCB
T ss_pred EEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceE----EEe
Confidence 44455556665 579999998764 389999999 7886 999999999999 763 2223221 122
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc-CCHHHHHHHHHh
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVYKEVFTV 208 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~~~~~l~~ 208 (214)
|.. .....++|.+...++ .+. ..|..+++|++++++.++..+ ..+.+++.++..
T Consensus 95 ~~~--------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 149 (155)
T 1x51_A 95 FSH--------------IKLTYQVYGLALEGQ--TPV-------TTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQGQ 149 (155)
T ss_dssp CSS--------------CEEEEEEEEEECSSC--CCC-------CCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred cCC--------------ccEEEEEEEEEEcCC--CCC-------CCCCCccEEccHHHhhhcCCCHHHHHHHHHHHhc
Confidence 211 011234555554322 111 135678999999999987663 345666666554
No 58
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.56 E-value=1.5e-14 Score=119.58 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=75.7
Q ss_pred CCCCccceEEEEEEecCCcEEEEeecCCC------CCeec-CCC-----CC------HHHHHHHHHHHHhCCCc--ceee
Q 028086 62 PPEGYRRNVGICLINSSKKIFAASRLDIP------DSWQM-PQN-----ED------PKVAALRELKEETGVSS--AEVL 121 (214)
Q Consensus 62 ~~~~~~~~v~vvI~~~~g~vLL~rR~~~~------g~W~l-PgG-----Es------~~eAA~REl~EETGl~~--~~~l 121 (214)
....++..+..+|++.+|+|||++|...+ |.|.+ ||| || +++||+||++||||++. ..++
T Consensus 62 ~d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~i 141 (211)
T 3e57_A 62 YDETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFL 141 (211)
T ss_dssp TCTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEE
Confidence 34467787877888889999999997653 68998 999 87 49999999999999973 2222
Q ss_pred eeccceEEecC-CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC---
Q 028086 122 AEVPYWLTYDF-PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF--- 197 (214)
Q Consensus 122 ~~~~~~~~~~~-p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~--- 197 (214)
+. +.+.. +.+. .....+|.++.. ...+. ..|..+++|++++++.++...+
T Consensus 142 g~----~~~~~~~~~~-------------~~l~~~f~~~~~----~g~~~-----~~E~~~~~W~~~~eL~~~~~~le~w 195 (211)
T 3e57_A 142 GL----INSSTTEVSR-------------VHLGALFLGRGK----FFSVK-----EKDLFEWELIKLEELEKFSGVMEGW 195 (211)
T ss_dssp EE----EECCSSHHHH-------------TEEEEEEEEEEE----EEEES-----CTTTCEEEEEEHHHHHHHGGGCCHH
T ss_pred EE----EeccCCCCCe-------------EEEEEEEEEEeC----CceeC-----CCCeEEEEEEEHHHHHHhHhhccch
Confidence 22 22211 1111 112234555543 12222 2477889999999999885544
Q ss_pred CHHHHHHHHHhh
Q 028086 198 KKPVYKEVFTVF 209 (214)
Q Consensus 198 ~~~~~~~~l~~~ 209 (214)
.+.+++.+.+++
T Consensus 196 S~lvl~~l~~~~ 207 (211)
T 3e57_A 196 SKISAAVLLNLF 207 (211)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHH
Confidence 355665554543
No 59
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.56 E-value=5.5e-15 Score=121.03 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=68.1
Q ss_pred ceEEEEEEecCCcEEEEeecCC---CCCeecCCC------CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchh
Q 028086 68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN------EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEV 136 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG------Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~ 136 (214)
.+|++++++.+|+|||++|.+. ++.|++||| |++++||+||++||||+.... .++. + +.++.
T Consensus 44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~----~-~~~~~-- 116 (207)
T 1mk1_A 44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVD----L-DTAPG-- 116 (207)
T ss_dssp CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEE----E-CSCTT--
T ss_pred CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEE----E-EcCCC--
Confidence 4677778888999999998654 368999999 799999999999999998422 2221 1 22221
Q ss_pred hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+..+..++|++.......... ..++.|+.++.|++++++.+++.
