RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028087
(214 letters)
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 415 bits (1068), Expect = e-150
Identities = 170/214 (79%), Positives = 184/214 (85%)
Query: 1 MLVGHPFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQS 60
MLV HPFVLL DRYRRK HFI K+WATL+ SPF K+E+EGLENLPS D PAVYVSNHQS
Sbjct: 1 MLVQHPFVLLFDRYRRKAQHFINKVWATLSTSPFYKIEVEGLENLPSPDEPAVYVSNHQS 60
Query: 61 FLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIK 120
FLDIYTL LG+ FKFISKT IFL P+IGWAM M G IPLKRMD RSQLECLKRCMEL+K
Sbjct: 61 FLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECLKRCMELLK 120
Query: 121 KGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEG 180
KGASV FFPEGTRSKDGKL AFKKGAFSVAAKTGVPVVPITLVGTGKIMP+G EG+LN G
Sbjct: 121 KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITLVGTGKIMPNGKEGILNPG 180
Query: 181 TIKVVIHKPIQGHDAGELCNEARNSIADALGLQS 214
++KVVIH PI+G DA ELCNEAR IA++L S
Sbjct: 181 SVKVVIHPPIEGSDADELCNEARKVIAESLVQNS 214
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 181 bits (461), Expect = 3e-58
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 7/189 (3%)
Query: 23 AKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLT-LGKSFKFISKTG 81
+L L +++ +EGLENLP P + V+NHQS+LD L L + +F++K
Sbjct: 1 LRLLLRLL---GVRVRVEGLENLPP-KGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKE 56
Query: 82 IFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGA 141
+F P +GW + ++G IP+ R + RS E L+ +E +K+G SV FPEGTRS+DG+L
Sbjct: 57 LFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLP 116
Query: 142 FKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPIQGHDAGELCNE 201
FK GAF +A + GVP+VP+ + GT +P G + + G + V I +PI + EL E
Sbjct: 117 FKSGAFRLAKEAGVPIVPVAISGTWGSLPKG-KKLPRPGRVTVRIGEPIP-PEGLELAEE 174
Query: 202 ARNSIADAL 210
R + + +
Sbjct: 175 DRKELREKV 183
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 124 bits (313), Expect = 8e-37
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 52 AVYVSNHQSFLDIYTLLTL----GKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRS 107
A+ V+NHQSFLD L L +F++K +F P++GW + ++G I + R + R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 108 QLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGT 165
L+ +EL+K+G + FPEGTRS+ GKL FKKGA +A + GVP+VP+ + GT
Sbjct: 61 ARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRGT 118
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 128 bits (323), Expect = 1e-36
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 6 PFVLLLDRYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIY 65
L R++ F+ L L L++E+EGLENLP PA+ V+NHQSFLD
Sbjct: 24 ALFRLRRPVLRRWLRFLVLLLLLLF---GLRVEVEGLENLPK-GGPALVVANHQSFLDPL 79
Query: 66 TL---LTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKG 122
L L +F++K +F P++GW + ++G IP+ R ++ L G
Sbjct: 80 LLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDR-ENPDDETLRAAVARLKAGG 138
Query: 123 ASVCFFPEGTRSKDG-KLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGT 181
S+ FPEGTRS+ G +L FK+GA +A + GVP+VP+ +VG ++ PS +G
Sbjct: 139 RSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIVGAEELFPSLK-----KGK 193
Query: 182 IKVVIHKPI 190
+KV I PI
Sbjct: 194 VKVRIGPPI 202
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 123 bits (310), Expect = 4e-36
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 36 KLEIEGLENLPSSDTPAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFLFPVIGWA 91
