Query 028089
Match_columns 214
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iqo_A Hypothetical protein MT 19.0 88 0.003 23.7 3.1 36 159-194 3-38 (88)
2 2yuf_A NGFI-A-binding protein 16.0 43 0.0015 27.3 0.8 17 60-76 70-86 (142)
3 1bts_A BAND 3 anion transport 14.7 79 0.0027 18.9 1.6 13 150-162 11-23 (26)
4 2aby_A Hypothetical protein TA 12.4 34 0.0012 27.9 -0.7 15 129-143 131-145 (146)
5 3hxi_C Eukaryotic translation 12.2 77 0.0026 18.6 1.0 8 13-20 2-9 (21)
6 2f95_B Sensory rhodopsin II tr 10.3 1.3E+02 0.0043 20.8 1.7 17 148-164 60-76 (163)
7 4ase_A Vascular endothelial gr 8.7 2E+02 0.0069 24.2 2.7 42 149-196 270-312 (353)
8 4f9c_A Cell division cycle 7-r 8.3 1.5E+02 0.0051 24.8 1.7 15 149-163 230-244 (361)
9 3arc_T Photosystem II reaction 7.4 4.8E+02 0.016 16.5 3.4 6 175-180 23-28 (32)
10 3owq_A LIN1025 protein; struct 6.5 1.1E+02 0.0037 26.6 0.0 15 148-162 16-30 (321)
No 1
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=19.05 E-value=88 Score=23.66 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.5
Q ss_pred hhceeEEEeecCCccCCCCChhhhhhhhhccccCCC
Q 028089 159 VACGIAVATYNEGATDFKETPAYKESVQSRDLLEGP 194 (214)
Q Consensus 159 iacg~a~~TYnegatdFretp~~kesvqsqe~~eep 194 (214)
||.++-+++|++=+.++...-.||-+++-++|-+.+
T Consensus 3 vAtL~gI~~~keL~ee~~~fv~~kA~~ekreLkddd 38 (88)
T 1iqo_A 3 IATLKGIFTLKDLPEEFRPFVDYKAGLEKKKLSDDD 38 (88)
T ss_dssp CCCEEEEECSTTCSTTTCCSTHHHHTTTTCCCSSCC
T ss_pred eEEEEEEEEhhhcchhHhhHhhhhhhhhcccCCCCC
Confidence 678888999999999999999999999988875443
No 2
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.01 E-value=43 Score=27.34 Aligned_cols=17 Identities=53% Similarity=0.798 Sum_probs=12.9
Q ss_pred cccccccccCcCCcCCC
Q 028089 60 KLSSRTGRFDSKNRRGN 76 (214)
Q Consensus 60 k~ssrtgRfdsK~RR~~ 76 (214)
|-|.=-||||+|+|-+.
T Consensus 70 KYSaIYGRFDsKRr~~K 86 (142)
T 2yuf_A 70 KYSAIYGRFDSKRKDGK 86 (142)
T ss_dssp HHCCSSSCSCCCTTCCC
T ss_pred HHHHHHcccccccCCCC
Confidence 44556799999988766
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=14.69 E-value=79 Score=18.85 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhce
Q 028089 150 WAFGIVFALVACG 162 (214)
Q Consensus 150 wafGV~faliacg 162 (214)
.+-|++|+|+++.
T Consensus 11 ai~Gi~f~lf~gQ 23 (26)
T 1bts_A 11 AVQGILFALLGAX 23 (26)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcc
Confidence 5679999988763
No 4
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum}
Probab=12.41 E-value=34 Score=27.89 Aligned_cols=15 Identities=47% Similarity=1.035 Sum_probs=12.4
Q ss_pred CCCCCCCCCCcchhH
Q 028089 129 LEPDFWEGPQWGAFG 143 (214)
Q Consensus 129 ~ePDFWEGpQWd~lG 143 (214)
.|-|.||.|-|+..|
T Consensus 131 EEYDLWeDPiW~YI~ 145 (146)
T 2aby_A 131 EEYDLWEDPIWQYIG 145 (146)
T ss_dssp SSSCSCCSHHHHCC-
T ss_pred hhhhhhhhhHHHhcc
Confidence 468999999999877
No 5
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=12.25 E-value=77 Score=18.63 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=6.7
Q ss_pred CcceEEec
Q 028089 13 SGSRILYT 20 (214)
Q Consensus 13 gG~ri~~t 20 (214)
||.||+|.
T Consensus 2 GGTrIiYd 9 (21)
T 3hxi_C 2 GSGRIIYD 9 (26)
T ss_pred CceEEEEe
Confidence 78899985
No 6
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=10.30 E-value=1.3e+02 Score=20.80 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhceeE
Q 028089 148 YLWAFGIVFALVACGIA 164 (214)
Q Consensus 148 ylwafGV~faliacg~a 164 (214)
+++++++++.+++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~ 76 (163)
T 2f95_B 60 AILGLIILLGINLGLVA 76 (163)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 7
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=8.71 E-value=2e+02 Score=24.18 Aligned_cols=42 Identities=17% Similarity=0.449 Sum_probs=24.2
Q ss_pred HHHHHHHHH-HhhceeEEEeecCCccCCCCChhhhhhhhhccccCCCCC
Q 028089 149 LWAFGIVFA-LVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPDA 196 (214)
Q Consensus 149 lwafGV~fa-liacg~a~~TYnegatdFretp~~kesvqsqe~~eepe~ 196 (214)
.|+|||++- ++++|-. +-.+......+...|+...-++-|+.
T Consensus 270 VwS~Gv~l~El~t~G~~------Pf~~~~~~~~~~~~i~~g~~~~~p~~ 312 (353)
T 4ase_A 270 VWSFGVLLWEIFSLGAS------PYPGVKIDEEFCRRLKEGTRMRAPDY 312 (353)
T ss_dssp HHHHHHHHHHHTTTSCC------SSTTCCCSHHHHHHHHHTCCCCCCTT
T ss_pred EeehHHHHHHHHhCCCC------CCCCCCHHHHHHHHHHcCCCCCCCcc
Confidence 799999887 4454421 11233334556666666655655554
No 8
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=8.26 E-value=1.5e+02 Score=24.79 Aligned_cols=15 Identities=27% Similarity=0.826 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcee
Q 028089 149 LWAFGIVFALVACGI 163 (214)
Q Consensus 149 lwafGV~faliacg~ 163 (214)
+|++||++.-+.+|-
T Consensus 230 iWSlG~il~ell~G~ 244 (361)
T 4f9c_A 230 MWSAGVIFLSLLSGR 244 (361)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHCC
Confidence 799999999877764
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.41 E-value=4.8e+02 Score=16.47 Aligned_cols=6 Identities=50% Similarity=1.132 Sum_probs=4.4
Q ss_pred CCCChh
Q 028089 175 FKETPA 180 (214)
Q Consensus 175 Fretp~ 180 (214)
|||+|.
T Consensus 23 FRePPr 28 (32)
T 3arc_T 23 FREPPR 28 (32)
T ss_dssp TSCCCC
T ss_pred hcCCCC
Confidence 777775
No 10
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=6.53 E-value=1.1e+02 Score=26.64 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhce
Q 028089 148 YLWAFGIVFALVACG 162 (214)
Q Consensus 148 ylwafGV~faliacg 162 (214)
++|++|+++.++.|+
T Consensus 16 ~~~~~~~~~~~~~~~ 30 (321)
T 3owq_A 16 FTKVMKIASVTLLGI 30 (321)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777766644444
Done!