Query 028091
Match_columns 214
No_of_seqs 151 out of 1137
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnr_B Probable exosome comple 100.0 5.7E-56 2E-60 365.0 25.9 212 1-213 8-219 (240)
2 2nn6_B Exosome complex exonucl 100.0 1.9E-55 6.5E-60 363.7 24.1 213 1-213 8-221 (249)
3 2po1_A Probable exosome comple 100.0 5.6E-55 1.9E-59 360.9 24.2 212 1-213 8-219 (249)
4 2wp8_B Exosome complex compone 100.0 3.3E-54 1.1E-58 355.7 23.6 212 1-213 4-217 (246)
5 2je6_B RRP41, exosome complex 100.0 8.2E-54 2.8E-58 354.2 25.7 211 2-213 13-223 (250)
6 3m7n_D Probable exosome comple 100.0 4.3E-54 1.5E-58 356.7 23.7 210 2-213 10-222 (258)
7 2nn6_F MTR3, exosome component 100.0 5.6E-51 1.9E-55 341.0 15.1 211 2-213 19-244 (272)
8 3dd6_A Ribonuclease PH; exorib 100.0 2.9E-49 1E-53 327.3 23.3 205 7-213 9-232 (255)
9 3b4t_A Ribonuclease PH; RNAse, 100.0 2.7E-49 9.2E-54 329.1 22.8 206 6-213 3-227 (262)
10 1udn_A Ribonuclease PH, RNAse 100.0 6.6E-49 2.2E-53 325.6 25.0 203 9-213 1-221 (255)
11 1oys_A Ribonuclease PH; transf 100.0 2E-49 6.8E-54 327.0 19.4 203 9-213 1-222 (245)
12 2nn6_D Exosome complex exonucl 100.0 9.5E-49 3.2E-53 321.4 23.2 199 5-213 12-215 (237)
13 1r6l_A Ribonuclease PH; beta-a 100.0 2E-48 7E-53 319.9 24.0 203 9-213 2-222 (239)
14 3m7n_G Probable exosome comple 100.0 1.5E-47 5.3E-52 318.0 25.4 204 6-213 19-245 (259)
15 2po1_B Probable exosome comple 100.0 1.6E-47 5.5E-52 320.8 24.2 203 6-213 23-257 (277)
16 2wnr_A Probable exosome comple 100.0 4.6E-47 1.6E-51 317.2 23.8 204 5-213 20-254 (271)
17 2je6_A RRP42, exosome complex 100.0 4.4E-47 1.5E-51 318.2 23.2 205 4-213 24-260 (277)
18 3hkm_A OS03G0854200 protein; R 100.0 6.3E-47 2.1E-51 311.7 22.9 195 7-213 2-215 (246)
19 2nn6_C Exosome complex exonucl 100.0 2.3E-47 7.9E-52 320.0 18.3 205 5-213 20-257 (278)
20 3gme_A Polyribonucleotide nucl 100.0 1.9E-45 6.5E-50 329.7 21.5 208 3-213 308-526 (549)
21 2nn6_E Exosome complex exonucl 100.0 7.2E-46 2.5E-50 314.6 16.5 204 6-213 33-273 (305)
22 2wp8_A Exosome complex compone 100.0 5.7E-45 2E-49 309.2 19.6 202 5-213 19-268 (305)
23 2nn6_A Polymyositis/scleroderm 100.0 1.2E-44 4E-49 312.2 20.9 202 5-213 35-271 (358)
24 4aid_A Polyribonucleotide nucl 100.0 3.2E-44 1.1E-48 330.4 21.9 208 3-213 324-542 (726)
25 3u1k_A Polyribonucleotide nucl 100.0 4E-44 1.4E-48 326.8 21.6 208 2-213 311-539 (630)
26 1e3p_A Guanosine pentaphosphat 100.0 5.2E-44 1.8E-48 331.3 21.8 209 2-213 348-571 (757)
27 3cdi_A Polynucleotide phosphor 100.0 4.4E-43 1.5E-47 324.1 22.7 209 2-213 313-532 (723)
28 3krn_A Protein C14A4.5, confir 100.0 3E-44 1E-48 291.9 -3.0 186 16-213 2-190 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 4.4E-33 1.5E-37 254.1 21.2 188 18-213 13-209 (630)
30 3gme_A Polyribonucleotide nucl 100.0 1.9E-27 6.3E-32 213.4 23.2 188 18-213 12-208 (549)
31 3cdi_A Polynucleotide phosphor 100.0 2.1E-27 7.1E-32 219.7 22.4 186 20-213 20-214 (723)
32 4aid_A Polyribonucleotide nucl 100.0 4.1E-27 1.4E-31 216.9 23.5 188 18-213 26-222 (726)
33 1e3p_A Guanosine pentaphosphat 99.9 1.3E-26 4.4E-31 215.1 20.2 188 19-213 36-249 (757)
34 4evm_A Thioredoxin family prot 24.4 1.1E+02 0.0037 20.0 4.5 28 185-213 110-137 (138)
35 1zzo_A RV1677; thioredoxin fol 23.5 1E+02 0.0035 20.2 4.2 26 185-212 107-132 (136)
36 3f9m_A Glucokinase; hexokinase 20.4 89 0.003 27.3 4.0 39 95-141 424-462 (470)
37 3erw_A Sporulation thiol-disul 20.1 1.5E+02 0.005 19.7 4.5 26 185-211 120-145 (145)
38 2fwh_A Thiol:disulfide interch 20.1 28 0.00095 24.0 0.5 30 185-214 97-127 (134)
No 1
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.7e-56 Score=365.02 Aligned_cols=212 Identities=43% Similarity=0.705 Sum_probs=195.9
Q ss_pred CcccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc
Q 028091 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (214)
Q Consensus 1 ~~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (214)
||+++++++|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..++..+.|++|.|.++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 8 DQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 78899999999999999999999999999999999999999999999999998876655567899999999999999998
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEe
Q 028091 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (214)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~ 160 (214)
+++ .+.+++++.+++++|+++|+++++++.||+|+|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+|+
T Consensus 88 ~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~ 166 (240)
T 2wnr_B 88 ERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK 166 (240)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred Ccc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEE
Confidence 875 5678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 161 ~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
+++.+++||+.+||..+++.++|+++++.|+|++++++|+++.+++++++++|
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A 219 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLA 219 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHH
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHH
Confidence 99999999999999999999999977889999999999999999999999876
No 2
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.9e-55 Score=363.72 Aligned_cols=213 Identities=52% Similarity=0.901 Sum_probs=198.4
Q ss_pred CcccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCcccccc-ccCCCCceEEEEEEeecCCCc
Q 028091 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEYSMANFST 79 (214)
Q Consensus 1 ~~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~-~~~~~~~g~l~v~v~~~~~~~ 79 (214)
||+++++++|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+.+ ..+.+++|.|.++|+++||++
T Consensus 8 ~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~ 87 (249)
T 2nn6_B 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFST 87 (249)
T ss_dssp ---CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTS
T ss_pred hhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcc
Confidence 6899999999999999999999999999999999999999999999999999765433 224688999999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEE
Q 028091 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159 (214)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~ 159 (214)
+++.+++.+++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g 167 (249)
T 2nn6_B 88 GERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAG 167 (249)
T ss_dssp SSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEE
T ss_pred cccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEE
Confidence 98876778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 160 YLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 160 ~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
++++.+++||+.+||..+++.++|+++++.++|+++|++|+++.++|++++++|
T Consensus 168 ~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A 221 (249)
T 2nn6_B 168 FVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAA 221 (249)
T ss_dssp EETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHH
T ss_pred EECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHH
Confidence 999999999999999999999999976788999999999999999999999876
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=5.6e-55 Score=360.88 Aligned_cols=212 Identities=46% Similarity=0.743 Sum_probs=200.6
Q ss_pred CcccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc
Q 028091 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (214)
Q Consensus 1 ~~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (214)
||+++++++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+||.+...+..+.+++|.|.++|+++||+++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp -CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred eEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 68899999999999999999999999999999999999999999999999998877656677899999999999999998
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEe
Q 028091 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (214)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~ 160 (214)
+++ .+.+++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+|+
T Consensus 88 ~~~-~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 166 (249)
T 2po1_A 88 ERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK 166 (249)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEE
Confidence 765 4457888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 161 ~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
+++.+++||+.+||..+++.++|+++++.++|+++|++|+++.+++.+++++|
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A 219 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHH
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHH
Confidence 99999999999999999999999977889999999999999999999999876
No 4
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-54 Score=355.70 Aligned_cols=212 Identities=38% Similarity=0.572 Sum_probs=186.6
Q ss_pred CcccCCCCCcCCCCCCCCCcceEEEECCCCCC-CeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCc
Q 028091 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79 (214)
Q Consensus 1 ~~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~ 79 (214)
||+++++++|+|||.++|+|++++++|+++++ +|||++++|+|+|+|+|+||.+..++..+.+++|.|.++|+++||++
T Consensus 4 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~ 83 (246)
T 2wp8_B 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSK 83 (246)
T ss_dssp CCSSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----
T ss_pred hhhhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccc
Confidence 79999999999999999999999999999999 99999999999999999999875555556789999999999999999
Q ss_pred ccccCC-CCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEE
Q 028091 80 GDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (214)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~ 158 (214)
+++.++ +++++++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++|+
T Consensus 84 ~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~ 163 (246)
T 2wp8_B 84 FERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISV 163 (246)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEE
T ss_pred ccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEE
Confidence 887654 6677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 159 ~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
|++++.+++||+.+|| .+++.++|++.++.++|++++++|+++.++|.+++++|