++ + GLENLP PA+ V+NHQS+LD L G+ F++K + P++GW
Sbjct: 1 RVRVHGLENLPRGG-PAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWL 59
Query: 92 MSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAA 151
M ++G I + R +++ L+ +EL+++G V FPEGTRS+ G+L FKKGAF +A
Sbjct: 60 MRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRLAR 119
Query: 152 KTGVPVVPITLV 163
+ GVP+VP+ +
Sbjct: 120 EAGVPIVPVAIS 131
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 119 bits (300), Expect = 1e-34
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 35 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLL-TLGKSFKFISKTGIFLFPVIGWAMS 93
LK+E+ G ENLP+ +P + V+NHQS LD TL FI+K + P G +
Sbjct: 2 LKVEVVGPENLPA-KSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLW 60
Query: 94 MMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKT 153
+ G I + R + R+ LK +E++K+G S+ FPEGTRS+ + FKKGAF +A K
Sbjct: 61 LTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKA 120
Query: 154 GVPVVPITLV 163
GVP++P+ L
Sbjct: 121 GVPILPVVLS 130
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 94.6 bits (236), Expect = 2e-22
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 16 RKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLD-IYTLLTLGKSF 74
+ + L + +L +EG EN+P+ A+ + NH S++D +
Sbjct: 408 LLLPDSLLRFLLLLLMHTRYRLRVEGRENIPA-KGGALLLGNHVSWIDWALLQAASPRPI 466
Query: 75 KFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRS 134
+F+ + I+ + W + GVIP+ S+ LE ++ + + G VC FPEG +
Sbjct: 467 RFVMERSIYEKWYLKWFFKLFGVIPISSGGSKESLEFIR---KALDDGEVVCIFPEGAIT 523
Query: 135 KDGKLGAFKKGAFSVAAKTGVPVVPITLVG 164
++G+L FK+G + T VP++P + G
Sbjct: 524 RNGQLNEFKRGFELIVKGTDVPIIPFYIRG 553
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 83.5 bits (207), Expect = 6e-20
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 34 FLKLEIEGLENLPSSDTPAVYVSNHQ-SFLDIYTL-LTLGKSFKFISKTGIFLFPVIGWA 91
F ++ + G EN+P D P +++ NH + +D L TL + +F++K +F P+IGW
Sbjct: 13 FRRITVVGRENVPK-DGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWL 71
Query: 92 MSMMGVIPLKRM-DSR-------SQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFK 143
+ G IP+ R D S E +K G ++ FPEG +L K
Sbjct: 72 LESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDRPRLLPLK 131
Query: 144 KGA------FSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPIQ 191
GA A + V +VP+ L K + V KPI
Sbjct: 132 AGAARMALEALEAGQKDVKIVPVGLNYEDKSRF--------RSRVLVEFGKPIS 177
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 76.9 bits (190), Expect = 2e-17
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 29 LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVI 88
L F +++ G + P + P + V+NH SF+D +L ++K + P I
Sbjct: 5 LFAFGFYVIKVHGKPDPP--EAPRIIVANHTSFIDPL-ILFSDLFPSIVAKKELGKLPFI 61
Query: 89 GWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGAS------VCFFPEGTRSKDGKLGAF 142
G + +G I + R + + + + ++ IK+ A+ + FPEGT + L F
Sbjct: 62 GTILRALGCIFVDRSEPKDRKKVVEE----IKERATDPNWPPILIFPEGTTTNGKALIMF 117
Query: 143 KKGAFSVAAKTGVPVVPITL 162
KKGAF GVPV P+ +
Sbjct: 118 KKGAFE----PGVPVQPVAI 133
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 73.6 bits (181), Expect = 2e-16
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 34 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTL-LTLGKSFKF-----ISKTGIFLFPV 87
F++LE++G P P ++VSNH S+ D L L L + + + + + +P
Sbjct: 11 FVRLEVKGPPPPPG-GGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPF 69
