Query 028092
Match_columns 214
No_of_seqs 177 out of 1060
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 5.3E-61 1.2E-65 417.0 22.1 214 1-214 85-301 (301)
2 PLN02154 carbonic anhydrase 100.0 1.1E-57 2.5E-62 394.0 22.4 210 1-214 79-290 (290)
3 PLN00416 carbonate dehydratase 100.0 5.1E-56 1.1E-60 381.4 21.9 197 1-197 52-252 (258)
4 PLN03014 carbonic anhydrase 100.0 1.1E-55 2.4E-60 388.4 21.6 207 1-207 132-341 (347)
5 cd00884 beta_CA_cladeB Carboni 100.0 1.8E-55 3.9E-60 363.9 20.7 187 4-190 1-190 (190)
6 PLN03019 carbonic anhydrase 100.0 3.2E-55 6.9E-60 383.7 21.1 198 1-199 127-327 (330)
7 cd00883 beta_CA_cladeA Carboni 100.0 6.1E-55 1.3E-59 358.8 20.0 179 6-190 2-182 (182)
8 PRK10437 carbonic anhydrase; P 100.0 3.9E-54 8.5E-59 362.1 21.6 191 1-197 7-198 (220)
9 COG0288 CynT Carbonic anhydras 100.0 3.8E-52 8.2E-57 347.8 18.3 194 1-198 7-203 (207)
10 PRK15219 carbonic anhydrase; P 100.0 8.4E-51 1.8E-55 347.0 19.8 180 1-190 60-244 (245)
11 cd03378 beta_CA_cladeC Carboni 100.0 1.6E-46 3.5E-51 300.5 16.3 142 2-190 9-154 (154)
12 PF00484 Pro_CA: Carbonic anhy 100.0 3.4E-46 7.3E-51 298.0 16.8 151 31-187 1-153 (153)
13 cd00382 beta_CA Carbonic anhyd 100.0 3.1E-44 6.7E-49 276.6 15.6 119 27-190 1-119 (119)
14 cd03379 beta_CA_cladeD Carboni 100.0 3.9E-41 8.4E-46 266.7 12.7 141 27-190 1-142 (142)
15 KOG1578 Predicted carbonic anh 100.0 4E-41 8.7E-46 285.8 11.5 209 1-214 66-276 (276)
16 KOG1578 Predicted carbonic anh 98.6 1.7E-09 3.7E-14 92.9 -4.4 187 1-190 3-249 (276)
17 COG1254 AcyP Acylphosphatases 62.7 6.6 0.00014 28.8 2.3 23 172-194 29-51 (92)
18 TIGR02742 TrbC_Ftype type-F co 55.8 26 0.00057 27.3 4.7 52 16-85 60-111 (130)
19 PF10070 DUF2309: Uncharacteri 53.7 35 0.00077 34.4 6.3 40 157-196 540-585 (788)
20 PF05952 ComX: Bacillus compet 53.1 18 0.00038 24.3 2.8 24 155-178 6-29 (57)
21 PF04019 DUF359: Protein of un 52.5 1E+02 0.0023 23.6 7.6 80 22-108 5-84 (121)
22 PF00355 Rieske: Rieske [2Fe-2 51.8 6.4 0.00014 28.0 0.6 16 174-189 65-80 (97)
23 PRK11181 23S rRNA (guanosine-2 47.4 64 0.0014 27.5 6.3 75 16-99 54-133 (244)
24 PRK11440 putative hydrolase; P 47.0 43 0.00094 26.9 5.0 47 48-103 91-137 (188)
25 PF08184 Cuticle_2: Cuticle pr 44.7 11 0.00024 24.3 0.8 13 176-188 7-19 (59)
26 cd03528 Rieske_RO_ferredoxin R 43.2 9.4 0.0002 27.2 0.4 15 174-188 61-75 (98)
27 PF00009 GTP_EFTU: Elongation 40.6 15 0.00033 29.4 1.3 17 86-102 2-18 (188)
28 PRK14432 acylphosphatase; Prov 40.3 37 0.0008 24.7 3.2 19 173-191 28-46 (93)
29 cd03478 Rieske_AIFL_N AIFL (ap 40.2 9.5 0.00021 27.2 0.0 15 174-188 60-74 (95)
30 cd03548 Rieske_RO_Alpha_OMO_CA 40.1 16 0.00035 28.2 1.3 17 174-190 77-93 (136)
31 cd01891 TypA_BipA TypA (tyrosi 38.8 19 0.00042 28.8 1.7 14 87-100 2-15 (194)
32 COG1116 TauB ABC-type nitrate/ 37.8 19 0.00042 31.1 1.6 16 87-102 29-44 (248)
33 TIGR02377 MocE_fam_FeS Rieske 37.2 14 0.00031 26.9 0.6 15 174-188 63-77 (101)
34 PRK14423 acylphosphatase; Prov 36.2 57 0.0012 23.6 3.6 21 172-192 30-50 (92)
35 PF09905 DUF2132: Uncharacteri 36.2 41 0.00089 23.0 2.6 22 149-170 40-61 (64)
36 PF00857 Isochorismatase: Isoc 35.5 1.1E+02 0.0024 23.7 5.6 45 51-104 85-129 (174)
37 cd03529 Rieske_NirD Assimilato 35.3 14 0.00029 27.0 0.2 15 174-188 67-81 (103)
38 TIGR02378 nirD_assim_sml nitri 35.2 15 0.00032 26.8 0.4 15 174-188 68-82 (105)
39 TIGR00186 rRNA_methyl_3 rRNA m 35.2 1.7E+02 0.0037 24.7 7.0 72 16-96 49-125 (237)
40 PF07859 Abhydrolase_3: alpha/ 32.7 34 0.00075 27.3 2.2 33 73-105 51-88 (211)
41 COG2146 {NirD} Ferredoxin subu 32.5 19 0.00041 26.8 0.6 15 174-188 67-81 (106)
42 PRK14429 acylphosphatase; Prov 32.1 68 0.0015 23.0 3.4 19 173-191 28-46 (90)
43 PRK14430 acylphosphatase; Prov 31.9 36 0.00078 24.7 2.0 20 173-192 30-49 (92)
44 PRK09511 nirD nitrite reductas 31.9 17 0.00037 27.0 0.2 15 174-188 71-85 (108)
45 cd01015 CSHase N-carbamoylsarc 31.7 96 0.0021 24.6 4.7 40 48-96 84-123 (179)
46 cd03474 Rieske_T4moC Toluene-4 31.6 19 0.00042 26.2 0.5 14 174-187 62-75 (108)
47 PRK09965 3-phenylpropionate di 31.6 18 0.00039 26.5 0.4 15 174-188 63-77 (106)
48 PRK14440 acylphosphatase; Prov 31.0 39 0.00086 24.3 2.1 22 172-193 28-49 (90)
49 cd03530 Rieske_NirD_small_Baci 31.0 16 0.00034 26.2 -0.1 15 174-188 62-76 (98)
50 cd03473 Rieske_CMP_Neu5Ac_hydr 30.5 19 0.00041 27.2 0.3 15 174-188 71-85 (107)
51 PRK14445 acylphosphatase; Prov 30.4 50 0.0011 23.7 2.5 20 172-191 29-48 (91)
52 cd01878 HflX HflX subfamily. 30.1 34 0.00073 27.5 1.8 17 85-101 39-55 (204)
53 PF12697 Abhydrolase_6: Alpha/ 29.9 58 0.0012 25.0 3.0 32 74-105 52-83 (228)
54 cd01890 LepA LepA subfamily. 29.6 29 0.00063 26.9 1.2 13 88-100 1-13 (179)
55 cd01013 isochorismatase Isocho 29.5 1.2E+02 0.0026 24.9 4.9 44 50-102 114-157 (203)
56 PRK03592 haloalkane dehalogena 29.3 57 0.0012 27.6 3.1 31 76-106 81-111 (295)
57 PRK14436 acylphosphatase; Prov 29.3 80 0.0017 22.7 3.5 21 172-192 29-49 (91)
58 TIGR01250 pro_imino_pep_2 prol 29.1 64 0.0014 26.1 3.3 31 76-106 84-114 (288)
59 PRK14434 acylphosphatase; Prov 29.0 87 0.0019 22.6 3.6 22 172-193 27-49 (92)
60 PF00708 Acylphosphatase: Acyl 28.6 82 0.0018 22.3 3.4 20 173-192 30-49 (91)
61 PRK14449 acylphosphatase; Prov 28.6 86 0.0019 22.4 3.5 21 172-192 28-48 (90)
62 cd01887 IF2_eIF5B IF2/eIF5B (i 28.4 35 0.00075 26.0 1.5 14 88-101 1-14 (168)
63 PRK14422 acylphosphatase; Prov 28.2 79 0.0017 22.9 3.3 21 172-192 31-51 (93)
64 PRK14444 acylphosphatase; Prov 28.2 81 0.0018 22.8 3.3 20 172-191 29-48 (92)
65 PRK00075 cbiD cobalt-precorrin 27.0 4.9E+02 0.011 23.8 9.7 27 60-97 230-256 (361)
66 PLN02824 hydrolase, alpha/beta 27.0 65 0.0014 27.2 3.1 29 77-105 91-119 (294)
67 cd03467 Rieske Rieske domain; 26.9 23 0.00049 25.2 0.2 15 174-188 62-76 (98)
68 cd01012 YcaC_related YcaC rela 26.8 1.2E+02 0.0025 23.7 4.3 46 50-104 60-105 (157)
69 cd04321 ScAspRS_mt_like_N ScAs 26.7 72 0.0016 22.4 2.8 20 173-192 2-23 (86)
70 PRK14451 acylphosphatase; Prov 26.6 51 0.0011 23.7 2.0 20 173-192 29-48 (89)
71 PRK14448 acylphosphatase; Prov 26.5 50 0.0011 23.8 1.9 20 173-192 28-47 (90)
72 cd04160 Arfrp1 Arfrp1 subfamil 26.5 36 0.00078 25.9 1.3 14 89-102 1-14 (167)
73 PF01707 Peptidase_C9: Peptida 26.4 19 0.00041 30.0 -0.3 33 155-193 137-170 (202)
74 PRK14441 acylphosphatase; Prov 26.3 70 0.0015 23.1 2.7 21 172-192 30-50 (93)
75 cd04167 Snu114p Snu114p subfam 26.3 36 0.00079 27.8 1.3 15 88-102 1-15 (213)
76 cd04169 RF3 RF3 subfamily. Pe 26.0 42 0.00092 28.9 1.7 16 87-102 2-17 (267)
77 COG2885 OmpA Outer membrane pr 26.0 80 0.0017 25.5 3.3 28 75-102 102-129 (190)
78 PRK14426 acylphosphatase; Prov 25.4 59 0.0013 23.5 2.1 20 172-191 29-48 (92)
79 PRK14433 acylphosphatase; Prov 25.1 99 0.0021 22.1 3.3 21 172-192 26-46 (87)