T Consensus 164 g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A 217 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIG 217 (246)
T ss_dssp EEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHH
T ss_pred EEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHH
Confidence 9999999999999999 99999999866889999999999999999999999876
No 5
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=8.2e-54 Score=354.16 Aligned_cols=211 Identities=42% Similarity=0.742 Sum_probs=200.7
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCccc
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~ 81 (214)
|+++++++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+||.+...+..+.+++|.|.++|+++||++++
T Consensus 13 ~~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 13 KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp CSBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ceecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 68999999999999999999999999999999999999999999999999987766556678999999999999999988
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEee
Q 028091 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (214)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~ 161 (214)
++ .+++++++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+|||++++|+++|+|++
T Consensus 93 ~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~ 171 (250)
T 2je6_B 93 RK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA 171 (250)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE
T ss_pred cc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE
Confidence 75 66788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 162 ~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
++.+++|||.+||..+++.++|+++++.++|+++|+.|+++.+++.+++++|
T Consensus 172 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A 223 (250)
T 2je6_B 172 DGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLA 223 (250)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHH
T ss_pred CCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHH
Confidence 9999999999999999999999976788999999999999999999999876
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=4.3e-54 Score=356.68 Aligned_cols=210 Identities=43% Similarity=0.687 Sum_probs=197.7
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCccc
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~ 81 (214)
++|. +++|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+...+..+.|++|+|.++|+++||++++
T Consensus 10 ~~i~-~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~ 88 (258)
T 3m7n_D 10 KLIV-DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE 88 (258)
T ss_dssp CSEE-TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS
T ss_pred HHHh-cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc
Confidence 4566 899999999999999999999999999999999999999999999988766655678999999999999999987
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEee
Q 028091 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (214)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~ 161 (214)
++ .+.+++++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+|++
T Consensus 89 r~-~~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i 167 (258)
T 3m7n_D 89 RK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA 167 (258)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE
T ss_pred cc-CCCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE
Confidence 64 45688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeCChhhhhcCCCcEEEEEcCCC---CcEEEEEEeeccCHHHHHHHHhcC
Q 028091 162 NSTPLLDLNYVEDSAGGPDVTVGILPTL---DKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 162 ~~~~l~DPt~~Ee~~~~~~~tv~~~~~~---~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
++.+++||+..|+..+++.++|+++++. ++|+++|++|.++.++|.+++++|
T Consensus 168 ~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A 222 (258)
T 3m7n_D 168 DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELA 222 (258)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHH
Confidence 9999999999999999999999975777 999999999999999999999986
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.6e-51 Score=340.97 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=184.7
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccC-----------CCCceEEEE
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----------MSDQALVRC 70 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~-----------~~~~g~l~v 70 (214)
+|+.+++.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+...+. .++++.+.+
T Consensus 19 ~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 98 (272)
T 2nn6_F 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLC 98 (272)
T ss_dssp ----------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEE
T ss_pred ccccccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEE
Confidence 456678999999999999999999999999999999999999999999999876553220 467899999
Q ss_pred EEeecCCCcccccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCC
Q 028091 71 EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR 150 (214)
Q Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~ 150 (214)
+|++.||++++++ .+++++++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+|||++
T Consensus 99 ~~~~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~ 177 (272)
T 2nn6_F 99 DFRRAPFAGRRRR-APPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMY 177 (272)
T ss_dssp EEEECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBS
T ss_pred EEEecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccc
Confidence 9999999998764 467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEe---eCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCH-HHHHHHHhcC
Q 028091 151 DIVTSCSAGY---LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSS-SFFSLLISQR 213 (214)
Q Consensus 151 ~~~~~vt~~~---~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~-~~~~~~~~~~ 213 (214)
++++++++|+ +++.+|+||+.+||..+++.++|+++++.++|+++|++|+++. ++|.+++++|
T Consensus 178 ~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A 244 (272)
T 2nn6_F 178 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLG 244 (272)
T ss_dssp SCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHH
T ss_pred CcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHH
Confidence 9999999999 8889999999999999999999998899999999999999999 9999999875
No 8
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=2.9e-49 Score=327.27 Aligned_cols=205 Identities=30% Similarity=0.408 Sum_probs=189.2
Q ss_pred CCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCC-
Q 028091 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK- 85 (214)
Q Consensus 7 ~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~- 85 (214)
...|.|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+ ++...|++|+|.++|++.|+++.++.++
T Consensus 9 ~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~P~a~~~~~~Re 87 (255)
T 3dd6_A 9 HHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWVTAEYAMIPRATEQRTIRE 87 (255)
T ss_dssp --CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECTTSSSSCCCCC
T ss_pred cccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCC-CCCCCCCceEEEEEEEECCCccccccccc
Confidence 45899999999999999999999999999999999999999999886533 3445689999999999999999886432
Q ss_pred ---CCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhC-----------CCCCCC
Q 028091 86 ---PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRD 151 (214)
Q Consensus 86 ---~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~-----------gIp~~~ 151 (214)
|++++++.+++++|+|+|+++++++.||+|+|+|+++||++|||+++|+++|+++||+++ +|||++
T Consensus 88 ~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~ 167 (255)
T 3dd6_A 88 SSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKD 167 (255)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCccC
Confidence 678899999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEEEEeeCCeEE-EeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 152 IVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 152 ~~~~vt~~~~~~~~l-~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+|+++|+|++++.++ +|||.+||..++..++|+ +++.|+|+++|++| .++.++|.+|+++|
T Consensus 168 ~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va-~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A 232 (255)
T 3dd6_A 168 YLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVI-MTGKGQFVEVQGTGEEATFSRAQLNELLDAA 232 (255)
T ss_dssp CEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEE-EETTSCEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred ceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEE-EcCCCcEEEEEecCCCCCcCHHHHHHHHHHH
Confidence 999999999999888 999999999999999998 68999999999986 48999999999876
No 9
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-49 Score=329.14 Aligned_cols=206 Identities=30% Similarity=0.377 Sum_probs=187.7
Q ss_pred CCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCC
Q 028091 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (214)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (214)
..++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+.. ...+++|+|.++|++.|++++++.++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-RKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCc-cCCCCceEEEEEEEeCCCcccccccc
Confidence 56899999999999999999999999999999999999999999987654322 23378899999999999999876433
Q ss_pred ----CCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhC------------CCCC
Q 028091 86 ----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA------------GIPM 149 (214)
Q Consensus 86 ----~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~------------gIp~ 149 (214)
|++++++.+++++|+|+|+++++++.||+|+|+|+++||++|||+++|+++|+++||+++ +|||
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~ 161 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPL 161 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCB
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcc
Confidence 578899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 150 RDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 150 ~~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+++|+++|+|++++.+++|||.+||+.+++.++|++ ++.|+|+++++.| .++.++|.+++++|
T Consensus 162 ~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A 227 (262)
T 3b4t_A 162 SCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVA-TDTGTLVEIQGTGEGATFARSTLDKLLDMA 227 (262)
