RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 028090
         (214 letters)



>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
           helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
           PDB: 1k30_A
          Length = 367

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 43/207 (20%)

Query: 26  WATLTVSPFLKLE---IEGLENLPS------SDTPAVYVSNHQSFLD---IYTLL----- 68
           +    + P +      +  L                V +SNHQ+  D   I  LL     
Sbjct: 97  FGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNP 156

Query: 69  TLGKSFKFISKTGIFLFPVIGWAMSMMGVI------------PLKRMDSRSQLECLKRCM 116
            + ++  F++   +   P+         +I             L     ++    LK   
Sbjct: 157 YIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMA 216

Query: 117 ELIKKGASV-CFFPEGTRS-KDGKLGAFKKGAFS---------VAAKTGVP--VVPITLV 163
            L++ G+ +    P G R   D   G +    F          +   + VP  + P+ L+
Sbjct: 217 LLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL 276

Query: 164 GTGKIMPSGMEGMLNEGTIKVVIHKPI 190
               IMP   +  +  G  +V+     
Sbjct: 277 -CHDIMPPPSQVEIEIGEKRVIAFNGA 302


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.017
 Identities = 41/228 (17%), Positives = 68/228 (29%), Gaps = 69/228 (30%)

Query: 22  IAKLWAT--LTVSPFLKLEIEGLENLPSS--DTPAVY---------VSNHQSFLDIYTLL 68
           +  L+ T  + V   +K   E L  L  +  D   V+         + N  +  D   LL
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232

Query: 69  TLGKSFKFISKTGIFLFPVIGWAMSMMGVIPLKRMDSRSQLECLKRCM------------ 116
           ++  S   I    +  + V       +G  P    + RS L+                  
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKL---LGFTP---GELRSYLKGATGHSQGLVTAVAIAET 286

Query: 117 -------ELIKKGASVCFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVVPITLV------ 163
                    ++K  +V FF  G R  +         A+   +      +P +++      
Sbjct: 287 DSWESFFVSVRKAITVLFF-IGVRCYE---------AYPNTS------LPPSILEDSLEN 330

Query: 164 GTGKIMPSGM---EGMLNEGTIKVV----IHKPIQGHDAGELCNEARN 204
             G   PS M     +  E     V     H P        L N A+N
Sbjct: 331 NEGV--PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376


>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
           infectious disease, S aminopeptidase, protease,
           epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
           3mr1_A
          Length = 262

 Score = 27.5 bits (62), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)

Query: 164 GTGKIMPSGM----EGMLNEGTIKVVIHKP 189
           GTG  +  GM    E M+N G    ++ K 
Sbjct: 191 GTGLTLKEGMFFTVEPMINAGNYDTILSKL 220


>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
           biosynthesis, diaminopimelate biosynthesis, lyase,
           schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A
           3di0_A
          Length = 292

 Score = 27.1 bits (61), Expect = 4.7
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 7/39 (17%)

Query: 90  WAMSMMGVI------PLKRMDSRSQLECLKRCMELIKKG 122
              S +G        PL  ++     + L+   +  K G
Sbjct: 254 ALTSYLGFGNYELRLPLVSLEDTDT-KVLREAYDTFKAG 291


>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase,
           NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli}
           PDB: 2v8z_A 3nev_A* 3n2x_A*
          Length = 343

 Score = 26.8 bits (60), Expect = 5.6
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 8/39 (20%)

Query: 86  PVIGWAMSMMGVI-------PLKRMDSRSQLECLKRCME 117
            VI  A+ + G         P   +D   +   LK  ++
Sbjct: 285 NVIKEAIVLCGRPVSTHVLPPASPLDEPRK-AQLKTLLQ 322


>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
           5'-phosphate, thiocystei aminoacrylate, enzyme-product
           complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
           c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
          Length = 390

 Score = 26.4 bits (59), Expect = 7.5
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 149 VAAKTGVP--VVPITLVGTGKIMPSGMEGMLNEGTIKVV 185
           +AA+ G+     P+          + +   L   T ++V
Sbjct: 121 IAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT-RLV 158


>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
           HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
           3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
           1y1n_A 1yj3_A
          Length = 285

 Score = 26.0 bits (58), Expect = 9.1
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 4/27 (14%)

Query: 164 GTGKIMPSGM----EGMLNEGTIKVVI 186
               IM  GM    E M+N G +   I
Sbjct: 224 AVETIMQPGMTFTIEPMINLGALDYEI 250


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,305,175
Number of extensions: 191223
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 17
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)