Query: 88 IGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKK-GASVCFFPEGTRSK-DGKLGAFKKG 145
+G + R RS + LK L+ K G+ V FPEGTR++ D + FK G
Sbjct: 70 FTR----LGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQFKPG 125
Query: 146 AFSVAAKTGVPVVPITL 162
+A K GVP+VP+ L
Sbjct: 126 VAHLAEKAGVPIVPVAL 142
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 68.8 bits (169), Expect = 1e-13
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 34 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLT-LGKSFKFISKTGI--------FL 84
F ++E++GLENL + AV +NH SFLD L L + F T I FL
Sbjct: 438 FYRVEVKGLENLQKAGKKAVIAANHVSFLDGPLLAAYLPEEPTFAIDTDIAKAWWVKPFL 497
Query: 85 FPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKK 144
+ V P M +R+ ++ ++KG + FPEG + G L
Sbjct: 498 -----KLAKALPVDPTNPMATRT-------LIKEVQKGEKLVIFPEGRITVTGSLMKIYD 545
Query: 145 GAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEG---TIKVVIHKPIQGHDAGELCNE 201
G +A K G VVP+ + G S ++ + + V I P++ EL
Sbjct: 546 GPGMIADKAGAMVVPVRIDGLQFTHFSRLKNQVRRKWFPKVTVTILPPVKLAVDPELKGR 605
Query: 202 ARNSIADA 209
R S A A
Sbjct: 606 ERRSAAGA 613
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 63.4 bits (155), Expect = 1e-12
Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 33/184 (17%)
Query: 35 LKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSF------KFISKTGIFLFPVI 88
+K+ + G + A+ +SNH+S +D L L F K + K + P+
Sbjct: 10 VKVVVYG-DEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLG 68
Query: 89 GWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGA---SVCFFPEGTR---SKDGKLGAF 142
GW + I LKR + +KR ++ +K + FPEGTR K + F
Sbjct: 69 GWGWQLGEFIFLKR-KWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEKKERSQEF 127
Query: 143 KK---------------GAFSVA----AKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIK 183
+ F V +T+ PS +L +
Sbjct: 128 AEKNGLPPLKHVLLPRTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQRLLLGGKPRE 187
Query: 184 VVIH 187
V +H
Sbjct: 188 VHVH 191
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 59.2 bits (144), Expect = 6e-11
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 34 FLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKF-----ISKTGIFLFPVI 88
F E+ GLEN+P + PA+ V H LL F + FLFP+
Sbjct: 5 FRVYEVRGLENIPD-EGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLP 63
Query: 89 GWAM--SMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTR----SKDGKLGA- 141
G +G +P R + C+ L+++G V FP G R SK +
Sbjct: 64 GLRDLLRRLGAVPGSREN----------CVRLLREGELVLIFPGGAREALKSKREEYYLL 113
Query: 142 --FKKGAFSVAAKTGVPVVPITLVG 164
+KG +A + G P+VP+ G
Sbjct: 114 WKKRKGFARLALRAGAPIVPVFTFG 138
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 54.9 bits (133), Expect = 1e-09
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 58 HQSFLD-IYTLLT---LGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLK 113
H S D + LL LG F+ K +F P+ G M +G IP+ R + +E +
Sbjct: 29 HTSNWDFVLGLLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIPVDRSRAGGLVEQVV 87
Query: 114 RCMELIKKGA--SVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITL------VGT 165
E ++ + PEGTRSK K +K G + +A GVP++ + L VG
Sbjct: 88 ---EEFRRREEFVLAIAPEGTRSKVDK---WKTGFYHIARGAGVPILLVYLDYKRKTVGI 141
Query: 166 G-KIMPSG 172
G PSG
Sbjct: 142 GPLFEPSG 149
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 54.5 bits (132), Expect = 3e-09
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 36 KLEIEGLENLPSSDTPAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFLFPVIGWA 91