T ss_dssp CSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEECSSCCCBCHHHHHHHHHHH
T ss_pred cCceeEEEEEEECCEEEECCCHHHHhccCceEEEEE-cCCCCEEEEEeeCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 8889999999997 58999999999875
No 10
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=6.6e-49 Score=325.57 Aligned_cols=203 Identities=29% Similarity=0.380 Sum_probs=187.5
Q ss_pred CcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccC----
Q 028091 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (214)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~---- 84 (214)
+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.+ ++...+++|+|.++|.+.|+++.++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVP-NWLKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCC-CCCCCCCceEEEEEEEcCCCccccccccccC
Confidence 499999999999999999999999999999999999999999986653 233457899999999999999987643
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCCCce
Q 028091 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (214)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g-----------Ip~~~~~ 153 (214)
.|+++.++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|++ |||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 35788999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 154 ~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+++|+|++++.+++||+.+||..+++.++|++ ++.|+++.++++| .++.++|.+++++|
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~-~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A 221 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVVG-TGSGRLSEVHTMGEEYSFTKDELIKMLDLA 221 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999985 8889999999986 58999999999875
No 11
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=2e-49 Score=326.97 Aligned_cols=203 Identities=31% Similarity=0.371 Sum_probs=171.5
Q ss_pred CcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccC----
Q 028091 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (214)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~---- 84 (214)
.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|++|...+. ....+++|++.++|+++|++++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPP-FLRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCG-GGTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCC-ccCCCCceEEEEEEEeCCCcCccccccccc
Confidence 4999999999999999999999999999999999999999999865442 23457899999999999999987643
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCCCce
Q 028091 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (214)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g-----------Ip~~~~~ 153 (214)
.|+++.++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|++ +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 25688899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeeCCeEE-EeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 154 TSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 154 ~~vt~~~~~~~~l-~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+++|+|++++.++ +||+.+||+.+++.++|+ +++.|+|+++|++| .++.++|.+++++|
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~-~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A 222 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVI-MTGSGRFVELQGTGEEATFSREDLNGLLGLA 222 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEE-EETTSCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEE-EcCCCcEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 9999999998888 999999999999999998 48889999999987 58999999999876
No 12
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=9.5e-49 Score=321.43 Aligned_cols=199 Identities=26% Similarity=0.373 Sum_probs=167.2
Q ss_pred CCCCCcCCCCCCC----CCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc
Q 028091 5 SPEGLRLDGRRPT----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (214)
Q Consensus 5 ~~~~~R~DgR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (214)
+.++.|+|||+++ |+|++++++|++++++|||+|++|+|+|+|+|+||.+.++ ..+.+++|.++++|. |++
T Consensus 12 ~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~-~~~~~~~g~l~~~~~--p~~-- 86 (237)
T 2nn6_D 12 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKV-SKEIFNKATLEVILR--PKI-- 86 (237)
T ss_dssp ---------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS--
T ss_pred CccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccc-cccCCCcEEEEEEec--CCC--
Confidence 3578999999999 9999999999999999999999999999999999987543 345688898887664 553
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEe
Q 028091 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (214)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~ 160 (214)
|.+++++.+++++|+|+|++.++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+|+
T Consensus 87 -----g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 161 (237)
T 2nn6_D 87 -----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACAL 161 (237)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEE
T ss_pred -----CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEE
Confidence 345688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 161 L-NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 161 ~-~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
+ ++.+++||+..||..+++.++|++.++.++|+++|+.|+++.++|++++++|
T Consensus 162 ~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A 215 (237)
T 2nn6_D 162 DSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAA 215 (237)
T ss_dssp CTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHH
T ss_pred ecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHH
Confidence 9 7899999999999999999999976566699999999999999999999876
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=2e-48 Score=319.85 Aligned_cols=203 Identities=32% Similarity=0.442 Sum_probs=185.2
Q ss_pred CcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCC---
Q 028091 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK--- 85 (214)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~--- 85 (214)
.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+. +...+++|++.++|.+.|+++.++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~ 80 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPR-FLKGQGQGWLTAEYGMLPRSTGERNQREAS 80 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSS-CCC---CCEEEEEEEECTTSSSSCCCCHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCC-ccCCCCcEEEEEEEEeCCCccccccccccC
Confidence 4999999999999999999999999999999999999999998765432 223468899999999999999876332
Q ss_pred -CCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCCCce
Q 028091 86 -PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (214)
Q Consensus 86 -~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g-----------Ip~~~~~ 153 (214)
|+++.++.+++++|+|+|+++++++.||+|.|+|+++||++|||+++|++||+++||+|++ |||+++|
T Consensus 81 ~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~ 160 (239)
T 1r6l_A 81 RGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMV 160 (239)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCce
Confidence 6788999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 154 ~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+++|+|++++.+++|||.+||+.+++.++|++ ++.|+++.+++.| .++.++|.+++++|
T Consensus 161 ~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a 222 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELA 222 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999985 8888999999986 58999999999875
No 14
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.5e-47 Score=318.05 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=186.4
Q ss_pred CCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCC
Q 028091 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (214)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (214)
++|+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+++... +..+.|++|++.++|+++|+++++++ .
T Consensus 19 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~~-~ 95 (259)
T 3m7n_G 19 RDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE--PYPDTPDRGVIIVNAELVPLASPTFE-P 95 (259)
T ss_dssp HTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEEC--CCSSCTTSCEEEEEEECCTTSCTTCC-S
T ss_pred hcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccC--CCCCCCCceEEEEEEEeCCccccccc-C
Confidence 48999999999999999999999999999999999999999999954322 23356889999999999999998763 5
Q ss_pred CCCCcchHHHHHHHHHHHHH--hhccCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCC----------
Q 028091 86 PKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGI---------- 147 (214)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gI---------- 147 (214)
|++++++.+++++|+|+|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||++++|
T Consensus 96 g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~ 175 (259)
T 3m7n_G 96 GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175 (259)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred CCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCce
Confidence 77889999999999999999 7888876 74 899999999999999999999999999999999
Q ss_pred ---CCCCceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee--ccCHHHHHHHHhcC
Q 028091 148 ---PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL--KFSSSFFSLLISQR 213 (214)
Q Consensus 148 ---p~~~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G--~~~~~~~~~~~~~~ 213 (214)
||+++|+++|+|++++.+++|||.+||+.+++.++|++ +.+|+++++++.| .++.+++.+++++|
T Consensus 176 ~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~l~~~l~~a 245 (259)
T 3m7n_G 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITT-DKDDNVVAMQKSGGYLLDEKLFDELLDVS 245 (259)
T ss_dssp EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEE-CTTSCEEEEEEESSCCBCHHHHHHHHHHH
T ss_pred ecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEE-eCCCcEEEEECCCCCCcCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999985 7788999999985 69999999999875
No 15
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1.6e-47 Score=320.81 Aligned_cols=203 Identities=21% Similarity=0.278 Sum_probs=186.1
Q ss_pred CCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeecCCCcccccC
Q 028091 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (214)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (214)
++++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+ +|.+. ..+.|++|+|.++|+++|++++.+.
