Query 028090
Match_columns 214
No_of_seqs 115 out of 1371
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 1.6E-26 5.4E-31 183.8 9.0 175 36-212 110-343 (367)
2 3m20_A 4-oxalocrotonate tautom 37.6 26 0.00087 19.7 2.5 31 182-213 3-33 (62)
3 3abf_A 4-oxalocrotonate tautom 36.5 31 0.0011 19.2 2.8 31 182-212 4-34 (64)
4 2x4k_A 4-oxalocrotonate tautom 33.3 39 0.0013 18.5 2.9 32 182-213 6-37 (63)
5 1otf_A 4-oxalocrotonate tautom 31.9 38 0.0013 18.6 2.7 31 182-212 3-33 (62)
6 3mb2_A 4-oxalocrotonate tautom 31.5 41 0.0014 19.5 2.9 31 182-212 4-34 (72)
7 2opa_A Probable tautomerase YW 30.7 41 0.0014 18.4 2.7 31 182-212 3-33 (61)
8 3ry0_A Putative tautomerase; o 30.1 47 0.0016 18.7 2.9 31 182-212 3-33 (65)
9 3cwc_A Putative glycerate kina 29.0 39 0.0013 27.3 3.0 42 121-162 286-327 (383)
10 3mf7_A CIS-3-chloroacrylic aci 27.7 72 0.0025 21.8 3.9 33 180-212 63-95 (149)
11 3m21_A Probable tautomerase HP 27.5 47 0.0016 18.9 2.6 31 182-212 3-36 (67)
12 3ej9_A Alpha-subunit of trans- 21.6 79 0.0027 18.6 2.8 31 182-212 4-34 (76)
13 4dbe_A Orotidine 5'-phosphate 21.3 35 0.0012 25.2 1.3 29 184-212 184-213 (222)
14 3ivz_A Nitrilase; alpha-beta s 20.9 1E+02 0.0035 22.8 4.0 47 114-160 26-86 (262)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.93 E-value=1.6e-26 Score=183.78 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=134.1
Q ss_pred eEEEEe-------eecCCCCCCCEEEEeCCCCCchHHHHHh-cCC-------ceeeeecccccccchHHHHH--HhcCcE
Q 028090 36 KLEIEG-------LENLPSSDTPAVYVSNHQSFLDIYTLLT-LGK-------SFKFISKTGIFLFPVIGWAM--SMMGVI 98 (214)
Q Consensus 36 ~v~v~g-------~~~l~~~~~~~i~~~nH~s~~D~~~l~~-~~~-------~~~~~~~~~~~~~p~~~~~~--~~~g~~ 98 (214)
+.++.| .|++++ ++++|+++||+|.+|++++.. +.+ ++.|++++++...|+...+. +..+++
T Consensus 110 ~s~V~G~e~~~~~~E~l~~-~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI 188 (367)
T 1iuq_A 110 NSFVGNLSLFKDIEEKLQQ-GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICV 188 (367)
T ss_dssp GCEEECHHHHHHHHHHHHT-TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEEC
T ss_pred CCEeecchhhhhHHhhccC-CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeE
Confidence 556888 566665 789999999999999998865 433 78999999999888765531 223344
Q ss_pred Ee----e------cCCchhHHHHHHHHHHHHhC-CCeEEEEeCCeecCC----CC--cccccccHH----HHHHhCCCc-
Q 028090 99 PL----K------RMDSRSQLECLKRCMELIKK-GASVCFFPEGTRSKD----GK--LGAFKKGAF----SVAAKTGVP- 156 (214)
Q Consensus 99 ~v----~------r~~~~~~~~~~~~~~~~l~~-g~~~~ifPeG~~~~~----~~--~~~~~~g~~----~la~~~~~~- 156 (214)
+. + |++.+.+.++++++.+.|++ |.+++|||||||+++ +. ..+|++|.+ ++|.++++|
T Consensus 189 ~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~ 268 (367)
T 1iuq_A 189 YSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPG 268 (367)
T ss_dssp CCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCE
T ss_pred EecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCc
Confidence 43 4 55666777899999999998 559999999999985 34 456999999 999999999
Q ss_pred -EEEEEEeCCCccCcCC--------CCCCccceeEEEEEcCCCCCCC-----------hHHHHHHHHHHHHHHhcc
Q 028090 157 -VVPITLVGTGKIMPSG--------MEGMLNEGTIKVVIHKPIQGHD-----------AGELCNEARNSIADALGL 212 (214)
Q Consensus 157 -ivpv~i~~~~~~~~~~--------~~~~~~~~~~~v~~g~pi~~~~-----------~~~~~~~~~~~i~~~l~~ 212 (214)
|+|+++. +++.++.. ..+..+++.+.|.+|+||+.++ .+++++++++.|++.+.+
T Consensus 269 hIvPvaI~-t~~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~~ 343 (367)
T 1iuq_A 269 HLFPLALL-CHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNV 343 (367)
T ss_dssp EEEEEEEE-CGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEE-eccccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 77777652 2234566899999999998532 346777788888776643
No 2
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.57 E-value=26 Score=19.74 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhccC
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGLQ 213 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~~ 213 (214)
++|.. ++.+.+..+++.+++.+.+.+.+...