T Consensus 117 -----------~~~~~~~~f~~~~~~~~~~~~----~~~~~E~~~~~Wv~~~el~~~~~ 160 (207)
T 1mk1_A 117 -----------FSDESVRVYLATGLREVGRPE----AHHEEADMTMGWYPIAEAARRVL 160 (207)
T ss_dssp -----------TBCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHHH
T ss_pred -----------ccccEEEEEEEEccccCCCCC----CCCCCceEEEEEEEHHHHHHHHH
Confidence 123345667766543211110 01345889999999999998876
No 60
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.54 E-value=1.1e-14 Score=117.96 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=70.4
Q ss_pred ceEEEEEEec-CCcEEEEeecC---------CCCCeecCCC----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec
Q 028086 68 RNVGICLINS-SKKIFAASRLD---------IPDSWQMPQN----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD 131 (214)
Q Consensus 68 ~~v~vvI~~~-~g~vLL~rR~~---------~~g~W~lPgG----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~ 131 (214)
.+|++++++. +++|||+++.+ .++.|++||| |++.+||+||++||||++.. ..++.. +.
T Consensus 46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~vegE~~~~aa~REl~EEtG~~~~~~~~l~~~-----~~ 120 (191)
T 3o6z_A 46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFEL-----YM 120 (191)
T ss_dssp CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECCSSCHHHHHHHHHHHHC-CCCSCEEEEEEE-----ES
T ss_pred CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeCCCCHHHHHHHHHHHHhCCccCcEEEEEEE-----Ee
Confidence 5677777875 58999998764 4578999999 99999999999999999852 223221 11
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+ + ......++|++...... ..... ...++|+.++.|++++++.+++.
T Consensus 121 ~~-~------------~~~~~~~~f~~~~~~~~-~~~~~--~~~~~E~~~~~w~~~~el~~~~~ 168 (191)
T 3o6z_A 121 SP-G------------GVTELIHFFIAEYSDNQ-RANAG--GGVEDEAIEVLELPFSQALEMIK 168 (191)
T ss_dssp CT-T------------TBCCEEEEEEEECCTTC-C----------CCSSEEEEEEHHHHHHHHH
T ss_pred CC-C------------ccCcEEEEEEEEEcccc-cccCC--CCCCCcEEEEEEEEHHHHHHHHH
Confidence 11 1 23455677777754321 11100 01145888999999999998765
No 61
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.54 E-value=1.9e-14 Score=118.20 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=69.6
Q ss_pred ceEEEEEEe-cCCcEEEEeecCC--------CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEec
Q 028086 68 RNVGICLIN-SSKKIFAASRLDI--------PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYD 131 (214)
Q Consensus 68 ~~v~vvI~~-~~g~vLL~rR~~~--------~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~ 131 (214)
.+|++++++ .+|+|||+++.+. ++.|++||| |++++||+||++||||+.... .++. + +.
T Consensus 58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~----~-~~ 132 (209)
T 1g0s_A 58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS----F-LA 132 (209)
T ss_dssp CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE----E-ES
T ss_pred CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE----E-ec
Confidence 467777788 5789999876543 257999999 999999999999999998532 2222 1 22
Q ss_pred CCchhhhhhccccCCCccCceEEEEEEEEeCCc-ceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKE-EEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~-~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.|. +.....++|++...... ..... ..++.|..++.|++++++.+++.
T Consensus 133 ~~g-------------~~~~~~~~f~a~~~~~~~~~~~~---~~~e~E~~~~~w~~~~el~~~i~ 181 (209)
T 1g0s_A 133 SPG-------------GTSERSSIMVGEVDATTASGIHG---LADENEDIRVHVVSREQAYQWVE 181 (209)
T ss_dssp CTT-------------TBCCEEEEEEEECCGGGCC-----------CCSCEEEEEEHHHHHHHHH
T ss_pred CCC-------------ccCcEEEEEEEEEccccccCCCC---CCCCCcEEEEEEEEHHHHHHHHH
Confidence 221 22445677777653211 01000 01345788999999999998766
No 62
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.53 E-value=1.2e-14 Score=118.41 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=69.9
Q ss_pred ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086 68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~ 137 (214)
.+|++++++++ +|||++|.+. ++.|++||| |++++||+||++||||+... ..++. +...++
T Consensus 50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~------~~~~~~-- 120 (198)
T 1vhz_A 50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKK------LSMAPS-- 120 (198)
T ss_dssp CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE------EECCTT--
T ss_pred CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE------EeCCCC--
Confidence 35666667766 9999987643 268999999 99999999999999999842 22222 111111
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~ 196 (214)
+.....++|++...... ... .+++|..++.|++++++.+++..