80 PF02983 Pro_Al_protease: Alph 24.9 1.5E+02 0.0032 19.7 3.9 21 172-192 22-42 (62)
81 PRK01160 hypothetical protein; 24.8 3.2E+02 0.007 22.4 6.6 82 20-108 52-137 (178)
82 COG4707 Uncharacterized protei 24.7 62 0.0013 24.0 2.1 26 153-183 49-76 (107)
83 PTZ00331 alpha/beta hydrolase; 24.7 1.8E+02 0.0039 24.0 5.3 63 38-103 97-162 (212)
84 TIGR03614 RutB pyrimidine util 24.5 1.6E+02 0.0034 24.6 4.9 47 49-104 122-168 (226)
85 PRK14421 acylphosphatase; Prov 24.5 1.1E+02 0.0023 22.6 3.4 20 173-192 30-49 (99)
86 PRK14420 acylphosphatase; Prov 24.4 64 0.0014 23.1 2.2 20 173-192 28-47 (91)
87 TIGR00040 yfcE phosphoesterase 24.3 2.5E+02 0.0054 21.5 5.8 66 27-100 51-119 (158)
88 TIGR00312 cbiD cobalamin biosy 24.2 5.5E+02 0.012 23.4 9.1 27 60-97 217-243 (347)
89 cd01897 NOG NOG1 is a nucleola 24.0 48 0.001 25.3 1.5 15 88-102 1-15 (168)
90 KOG4387 Ornithine decarboxylas 23.6 81 0.0018 26.1 2.8 24 73-96 120-143 (191)
91 KOG0025 Zn2+-binding dehydroge 23.6 1.3E+02 0.0028 27.2 4.2 42 44-95 153-194 (354)
92 PRK14437 acylphosphatase; Prov 23.4 1E+02 0.0022 23.2 3.1 20 173-192 49-68 (109)
93 PRK14427 acylphosphatase; Prov 23.3 1.3E+02 0.0028 21.8 3.6 21 172-192 31-51 (94)
94 PF01764 Lipase_3: Lipase (cla 23.3 1.1E+02 0.0024 22.6 3.5 30 76-105 52-81 (140)
95 TIGR03100 hydr1_PEP hydrolase, 23.1 94 0.002 26.4 3.3 30 74-104 85-115 (274)
96 PRK14425 acylphosphatase; Prov 23.1 71 0.0015 23.2 2.2 19 173-191 32-50 (94)
97 PRK14438 acylphosphatase; Prov 23.0 1.3E+02 0.0027 21.6 3.5 20 172-191 28-47 (91)
98 TIGR03736 PRTRC_ThiF PRTRC sys 22.9 1.5E+02 0.0032 25.5 4.4 32 160-191 211-242 (244)
99 PF01368 DHH: DHH family; Int 22.8 67 0.0015 24.0 2.1 20 86-105 4-25 (145)
100 PF02100 ODC_AZ: Ornithine dec 22.4 77 0.0017 23.7 2.3 30 73-102 42-71 (108)
101 PF01888 CbiD: CbiD; InterPro 22.3 53 0.0011 28.7 1.6 33 51-96 220-252 (261)
102 PRK14443 acylphosphatase; Prov 21.9 83 0.0018 22.9 2.3 21 172-192 29-49 (93)
103 PF00561 Abhydrolase_1: alpha/ 21.8 87 0.0019 24.5 2.7 31 72-102 28-58 (230)
104 cd03531 Rieske_RO_Alpha_KSH Th 21.6 36 0.00078 25.4 0.4 16 174-190 63-78 (115)
105 PRK14446 acylphosphatase; Prov 21.5 99 0.0022 22.2 2.7 22 171-192 26-47 (88)
106 KOG0922 DEAH-box RNA helicase 21.3 73 0.0016 31.5 2.4 23 77-101 58-80 (674)
107 PRK14435 acylphosphatase; Prov 21.2 77 0.0017 22.8 2.1 20 173-192 28-47 (90)
108 PF13580 SIS_2: SIS domain; PD 21.2 1.3E+02 0.0029 22.9 3.5 39 47-94 99-138 (138)
109 PRK14424 acylphosphatase; Prov 21.0 77 0.0017 23.1 2.0 20 173-192 33-52 (94)
110 PF08477 Miro: Miro-like prote 21.0 61 0.0013 23.2 1.5 12 89-100 1-12 (119)
111 cd01014 nicotinamidase_related 20.5 2.3E+02 0.005 21.9 4.8 45 50-103 71-115 (155)
112 PRK14428 acylphosphatase; Prov 20.5 1.5E+02 0.0033 21.7 3.5 21 172-192 33-53 (97)
113 KOG1420 Ca2+-activated K+ chan 20.1 55 0.0012 32.1 1.3 18 86-103 356-373 (1103)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=5.3e-61 Score=416.99 Aligned_cols=214 Identities=72% Similarity=1.238 Sum_probs=189.9
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEF 80 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asley 80 (214)
+++||+.|+...+.+++++|+.++.||+|+++||+||||||+|+.+||++|||+||+||+||+|+|++.+..++.+||||
T Consensus 85 L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEY 164 (301)
T PLN03006 85 MKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEF 164 (301)
T ss_pred HHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999987655679999999
Q ss_pred HHHhcCCceEEEEccCCchhhHHhhhcCCCCC-hhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHh
Q 028092 81 AVNSVKVENILVIGHSRCGGIHALMSMQDEED-PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLL 159 (214)
Q Consensus 81 Av~~L~v~~IvV~GHt~CGav~aa~~~~~~~~-~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~ 159 (214)
||.+|+|++|||||||+||||+|+++....+. .++|+.|+..+.+++...........+++++..++++||++|+++|+
T Consensus 165 AV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~ 244 (301)
T PLN03006 165 SVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLL 244 (301)
T ss_pred HHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987544332 46899999988887665433222345667777788899999999999
Q ss_pred hChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCcc--cccccccccccccC
Q 028092 160 TYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLK--ESKEVAFRNRSFWS 214 (214)
Q Consensus 160 ~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 214 (214)
++|+|++++++|+|.||||+||+.||+++.|..+|..++.+ +..+++.++|+||+
T Consensus 245 ~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 245 GYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccccccccCCceeeecccccC
Confidence 99999999999999999999999999999999999766654 46799999999996
No 2
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.1e-57 Score=394.00 Aligned_cols=210 Identities=56% Similarity=1.045 Sum_probs=183.8
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEF 80 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asley 80 (214)
+++||.+|+...+.+++++|+.++.||+|+++||+||||||+|+.|||++|||+||+||+||+|++.+.++.++.+||||
T Consensus 79 Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEy 158 (290)
T PLN02154 79 MRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNGPTETNSALEF 158 (290)
T ss_pred HHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCCccchhhHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999987766789999999
Q ss_pred HHHhcCCceEEEEccCCchhhHHhhhcCCC-C-ChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHH
Q 028092 81 AVNSVKVENILVIGHSRCGGIHALMSMQDE-E-DPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNL 158 (214)
Q Consensus 81 Av~~L~v~~IvV~GHt~CGav~aa~~~~~~-~-~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L 158 (214)
||.+|+|++|||||||+||||+|+++.... + ..+++..|+..+.++........+..++++.+..++++||++|+++|
T Consensus 159 Av~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~NV~~qv~nL 238 (290)
T PLN02154 159 AVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKESIKDSVMNL 238 (290)
T ss_pred HHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875321 1 24689999987776554332212233455655667789999999999
Q ss_pred hhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCcccccccccccccccC
Q 028092 159 LTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS 214 (214)
Q Consensus 159 ~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (214)
+++|+|++++++|+|.||||+||++||+|+.++.++..-|+. ++.+++++||
T Consensus 239 ~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~~f~~~----~~~~~~~~~~ 290 (290)
T PLN02154 239 ITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSDKTNYG----FYISDREIWS 290 (290)
T ss_pred hcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccCcccCc----eeeccccccC
Confidence 999999999999999999999999999999999988766664 9999999997