+ ++E L P V + H+S+LD + L +LG I+ P++G
Sbjct: 8 EGQLERLRKAAQEGHPVVLLPTHRSYLDFLLLSFILFSLGLPLPHIAAGENLNIPILGTL 67
Query: 92 MSMMGVIPLKRMDSRSQL--ECLKRCM-ELIKKGASVCFFPEGTRSKDGKLGAFKKGAFS 148
+ +G ++R + L L+ + EL+K G + FF EGTRS+ GKL K G S
Sbjct: 68 LRRLGAFFIRRSFGKDPLYRAVLQEYVQELLKNGQPLEFFIEGTRSRTGKLLPPKLGLLS 127
Query: 149 VA----AKTGVP---VVPITL 162
V K VP +VP+++
Sbjct: 128 VVVEAYLKGSVPDVLIVPVSI 148
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 54.6 bits (131), Expect = 4e-09
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 52 AVYVSNHQSFLDIYTLLTLGKSFKF-ISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLE 110
A+Y++NHQ+ D+ T + + + K + P G + G + + R +
Sbjct: 67 AIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNRTKAHG 126
Query: 111 CLKRCMELIKKG-ASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIM 169
+ + KK S+ FPEGTRS+ L FK GAF A GVP++P+ + T +
Sbjct: 127 TIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKI 186
Query: 170 PSGMEGMLNEGTIKVVIHKPI 190
L+ G + V + PI
Sbjct: 187 NL---NRLHNGLVIVEMLPPI 204
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 51.5 bits (124), Expect = 4e-08
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 35 LKLEIEGLENLPSSDTPAVYVSNHQ-SFLD----IYTLLTLGKSFKFISKTGIFLFPVIG 89
L++++ GLEN+P D P V V+NH LD L ++ + ++ + P +
Sbjct: 8 LEVDVSGLENIPK-DGPVVIVANHPFGILDGLILADLLGSVRPDVRILANQLLSKIPEL- 65
Query: 90 WAMSMMGVIPLKRMDSRSQ-LECLKRCMELIKKGASVCFFPEGT--RSKDGKLGAF---- 142
+ V PL+ + ++ E L+ + +K G ++ FP G +
Sbjct: 66 -RDLFIPVDPLEGRAALAKNRESLREALRHLKNGGALIIFPAGRVSTASPPFGRVSDRPW 124
Query: 143 KKGAFSVAAKTGVPVVPI 160
+A K PVVP+
Sbjct: 125 NPFVARLARKAKAPVVPV 142
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 45.2 bits (108), Expect = 7e-06
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 20 HFIAKLWAT-----LTVSPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIYTLLTLGKS- 73
+FIA+ W + L + P + ++EGLE L S + +SNHQS++DI L +
Sbjct: 53 NFIAEAWISINNVILRLLPRTQWDVEGLEGL-SKKGWYLVISNHQSWVDILVLQYVFNRR 111
Query: 74 ---FKFISKTGIFLFPVIG---WAMSMMGVIPLKRMDSRSQLE------------CLKRC 115
KF K + P +G WA+ P + S++ L + C
Sbjct: 112 IPMLKFFLKQELIWVPFLGLAWWALDF----PFMKRYSKAYLAKNPELKGKDLETTRRAC 167
Query: 116 MELIKKGASVCFFPEGTR 133
+ + ++ F EGTR
Sbjct: 168 EKFKRMPTTIVNFVEGTR 185
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 42.0 bits (99), Expect = 1e-04
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 57 NHQSFLDIYTLLTLGKSFK--FISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKR 114
NH SFLD LL L + F T I + W + +PL D + +K
Sbjct: 35 NHVSFLD-GILLALFLPVRPVFAVYTSISQQWYMRWLKPYIDFVPL---DPTKPM-AIKH 89
Query: 115 CMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLVG 164
+ L+++G V FPEG + G L GA VAAK+G V+P+ + G
Sbjct: 90 LVRLVEQGRPVVIFPEGRITVTGSLMKIYDGAGFVAAKSGATVIPVRIEG 139
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 41.7 bits (98), Expect = 1e-04
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 46 PSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGW-------AMSMMGVI 98
PS V+V+NH S +D + +L F I + P GW + +G I
Sbjct: 159 PSRRPKQVFVANHTSMID-FIVLEQMTPFAVIMQ----KHP--GWVGFLQNTILESVGCI 211
Query: 99 PLKRMDSRSQLECLKRCMELIKKGAS--VCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVP 156
R +++ + K+ + ++ + FPEGT + FKKGAF + G
Sbjct: 212 WFNRTEAKDREVVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFEL----GCT 267
Query: 157 VVPI 160
V PI
Sbjct: 268 VCPI 271