T Consensus 121 ----------~~~~~~~~f~a~~~~~~-~~~-----~~~~E~~~~~w~~~~el~~~~~~ 163 (198)
T 1vhz_A 121 ----------YFSSKMNIVVAQDLYPE-SLE-----GDEPEPLPQVRWPLAHMMDLLED 163 (198)
T ss_dssp ----------TCCCEEEEEEEEEEEEC-CCC-----CCCSSCCCEEEEEGGGGGGGGGC
T ss_pred ----------ccCcEEEEEEEEeCCcc-cCC-----CCCCceEEEEEEEHHHHHHHHHc
Confidence 12445566766643221 111 13457889999999999988763
No 63
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.52 E-value=3.8e-14 Score=125.35 Aligned_cols=126 Identities=20% Similarity=0.293 Sum_probs=76.0
Q ss_pred CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccC
Q 028086 78 SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKG 150 (214)
Q Consensus 78 ~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~ 150 (214)
+.+|||++|.. .|.|.+||| ||+++||+||++||||++. ..+++. +.|.++.... +..+...+....
T Consensus 37 ~~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~----~~~~~~~~g~-~~~~~~~~~~~~ 110 (364)
T 3fjy_A 37 SIEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCE----VEYPLSEEGK-KTRHSHDCTADT 110 (364)
T ss_dssp TEEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEE----EC---------------------
T ss_pred ceEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccce----EEEeccCCCc-ccccccccccCc
Confidence 34899999966 489999999 9999999999999999983 233322 2233322100 000000011124
Q ss_pred ceEEEEEEEEeCCcceeec----cCC-CCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 151 QAQKWFLLKFTGKEEEINL----LGD-KSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 151 ~~~~~fl~~~~~~~~~i~l----~~~-~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
...++|++...++...+.+ .+. ..+++|+.+++|++++++.+++. +..+.+++.+++.+
T Consensus 111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l 175 (364)
T 3fjy_A 111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRV 175 (364)
T ss_dssp -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5667888877654211110 000 12456899999999999998877 66677888887765
No 64
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.51 E-value=7.8e-14 Score=116.94 Aligned_cols=112 Identities=23% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCccceEEEEEEecCCcEEEEeecCC----CCCeecCC-C-----------CC---HHHHHHHHHHHHhCCCccee----
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ-N-----------ED---PKVAALRELKEETGVSSAEV---- 120 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPg-G-----------Es---~~eAA~REl~EETGl~~~~~---- 120 (214)
..++++|+++|+|.+|+|||++|+.. ||.|.+|+ | |+ +.+||+||++|||||....+
T Consensus 56 g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~ 135 (235)
T 2dho_A 56 GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEE 135 (235)
T ss_dssp TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGG
T ss_pred CceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhh
Confidence 34678899999999999999999753 58999995 5 23 59999999999999984211
Q ss_pred eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 121 LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 121 l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
+... ..+.|.++.. +.+. +...++|++...+ ++.+ +++|+.+++|++++++.+++
T Consensus 136 l~~l-~~~~y~~~~~----------~~~~~~e~~~vf~~~~~~---~~~~-----~~~Ev~~~~wv~~~el~~~l 191 (235)
T 2dho_A 136 INYL-TRIHYKAQSD----------GIWGEHEIDYILLVRMNV---TLNP-----DPNEIKSYCYVSKEELKELL 191 (235)
T ss_dssp SEEE-EEEEEEEECS----------SSBEEEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred cEEE-EEEEEeccCC----------CccceeEEEEEEEEEECC---CCcC-----ChHHEEEEEEEcHHHHHHHH
Confidence 1111 1222322211 0111 2233455555422 2333 34699999999999998753
No 65
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.51 E-value=9.8e-14 Score=113.91 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=69.1
Q ss_pred ceEEEEEEecC----CcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCch
Q 028086 68 RNVGICLINSS----KKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE 135 (214)
Q Consensus 68 ~~v~vvI~~~~----g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~ 135 (214)
.+|+++.+..+ ++|||+++.+. ++.|++||| |++++||+||++||||+... ....... + +..|
T Consensus 62 ~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~-~-~~~~-- 136 (212)
T 2dsc_A 62 DGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGD-IAECSPA-V-CMDP-- 136 (212)
T ss_dssp SEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCE-EEEECCC-E-ESCT--
T ss_pred CEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCcc-ceEEecc-E-EcCC--
Confidence 45665544322 47999886443 358999999 99999999999999999842 2111111 1 1111
Q ss_pred hhhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
.+.+...++|++.+...... .... ...+++|+.++.|++++++.+++.