T Consensus 23 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~~~~~~~p~a~~~~~- 98 (277)
T 2po1_B 23 KEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP---FPDTPNMGVMTTNVELVPLASPTFE- 98 (277)
T ss_dssp HTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTSCEEEEEEEECGGGCTTCC-
T ss_pred hcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCC---CCCCCCceEEEEEEEeCCCcccccc-
Confidence 689999999999999999999999999999999999999999999 65443 3356899999999999999987653
Q ss_pred CCCCCcchHHHHHHHHHHHHH--hhccCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCC----------
Q 028091 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG---------- 146 (214)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g---------- 146 (214)
.|.+++++.+++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||+|+|
T Consensus 99 ~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~ 178 (277)
T 2po1_B 99 PGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET 178 (277)
T ss_dssp SSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTT
T ss_pred CCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCC
Confidence 457788999999999999998 5888876 54 69999999999999999999999999999999
Q ss_pred -----------CCCCCceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEe--eccCHHHHHHHHhcC
Q 028091 147 -----------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVC--LKFSSSFFSLLISQR 213 (214)
Q Consensus 147 -----------Ip~~~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~--G~~~~~~~~~~~~~~ 213 (214)
+||+++|+++|+|++++.+++||+.+||..+++.++|++ +..|+|+++++. |.++.++|.+++++|
T Consensus 179 ~~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~A 257 (277)
T 2po1_B 179 GEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVETA 257 (277)
T ss_dssp CCEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred ceeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999985 888999999999 479999999999876
No 16
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4.6e-47 Score=317.15 Aligned_cols=204 Identities=20% Similarity=0.263 Sum_probs=186.3
Q ss_pred CCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeecCCCccccc
Q 028091 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (214)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~ 83 (214)
+++++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+ +|.+. ..+.+++|.+.++|+++|++++++
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~v~~~~~p~a~~~~- 95 (271)
T 2wnr_A 20 INNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP---FPDTPEMGVILTNSELLPMASPTF- 95 (271)
T ss_dssp HHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTCCEEEEEEEECGGGCTTC-
T ss_pred HhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecC---CCCCCCceEEEEEEEeCCcccccc-
Confidence 4589999999999999999999999999999999999999999999 55432 235689999999999999998874
Q ss_pred CCCCCCcchHHHHHHHHHHHHH--hhccCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCC---------
Q 028091 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (214)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g--------- 146 (214)
+.|++++++.+++++|+|+|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||++++
T Consensus 96 ~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~ 175 (271)
T 2wnr_A 96 EPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDG 175 (271)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETT
T ss_pred cCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 3567888999999999999999 5788876 53 79999999999999999999999999999999
Q ss_pred -----------CCCCCceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee--ccCHHHHHHHHhcC
Q 028091 147 -----------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL--KFSSSFFSLLISQR 213 (214)
Q Consensus 147 -----------Ip~~~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G--~~~~~~~~~~~~~~ 213 (214)
+||+++|+++|+|++++.+++|||.+||..+++.++|++ +..|+|+++++.| .++.+++.+++++|
T Consensus 176 ~~~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~~~i~~i~~~g~~~~~~~~l~~~l~~a 254 (271)
T 2wnr_A 176 EVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGV-TEEGSICAMQKGGEGPLTRDDVLKAVSIA 254 (271)
T ss_dssp EEEEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEEESSSCBCHHHHHHHHHHH
T ss_pred ceeeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 7779999999985 69999999999876
No 17
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=4.4e-47 Score=318.18 Aligned_cols=205 Identities=20% Similarity=0.221 Sum_probs=186.3
Q ss_pred cCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeecCCCcccc
Q 028091 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (214)
Q Consensus 4 ~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~ 82 (214)
.+++++|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+ +|.+ +..+.+++|.+.++|+++|++++.+
T Consensus 24 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~---p~~~~~~~g~l~v~~~~~p~a~~~~ 100 (277)
T 2je6_A 24 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDK---PYEDTPNQGNLIVNVELLPLAYETF 100 (277)
T ss_dssp TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEEC---CCTTCTTCCEEEEEEEECTTSCTTC
T ss_pred HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeC---CCCCCCCccEEEEEEEeCCccCccc
Confidence 35689999999999999999999999999999999999999999999 4433 2335689999999999999999775
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHh--hccCCC------CCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC--------
Q 028091 83 MRKPKGDRRSTEISLVIRQTMEAC--ILTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (214)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~~--i~~~~~------p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~g-------- 146 (214)
+ .|++++++.+++++|+|+|+++ ++++.| +.|.|+|+++||++|||+++|+++|+++||++++
T Consensus 101 ~-~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~ 179 (277)
T 2je6_A 101 E-PGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHS 179 (277)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred c-cCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 3 5678889999999999999994 788887 2479999999999999999999999999999999
Q ss_pred -------------CCCCCceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee--ccCHHHHHHHHh
Q 028091 147 -------------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL--KFSSSFFSLLIS 211 (214)
Q Consensus 147 -------------Ip~~~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G--~~~~~~~~~~~~ 211 (214)
+||+++|+++|+|++++.+++|||.+||+.+++.++|++ +..|+|+++++.| .++.+++.++++
T Consensus 180 ~~~~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 258 (277)
T 2je6_A 180 NGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAEN 258 (277)
T ss_dssp --CEEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHH
T ss_pred CcceEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999985 7789999999995 689999999998
Q ss_pred cC
Q 028091 212 QR 213 (214)
Q Consensus 212 ~~ 213 (214)
+|
T Consensus 259 ~A 260 (277)
T 2je6_A 259 TA 260 (277)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 18
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=6.3e-47 Score=311.68 Aligned_cols=195 Identities=24% Similarity=0.374 Sum_probs=166.4
Q ss_pred CCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCCC
Q 028091 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86 (214)
Q Consensus 7 ~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~~ 86 (214)
++.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.. +..+.++++.++++ ++|. .|
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~-~~~~~~~~~~~~~~--~~P~-------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGT-RKGENPEKASIEVV--WKPM-------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECC-CTTSCSSSCEEEEE--EECS-------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCC-cccCCCccEEEEEE--eCCC-------CC
Confidence 68999999999999999999999999999999999999999999997543 33456788887655 4562 23
Q ss_pred CCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEee-CCeE
Q 028091 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTP 165 (214)
Q Consensus 87 ~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~-~~~~ 165 (214)
.+++++.+++++|+|+|++.++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++++|++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 466788899999999999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred EEeCChhhhhcCCCcEEEEEcCCCCcEEEEEE------------------eeccCHHHHHHHHhcC
Q 028091 166 LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQV------------------CLKFSSSFFSLLISQR 213 (214)
Q Consensus 166 l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~------------------~G~~~~~~~~~~~~~~ 213 (214)
++||+.+||+.+++.++|++ ++. ++|.+++ .|.++.+++.+++++|
T Consensus 152 llDpt~~Ee~~~~~~~~va~-~~~-~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A 215 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVF-PNS-RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERG 215 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEE-EC---------------------CCCEEEEECEEHHHHHHHHHHH
T ss_pred EECCCHHHHhcCCeeEEEEE-eCC-ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHH
Confidence 99999999999999999985 555 4777776 5679999999999876
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.3e-47 Score=320.03 Aligned_cols=205 Identities=21% Similarity=0.230 Sum_probs=185.9
Q ss_pred CCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccC
Q 028091 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (214)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (214)
+++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++... +...++++|.+.++|+++|+++++++
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~~- 96 (278)
T 2nn6_C 20 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAA--PSTDAPDKGYVVPNVDLPPLCSSRFR- 96 (278)
T ss_dssp HHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECC--CCSSSTTCCCCEEEEECCSSSCTTSC-
T ss_pred HhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeec--CCCCCCCccEEEEEEEeCCccCcccc-
Confidence 368999999999999999999999999999999999999999999986543 33356789999999999999998763
Q ss_pred CCCCCcchHHHHHHHHHHHHH--hhccCCC---C---CceEEEEEEEEecCCChHHHHHHHHHHHHHhCCC---------
Q 028091 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAGI--------- 147 (214)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p---~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gI--------- 147 (214)
.|++++++.+++++|+|+|++ +++++.| | .|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 97 ~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~ 176 (278)
T 2nn6_C 97 SGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEET 176 (278)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSS
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 567888999999999999995 5777654 3 4799999999999999999999999999999996
Q ss_pred -------------CCCCceEEEEEEeeCC-eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee--ccCHHHHHHHHh
Q 028091 148 -------------PMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL--KFSSSFFSLLIS 211 (214)
Q Consensus 148 -------------p~~~~~~~vt~~~~~~-~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G--~~~~~~~~~~~~ 211 (214)
||+++|+++|+|++++ .+++|||.+||..+++.++|++ +..|+|+++++.| .++.+++.++++
T Consensus 177 ~~~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 255 (278)
T 2nn6_C 177 ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVM-DEEGKLCCLHKPGGSGLTGAKLQDCMS 255 (278)
T ss_dssp BCCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEE-CTTCCEEEEEESCCSCCCHHHHHHHHH
T ss_pred cceecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEE-cCCCcEEEEEccCCCCCCHHHHHHHHH
Confidence 7999999999999998 9999999999999999999985 7888999999998 799999999998
Q ss_pred cC
Q 028091 212 QR 213 (214)
Q Consensus 212 ~~ 213 (214)
+|
T Consensus 256 ~a 257 (278)
T 2nn6_C 256 RA 257 (278)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 20
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=1.9e-45 Score=329.70 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=182.0
Q ss_pred ccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-ECCccccccccC--CCCceEEEEEEeecCCCc
Q 028091 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFST 79 (214)
Q Consensus 3 ~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~~--~~~~g~l~v~v~~~~~~~ 79 (214)
++++++.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+| +||.+..+..+. .++++++.++|+++||++
T Consensus 308 ~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st 387 (549)
T 3gme_A 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSV 387 (549)
T ss_dssp HHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGT
T ss_pred HHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCc
Confidence 56789999999999999999999999999999999999999999999 699765443222 247799999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhhc-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEE
Q 028091 80 GDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (214)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~ 158 (214)
+++++.+++++++.+++++++|+|+++|+ .++||+ +|+|+++||++|||.++|++||+++||+|+||||+++++++|+
T Consensus 388 ~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~ 466 (549)
T 3gme_A 388 GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 (549)
T ss_dssp TCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCC-EEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEE
T ss_pred CCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCe-EEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEEE
Confidence 99877788899999999999999999998 578996 5999999999999999999999999999999999999999999
Q ss_pred EeeCC----eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeec---cCHHHHHHHHhcC
Q 028091 159 GYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLK---FSSSFFSLLISQR 213 (214)
Q Consensus 159 ~~~~~----~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~---~~~~~~~~~~~~~ 213 (214)
|++++ .+++||+..|++.++..|+|+ ++ .+.++++|++++ ++.++|+++++||
T Consensus 467 Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va-~t-~~gitalqmd~ki~G~s~~~l~~~L~~A 526 (549)
T 3gme_A 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GS-RDGISALQMDIKIEGITKEIMQVALNQA 526 (549)
T ss_dssp EEEEETTEEEEEESCCHHHHHHSSEEEEEE-EC-SSCEEEEEEEECCSCCCHHHHHHHHHHH
T ss_pred EEEcCCCceEEEecCChHHHccCCceEEEE-ec-CCCeEEEEEccccCCcCHHHHHHHHHHH
Confidence 99976 688999999999999999998 44 455999999885 6999999999987
No 21
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.2e-46 Score=314.62 Aligned_cols=204 Identities=18% Similarity=0.215 Sum_probs=182.7
Q ss_pred CCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCC
Q 028091 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (214)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (214)
++++|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+++.. .+..+.|++|+|.++|+++|++++.++ .