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.1e-56 Score=381.36 Aligned_cols=197 Identities=53% Similarity=0.956 Sum_probs=169.1
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE 79 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle 79 (214)
+++|+.+|.+..+.+++++|+.++.+|+|+++|||||||||+|+.+||++|||+||+||+||+|++++..+ .++.+|||
T Consensus 52 Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLE 131 (258)
T PLN00416 52 IKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVE 131 (258)
T ss_pred HHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHH
Confidence 36789999888888889999999999999999999999999999999999999999999999999876422 35889999
Q ss_pred HHHHhcCCceEEEEccCCchhhHHhhhcCCC---CChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHH
Q 028092 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDE---EDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLL 156 (214)
Q Consensus 80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~---~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~ 156 (214)
||+.+|||++|||||||+||||+|+++.... ...+++..|+..+.+++..........++.+.+..++++||++|++
T Consensus 132 yAv~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~ 211 (258)
T PLN00416 132 YAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLG 211 (258)
T ss_pred HHHHHhCCCEEEEecCCCchHHHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864222 1135799999999888765443333445555555677899999999
Q ss_pred HHhhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCC
Q 028092 157 NLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGS 197 (214)
Q Consensus 157 ~L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~ 197 (214)
+|+++|+|++++++|+|.||||+||++||+|+.++.++...
T Consensus 212 ~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG~v~~~~~~~~~~ 252 (258)
T PLN00416 212 NLLSYPFVRAEVVKNTLAIRGGHYNFVKGTFDLWELDFKTT 252 (258)
T ss_pred HHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccCcCCC
Confidence 99999999999999999999999999999999988875433
No 4
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.1e-55 Score=388.41 Aligned_cols=207 Identities=49% Similarity=0.890 Sum_probs=181.6
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE 79 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle 79 (214)
+++||.+|++..+.+++++|+.++.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++... .++.++||
T Consensus 132 L~~GN~rF~~~~~~~~~~~~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLE 211 (347)
T PLN03014 132 IKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIE 211 (347)
T ss_pred HHHHHHHHHhhccccCHHHHHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHH
Confidence 36899999998899999999999999999999999999999999999999999999999999999876322 25789999
Q ss_pred HHHHhcCCceEEEEccCCchhhHHhhhcCCCC--ChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHH
Q 028092 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEE--DPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLN 157 (214)
Q Consensus 80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~--~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~ 157 (214)
|||.+|+|++|||||||+||||+|+++....+ ..++|..|+..+.+++..........++.+++..++++||++||++
T Consensus 212 YAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~n 291 (347)
T PLN03014 212 YAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLAN 291 (347)
T ss_pred HHHHHhCCCEEEEeCCCCchHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754322 2468999999999998765554444566777667788999999999
Q ss_pred HhhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCccccccccc
Q 028092 158 LLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAF 207 (214)
Q Consensus 158 L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~~~~~~~~~ 207 (214)
|+++|+|++++++|+|.||||+||++||+|+.++.++....+.--+++++
T Consensus 292 L~t~P~V~eav~~G~L~I~G~~YDi~TG~V~~l~~~~~~~~~~~~~~~~~ 341 (347)
T PLN03014 292 LLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEFGLSETSSVKDVAT 341 (347)
T ss_pred HHhCHHHHHHHHcCCcEEEEEEEECCCceEEEeccccccCCccccchhHh
Confidence 99999999999999999999999999999999999988877765555554
No 5
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.8e-55 Score=363.88 Aligned_cols=187 Identities=48% Similarity=0.754 Sum_probs=162.2
Q ss_pred HHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCC--CCchhHHHHHHH
Q 028092 4 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCES--GPSETNAALEFA 81 (214)
Q Consensus 4 r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~--~~~~~~asleyA 81 (214)
|+.+|++..+.+++++|+.++.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++.+. ++.++.+|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 456777777888999999999999999999999999999999999999999999999999998754 345799999999
Q ss_pred HHhcCCceEEEEccCCchhhHHhhhcCC-CCChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHhh
Q 028092 82 VNSVKVENILVIGHSRCGGIHALMSMQD-EEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLT 160 (214)
Q Consensus 82 v~~L~v~~IvV~GHt~CGav~aa~~~~~-~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 160 (214)
+.+|++++|||||||+||||+|+++... ....+++..|+..+.++...........+..+..+.+++.||.+|+++|++
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDLLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987543 112468999999999987765443333344555667889999999999999
Q ss_pred ChhHHHHHHcCceEEEEEEEEcCCCeEEEe
Q 028092 161 YPWIEEKVRAGALSLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 161 ~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~ 190 (214)
+|+|++++++|+|+||||+||++||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999853
No 6
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3.2e-55 Score=383.75 Aligned_cols=198 Identities=50% Similarity=0.916 Sum_probs=171.1
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE 79 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle 79 (214)
+++||.+|+...+.+++++|+.++.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.+. .++.+|||
T Consensus 127 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIE 206 (330)
T PLN03019 127 IKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIE 206 (330)
T ss_pred HHHHHHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHH
Confidence 47899999998888999999999999999999999999999999999999999999999999999876421 35789999
Q ss_pred HHHHhcCCceEEEEccCCchhhHHhhhcCCCC--ChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHH
Q 028092 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEE--DPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLN 157 (214)
Q Consensus 80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~--~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~ 157 (214)
