Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>028089
MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKK
LSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGVDG
SPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPA
YKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028089
        (214 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956229 - symbol:AT1G73885 "AT1G73885" speci...   351  4.7e-32   1


>TAIR|locus:504956229 [details] [associations]
            symbol:AT1G73885 "AT1G73885" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] EMBL:CP002684 GO:GO:0009535 IPI:IPI00521794
            RefSeq:NP_683492.1 UniGene:At.45164 PRIDE:F4HS13
            EnsemblPlants:AT1G73885.1 GeneID:843726 KEGG:ath:AT1G73885
            OMA:GARIRCN Uniprot:F4HS13
        Length = 192

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 83/170 (48%), Positives = 106/170 (62%)

Query:    45 TRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNI 104
             +R PF T  +V+      SRT     +   GN G      E+   Q     E G D T +
Sbjct:    23 SRNPFSTFRLVNFPNP--SRT----EQQEEGNEGF---DGENPPSQIVINDEDG-DRTVV 72

Query:   105 NNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIA 164
             N  +F   G         + +LPGLEPD +EG +W   GFF+QYLWAFGI+FAL++ G+A
Sbjct:    73 NT-RFR--GDPKDAPKFAIKDLPGLEPDPFEGEKWDGLGFFVQYLWAFGILFALISGGLA 129

Query:   165 VATYNEGATDFKETPAYKESVQSRDLLEGPDASNS-DVFESNPTEVAPSL 213
               TYNEGATDFKETP YKE++QSRDLL+  ++SNS DVFESNPTEVAP++
Sbjct:   130 AGTYNEGATDFKETPVYKEAIQSRDLLDEAESSNSEDVFESNPTEVAPTI 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       214   0.00085  112 3  11 23  0.43    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.14u 0.16s 21.30t   Elapsed:  00:00:01
  Total cpu time:  21.14u 0.16s 21.30t   Elapsed:  00:00:01
  Start:  Fri May 10 02:10:20 2013   End:  Fri May 10 02:10:21 2013

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