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 56666 67777888999999999998877643
No 3
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=36.46 E-value=31 Score=19.22 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
+.|...+..+.+..+++.+++.+.+++.+..
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~ 34 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGE 34 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5566666666777889999999999887765
No 4
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=33.27 E-value=39 Score=18.53 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhccC
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGLQ 213 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~~ 213 (214)
++|...+..+.+..+++.+++.+.+.+.+...
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 55666555566778899999999999887653
No 5
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=31.94 E-value=38 Score=18.62 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|...+..+.+..+++.+++.+.+.+.+..
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~ 33 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDA 33 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4566555556777888999999998887654
No 6
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=31.53 E-value=41 Score=19.47 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|.+.+..+.+..+++.+++.+.+.+.+..
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~ 34 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDV 34 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5666666667778889999999999887754
No 7
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=30.71 E-value=41 Score=18.42 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|...+..+.+..+++.+++.+.+.+.+..
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~ 33 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGA 33 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4566555556777888999999999887654
No 8
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=30.05 E-value=47 Score=18.70 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|.+.+..+.+..+++.+++.+.+.+.+..
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~ 33 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAAHETLGT 33 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4566666566777889999999999887754
No 9
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=29.01 E-value=39 Score=27.29 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCeecCCCCcccccccHHHHHHhCCCcEEEEEE
Q 028090 121 KGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITL 162 (214)
Q Consensus 121 ~g~~~~ifPeG~~~~~~~~~~~~~g~~~la~~~~~~ivpv~i 162 (214)
++-.++|.=||........-+...|+++.|++.++||+-+.=
T Consensus 286 ~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG 327 (383)
T 3cwc_A 286 ADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAG 327 (383)
T ss_dssp HHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence 345799999999877555566678999999999999877654
No 10
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=27.74 E-value=72 Score=21.83 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=24.9
Q ss_pred eeEEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 180 GTIKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 180 ~~~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
.-+.+.+++.=+.+...++.+++.+.+.+.+..
T Consensus 63 v~I~i~~~~GRt~eqK~~L~~~I~~~l~~~~g~ 95 (149)
T 3mf7_A 63 IFVHGLHREGRSADLKGQLAQRIVDDVSVAAEI 95 (149)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 356777777666677888889898888877654
No 11
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.52 E-value=47 Score=18.87 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.2
Q ss_pred EEEEEcC---CCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHK---PIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~---pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|.+-+ ..+.+..+++.+++.+.+.+.+..
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~ 36 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNK 36 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 5566665 677788889999999999887764
No 12
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.65 E-value=79 Score=18.57 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHhcc
Q 028090 182 IKVVIHKPIQGHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 182 ~~v~~g~pi~~~~~~~~~~~~~~~i~~~l~~ 212 (214)
++|.+.+.-+.+..+++.+++.+.+.+.+..
T Consensus 4 I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~ 34 (76)
T 3ej9_A 4 ISCDMRYGRTDEQKRALSAGLLRVISEATGE 34 (76)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 5666666666778889999999999887654
No 13
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=21.29 E-value=35 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=23.8
Q ss_pred EEEcCCCC-CCChHHHHHHHHHHHHHHhcc
Q 028090 184 VVIHKPIQ-GHDAGELCNEARNSIADALGL 212 (214)
Q Consensus 184 v~~g~pi~-~~~~~~~~~~~~~~i~~~l~~ 212 (214)
+.+|+||+ .+|+.+.++++.+.+.+.+.+
T Consensus 184 iVVGR~I~~A~dP~~aa~~i~~~i~~~~~~ 213 (222)
T 4dbe_A 184 EIIGRSIYNAGNPLTALRTINKIIEDKVMK 213 (222)
T ss_dssp EEECHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 66899998 578998889999988887654
No 14
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=20.93 E-value=1e+02 Score=22.79 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHhCCCeEEEEeCCeecC-CCC----c---------ccccccHHHHHHhCCCcEEEE
Q 028090 114 RCMELIKKGASVCFFPEGTRSK-DGK----L---------GAFKKGAFSVAAKTGVPVVPI 160 (214)
Q Consensus 114 ~~~~~l~~g~~~~ifPeG~~~~-~~~----~---------~~~~~g~~~la~~~~~~ivpv 160 (214)
.+.++.++|-.+++|||-..+- ... . .+...-+..+|++.++.|+.=
T Consensus 26 ~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G 86 (262)
T 3ivz_A 26 LIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAG 86 (262)
T ss_dssp HHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEe
Confidence 3334445778899999965432 110 0 123344556777778776643
Done!