|||.+|||++|||||||+||||+|+++....+ ..++|..|+..+.|++.......+..++++.+..+ +.||+.|+++
T Consensus 207 YAV~~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~-E~NV~~qv~n 285 (330)
T PLN03019 207 YAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRC-ERAVNVSLAN 285 (330)
T ss_pred HHHHHhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999998754332 24689999999999886554332334555554444 4599999999
Q ss_pred HhhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCc
Q 028092 158 LLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNL 199 (214)
Q Consensus 158 L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~ 199 (214)
|+++|+|++++++|+|.||||+||++||+|+.++.+|....+
T Consensus 286 L~t~P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~ 327 (330)
T PLN03019 286 LLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPV 327 (330)
T ss_pred HHhCHHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCC
Confidence 999999999999999999999999999999999988876654
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.1e-55 Score=358.78 Aligned_cols=179 Identities=28% Similarity=0.518 Sum_probs=155.4
Q ss_pred HhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhc
Q 028092 6 LSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 85 (214)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L 85 (214)
.+|++..+.++|++|+.++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. ++.+|||||+.+|
T Consensus 2 ~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~---~~~asleyAv~~L 78 (182)
T cd00883 2 RAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL---NCLSVLQYAVDVL 78 (182)
T ss_pred hhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc---chhhhHHHHHHhc
Confidence 4566667889999999999999999999999999999999999999999999999999998653 6899999999999
Q ss_pred CCceEEEEccCCchhhHHhhhcCCCCChhHHHHHHHhchhhHHhHHHhcCCC-ChhhhhhHHHHHHHHHHHHHHhhChhH
Q 028092 86 KVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSL-SFDHQCSHCEKESVNCSLLNLLTYPWI 164 (214)
Q Consensus 86 ~v~~IvV~GHt~CGav~aa~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~nV~~~v~~L~~~p~i 164 (214)
|+++|||||||+||||+|+++.. ..+.+.+|+..+.++.......+... +.++....++++||++|+++|+++|+|
T Consensus 79 ~v~~IvV~GHs~CGav~a~~~~~---~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i 155 (182)
T cd00883 79 KVKHIIVCGHYGCGGVKAALTGK---RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIV 155 (182)
T ss_pred CCCEEEEecCCCchHHHHHHcCC---CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999998653 23679999998888765433222222 344455677899999999999999999
Q ss_pred HHHHHc-CceEEEEEEEEcCCCeEEEe
Q 028092 165 EEKVRA-GALSLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 165 ~~~v~~-g~l~v~G~~YDi~tG~v~~~ 190 (214)
++++++ |+|.||||+||++||+|+.+
T Consensus 156 ~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 156 QDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 999999 89999999999999999864
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.9e-54 Score=362.05 Aligned_cols=191 Identities=24% Similarity=0.441 Sum_probs=168.2
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEF 80 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asley 80 (214)
+++|+.+|.+..+..++++|+.++.+|+|+++|||||||||+|+.+||++|||+||+||+||+|++.+. ++.++|||
T Consensus 7 Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~---~~~~~ley 83 (220)
T PRK10437 7 LISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL---NCLSVVQY 83 (220)
T ss_pred HHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc---chHHHHHH
Confidence 478888998877788999999999999999999999999999999999999999999999999998653 68999999
Q ss_pred HHHhcCCceEEEEccCCchhhHHhhhcCCCCChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHhh
Q 028092 81 AVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLT 160 (214)
Q Consensus 81 Av~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 160 (214)
||.+|+|++|||||||+||||+|+++... .+++..|+.++.+++..........+..+..+.+++.||++|+++|++
T Consensus 84 AV~~L~v~~IvV~GHt~CG~V~Aal~~~~---~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv~~L~~ 160 (220)
T PRK10437 84 AVDVLEVEHIIICGHYGCGGVQAAVENPE---LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH 160 (220)
T ss_pred HHHHcCCCEEEEeCCCCchHHHHHHcCCC---cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987532 367999999999887654433334445556677889999999999999
Q ss_pred ChhHHHHHHcC-ceEEEEEEEEcCCCeEEEeeccCCCC
Q 028092 161 YPWIEEKVRAG-ALSLHGGYYNFVDCTFEKWTLDYDGS 197 (214)
Q Consensus 161 ~p~i~~~v~~g-~l~v~G~~YDi~tG~v~~~~~~~~~~ 197 (214)
+|+|++++++| +|.||||+||++||+|+.++.+....
T Consensus 161 ~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 161 STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred CHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 99999999999 59999999999999999988766543
No 9
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-52 Score=347.83 Aligned_cols=194 Identities=27% Similarity=0.435 Sum_probs=161.0
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhc-CCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLA-DGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALE 79 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~-~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asle 79 (214)
+++++.+|.+..+...+++|+.+. .+|+|+++||||||||||||.+||++|||+||+|||||+|++++ .++++|||
T Consensus 7 ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~---~~~l~sle 83 (207)
T COG0288 7 LLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD---GSVLRSLE 83 (207)
T ss_pred HHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc---cchhHHHH
Confidence 367888888877778889998865 56999999999999999999999999999999999999999865 37999999
Q ss_pred HHHHhcCCceEEEEccCCchhhHHhhhcCCCCChhHHHHHHHhchhhHHhHHHhcCCCChh-hhhhHHHHHHHHHHHHHH
Q 028092 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFD-HQCSHCEKESVNCSLLNL 158 (214)
Q Consensus 80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~nV~~~v~~L 158 (214)
||+.+|||++|||||||+||||+|+++....+.. .+..|+.++.+............+.. ++.....+.||+.||++|
T Consensus 84 yAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~-~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~qv~~L 162 (207)
T COG0288 84 YAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK-PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVREQVANL 162 (207)
T ss_pred HHHHHcCCCEEEEecCCCcHHHHhcccccccccc-ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999887655433 58899987777654332221111111 344556789999999999
Q ss_pred hhChhHHHHHHcCc-eEEEEEEEEcCCCeEEEeeccCCCCC
Q 028092 159 LTYPWIEEKVRAGA-LSLHGGYYNFVDCTFEKWTLDYDGSN 198 (214)
Q Consensus 159 ~~~p~i~~~v~~g~-l~v~G~~YDi~tG~v~~~~~~~~~~~ 198 (214)
+++|.|++++..|+ |.||||+||++||+++.++.......