T Consensus 137 -----------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~~~~ 185 (212)
T 2dsc_A 137 -----------GLSNCTIHIVTVTINGDDAENARPK-PKPGDGEFVEVISLPKNDLLQRLD 185 (212)
T ss_dssp -----------TTBCCEEEEEEEEEETTSGGGSSCC-CCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred -----------CccCceEEEEEEEEeCccccccCCC-CCCCCCceEEEEEEEHHHHHHHHH
Confidence 12344567777765432111 0000 012456899999999999988766
No 66
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=115.88 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCccceEEEEEEecCCcEEEEeecCC----CCCeecCC-C-----------CCH---HHHHHHHHHHHhCCCccee----
Q 028086 64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ-N-----------EDP---KVAALRELKEETGVSSAEV---- 120 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPg-G-----------Es~---~eAA~REl~EETGl~~~~~---- 120 (214)
..++++|+++|+|.+|+|||++|+.. ||.|.+|+ | |++ .+||+||++|||||....+
T Consensus 67 g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~ 146 (246)
T 2pny_A 67 GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED 146 (246)
T ss_dssp TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGG
T ss_pred CcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccc
Confidence 34678889999999999999999753 68999995 4 354 8999999999999984211
Q ss_pred eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086 121 LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194 (214)
Q Consensus 121 l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~ 194 (214)
+... ..+.|.++.. +.+. +...++|++...+ ++.+ +++|+.+++|++++++.+++
T Consensus 147 l~~l-~~~~y~~~~~----------~~~~~~e~~~vf~~~~~~---~~~~-----~~~Ev~~~~wv~~eel~~~l 202 (246)
T 2pny_A 147 IVFM-TIYHHKAKSD----------RIWGEHEICYLLLVRKNV---TLNP-----DPSETKSILYLSQEELWELL 202 (246)
T ss_dssp SEEE-EEEEEEEESS----------SSBEEEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred cEEE-EEEEEEecCC----------CceeeeEEEEEEEEEECC---CCCC-----ChHHeeEEEEEeHHHHHHHH
Confidence 1111 1222332211 0111 2233455555321 2333 34699999999999998753
No 67
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.48 E-value=6.5e-14 Score=116.25 Aligned_cols=112 Identities=19% Similarity=0.121 Sum_probs=70.7
Q ss_pred cceEEEEEEec-CCcEEEEeecCC----------------------------------CCCeecCCC------CCHHHHH
Q 028086 67 RRNVGICLINS-SKKIFAASRLDI----------------------------------PDSWQMPQN------EDPKVAA 105 (214)
Q Consensus 67 ~~~v~vvI~~~-~g~vLL~rR~~~----------------------------------~g~W~lPgG------Es~~eAA 105 (214)
+.+|++++++. +++|||+++.+. ++.|++||| ||+++||
T Consensus 36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA 115 (218)
T 3q91_A 36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA 115 (218)
T ss_dssp CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence 46788888884 578999986531 368999998 8999999
Q ss_pred HHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEE
Q 028086 106 LRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWK 183 (214)
Q Consensus 106 ~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~ 183 (214)
+||++||||+.. ..+.. ... +.... .+.+...++|++...... .+.......+++|+.++.
T Consensus 116 ~REl~EEtGl~~~~~~l~~-l~~---~~~~~------------g~~~~~~~~f~a~~~~~~-~~~~~~~~~d~~E~~ev~ 178 (218)
T 3q91_A 116 CKEAWEECGYHLAPSDLRR-VAT---YWSGV------------GLTGSRQTMFYTEVTDAQ-RSGPGGGLVEEGELIEVV 178 (218)
T ss_dssp HHHHHHHHCBCCCGGGCEE-EEE---EEEC---------------CCEEEEEEEEEECGGG-BCC---------CCEEEE
T ss_pred HHHHHHHhCCccccCceEE-EEE---EecCC------------CccceEEEEEEEEECCcc-cccCCCCCCCCCcEEEEE
Confidence 999999999985 33211 111 11111 123456677887765321 110000112456899999
Q ss_pred EeChhHHhhcCc
Q 028086 184 WMSPEQILERAV 195 (214)
Q Consensus 184 Wv~~~el~~~~~ 195 (214)
|++++++.+++.