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 41.0 bits (96), Expect = 2e-04
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 48 SDTPAVYVSNHQSFLDIYTLLTLGKSFKFIS-----KTGIFLFPVIGWAMSMMGVIPLK- 101
S YV NH SF D+Y + L ++ K+ + P+ G +G P+
Sbjct: 127 SRHGCAYVGNHTSFWDVYAFIGLTPFRHLLNTRTLMKSSLRKIPIFGGVFDRVGHFPVHF 186
Query: 102 --------RMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGK-LGAFKKGAFSVAAK 152
+D Q + + ++ G S+ FFPEG +K + L F+ G F+ K
Sbjct: 187 KSDSDGNFEVDKEKQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQVLQTFRYGTFATIIK 246
Query: 153 TGVPVVPITLVGTGKIMPSGM 173
+ V + VG+ K P M
Sbjct: 247 HRMEVYYMVSVGSEKTWPWWM 267
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 40.3 bits (95), Expect = 2e-04
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 35 LKLEIEGLEN---LPSSDTPAVYVSNHQSFLDIYTLLTLGKSFKFI-----SKTGIFLFP 86
L+ + G E+ L + P + H L + + SK G +
Sbjct: 8 LRWRVIGDESADALIAQGEPVILAFWHGRLL--LMPYLFRRRKRIAALISRSKDGEIIAR 65
Query: 87 VIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGA 146
V + +G+ ++ SR L+ + +K G ++ P+G R G K G
Sbjct: 66 V----LERLGIRVVRGSSSRGGAAALREMLRALKDGYNIAITPDGPR---GPRYKVKPGV 118
Query: 147 FSVAAKTGVPVVPIT 161
+A K+G P+VP+
Sbjct: 119 ILLARKSGAPIVPVA 133
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 39.3 bits (92), Expect = 0.001
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 51 PAVYVSNHQSFLDI----YTLLTLGKSFKFISKTGIFL-FPVIGWAMSMMGVIPLKRMDS 105
VYV H+S +D Y L G I+ GI L F +G G ++R
Sbjct: 297 EIVYVPCHRSHIDYLLLSYVLYHNGLVPPHIA-AGINLNFWPMGPIFRRGGAFFIRRTFK 355
Query: 106 RSQL------ECLKRCMELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGV--PV 157
+ L E L EL +G S+ +F EG RS+ G+L K G S+ + +
Sbjct: 356 GNPLYSTVFREYLG---ELFSRGYSLEYFIEGGRSRTGRLLPPKTGMLSMTLQAMLRGRT 412
Query: 158 VPITLVGT 165
PI LV
Sbjct: 413 RPILLVPV 420
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 36.3 bits (84), Expect = 0.007
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 40/157 (25%)
Query: 21 FIAKLWATLTV---SPFLKLEIEGLENLPSSDTPAVYVSNHQSFLDIY------------ 65
++ WA + V + E+ G E+ A+ +SNH+S +D
Sbjct: 59 WLVDWWAGVKVQLYADEETFELMGKEH-------ALVISNHRSDIDWLVGWILAQRSGCL 111
Query: 66 --TLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCMELIKKGA 123
L + KS KF+ PVIGW+M + L+R ++ + LK + +K
Sbjct: 112 GSALAVMKKSSKFL--------PVIGWSMWFSEYVFLERSWAKDE-NTLKSGFQRLKDFP 162
Query: 124 S---VCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPV 157
+ F EGTR KL A A AA G+PV
Sbjct: 163 RPFWLALFVEGTRFTQAKLLA----AQEYAASRGLPV 195
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 34.3 bits (79), Expect = 0.031
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 13 RYRRKFHHFIAKLWATLTVSPFLKLEIEGLENLPSSDT-PA----VYVSNHQSFLDIYTL 67
Y RK F W L + PFL +I + + S D P + ++NH++ +D L
Sbjct: 52 HYSRKATSFFFGSW--LALWPFLFEKINKTKVVFSGDKVPPEERVLLIANHRTEVDWMYL 109
Query: 68 --LTLGKS----FKFISKTGIFLFPVIGWAMSMMGVIPLKR---MDS---RSQLECLKRC 115
L L K K++ K+ + PV GWA + IP++R +D R L K
Sbjct: 110 WDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDP 169
Query: 116 MELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPV 157
+ + + FPEGT + K +K AA+ G+P+
Sbjct: 170 RDPL----WLALFPEGTDYTEAKCQRSQK----FAAEHGLPI 203
>gnl|CDD|153246 cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LABLAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as lipid A
biosynthesis lauroyl/myristoyl (LABLAT, HtrB)
acyltransferases and similar proteins.