T Consensus 163 ~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 163 RTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred hcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 99999999988887 99999999999999998877655443
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=8.4e-51 Score=346.99 Aligned_cols=180 Identities=22% Similarity=0.300 Sum_probs=150.2
Q ss_pred ChhHHHhhhhhhhhhChHHH---HhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHY---QNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAA 77 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~---~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~as 77 (214)
+++|+.+|.+..+. ++.++ ..++.||+|+++||||||||||||.+||++|||+||+||+||++++ ++.+|
T Consensus 60 L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~------~~~~s 132 (245)
T PRK15219 60 LKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND------DLLGS 132 (245)
T ss_pred HHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc------chhhH
Confidence 36778888776554 33333 3467899999999999999999999999999999999999999975 37889
Q ss_pred HHHHHHhcCCceEEEEccCCchhhHHhhhcCCCCChhHHHHHHHhchhhHHhHHHhc-CCCChhhhhhHHHHHHHHHHHH
Q 028092 78 LEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAA-SSLSFDHQCSHCEKESVNCSLL 156 (214)
Q Consensus 78 leyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~nV~~~v~ 156 (214)
||||+.+||+++|||||||+||||+|+++... .+++..|++.++|++....... ...+..+....++++||+.|++
T Consensus 133 lEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~---~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~ 209 (245)
T PRK15219 133 MEFACAVAGAKVVLVMGHTACGAVKGAIDNVE---LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVARKNVELTIE 209 (245)
T ss_pred HHHHHHHcCCCEEEEecCCcchHHHHHHhcCC---cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987543 3579999999999876542211 1112334456678999999999
Q ss_pred HHhh-ChhHHHHHHcCceEEEEEEEEcCCCeEEEe
Q 028092 157 NLLT-YPWIEEKVRAGALSLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 157 ~L~~-~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~ 190 (214)
+|++ +|++++.+++|+|+||||+||++||+|+++
T Consensus 210 ~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 210 NIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 9986 899999999999999999999999999976
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.6e-46 Score=300.53 Aligned_cols=142 Identities=31% Similarity=0.499 Sum_probs=126.8
Q ss_pred hhHHHhhhhhhhh---hChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHH
Q 028092 2 KHRFLSFKKQKFM---ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAAL 78 (214)
Q Consensus 2 ~~r~~~~~~~~~~---~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asl 78 (214)
++++.+|.+..+. .+++.|..++++|+|+++||||||||++|+.+|+.+|||+||+||+||++++ ++++||
T Consensus 9 l~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~------~~~~sl 82 (154)
T cd03378 9 KEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD------DVLGSL 82 (154)
T ss_pred HHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh------hHHHHH
Confidence 5667777554322 2356788999999999999999999999999999999999999999999986 478999
Q ss_pred HHHHHhcCCceEEEEccCCchhhHHhhhcCCCCChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHH
Q 028092 79 EFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNL 158 (214)
Q Consensus 79 eyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L 158 (214)
|||+..||+++|||||||+||+++++ +.++||++|+++|
T Consensus 83 ~yav~~l~v~~IvV~GHt~CG~~~a~-----------------------------------------~~~~nV~~~v~~L 121 (154)
T cd03378 83 EYAVEVLGVPLVVVLGHESCGAVAAA-----------------------------------------AVRANVKATVAKL 121 (154)
T ss_pred HHHHHHhCCCEEEEEcCCCccHHHHH-----------------------------------------HHHHHHHHHHHHH
Confidence 99999999999999999999999875 2578999999999
Q ss_pred hhChhHHH-HHHcCceEEEEEEEEcCCCeEEEe
Q 028092 159 LTYPWIEE-KVRAGALSLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 159 ~~~p~i~~-~v~~g~l~v~G~~YDi~tG~v~~~ 190 (214)
+++|+|++ ++++|+|.||||+||++||+|+.+
T Consensus 122 ~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 122 RSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 99999998 999999999999999999999863
No 12
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=3.4e-46 Score=297.97 Aligned_cols=151 Identities=34% Similarity=0.613 Sum_probs=122.5
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHhhhcCCC
Q 028092 31 FMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE 110 (214)
Q Consensus 31 ~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~ 110 (214)
++||||||||++|+.+|+.+|||+||+||+||++++.+ .++++|||||+.+||+++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 68999999999999999999999999999999998764 47999999999999999999999999999998876422
Q ss_pred CChhHHHHHHHhchhhHHh-HHHhcCCC-ChhhhhhHHHHHHHHHHHHHHhhChhHHHHHHcCceEEEEEEEEcCCCeE
Q 028092 111 EDPSFIRSWVLVGKNARLN-TKAAASSL-SFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTF 187 (214)
Q Consensus 111 ~~~~~i~~~l~~~~~a~~~-~~~~~~~~-~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v 187 (214)
.++.++.|+..+.++... ..+..... ++.+. ...+++||++||++|+++|+|++++++|+|.||||+||++||+|
T Consensus 77 -~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 77 -EDGFLRDWLQKIRPALEECVDELLPSSWDFEDL-DDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp -TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHH-HHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred -ccchHHHHHHhhhhhHHHHHHHhhcccccHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 246899999988887765 22221221 22332 33479999999999999999999999999999999999999986
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.1e-44 Score=276.60 Aligned_cols=119 Identities=41% Similarity=0.728 Sum_probs=112.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHhhh
Q 028092 27 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 106 (214)
Q Consensus 27 q~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa~~ 106 (214)
|+|+++||||||||++|+.+||.+|||+||+||+||++++.+ .++++|||||+..||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~---~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD---LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc---ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH---
Confidence 799999999999999999999999999999999999999764 36999999999999999999999999999876
Q ss_pred cCCCCChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHhhChhHHHHHHcCceEEEEEEEEcCCCe
Q 028092 107 MQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCT 186 (214)
Q Consensus 107 ~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~YDi~tG~ 186 (214)
..++||++|+++|+++|+++++++++++.|||++||++||+
T Consensus 75 ---------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~ 115 (119)
T cd00382 75 ---------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGK 115 (119)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCE
Confidence 24789999999999999999999999999999999999999
Q ss_pred EEEe
Q 028092 187 FEKW 190 (214)
Q Consensus 187 v~~~ 190 (214)
++.+
T Consensus 116 v~~~ 119 (119)
T cd00382 116 LEVL 119 (119)
T ss_pred EEeC
Confidence 9864
No 14
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.9e-41 Score=266.73 Aligned_cols=141 Identities=22% Similarity=0.325 Sum_probs=112.4
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHhhh
Q 028092 27 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 106 (214)
Q Consensus 27 q~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa~~ 106 (214)
++++++||||||||++|+.+||.+|||+||+|||||+|++ ++++||+||+..||+++|+|||||+|||++++.+
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4689999999999999999999999999999999999986 4789999999999999999999999999998753
Q ss_pred cCCCCChhHHHHHHHh-chhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHhhChhHHHHHHcCceEEEEEEEEcCCC
Q 028092 107 MQDEEDPSFIRSWVLV-GKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDC 185 (214)
Q Consensus 107 ~~~~~~~~~i~~~l~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~YDi~tG 185 (214)
.+..|+.. ..+... ... ............++||++|+++|+++|+|++ +++||||+||++||
T Consensus 75 --------~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG 137 (142)
T cd03379 75 --------ELKEKMKERGIAEAY-GGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTG 137 (142)
T ss_pred --------HHHHHHHHhcCcchh-ccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCC
Confidence 24456543 211100 000 0111111123468999999999999999997 56999999999999
Q ss_pred eEEEe
Q 028092 186 TFEKW 190 (214)
Q Consensus 186 ~v~~~ 190 (214)
+++.+
T Consensus 138 ~v~~v 142 (142)
T cd03379 138 KLTEV 142 (142)
T ss_pred EEEeC
Confidence 99853
No 15
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-41 Score=285.82 Aligned_cols=209 Identities=43% Similarity=0.765 Sum_probs=183.9
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE 79 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle 79 (214)
++++|+.|+.+.+..+|..|..++.+|+|+.++|+|+||||.|+.|++++|||.|++||++|+++|.+..+ ..+.|+||
T Consensus 66 i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE 145 (276)
T KOG1578|consen 66 IGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALE 145 (276)
T ss_pred HHhhHhhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999765433 56889999
Q ss_pred HHHHhcCCceEEEEccCCchhhHHhhhcCCCCC-hhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHH
Q 028092 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEED-PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNL 158 (214)
Q Consensus 80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~-~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L 158 (214)
|||..|+|+.|+||||++|||+++++....... .+++..|+....++....++..+.+.+++++..++.+.+..++.+|
T Consensus 146 ~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l 225 (276)
T KOG1578|consen 146 YAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARL 225 (276)
T ss_pred HHHHHhccceEEEeccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988665543 4788889887777777777767778999999999999999999999
Q ss_pred hhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCcccccccccccccccC
Q 028092 159 LTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS 214 (214)
Q Consensus 159 ~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (214)
.+||++++++..|.+.+||++||+..|..+.|..| + +.-..|-...+++||
T Consensus 226 ~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld-e----kt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 226 LSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELD-E----KTVDGLKTEKRSVYS 276 (276)
T ss_pred hcChHHHHHHhhcceeeeeeeEEeccCceeEEEec-c----ccccccccccccccC
Confidence 99999999999999999999999999999999998 1 222245555666665
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.7e-09 Score=92.85 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=120.2
Q ss_pred ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEccCCCC
Q 028092 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI----------------LGFQPGEAFIVRNVANMV 64 (214)
Q Consensus 1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i----------------~~~~~GdlfViRNaGN~v 64 (214)
|+.|..+|++....+-. ..+..-++|.+..++|+|||+-|+.. +....||.|++||.||.+
T Consensus 3 i~~~~~~~~~t~~~~~~---~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKDLV---EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHHhH---HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 35566677665544333 56677889999999999999999877 667889999999999999
Q ss_pred CCCCCCC------chhHHHHHHHHHhcCCceEEEEccCCchhhHHhhhcCCC----CC---hhHHHHHHHhchhh-HH--
Q 028092 65 PPCESGP------SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE----ED---PSFIRSWVLVGKNA-RL-- 128 (214)
Q Consensus 65 ~~~~~~~------~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~----~~---~~~i~~~l~~~~~a-~~-- 128 (214)
+.....+ +--.++|+.|+......||++|||++|-+++........ .. .+.++.|+....-. +.