T Consensus 33 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~--~p~~~~~~~g~l~~~v~~~p~a~~~~~-~ 109 (305)
T 2nn6_E 33 QEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMG--TPKLEKPNEGYLEFFVDCSASATPEFE-G 109 (305)
T ss_dssp HTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCS--CCCSSSCSSCCEEEECCCCTTTCSSCC-T
T ss_pred hcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEee--CCCcCCCCceEEEEEEEeCCCcCcccc-C
Confidence 5799999999999999999999999999999999999999999998643 344457889999999999999988763 2
Q ss_pred CCCCcchHHHHHHHHHHHHH--hhccC---CCCC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCC-------
Q 028091 86 PKGDRRSTEISLVIRQTMEA--CILTH---LMPR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR------- 150 (214)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~~~---~~p~---~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~------- 150 (214)
+.+++++.+++++|+|+|++ +|+++ .+|+ |.|+|+++||++|||++||+++|+++||++++||+.
T Consensus 110 r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~ 189 (305)
T 2nn6_E 110 RGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189 (305)
T ss_dssp TSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred CCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 34457788999999999998 68887 5775 679999999999999999999999999999999954
Q ss_pred --------------------CceEEEEEEeeCCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee--ccCHHHHHH
Q 028091 151 --------------------DIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL--KFSSSFFSL 208 (214)
Q Consensus 151 --------------------~~~~~vt~~~~~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G--~~~~~~~~~ 208 (214)
++|+++|+|++++.+++|||.+||..+++.++|+ ++..|+|+++++.| .++.+++.+
T Consensus 190 ~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va-~~~~g~i~~i~~~g~~~l~~~~l~~ 268 (305)
T 2nn6_E 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVS-VTSKGVVTCMRKVGKGSLDPESIFE 268 (305)
T ss_dssp ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEEC-CCSSSCCCEEEEEESSCBCHHHHHH
T ss_pred CceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEE-EcCCCCEEEEEccCCCCCCHHHHHH
Confidence 3588999999999999999999999999999998 57788999999998 799999999
Q ss_pred HHhcC
Q 028091 209 LISQR 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
|+++|
T Consensus 269 ~l~~A 273 (305)
T 2nn6_E 269 MMETG 273 (305)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 22
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-45 Score=309.16 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=163.8
Q ss_pred CCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccC
Q 028091 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (214)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (214)
+++++|+|||+++|+|++++++| +++|||+|++|+|+|+|+|++|... +..+.|++|.+.++|+++|++...++
T Consensus 19 l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~~~~~ve~~~~~~~~~~- 92 (305)
T 2wp8_A 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQ--PYEDRPFEGLFVISTEISPMAGSQFE- 92 (305)
T ss_dssp HTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC---CCSSCTTCCEEEEEECCC---------
T ss_pred HhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccC--CcccCCCCcEEEEEEEECCCCCcccc-
Confidence 36899999999999999999999 7999999999999999999987543 33356889999999999999877653
Q ss_pred CCCCC-cchHHHHHHHHHHHH--HhhccCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCC-------
Q 028091 85 KPKGD-RRSTEISLVIRQTME--ACILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (214)
Q Consensus 85 ~~~~~-~~~~~l~~~l~~~l~--~~i~~~~~---p~---~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp------- 148 (214)
.|+++ +++.+++++|+|+|+ .+++++.+ |+ |.|+|+++||++|||+++|+++|+++||+|+++|
T Consensus 93 ~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~ 172 (305)
T 2wp8_A 93 NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE 172 (305)
T ss_dssp --------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS
T ss_pred CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 35666 888899999999999 56888765 54 7899999999999999999999999999999999
Q ss_pred ----------------CCCceEEEEEEeeC--------------CeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEe
Q 028091 149 ----------------MRDIVTSCSAGYLN--------------STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVC 198 (214)
Q Consensus 149 ----------------~~~~~~~vt~~~~~--------------~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~ 198 (214)
|++.|+++|+|+++ +.+++||+.+||..+++.++|+ ++..|+|+.+++.