Length = 192
Score = 33.0 bits (76), Expect = 0.064
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 47/177 (26%)
Query: 36 KLEIEGLENLP---SSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLF-----PV 87
++E EGLE+L + + ++ H ++ G + + ++ P+
Sbjct: 3 RVEREGLEHLEAALAKGKGVILLTAHFGNWEL-----AGLALALLGYPVTVVYRPLKNPL 57
Query: 88 IGWAMSMMGVIPLKRMDSRSQLEC------LKRCMELIKKGASVCFFP-EGTRSKD---- 136
+ + R R L+ + +KKG V P + K
Sbjct: 58 LDRLI--------TRGRERFGARLIPRGGGLRELIRALKKGEIVGILPDQDPGRKGGVFV 109
Query: 137 ---GKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPI 190
G+ A G +A KTG PVVP L G ++ P+
Sbjct: 110 PFFGRPAATPTGPARLALKTGAPVVPAFAY------------RLPGGGYRIEFEPPL 154
>gnl|CDD|234317 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members
of this protein family are PlsB, glycerol-3-phosphate
O-acyltransferase, present in E. coli and numerous
related species. In many bacteria, PlsB is not found,
and appears to be replaced by a two enzyme system for
1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
system [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 799
Score = 31.8 bits (73), Expect = 0.27
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 117 ELIKKGASVCFFPEGTRSKDGKLGAFKKG--AFSVAAKTGVPVVPITLV 163
EL KG SV +F EG RS+ G+L K G A ++ A PITLV
Sbjct: 366 ELFAKGYSVEYFVEGGRSRTGRLLPPKTGMLAMTLQAMLRGIRRPITLV 414
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 30.6 bits (70), Expect = 0.73
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 20/58 (34%)
Query: 117 ELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGV-----------PVVPITLV 163
EL +G SV +F EG RS+ G+L + KTG+ PITLV
Sbjct: 376 ELFARGYSVEYFVEGGRSRTGRL---------LQPKTGMLAMTLQAMLRGSRRPITLV 424
>gnl|CDD|225032 COG2121, COG2121, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 214
Score = 27.7 bits (62), Expect = 3.8
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 119 IKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPI 160
+K+G S+ P+G + G + G ++A K+GVP++P+
Sbjct: 114 LKQGKSIAITPDGPK---GPVHKIGDGIIALAQKSGVPIIPV 152
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 27.4 bits (62), Expect = 4.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 136 DGKLGAFKKGAFSVAAKTGVPVVPITLVGTGKIMP 170
K GA A S+AA+TG +PI +GTG+ +P
Sbjct: 154 TAKGGA----ALSIAAETG---LPIKFIGTGEKVP 181
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 27.2 bits (60), Expect = 6.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 74 FKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLE 110
KF SK+ ++ F V+ W + +G +P +R ++ +E
Sbjct: 176 SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVE 212
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing
protein (DUF2360). This is the conserved 140 amino
acid region of a family of proteins conserved from
nematodes to humans. One C. elegans member is annotated
as a Daf-16-dependent longevity protein 1 but this
could not be confirmed. The function is unknown.
Length = 147
Score = 26.6 bits (59), Expect = 6.4
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 36 KLE-IEGLENLPSSDTPAVYVSNHQS 60
KL I GLE++ TP S +
Sbjct: 43 KLASIPGLEDVTVQTTPPPPASAITN 68
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 27.2 bits (61), Expect = 6.6
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 150 AAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKP--------IQGHDAGELCNE 201
A + G+ + +G +K+V+ K I G A EL NE
Sbjct: 365 AKEAGIDYKVGKFPFAA--NGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINE 422
Query: 202 A 202
Sbjct: 423 I 423
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 26.8 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 74 FKFISKTGIFLFPVIGWAMSMMGVIPLKRM---------DSRSQLECLKRC 115
+KF SK+ ++ F V+ W G P K M +S ++EC +RC
Sbjct: 173 YKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRC 223
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 27.0 bits (60), Expect = 7.9
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 69 TLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCM 116
T+ + KTG FPV+ +M ++GV+ ++ + + +++ M
Sbjct: 208 TVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEKVM 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,931,512
Number of extensions: 1019763
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1054
Number of HSP's successfully gapped: 51
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.4 bits)