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 8543221 223456777888889999999999999999987665441 11 26788888643210 00
Q ss_pred ------hHHH------hcCCCChh---------hhh---hHHHHHHHHHHHHHHhhChhHH--HHHHcCceEEEE--EEE
Q 028092 129 ------NTKA------AASSLSFD---------HQC---SHCEKESVNCSLLNLLTYPWIE--EKVRAGALSLHG--GYY 180 (214)
Q Consensus 129 ------~~~~------~~~~~~~~---------~~~---~~~~~~nV~~~v~~L~~~p~i~--~~v~~g~l~v~G--~~Y 180 (214)
.... ..+..+|. +.. ......|..+|.+|..++.+.. ..+......+++ -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 0000 00011111 100 1233457888999998877766 455555555555 455
Q ss_pred EcCCCeEEEe
Q 028092 181 NFVDCTFEKW 190 (214)
Q Consensus 181 Di~tG~v~~~ 190 (214)
+.-.|..+.+
T Consensus 240 l~~~G~~Y~f 249 (276)
T KOG1578|consen 240 LQVHGGYYNF 249 (276)
T ss_pred eeeeeeeEEe
Confidence 5555554443
No 17
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=62.68 E-value=6.6 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=19.1
Q ss_pred ceEEEEEEEEcCCCeEEEeeccC
Q 028092 172 ALSLHGGYYNFVDCTFEKWTLDY 194 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~~~ 194 (214)
+|.|+||+++..+|.|+.+-...
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~G~ 51 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAEGP 51 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEEcC
Confidence 36799999999999999876544
No 18
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=55.82 E-value=26 Score=27.27 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=33.7
Q ss_pred ChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhc
Q 028092 16 NLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 85 (214)
Q Consensus 16 ~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L 85 (214)
+|..|++..-.+-| ++|+.|.+..+..+.. +.+++-. +..||+ ||+||+..+
T Consensus 60 dP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv-------------sl~~ALe~i 111 (130)
T TIGR02742 60 DPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV-------------SLKGALEKM 111 (130)
T ss_pred ChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc-------------cHHHHHHHH
Confidence 78889888777777 5566777765554432 3555543 444775 788888754
No 19
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=53.69 E-value=35 Score=34.39 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHhhChhHHHHHHcCc------eEEEEEEEEcCCCeEEEeeccCCC
Q 028092 157 NLLTYPWIEEKVRAGA------LSLHGGYYNFVDCTFEKWTLDYDG 196 (214)
Q Consensus 157 ~L~~~p~i~~~v~~g~------l~v~G~~YDi~tG~v~~~~~~~~~ 196 (214)
.|.+.|.||+.+++.. ...+|+..|..|-+|+.++.+..+
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~lp 585 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDLLP 585 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCCCC
Confidence 3456677777776543 457999999999999999887644
No 20
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=53.12 E-value=18 Score=24.26 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHhhChhHHHHHHcCceEEEEE
Q 028092 155 LLNLLTYPWIEEKVRAGALSLHGG 178 (214)
Q Consensus 155 v~~L~~~p~i~~~v~~g~l~v~G~ 178 (214)
|..|.++|.+-+.+++|++.+.|.
T Consensus 6 V~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 6 VNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHChHHHHHHHcCCeeEecC
Confidence 678899999999999999999985
No 21
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=52.50 E-value=1e+02 Score=23.59 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=62.7
Q ss_pred hhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhh
Q 028092 22 NLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGI 101 (214)
Q Consensus 22 ~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav 101 (214)
-+..|-.|.+.++-+==-|-+...... .....+.++|..+.+.. +...+|..|+..-+--.|.|-|-.|=-++
T Consensus 5 ll~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 5 LLEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HHhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 346788999999988888877544433 55678999999999986 46778999987777778999999998888
Q ss_pred HHhhhcC
Q 028092 102 HALMSMQ 108 (214)
Q Consensus 102 ~aa~~~~ 108 (214)
-+.+-.+
T Consensus 78 Pail~aP 84 (121)
T PF04019_consen 78 PAILYAP 84 (121)
T ss_pred HHHHhCC
Confidence 7766544
No 22
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=51.78 E-value=6.4 Score=28.04 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.7
Q ss_pred EEEEEEEEcCCCeEEE
Q 028092 174 SLHGGYYNFVDCTFEK 189 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~~ 189 (214)
..|||.||++||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 4799999999999754
No 23
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=47.41 E-value=64 Score=27.51 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=43.7
Q ss_pred ChHHHHhhcCCCCCcEEEEeecCCCC----ChhhhcCCC-CCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceE
Q 028092 16 NLEHYQNLADGQAPKFMVIACADSRV----CPSNILGFQ-PGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENI 90 (214)
Q Consensus 16 ~~~~~~~l~~gq~P~~~vitC~DSRv----~pe~i~~~~-~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~I 90 (214)
+++.++++...++|.=++.-|...+. +.+.++... .+-++++=++ -.| .-+++|-=....+|++.|
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v---~dp------~NlGai~Rta~a~G~~~v 124 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGV---TDP------HNLGACLRSADAAGVHAV 124 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCC---CCc------chHHHHHHHHHHcCCCEE
Confidence 45668888888777666666654332 233334322 2223443221 112 235677777788999999
Q ss_pred EEEccCCch
Q 028092 91 LVIGHSRCG 99 (214)
Q Consensus 91 vV~GHt~CG 99 (214)
++.+++.+.
T Consensus 125 i~~~~~~~~ 133 (244)
T PRK11181 125 IVPKDRSAQ 133 (244)
T ss_pred EECCCCCCC
Confidence 998887543
No 24
>PRK11440 putative hydrolase; Provisional
Probab=47.02 E-value=43 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHH
Q 028092 48 GFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHA 103 (214)
Q Consensus 48 ~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~a 103 (214)
...+||.++.++--+-+... .|+.-+...|+++++|+|=+-..-|.+
T Consensus 91 ~~~~~d~vi~K~~~saF~~T---------~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 91 GKTDSDIEVTKRQWGAFYGT---------DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred CCCCCCEEEecCCcCCCCCC---------CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45678888777755544322 466667889999999999655444443
No 25
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=44.68 E-value=11 Score=24.32 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=11.0
Q ss_pred EEEEEEcCCCeEE
Q 028092 176 HGGYYNFVDCTFE 188 (214)
Q Consensus 176 ~G~~YDi~tG~v~ 188 (214)
-|.-|||+||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999964
No 26
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=43.17 E-value=9.4 Score=27.24 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=13.4
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||++||++.
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 589999999999865
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=40.57 E-value=15 Score=29.39 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=13.6
Q ss_pred CCceEEEEccCCchhhH
Q 028092 86 KVENILVIGHSRCGGIH 102 (214)
Q Consensus 86 ~v~~IvV~GHt~CGav~ 102 (214)
.+..|.|+||.+||=.+
T Consensus 2 ~~~~I~i~G~~~sGKTT 18 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTT 18 (188)
T ss_dssp TEEEEEEEESTTSSHHH
T ss_pred CEEEEEEECCCCCCcEe
Confidence 35789999999999543
No 28
>PRK14432 acylphosphatase; Provisional
Probab=40.29 E-value=37 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.5
Q ss_pred eEEEEEEEEcCCCeEEEee
Q 028092 173 LSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~ 191 (214)
+.|.||+.++.+|.|+.+.
T Consensus 28 lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 28 MKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred hCCEEEEEECCCCCEEEEE
Confidence 5799999999999888654
No 29
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=40.25 E-value=9.5 Score=27.24 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.2
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 489999999999865
No 30
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=40.05 E-value=16 Score=28.18 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.9
Q ss_pred EEEEEEEEcCCCeEEEe
Q 028092 174 SLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~~~ 190 (214)
..|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 48999999999998764
No 31
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=38.80 E-value=19 Score=28.81 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.7
Q ss_pred CceEEEEccCCchh
Q 028092 87 VENILVIGHSRCGG 100 (214)
Q Consensus 87 v~~IvV~GHt~CGa 100 (214)
++.|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 67999999999994
No 32
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.76 E-value=19 Score=31.13 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.1
Q ss_pred CceEEEEccCCchhhH
Q 028092 87 VENILVIGHSRCGGIH 102 (214)
Q Consensus 87 v~~IvV~GHt~CGav~ 102 (214)
=+-|.|+|||+||=-+
T Consensus 29 GEfvsilGpSGcGKST 44 (248)
T COG1116 29 GEFVAILGPSGCGKST 44 (248)
T ss_pred CCEEEEECCCCCCHHH
Confidence 4678999999999644
No 33
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=37.17 E-value=14 Score=26.88 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=13.3
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 489999999999864
No 34
>PRK14423 acylphosphatase; Provisional
Probab=36.16 E-value=57 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=17.5
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+.++.+|.|+.+-.