T Consensus 173 ~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va-~~~~g~i~~l~~~ 251 (305)
T 2wp8_A 173 QIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVT-LNKNREVVQVSKA 251 (305)
T ss_dssp SCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEE-ECTTSEEEEEEEE
T ss_pred ceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEE-EcCCCcEEEEEec
Confidence 77899999999997 7899999999999999999998 4888999999999
Q ss_pred e--ccCHHHHHHHHhcC
Q 028091 199 L--KFSSSFFSLLISQR 213 (214)
Q Consensus 199 G--~~~~~~~~~~~~~~ 213 (214)
| .++.+++.+|+++|
T Consensus 252 g~~~~~~~~l~~~l~~A 268 (305)
T 2wp8_A 252 GGLPMDALTLMKCCHEA 268 (305)
T ss_dssp EEEEECHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 8 69999999999876
No 23
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.2e-44 Score=312.20 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=181.6
Q ss_pred CCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccC
Q 028091 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (214)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (214)
+++++|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++|...+ ..++|++|+|.++|+++|+++++++
T Consensus 35 L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p--~~~~~~~g~l~~~v~~~p~a~~~~~- 108 (358)
T 2nn6_A 35 IEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSP--KLNRATEGILFFNLELSQMAAPAFE- 108 (358)
T ss_dssp HHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECC--CSTTTTSCCEEEEEEECTTTCSSCC-
T ss_pred HhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCC--cccCCCCcEEEEEEEecCCcccccc-
Confidence 35899999999999999999999 89999999999999999999876443 3356889999999999999988754
Q ss_pred CCCCCcchHHHHHHHHHHHHHhh--ccCCC------CCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCC--------
Q 028091 85 KPKGDRRSTEISLVIRQTMEACI--LTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (214)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i--~~~~~------p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp-------- 148 (214)
.|++++++.+++++|+|+|++++ +++.+ +.|.|+|+++||++|||++||+++|+++||+++++|
T Consensus 109 ~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~ 188 (358)
T 2nn6_A 109 PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 188 (358)
T ss_dssp SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCe
Confidence 45678888999999999999964 44432 458999999999999999999999999999999999
Q ss_pred ---------------CCCceEEEEEEee--CCeEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeec--cCHHHHHHH
Q 028091 149 ---------------MRDIVTSCSAGYL--NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLK--FSSSFFSLL 209 (214)
Q Consensus 149 ---------------~~~~~~~vt~~~~--~~~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~--~~~~~~~~~ 209 (214)
++++|+++|+|++ ++.+|+||+.+||..+++.++|+ +++.|+|+++++.|. ++.+++.+|
T Consensus 189 v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va-~t~~g~I~~lqk~G~~~ls~~~l~~~ 267 (358)
T 2nn6_A 189 VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIA-MNKHREICTIQSSGGIMLLKDQVLRC 267 (358)
T ss_dssp CBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEE-EETTTEEEEEEEESCCCCCHHHHHHH
T ss_pred eEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEE-EcCCCeEEEEEeCCCCCCCHHHHHHH
Confidence 8999999999987 78999999999999999999998 688899999999985 799999999
Q ss_pred HhcC
Q 028091 210 ISQR 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+++|
T Consensus 268 l~~A 271 (358)
T 2nn6_A 268 SKIA 271 (358)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 24
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.2e-44 Score=330.39 Aligned_cols=208 Identities=23% Similarity=0.364 Sum_probs=188.8
Q ss_pred ccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-ECCccccccccC--CCCceEEEEEEeecCCCc
Q 028091 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFST 79 (214)
Q Consensus 3 ~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~~--~~~~g~l~v~v~~~~~~~ 79 (214)
++++++.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+| +||.+..++.+. .++++++.++|+++||++
T Consensus 324 ~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st 403 (726)
T 4aid_A 324 GILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSV 403 (726)
T ss_dssp HHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGG
T ss_pred HHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcc
Confidence 57789999999999999999999999999999999999999999999 799876554321 257799999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhhc-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEE
Q 028091 80 GDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (214)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~ 158 (214)
+++++++++++|+.+++++++|+|+++++ .+.||+ +|+|+++||++|||.++|++||+++||+|+||||+++++++++
T Consensus 404 ~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaavsv 482 (726)
T 4aid_A 404 GETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPY-TIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAM 482 (726)
T ss_dssp TCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCC-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEE
T ss_pred cccccCCCcchhhHHHHHHHHHHHHHhcCccccCCe-EEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEEE
Confidence 99877788999999999999999999998 588997 5999999999999999999999999999999999999999999
Q ss_pred EeeCC----eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeec---cCHHHHHHHHhcC
Q 028091 159 GYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLK---FSSSFFSLLISQR 213 (214)
Q Consensus 159 ~~~~~----~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~---~~~~~~~~~~~~~ 213 (214)
|++++ .+++||+..|+..++..|.|+ ++.++|+.+|++|+ ++.++|++|++||
T Consensus 483 Gli~~g~~~~iLlD~~~~Ed~~gd~d~~Va--~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A 542 (726)
T 4aid_A 483 GLILEQDGFAVLSDILGDEDHLGDMDFKVA--GTSEGLTSLQMDIKIAGITPAIMEQALAQA 542 (726)
T ss_dssp EEEECSSCEEEEESCCTTGGGGSSEEEEEE--EETTEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred EEEcCCCceEEEecCChhHHhcCCceEEEE--ecCCceEEEEecCCcCCcCHHHHHHHHHHH
Confidence 99964 477899999999999899987 34566999999985 5999999999986
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=326.77 Aligned_cols=208 Identities=24% Similarity=0.305 Sum_probs=186.3
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCcccc-cccc------CCCCceEEEEEEee
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQ------QMSDQALVRCEYSM 74 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~-~~~~------~~~~~g~l~v~v~~ 74 (214)
+++++++.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|++|...+ +..+ ..+++|++.++|++
T Consensus 311 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~ 390 (630)
T 3u1k_A 311 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF 390 (630)
T ss_dssp HHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEe
Confidence 3567789999999999999999999999999999999999999999999753322 1111 13678999999999
Q ss_pred cCCCcccccCCCCCCcchHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceE
Q 028091 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT 154 (214)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~ 154 (214)
+||+++++++.|.+++|+.+++++++|+|+++++ +.||+ +|+|+++||++|||.++|+++|+++||+|+||||+++++
T Consensus 391 ~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Va 468 (630)
T 3u1k_A 391 PPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 468 (630)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCE
T ss_pred cCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceE
Confidence 9999999877788899999999999999999987 56995 699999999999999999999999999999999999999
Q ss_pred EEEEEeeC------C-----eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeec---cCHHHHHHHHhcC
Q 028091 155 SCSAGYLN------S-----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLK---FSSSFFSLLISQR 213 (214)
Q Consensus 155 ~vt~~~~~------~-----~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~---~~~~~~~~~~~~~ 213 (214)
++|+|+++ + .+++||+..|+..++..|+|+ ++.+| |+.+|++|+ ++.++|++|++||
T Consensus 469 avs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va-~t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A 539 (630)
T 3u1k_A 469 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIA-GTNKG-ITALQADIKLPGIPIKIVMEAIQQA 539 (630)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEE-ECSSC-EEEEEEEECSSCBCHHHHHHHHHHH
T ss_pred EEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEE-ecCCc-eEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999997 3 699999999999999999998 56666 999999994 6999999999986
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=5.2e-44 Score=331.28 Aligned_cols=209 Identities=26% Similarity=0.388 Sum_probs=190.7
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-ECCccccccccC--CCCceEEEEEEeecCCC
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~~--~~~~g~l~v~v~~~~~~ 78 (214)
+++++++.|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+| .||.+..++.+. .++++++.++|+++||+
T Consensus 348 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~s 427 (757)
T 1e3p_A 348 ERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYS 427 (757)
T ss_dssp HHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcc
Confidence 456779999999999999999999999999999999999999999999 599876654332 45789999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhhc-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEE
Q 028091 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (214)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt 157 (214)
++++++.+.+++++.+++++++|+|+++++ .+.||+ +|+|+++||++|||+++|+++|+++||+|+||||+++++++|
T Consensus 428 t~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs 506 (757)
T 1e3p_A 428 VGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 506 (757)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCE-EEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhccccccCCE-EEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 998877778899999999999999999998 688995 599999999999999999999999999999999999999999
Q ss_pred EEee----CC----eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEeecc---CHHHHHHHHhcC
Q 028091 158 AGYL----NS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCLKF---SSSFFSLLISQR 213 (214)
Q Consensus 158 ~~~~----~~----~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~~---~~~~~~~~~~~~ 213 (214)
+|++ ++ .+++||+..|+..+++.++|+ ++.++|+++|++|++ +.++|++|++||
T Consensus 507 ~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va--~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A 571 (757)
T 1e3p_A 507 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVA--GTKEFVTALQLDTKLDGIPASVLAAALKQA 571 (757)
T ss_dssp EEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEE--ECSSSEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred EEEEecCCCCccceeEEeCCCHHHHhccCceEEEE--ecCCeEEEEEEcCCccccCHHHHHHHHHHH
Confidence 9999 43 789999999999999999998 456889999999875 999999999986
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=4.4e-43 Score=324.06 Aligned_cols=209 Identities=21% Similarity=0.329 Sum_probs=179.3
Q ss_pred cccCCCCCcCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-ECCcccccccc--CCCCceEEEEEEeecCCC
Q 028091 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (214)
Q Consensus 2 ~~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~--~~~~~g~l~v~v~~~~~~ 78 (214)
+++++++.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+| .||.+..+..+ ..++++++.++|+++||+
T Consensus 313 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~s 392 (723)
T 3cdi_A 313 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 392 (723)
T ss_dssp HHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGG
T ss_pred HHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCC
Confidence 356789999999999999999999999999999999999999999999 69976443211 135778999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhhcc-CCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEE
Q 028091 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (214)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~-~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt 157 (214)
++++++.+.+++++.+++++++|+|++++++ +.||+ +|+|+++||++|||+++|+++|+++||+|+||||+++++++|
T Consensus 393 t~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~-tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs 471 (723)
T 3cdi_A 393 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 471 (723)
T ss_dssp GTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCS-CEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCE-EEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEE
Confidence 9988766777888889999999999999986 67995 599999999999999999999999999999999999999999
Q ss_pred EEeeC-C---eEEEeCChhhhhcCCCcEEEEEcCCCCcEEEEEEee---ccCHHHHHHHHhcC
Q 028091 158 AGYLN-S---TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQVCL---KFSSSFFSLLISQR 213 (214)
Q Consensus 158 ~~~~~-~---~~l~DPt~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G---~~~~~~~~~~~~~~ 213 (214)
+|+++ + .+++||+..|+..+++.++|+ ++.+| |+++|++| +++.++|++|++||
T Consensus 472 ~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va-~t~~g-I~~lq~~gk~~~is~e~l~~~l~~A 532 (723)
T 3cdi_A 472 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GSRDG-ISALQMDIKIEGITKEIMQVALNQA 532 (723)
T ss_dssp EEEEEETTEEEEESSCCGGGGGGCSEEEEEE-ECSSC-EEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred EEEEcCCCceEEEECCChHHhhhccceeeec-ccCCc-eEEEEeCCccCCcCHHHHHHHHHHH
Confidence 99996 3 499999999999999999998 56666 99999996 47999999999986
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-44 Score=291.89 Aligned_cols=186 Identities=21% Similarity=0.300 Sum_probs=146.5
Q ss_pred CCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcccccCCCCCCcchHHH
Q 028091 16 PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95 (214)
Q Consensus 16 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~l 95 (214)
.+|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+. ..+.++++.++++ +.|+++ +++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~-~~~~~~~~~l~v~--~~p~~G-------~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHA-SKASDEAMTLDIS--YRANCG-------DNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCC--SSCCCC---------CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcc-cccCCceEEEEEE--EcCCCC-------CCCHH--HH
Confidence 479999999999999999999999999999999999987653 2345777887654 456542 22333 78
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeCChhhhh
Q 028091 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175 (214)
Q Consensus 96 ~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DPt~~Ee~ 175 (214)
+++|+|.|+++++++.||+|.|+|+++||++||++++|++||+++||+++||||+++++++++|++++.+++|||.+|+.
