RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028087
         (214 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 84.3 bits (208), Expect = 5e-20
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 44/214 (20%)

Query: 40  EGLENLPSSDTPAVYVSNHQSFLD---IYTLLT-----LGKSFKFISKTGIFLFPVIGWA 91
           +  E L       V +SNHQ+  D   I  LL      + ++  F++   +   P+    
Sbjct: 121 DIEEKLQQGH-NVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPF 179

Query: 92  MSMMGVIP------------LKRMDSRSQLECLKRCMELIKKG-ASVCFFPEGTRS---- 134
                +I             L     ++    LK    L++ G   +   P G R     
Sbjct: 180 SIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDP 239

Query: 135 KDGKL--GAFKKGA----FSVAAKTGVP--VVPITLVGTGKIMPS-------GMEGMLNE 179
             G+     F   +      +   + VP  + P+ L+    + P        G + ++  
Sbjct: 240 STGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAF 299

Query: 180 GTIKVVIHKPIQGHD---AGELCNEARNSIADAL 210
               + +   I   +     +   E R + + AL
Sbjct: 300 NGAGLSVAPEISFEEIAATHKNPEEVREAYSKAL 333


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 10/82 (12%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 47  SSDTPAVYVSNHQSFLDIYTLLTLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDS- 105
           +SDTP  Y+     +  ++ +     ++K +S +G        + + +      +     
Sbjct: 2   ASDTPGFYMDKLNKYRQMHGVAI---TYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRS 58

Query: 106 --RSQLECLKRCMELIKKGASV 125
              ++    K  ++++     V
Sbjct: 59  KQEARNAAAKLAVDILDNENKV 80


>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
           subdomain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 267

 Score = 24.7 bits (52), Expect = 9.2
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 143 KKGAFSVAAKTGVPVVPITLVGTGKIMPSGMEGMLNEGTIKVVIHKPIQGHDAGELCNEA 202
           K  +  VA    VP +P +  G   +      G++   ++   I++        +   +A
Sbjct: 3   KISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLV---SVDDDIYQKGCCTSPEDGLQKA 59

Query: 203 R 203
           +
Sbjct: 60  K 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,315
Number of extensions: 35756
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 4
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)