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~~ 50 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVFE 50 (92)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 468999999999999886543
No 35
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=36.16 E-value=41 Score=22.97 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhChhHHHHHHc
Q 028092 149 ESVNCSLLNLLTYPWIEEKVRA 170 (214)
Q Consensus 149 ~nV~~~v~~L~~~p~i~~~v~~ 170 (214)
-+|+.+++.||..|+-|+.|++
T Consensus 40 PsikSSLkFLRkTpWAR~KVE~ 61 (64)
T PF09905_consen 40 PSIKSSLKFLRKTPWAREKVEN 61 (64)
T ss_dssp --HHHHHHHHHHSHHHHHHHHH
T ss_pred CchHHHHHHHhcCHhHHHHHHH
Confidence 5788999999999999998863
No 36
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=35.53 E-value=1.1e+02 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.7
Q ss_pred CCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHh
Q 028092 51 PGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHAL 104 (214)
Q Consensus 51 ~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa 104 (214)
++|..+.|+--|.+... .|+.-+...|+++|+|+|=.-.+-|.++
T Consensus 85 ~~~~vi~K~~~saf~~t---------~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT---------DLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TTSEEEEESSSSTTTTS---------SHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred cccceEEeecccccccc---------cccccccccccceEEEcccccCcEEehh
Confidence 39999999977766432 3566678899999999998877777654
No 37
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=35.30 E-value=14 Score=26.97 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=13.2
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||++||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 479999999999964
No 38
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=35.18 E-value=15 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.1
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||++||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 489999999999854
No 39
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=35.16 E-value=1.7e+02 Score=24.69 Aligned_cols=72 Identities=8% Similarity=0.134 Sum_probs=43.2
Q ss_pred ChHHHHhhcCCCCCcEEEEeecCCCC-ChhhhcCC---CCCc-eEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceE
Q 028092 16 NLEHYQNLADGQAPKFMVIACADSRV-CPSNILGF---QPGE-AFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENI 90 (214)
Q Consensus 16 ~~~~~~~l~~gq~P~~~vitC~DSRv-~pe~i~~~---~~Gd-lfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~I 90 (214)
+++.++++....+|.=++.-|...+. +.+.++.. .... +.++=++ -.| .-+++|-=....+|++.|
T Consensus 49 ~~~~l~~l~~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v---~dp------~NlGaI~Rta~afG~~~v 119 (237)
T TIGR00186 49 DRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEI---TDP------HNLGAILRTAEAFGVDGV 119 (237)
T ss_pred CHHHHHHHhCCCCCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCC---CCC------ccHHHHHHHHHHcCCCEE
Confidence 46678888888778766666655544 44455422 1223 3333222 112 134577777788999999
Q ss_pred EEEccC
Q 028092 91 LVIGHS 96 (214)
Q Consensus 91 vV~GHt 96 (214)
++.+++
T Consensus 120 il~~~~ 125 (237)
T TIGR00186 120 ILPKRR 125 (237)
T ss_pred EECCCC
Confidence 998875
No 40
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=32.68 E-value=34 Score=27.31 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHh-----cCCceEEEEccCCchhhHHhh
Q 028092 73 ETNAALEFAVNS-----VKVENILVIGHSRCGGIHALM 105 (214)
Q Consensus 73 ~~~asleyAv~~-----L~v~~IvV~GHt~CGav~aa~ 105 (214)
.+.+++++.... ...+.|+|+|||.-|.+.+.+
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhh
Confidence 467888998887 668899999998888776543
No 41
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=32.46 E-value=19 Score=26.79 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=13.4
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..||+.||+.||+..
T Consensus 67 p~H~a~Fdl~tG~~~ 81 (106)
T COG2146 67 PLHGARFDLRTGECL 81 (106)
T ss_pred CccCCEEEcCCCcee
Confidence 589999999999954
No 42
>PRK14429 acylphosphatase; Provisional
Probab=32.14 E-value=68 Score=23.02 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.3
Q ss_pred eEEEEEEEEcCCCeEEEee
Q 028092 173 LSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~ 191 (214)
+.|.||+.+..+|.|+.+-
T Consensus 28 ~gl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEILA 46 (90)
T ss_pred hCCEEEEEECCCCeEEEEE
Confidence 5799999999999887644
No 43
>PRK14430 acylphosphatase; Provisional
Probab=31.94 E-value=36 Score=24.68 Aligned_cols=20 Identities=35% Similarity=0.204 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+..+|.|+.+-.
T Consensus 30 lgl~G~VrN~~dGsVei~~q 49 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVMAS 49 (92)
T ss_pred hCCEEEEEECCCCcEEEEEE
Confidence 57999999999999886543
No 44
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=31.87 E-value=17 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=13.2
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||+.||+..
T Consensus 71 P~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 71 PLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCEEECCCcccC
Confidence 489999999999864
No 45
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=31.73 E-value=96 Score=24.65 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccC
Q 028092 48 GFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS 96 (214)
Q Consensus 48 ~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt 96 (214)
...+||..+.++.=+-+. ...|+.-+...|+++|||+|=.
T Consensus 84 ~~~~~~~v~~K~~~saF~---------~t~L~~~L~~~gi~~vvi~G~~ 123 (179)
T cd01015 84 APQEDEMVLVKKYASAFF---------GTSLAATLTARGVDTLIVAGCS 123 (179)
T ss_pred CCCCCCEEEecCccCCcc---------CCcHHHHHHHcCCCEEEEeeec
Confidence 334667666665322221 1257777889999999999964
No 46
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=31.64 E-value=19 Score=26.24 Aligned_cols=14 Identities=7% Similarity=-0.252 Sum_probs=12.6
Q ss_pred EEEEEEEEcCCCeE
Q 028092 174 SLHGGYYNFVDCTF 187 (214)
Q Consensus 174 ~v~G~~YDi~tG~v 187 (214)
..|||.||++||..
T Consensus 62 P~Hg~~Fdl~~G~~ 75 (108)
T cd03474 62 RAHLWQFDADTGEG 75 (108)
T ss_pred CCcCCEEECCCccc
Confidence 48999999999985
No 47
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=31.60 E-value=18 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=13.2
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||+.||+..
T Consensus 63 p~Hg~~Fd~~tG~~~ 77 (106)
T PRK09965 63 PLHAASFCLRTGKAL 77 (106)
T ss_pred CCCCCEEEcCCCCee
Confidence 489999999999964
No 48
>PRK14440 acylphosphatase; Provisional
Probab=31.04 E-value=39 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcCCCeEEEeecc
Q 028092 172 ALSLHGGYYNFVDCTFEKWTLD 193 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~~ 193 (214)
++.|.||+.+...|.|+.+-..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~~G 49 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVAEG 49 (90)
T ss_pred HcCCEEEEEECCCCCEEEEEEc
Confidence 3579999999999988865433
No 49
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=30.98 E-value=16 Score=26.21 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.0
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||++||.+.
T Consensus 62 p~Hg~~Fdl~~G~~~ 76 (98)
T cd03530 62 PLHNWVIDLETGEAQ 76 (98)
T ss_pred CCCCCEEECCCCCCC
Confidence 489999999999853
No 50
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=30.51 E-value=19 Score=27.20 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=13.5
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||-||+.||+..
T Consensus 71 P~Hg~~FDLrTG~~~ 85 (107)
T cd03473 71 TKHNWKLDVSTMKYV 85 (107)
T ss_pred CCCCCEEEcCCCCCc
Confidence 589999999999975
No 51
>PRK14445 acylphosphatase; Provisional
Probab=30.41 E-value=50 Score=23.75 Aligned_cols=20 Identities=35% Similarity=0.260 Sum_probs=16.8
Q ss_pred ceEEEEEEEEcCCCeEEEee
Q 028092 172 ALSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~ 191 (214)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hCCCEEEEEECCCCeEEEEE
Confidence 46899999999999887643
No 52
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=30.08 E-value=34 Score=27.45 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=14.1
Q ss_pred cCCceEEEEccCCchhh
Q 028092 85 VKVENILVIGHSRCGGI 101 (214)
Q Consensus 85 L~v~~IvV~GHt~CGav 101 (214)
=+...|+|+|+++||=.