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEE---cCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 176 AGGPDVTVGI---LPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 176 ~~~~~~tv~~---~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
.+++.++|++ +++.++|+++|++|+++.++|.+++++|
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a 190 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLA 190 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHT
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHH
Confidence 9999999996 5567999999999999999999999987
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=254.11 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=163.4
Q ss_pred CCcceEEEECCCCC-CCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc-----cccCCCCCCcc
Q 028091 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG-----DRMRKPKGDRR 91 (214)
Q Consensus 18 e~R~i~i~~g~l~~-a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~ 91 (214)
.-|++++++|.+.+ |+|||++++|+|+|+|+|++|.+++.. +...+.|+|+..+|+.+ ..+|.++++++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-----SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC-----CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 46999999999985 999999999999999999999764421 45669999999888874 22344678889
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCh--HHHHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeC
Q 028091 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (214)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l--~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DP 169 (214)
+.+++++|+|.|++++++..+|+. +|+++||++||+. ..+++||+++||.+++|||++++.++++|++++.+++||
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~~--qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYDT--QVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCCE--EEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCce--EEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 999999999999999998877754 5789999999998 779999999999999999999999999999999999999
Q ss_pred ChhhhhcCCCcEEEEEcCCCCcEEEEEEeec-cCHHHHHHHHhcC
Q 028091 170 NYVEDSAGGPDVTVGILPTLDKVTLLQVCLK-FSSSFFSLLISQR 213 (214)
Q Consensus 170 t~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~-~~~~~~~~~~~~~ 213 (214)
|.+|++.++..++|+. +..++|+++|..|. ++.++|.++++.|
T Consensus 166 t~~E~~~s~~dl~Va~-t~~~~i~mve~~~~~~se~~~~~al~~a 209 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAG-APKSQIVMLEASAENILQQDFCHAIKVG 209 (630)
T ss_dssp CHHHHHTEEEEEEEEE-ETTTEEEEEEEEEEEECHHHHHHHHHHH
T ss_pred CHHHHhhCCceEEEEE-ccCCcEEEEECCCccCCHHHHHHHHHHH
Confidence 9999999999999985 57789999999997 8999999998754
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.96 E-value=1.9e-27 Score=213.38 Aligned_cols=188 Identities=17% Similarity=0.237 Sum_probs=152.9
Q ss_pred CCcceEEEECCCC-CCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCccc-----ccCCCCCCcc
Q 028091 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (214)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~-----~~~~~~~~~~ 91 (214)
.-|++.+++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+-..++++|....|+.+. .+|.|+++++
T Consensus 12 ~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g----~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~ 87 (549)
T 3gme_A 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEG 87 (549)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGTTCCCSCC-----CCCHH
T ss_pred CCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC----CCCccceeeeeeehhhcccCCCcCcCcCCCCChh
Confidence 3589999999886 6999999999999999999987653321 1223488888654444332 2345789999
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCh-H-HHHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeC
Q 028091 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-R-SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (214)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l-~-~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DP 169 (214)
+.+++++|+|.|++.++...+. .++|+++||+.||+. . .+++||+++||..++||+++.+.+|++|++++.+++||
T Consensus 88 ~~l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnP 165 (549)
T 3gme_A 88 ETLIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNP 165 (549)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESC
T ss_pred hhHHHHHhCCccccccccCCcc--cEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECC
Confidence 9999999999999976665433 688899999999865 3 47799999999999999999999999999999999999
Q ss_pred ChhhhhcCCCcEEEEEcCCCCcEEEEEEee-ccCHHHHHHHHhcC
Q 028091 170 NYVEDSAGGPDVTVGILPTLDKVTLLQVCL-KFSSSFFSLLISQR 213 (214)
Q Consensus 170 t~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G-~~~~~~~~~~~~~~ 213 (214)
|.+|++.++..++|+ .+.. .|++++..| .++.+++.++++.|
T Consensus 166 t~~e~~~s~~dl~va-~t~~-~i~mve~e~~~~se~~~~~al~~a 208 (549)
T 3gme_A 166 TQDELKESKLDLVVA-GTEA-AVLMVESEAELLSEDQMLGAVVFG 208 (549)
T ss_dssp CTTTTTTCSBCEEEE-ECSS-CEEEEEEEEEEECHHHHHHHHHHH
T ss_pred CHHHHhhCceEEEEE-ecCC-eEEEEEccCCCCCHHHHHHHHHHH
Confidence 999999999999998 3444 599999987 58999999998754
No 31
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.96 E-value=2.1e-27 Score=219.67 Aligned_cols=186 Identities=17% Similarity=0.246 Sum_probs=153.8
Q ss_pred cceEEEECCC-CCCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCccc-----ccCCCCCCcchH
Q 028091 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRRST 93 (214)
Q Consensus 20 R~i~i~~g~l-~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~-----~~~~~~~~~~~~ 93 (214)
|++.+++|.+ .+|+||+++++|+|+|+|+|+++.+++.. .+-..++|+|....++.+. .++.|++++++.
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~----~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC----CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 5999999988 58999999999999999999987543211 1334688888765455443 234688999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCh-HH-HHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeCCh
Q 028091 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-RS-ACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171 (214)
Q Consensus 94 ~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l-~~-a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DPt~ 171 (214)
+++++|+|.|+++++... +|.++|+++||+.||+. .| ++++|+++||..++||+.+.+.+|++|++++.+++|||.