T Consensus 179 wv~l~el~~~i~ 190 (218)
T 3q91_A 179 HLPLEGAQAFAD 190 (218)
T ss_dssp EEEGGGHHHHHH
T ss_pred EEEHHHHHHHHH
Confidence 999999998765
No 68
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.45 E-value=2.2e-13 Score=121.03 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=77.0
Q ss_pred cceEEEEEEecCCcEEEEeecCC---CCCeecCCC--C--CHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN--E--DPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR 137 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG--E--s~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~ 137 (214)
+..++++|+|.+|+|||++|.+. +|.|+|||| | ++++|+.||++||||++. .+.++ .+.+.|+..
T Consensus 240 ~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~gt~~~al~REl~EE~Gl~v~~~~~l~----~~~h~~~h~-- 313 (369)
T 3fsp_A 240 VPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV----SFEHAFSHL-- 313 (369)
T ss_dssp EEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECCCCC----EEEEECSSE--
T ss_pred EEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCCCcHHHHHHHHHHHhCCceeeecccc----cEEEEcceE--
Confidence 44556677778999999999764 489999999 4 789999999999999984 22222 223333211
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF 209 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~ 209 (214)
....++|.+...++ ..|+.+++|++++++.++.. +..+.+++.+.+..
T Consensus 314 ------------~~~~~~~~~~~~~~------------~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~ 362 (369)
T 3fsp_A 314 ------------VWQLTVFPGRLVHG------------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWA 362 (369)
T ss_dssp ------------EEEEEEEEEEECCS------------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHT
T ss_pred ------------EEEEEEEEEEEcCC------------CCCccccEEeeHHHhhhCCCCHHHHHHHHHHHHHh
Confidence 12334555555431 13777899999999998766 44566777666543
No 69
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.45 E-value=5.3e-13 Score=114.00 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=68.8
Q ss_pred CCccceEEEEEEe--c---CCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEE
Q 028086 64 EGYRRNVGICLIN--S---SKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLT 129 (214)
Q Consensus 64 ~~~~~~v~vvI~~--~---~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~ 129 (214)
...+.+|+++|+. . +++|||++|.+. +|.|.+||| |++++||+||++||||++. ..+. ...+
T Consensus 36 ~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~----~l~~ 111 (273)
T 2fml_A 36 EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE----QLHS 111 (273)
T ss_dssp CCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE----EEEE
T ss_pred CCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEE----EEEE
Confidence 3446677777764 2 348999999865 389999999 9999999999999999762 2221 1123
Q ss_pred ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086 130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 130 ~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
|..+... +. .....++|++...+. .. ...+|..+++|++++++.+.
T Consensus 112 ~~~~~r~---------~~-~~~~~~~y~a~~~~~--~~------~~~~E~~~~~W~~~~e~~~~ 157 (273)
T 2fml_A 112 FSRPDRD---------PR-GWVVTVSYLAFIGEE--PL------IAGDDAKEVHWFNLERHGQH 157 (273)
T ss_dssp ECCTTSS---------TT-SSEEEEEEEEECCCC--CC------CCCTTEEEEEEEEEEEETTE
T ss_pred EcCCCCC---------CC-ceEEEEEEEEEeCCC--CC------CCCcceeeEEEEEhhHhhhh
Confidence 3322210 00 122445666655432 11 13458899999999986543
No 70
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.41 E-value=1.2e-13 Score=113.74 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=64.8
Q ss_pred EEEecCCcEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCCccee--e-eeccceEEecCCchhhhhhccc
Q 028086 73 CLINSSKKIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVSSAEV--L-AEVPYWLTYDFPPEVREKLKHQ 143 (214)
Q Consensus 73 vI~~~~g~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~~~~~--l-~~~~~~~~~~~p~~~~~~l~~~ 143 (214)
++++.+++|||++|. +|.|++||| | |+++||+||++||||+..... . ......+.+.++
T Consensus 50 ~i~~~~~~vLl~~r~--~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~---------- 117 (212)
T 1u20_A 50 DRVPIRRVLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP---------- 117 (212)
T ss_dssp TTEECCEEEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT----------
T ss_pred EEEecCCEEEEEEeC--CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC----------
Confidence 345667889999984 589999999 8 999999999999999984211 0 000111222332
Q ss_pred cCCCccCceEEEEEEEEeCCcceee-cc--CCCCCcCceeeEEEeChhHHhhc
Q 028086 144 WGGDWKGQAQKWFLLKFTGKEEEIN-LL--GDKSEKPEFGEWKWMSPEQILER 193 (214)
Q Consensus 144 ~~~~~~~~~~~~fl~~~~~~~~~i~-l~--~~~~~~~E~~~~~Wv~~~el~~~ 193 (214)
.....++|++....+..... .. ....++.|+.++.|++++++.+.