T Consensus 96 l~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccC--cceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 999999999999755442 36899999999999996 55 999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcEEEEEcCCCCcEEEEEEeec-cCHHHHHHHHhcC
Q 028091 172 VEDSAGGPDVTVGILPTLDKVTLLQVCLK-FSSSFFSLLISQR 213 (214)
Q Consensus 172 ~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~-~~~~~~~~~~~~~ 213 (214)
+|++.++..++|+. +...+++++..|. ++.+++.++++.|
T Consensus 174 ~e~~~s~~~lvvag--t~~~i~mve~~~~~~se~~~~~al~~a 214 (723)
T 3cdi_A 174 DELKESKLDLVVAG--TEAAVLMVESEAQLLSEDQMLGAVVFG 214 (723)
T ss_dssp TGGGGCSEEEEEEE--CSSCEEEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHhCCceEEEEc--cCCEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 99999999999983 4455999998876 8999999998754
No 32
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.96 E-value=4.1e-27 Score=216.92 Aligned_cols=188 Identities=20% Similarity=0.251 Sum_probs=156.6
Q ss_pred CCcceEEEECCCC-CCCeeEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc-----cccCCCCCCcc
Q 028091 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG-----DRMRKPKGDRR 91 (214)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~ 91 (214)
.-|++.+++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+-..+.++|....|+.+ ..+|.|+++.+
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g----~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG----QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC----CCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 4699999999886 6999999999999999999987653321 123458888874333332 22345889999
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCh-H-HHHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeC
Q 028091 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-R-SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (214)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l-~-~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DP 169 (214)
+.+++++|+|.|+++++...+ +.++|+++||+.||+. . .+++||+++||..++||+++.+.+|++|++++.+++||
T Consensus 102 ~~li~RlIdR~lRplf~~~~~--~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vldP 179 (726)
T 4aid_A 102 ETLVSRLIDRPIRPLFVKGFK--NEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHHGGGBCTTCC--SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEESC
T ss_pred hhhHHHHhCCccccccccCCc--cceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEECC
Confidence 999999999999998776554 3688899999999874 3 56999999999999999999999999999999999999
Q ss_pred ChhhhhcCCCcEEEEEcCCCCcEEEEEEeec-cCHHHHHHHHhcC
Q 028091 170 NYVEDSAGGPDVTVGILPTLDKVTLLQVCLK-FSSSFFSLLISQR 213 (214)
Q Consensus 170 t~~Ee~~~~~~~tv~~~~~~~~i~~~~~~G~-~~~~~~~~~~~~~ 213 (214)
|.+|++.++..++|+ ++..+ |++++..|+ ++.++|.++++.|
T Consensus 180 t~~E~~~s~~dl~va-~t~~~-i~mve~~~~~~se~~~~~al~~a 222 (726)
T 4aid_A 180 TLDEMKESKMDLVVA-GTADA-VMMVESEIQELSEEIVLGGVNFA 222 (726)
T ss_dssp CHHHHHTCSEEEEEE-ECSSC-EEEEEEEESSBCHHHHHHHHHHH
T ss_pred CHHHHhhCceeEEEE-EeCCe-EEEEEccCCCCCHHHHHHHHHHH
Confidence 999999999999998 45554 999998875 9999999998754
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.95 E-value=1.3e-26 Score=215.06 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=157.2
Q ss_pred CcceEEEECCC-CCCCeeEEEEe-CCeEEEEEEECCccccccccCCCCceEEEEEEeecCCCcc-----cccCCCCCCcc
Q 028091 19 MRQLRAEIGNV-AKADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG-----DRMRKPKGDRR 91 (214)
Q Consensus 19 ~R~i~i~~g~l-~~a~GSa~v~~-G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~ 91 (214)
-|++.+++|.+ .+|+||+++++ |+|+|+|+|++|.+++... +...|+|+|....|+.+ ..+|.|+++.+
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~----df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQL----DFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTC----SSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCC----CCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 48999999998 58999999999 9999999999986653322 33458999965544432 23456889999
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCh--HHHHHHHHHHHHHhCCCCCCCceEEEEEEeeCCeEEEeC
Q 028091 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (214)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l--~~a~~~A~~~AL~~~gIp~~~~~~~vt~~~~~~~~l~DP 169 (214)
+++++++|+|.|++.++...+ ..++|+++||+.||+. ..+++||+++||.+++||+.+.+.+|++|++++.+++||
T Consensus 112 e~l~~RlIdR~LRplfp~~~~--~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGLR--NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTBC--EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCCC--CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 999999999999996554332 3699999999999975 889999999999999999999999999999999999999
Q ss_pred ChhhhhcCCCcEEEEEcCC----CCcEEEEEE-------------eeccCHHHHHHHHhcC
Q 028091 170 NYVEDSAGGPDVTVGILPT----LDKVTLLQV-------------CLKFSSSFFSLLISQR 213 (214)
Q Consensus 170 t~~Ee~~~~~~~tv~~~~~----~~~i~~~~~-------------~G~~~~~~~~~~~~~~ 213 (214)
|.+|++.++..++|+. +. .+.|++++. .+.++.++|.++++.|
T Consensus 190 t~~e~~~s~~dl~va~-t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a 249 (757)
T 1e3p_A 190 THTELEDAVFDMVVAG-RVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAA 249 (757)
T ss_dssp CHHHHTTEEEEEEEEE-EECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred CHHHHhcCceeEEEEe-ccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHH
Confidence 9999999998999984 42 677999999 3468999999998754
No 34
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=24.38 E-value=1.1e+02 Score=20.00 Aligned_cols=28 Identities=4% Similarity=-0.104 Sum_probs=22.0
Q ss_pred EcCCCCcEEEEEEeeccCHHHHHHHHhcC
Q 028091 185 ILPTLDKVTLLQVCLKFSSSFFSLLISQR 213 (214)
Q Consensus 185 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~~ 213 (214)
+++.+|+++... .|..+.+++.+.+++.
T Consensus 110 lid~~G~i~~~~-~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 110 FIDKEGKLVKTH-PGFMEKDAILQTLKEL 137 (138)
T ss_dssp EECTTCCEEEEE-ESCCCHHHHHHHHHHC
T ss_pred EECCCCcEEEee-cCCCcHHHHHHHHHhh
Confidence 358899998854 4888999999988763
No 35
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=23.47 E-value=1e+02 Score=20.23 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=20.9
Q ss_pred EcCCCCcEEEEEEeeccCHHHHHHHHhc
Q 028091 185 ILPTLDKVTLLQVCLKFSSSFFSLLISQ 212 (214)
Q Consensus 185 ~~~~~~~i~~~~~~G~~~~~~~~~~~~~ 212 (214)
+++.+|++. ...|..+.+++.+.+++
T Consensus 107 ~id~~g~i~--~~~g~~~~~~l~~~l~~ 132 (136)
T 1zzo_A 107 FVDPHGNVD--VVRGRMSQDELTRRVTA 132 (136)
T ss_dssp EECTTCCEE--EEESCCCHHHHHHHHHH
T ss_pred EECCCCCEE--EEecCCCHHHHHHHHHH
Confidence 348889988 67788899999888864
No 36
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=20.41 E-value=89 Score=27.31 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCChHHHHHHHHHHH
Q 028091 95 ISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLA 141 (214)
Q Consensus 95 l~~~l~~~l~~~i~~~~~p~~~i~i~v~Vl~~dG~l~~a~~~A~~~A 141 (214)
+...+++.++..+ |...|.+ ++..||+..-|++.|+++.
T Consensus 424 f~~~~~~~l~~l~-----~~~~v~l---~~a~DGSg~GAAliAa~a~ 462 (470)
T 3f9m_A 424 FKERFHASVRRLT-----PSCEITF---IESEEGSGRGAALVSAVAC 462 (470)
T ss_dssp HHHHHHHHHHHHC-----TTEEEEE---EECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-----CCCeEEE---EEcCCCcHHHHHHHHHHHH
Confidence 3344555554432 5444433 4789999999999888754
No 37
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=20.14 E-value=1.5e+02 Score=19.71 Aligned_cols=26 Identities=4% Similarity=-0.022 Sum_probs=20.7
Q ss_pred EcCCCCcEEEEEEeeccCHHHHHHHHh
Q 028091 185 ILPTLDKVTLLQVCLKFSSSFFSLLIS 211 (214)
Q Consensus 185 ~~~~~~~i~~~~~~G~~~~~~~~~~~~ 211 (214)
+++.+|+++. ...|..+.+++++.++
T Consensus 120 lid~~G~i~~-~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 120 LLNEKGEIEK-TKIGPMTAEQLKEWTE 145 (145)
T ss_dssp EECTTCCEEE-EEESCCCHHHHHHHHC
T ss_pred EEcCCCcEEE-EEcCCcCHHHHHHhhC
Confidence 3588999987 4568889999998874
No 38
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=20.06 E-value=28 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=22.6
Q ss_pred EcCCCCcEEE-EEEeeccCHHHHHHHHhcCC
Q 028091 185 ILPTLDKVTL-LQVCLKFSSSFFSLLISQRP 214 (214)
Q Consensus 185 ~~~~~~~i~~-~~~~G~~~~~~~~~~~~~~~ 214 (214)
+++.+|+++. ....|..+.++|++.+++++
T Consensus 97 ~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 97 FFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp EECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred EECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence 3578888863 34668889999999998764
Done!