T Consensus 118 -----~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~ 165 (212)
T 1u20_A 118 -----QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR 165 (212)
T ss_dssp -----SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred -----CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence 13345677776543211110 00 00123458889999999999653
No 71
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.36 E-value=2.2e-12 Score=111.81 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=75.1
Q ss_pred CCccceEEEEEEecCC---cEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceE
Q 028086 64 EGYRRNVGICLINSSK---KIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWL 128 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~g---~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~ 128 (214)
...+++|.+.+++.++ ++|++||+.. ||.| ..++| |++.+||+||++||+||... +.+.. ...+
T Consensus 115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~-~g~i 193 (300)
T 3dup_A 115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIP-VGAI 193 (300)
T ss_dssp TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEE-EEEE
T ss_pred ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccc-cceE
Confidence 4457889999988877 9999999765 6999 47787 99999999999999999841 11111 1223
Q ss_pred EecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086 129 TYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195 (214)
Q Consensus 129 ~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~ 195 (214)
+|.++... ++.....++|.+.+.. +..+. .+++|+.+++|++++|+.+++.
T Consensus 194 ~y~~~~~~----------G~~~E~~~vy~~~l~~-~~~p~-----~~~~EV~~~~~v~~~El~~~l~ 244 (300)
T 3dup_A 194 TYCMESPA----------GIKPDTLFLYDLALPE-DFRPH-----NTDGEMADFMLWPAAKVVEAVR 244 (300)
T ss_dssp EEEEEETT----------EEEEEEEEEEEEECCT-TCCCC-----CTTSSEEEEEEEEHHHHHHHHH
T ss_pred EEEEecCC----------CeEEEEEEEEEEEecC-CCcCC-----CCchHhheEEEECHHHHHHHHh
Confidence 34332110 1122333444444432 11222 2467999999999999987654
No 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.32 E-value=7.9e-12 Score=107.86 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=69.8
Q ss_pred cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc-c----------eeeeecc--ceEEe----cCCchhh
Q 028086 80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS-A----------EVLAEVP--YWLTY----DFPPEVR 137 (214)
Q Consensus 80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~-~----------~~l~~~~--~~~~~----~~p~~~~ 137 (214)
+|||++|.. .|.|.+||| |++.+||+||++||||+.. . .+..... ....| .+|...
T Consensus 140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~- 217 (292)
T 1q33_A 140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNT- 217 (292)
T ss_dssp EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCC-
T ss_pred EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCC-
Confidence 599999977 489999999 9999999999999999972 0 1110000 11111 111110
Q ss_pred hhhccccCCCccCceEEEEEEEEeCCcc--eeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhccc
Q 028086 138 EKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPH 212 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~--~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~ 212 (214)
.-.......|.+....+.. ...+ ...+|+.+++|++++++.++ .+..+.+++++++....+
T Consensus 218 ---------d~~~~~~~~f~~~~~~g~~~~~~~~----~~~~E~~~~~W~~~del~~L-~~~h~~il~~~~~~~~a~ 280 (292)
T 1q33_A 218 ---------DNAWMETEAVNYHDETGEIMDNLML----EAGDDAGKVKWVDINDKLKL-YASHSQFIKLVAEKRDAH 280 (292)
T ss_dssp ---------SSEEEEEEEEEEEESSSTTTTTCCC----CCCTTCSEEEEEECCTTCCC-STTHHHHHHHHHHHHTCC
T ss_pred ---------cccEEEEEEEEEEeCCCcccccccc----CCCCccceEEEEEcccCccc-CHhHHHHHHHHHHHhcCc
Confidence 0001123344444322210 0111 13458899999999999864 456678888888775443
No 73
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.25 E-value=3.7e-11 Score=100.56 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=42.9
Q ss_pred CccceEEEEEEecC--C--cEEEEeecCC----CCCeecCCC-----CC--------------------HHHHHHHHHHH
Q 028086 65 GYRRNVGICLINSS--K--KIFAASRLDI----PDSWQMPQN-----ED--------------------PKVAALRELKE 111 (214)
Q Consensus 65 ~~~~~v~vvI~~~~--g--~vLL~rR~~~----~g~W~lPgG-----Es--------------------~~eAA~REl~E 111 (214)
.+|++++++++++. | +|||++|... +|.|.|||| |+ +.+||+||++|
T Consensus 6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E 85 (232)
T 3qsj_A 6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE 85 (232)
T ss_dssp CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence 45888888877643 3 8999999765 589999999 44 58999999999
Q ss_pred HhCCC
Q 028086 112 ETGVS 116 (214)
Q Consensus 112 ETGl~ 116 (214)
||||.
T Consensus 86 E~Gl~ 90 (232)
T 3qsj_A 86 EIGWL 90 (232)
T ss_dssp HHSCC
T ss_pred HhCce
Confidence 99997
No 74
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.17 E-value=8.6e-11 Score=102.72 Aligned_cols=103 Identities=11% Similarity=0.178 Sum_probs=68.6
Q ss_pred cceEEEEEEecCCcEEEEeecCCCCCeecCCC---CCHHHHHHHHHHHHh-CCCc--ceeeeeccceEEecCCchhhhhh
Q 028086 67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN---EDPKVAALRELKEET-GVSS--AEVLAEVPYWLTYDFPPEVREKL 140 (214)
Q Consensus 67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG---Es~~eAA~REl~EET-Gl~~--~~~l~~~~~~~~~~~p~~~~~~l 140 (214)
+..|+++| +.+|+|||+ .+ .| |.+||| |+..++|+||++||| |+++ ..+++. |+.+.
T Consensus 183 ~~~vgaii-~~~g~vLL~--~~-~G-W~LPG~~~~~~~~~~a~RE~~EEttGl~v~~~~L~~v------~~~~~------ 245 (321)
T 3rh7_A 183 EIRLGAVL-EQQGAVFLA--GN-ET-LSLPNCTVEGGDPARTLAAYLEQLTGLNVTIGFLYSV------YEDKS------ 245 (321)
T ss_dssp CEEEEEEE-ESSSCEEEB--CS-SE-EBCCEEEESSSCHHHHHHHHHHHHHSSCEEEEEEEEE------EECTT------
T ss_pred cceEEEEE-EECCEEEEe--eC-CC-ccCCcccCCCChhHHHHHHHHHHhcCCEEeeceEEEE------EEcCC------
Confidence 34456555 457899999 32 47 999988 777789999999997 9984 222221 22221
Q ss_pred ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHHHHHHHh
Q 028086 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVYKEVFTV 208 (214)
Q Consensus 141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~~~~l~~ 208 (214)
.++...+|+++..++. ..+++|+++++++.+.. +..+.+++..++.
T Consensus 246 --------~~~~~i~f~~~~~~g~--------------~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e 293 (321)
T 3rh7_A 246 --------DGRQNIVYHALASDGA--------------PRQGRFLRPAELAAAKFSSSATADIINRFVLE 293 (321)
T ss_dssp --------TCCEEEEEEEEECSSC--------------CSSSEEECHHHHTTCEESSHHHHHHHHHHHHT
T ss_pred --------CceEEEEEEEEeCCCC--------------eeeeEEECHHHCCCcccCCHHHHHHHHHHHHH
Confidence 2344567777775431 24689999999987643 5566777766654
No 75
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.09 E-value=6e-11 Score=98.18 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=57.6
Q ss_pred cEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCCcce-eeeeccceEEecCCchhhhhhccccCCCccCce
Q 028086 80 KIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVSSAE-VLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQA 152 (214)
Q Consensus 80 ~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~~~~-~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~ 152 (214)
++||+.|. ++.|++||| | |+++||+||++||||+.... .+........+ +. ......
T Consensus 66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~--~~------------~~~~~~ 129 (217)
T 2xsq_A 66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSH--VG------------SGPRVV 129 (217)
T ss_dssp EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEE--EC------------SSSSEE
T ss_pred cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeec--CC------------CCCeEE
Confidence 56776665 489999999 8 99999999999999998431 11111111111 11 011335
Q ss_pred EEEEEEEEeCCcce-eecc--CCCCCcCceeeEEEeChhHHh
Q 028086 153 QKWFLLKFTGKEEE-INLL--GDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 153 ~~~fl~~~~~~~~~-i~l~--~~~~~~~E~~~~~Wv~~~el~ 191 (214)
.++|++.+..+... +... ....+.+|..++.|+|++++.
T Consensus 130 ~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 130 AHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred EEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 56677766532110 0000 001134588999999999986
No 76
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.59 E-value=8.7e-08 Score=78.28 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=40.0
Q ss_pred CccceEEEEE-EecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086 65 GYRRNVGICL-INSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS 116 (214)
Q Consensus 65 ~~~~~v~vvI-~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~ 116 (214)
+.|+.|.++| +++++ +|||+|+.. +.|.+||| |+.++|+.||+.||+|+.
T Consensus 56 g~R~sV~avil~~~~~~phVLLlq~~~--~~f~LPGGkle~gE~~~eaL~REL~EELg~~ 113 (208)
T 3bho_A 56 GMRRTVEGVLIVHEHRLPHVLLLQLGT--TFFKLPGGELNPGEDEVEGLKRLMTEILGRQ 113 (208)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEET--TEEECSEEECCTTCCHHHHHHHHHHHHHCCC
T ss_pred CCceEEEEEEEEcCCCCcEEEEEEcCC--CcEECCCcccCCCCCHHHHHHHHHHHHhCCC
Confidence 3466665555 45555 799999853 79999999 999999999999999953
No 77
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.45 E-value=8.1e-08 Score=77.94 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=62.0
Q ss_pred CCccceEEEEEEecC-----C------cEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCC-c--ceeeee
Q 028086 64 EGYRRNVGICLINSS-----K------KIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVS-S--AEVLAE 123 (214)
Q Consensus 64 ~~~~~~v~vvI~~~~-----g------~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~-~--~~~l~~ 123 (214)
.++|.++.+++.-++ | .|||+.|.+ |.|+|||| | |+++|+.||+.||+|+. + .+.+.
T Consensus 18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~~--G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~- 94 (214)
T 3kvh_A 18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFD--GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLS- 94 (214)
T ss_dssp TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEETT--SCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEE-
T ss_pred cCccEeeEEEEEcCCccccccccchhheEEEeeeeC--CEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEE-
Confidence 467888888776443 2 367777775 89999999 7 99999999999999973 2 22221
Q ss_pred ccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcce----eeccCCCCCcCceeeEEEeChhHHh
Q 028086 124 VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE----INLLGDKSEKPEFGEWKWMSPEQIL 191 (214)
Q Consensus 124 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~----i~l~~~~~~~~E~~~~~Wv~~~el~ 191 (214)
...++||. ....++|.++...++.. ..+. ..+-.-|+....-||+=.+.
T Consensus 95 ---s~~~~yp~---------------~V~LHfY~crl~~Ge~~~lE~~A~~-A~d~G~EvlGlvRVPlytl~ 147 (214)
T 3kvh_A 95 ---SHLTEGPH---------------RVVAHLYARQLTLEQLHAVEISAVH-SRDHGLEVLGLVRVPLYTQK 147 (214)
T ss_dssp ---EEEC-------------------CEEEEEEEEECCHHHHHHHHHHHHT-STTBTTTEEEEEEECCCBCT
T ss_pred ---EEeccCCC---------------EEEEEEEEEEeeCCccchhhhcccC-CcccCceecceEEeeeEEec
Confidence 22334431 22457777776533211 0111 01234577788888875544
No 78
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=24.24 E-value=1.7e+02 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=32.5
Q ss_pred eEEEEEEecCCcEEEEeecCCCCCeecCCC---CCH------HHHHHHHHHHHhCCCccee
Q 028086 69 NVGICLINSSKKIFAASRLDIPDSWQMPQN---EDP------KVAALRELKEETGVSSAEV 120 (214)
Q Consensus 69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG---Es~------~eAA~REl~EETGl~~~~~ 120 (214)
++-++|+|.+|+++-..+...+ .+....| .++ ...++|++.++.|+...++
T Consensus 15 s~Ka~l~d~~G~~va~~~~~~~-~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I 74 (526)
T 3ezw_A 15 SSRAVVMDHDANIISVSQREFE-QIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQI 74 (526)
T ss_dssp EEEEEEECTTCCEEEEEEEECC-CBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred ceeeeEEcCCCCEEEEEEEecC-cccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 4567889999998876655432 2222234 233 2357899999999985443
Done!