T Consensus 39 ~~~~~I~iiG~~g~GKS 55 (204)
T cd01878 39 SGIPTVALVGYTNAGKS 55 (204)
T ss_pred cCCCeEEEECCCCCCHH
Confidence 34689999999999953
No 53
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=29.86 E-value=58 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCceEEEEccCCchhhHHhh
Q 028092 74 TNAALEFAVNSVKVENILVIGHSRCGGIHALM 105 (214)
Q Consensus 74 ~~asleyAv~~L~v~~IvV~GHt~CGav~aa~ 105 (214)
....+...+..++.+.++++|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 34566777899999999999999877766543
No 54
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=29.59 E-value=29 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.3
Q ss_pred ceEEEEccCCchh
Q 028092 88 ENILVIGHSRCGG 100 (214)
Q Consensus 88 ~~IvV~GHt~CGa 100 (214)
+.|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4699999999994
No 55
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=29.46 E-value=1.2e+02 Score=24.85 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhH
Q 028092 50 QPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH 102 (214)
Q Consensus 50 ~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~ 102 (214)
.+||.++-++--+-+... -|+.-+..+|+++|||+|=+--.-|.
T Consensus 114 ~~~d~vi~K~~~saF~~T---------~L~~~Lr~~gi~~lii~Gv~T~~CV~ 157 (203)
T cd01013 114 QPDDTVLTKWRYSAFKRS---------PLLERLKESGRDQLIITGVYAHIGCL 157 (203)
T ss_pred CCCCEEEeCCCcCCcCCC---------CHHHHHHHcCCCEEEEEEeccChhHH
Confidence 467877767654444322 35666889999999999965444443
No 56
>PRK03592 haloalkane dehalogenase; Provisional
Probab=29.34 E-value=57 Score=27.57 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCceEEEEccCCchhhHHhhh
Q 028092 76 AALEFAVNSVKVENILVIGHSRCGGIHALMS 106 (214)
Q Consensus 76 asleyAv~~L~v~~IvV~GHt~CGav~aa~~ 106 (214)
.-+.-.+..|+.+.++++|||--|.+...+.
T Consensus 81 ~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 81 RYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 3455557889999999999999999876544
No 57
>PRK14436 acylphosphatase; Provisional
Probab=29.34 E-value=80 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+.+..+|.|+.+-.
T Consensus 29 ~l~l~G~V~N~~dG~Vei~~q 49 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAVLE 49 (91)
T ss_pred HcCCEEEEEECCCCcEEEEEE
Confidence 357999999999999886543
No 58
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=29.07 E-value=64 Score=26.09 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCceEEEEccCCchhhHHhhh
Q 028092 76 AALEFAVNSVKVENILVIGHSRCGGIHALMS 106 (214)
Q Consensus 76 asleyAv~~L~v~~IvV~GHt~CGav~aa~~ 106 (214)
..+...+..++.+.++++|||--|.+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 3344456788889999999999998776543
No 59
>PRK14434 acylphosphatase; Provisional
Probab=28.97 E-value=87 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=17.6
Q ss_pred ceE-EEEEEEEcCCCeEEEeecc
Q 028092 172 ALS-LHGGYYNFVDCTFEKWTLD 193 (214)
Q Consensus 172 ~l~-v~G~~YDi~tG~v~~~~~~ 193 (214)
++. |.||+.+..+|.|+.+-..
T Consensus 27 ~lg~l~G~V~N~~dGsVei~~qG 49 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEILAQS 49 (92)
T ss_pred HcCCcEEEEEECCCCCEEEEEEc
Confidence 357 9999999999988765543
No 60
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=28.59 E-value=82 Score=22.32 Aligned_cols=20 Identities=30% Similarity=0.187 Sum_probs=14.7
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+..+|.|+.+..
T Consensus 30 ~gl~G~V~N~~dg~V~i~~~ 49 (91)
T PF00708_consen 30 LGLTGWVRNLPDGSVEIEAE 49 (91)
T ss_dssp TT-EEEEEE-TTSEEEEEEE
T ss_pred hCCceEEEECCCCEEEEEEE
Confidence 47999999999998876543
No 61
>PRK14449 acylphosphatase; Provisional
Probab=28.58 E-value=86 Score=22.45 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.3
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+.+..+|.|+.+..
T Consensus 28 ~lgl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVVAE 48 (90)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 357999999999998886544
No 62
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=28.45 E-value=35 Score=25.96 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.9
Q ss_pred ceEEEEccCCchhh
Q 028092 88 ENILVIGHSRCGGI 101 (214)
Q Consensus 88 ~~IvV~GHt~CGav 101 (214)
+.|+|+|+++||=.
T Consensus 1 ~~i~iiG~~~~GKt 14 (168)
T cd01887 1 PVVTVMGHVDHGKT 14 (168)
T ss_pred CEEEEEecCCCCHH
Confidence 46999999999953
No 63
>PRK14422 acylphosphatase; Provisional
Probab=28.20 E-value=79 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+-+...|.|+.+..
T Consensus 31 ~~gl~G~V~N~~dG~Vei~~~ 51 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVVAE 51 (93)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 358999999999998876543
No 64
>PRK14444 acylphosphatase; Provisional
Probab=28.17 E-value=81 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=16.6
Q ss_pred ceEEEEEEEEcCCCeEEEee
Q 028092 172 ALSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~ 191 (214)
++.|.||+.++.+|.|+.+-
T Consensus 29 ~lgl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAVF 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 35799999999999887644
No 65
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=26.97 E-value=4.9e+02 Score=23.79 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=22.1
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCC
Q 028092 60 VANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSR 97 (214)
Q Consensus 60 aGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~ 97 (214)
+||.+.+ +|++|.. .+++.|+++||-+
T Consensus 230 ~gnfiG~----------~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 230 MGNFVGP----------MLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred eehhHHH----------HHHHHHH-cCCCEEEEEeeHH
Confidence 5887765 8888886 6999999999954
No 66
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=26.95 E-value=65 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCceEEEEccCCchhhHHhh
Q 028092 77 ALEFAVNSVKVENILVIGHSRCGGIHALM 105 (214)
Q Consensus 77 sleyAv~~L~v~~IvV~GHt~CGav~aa~ 105 (214)
.+.-.+..++.+.++++|||--|++...+
T Consensus 91 ~l~~~l~~l~~~~~~lvGhS~Gg~va~~~ 119 (294)
T PLN02824 91 QLNDFCSDVVGDPAFVICNSVGGVVGLQA 119 (294)
T ss_pred HHHHHHHHhcCCCeEEEEeCHHHHHHHHH
Confidence 34444668889999999999999887543
No 67
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=26.85 E-value=23 Score=25.23 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=13.3
Q ss_pred EEEEEEEEcCCCeEE
Q 028092 174 SLHGGYYNFVDCTFE 188 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~ 188 (214)
..|||.||++||+..
T Consensus 62 p~H~~~f~~~~G~~~ 76 (98)
T cd03467 62 PCHGSRFDLRTGEVV 76 (98)
T ss_pred CCCCCEEeCCCccCc
Confidence 589999999999964
No 68
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=26.83 E-value=1.2e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHh
Q 028092 50 QPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHAL 104 (214)
Q Consensus 50 ~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa 104 (214)
.|+|.++.|+.-|-+.. ..|+-.+...|+++++|+|-.-..-|.++
T Consensus 60 ~~~~~vi~K~~~saf~~---------t~L~~~L~~~gi~~lii~G~~T~~CV~~T 105 (157)
T cd01012 60 FPDAPVIEKTSFSCWED---------EAFRKALKATGRKQVVLAGLETHVCVLQT 105 (157)
T ss_pred CCCCCceecccccCcCC---------HHHHHHHHhcCCCEEEEEEeeccHHHHHH
Confidence 57887777876554432 25666788899999999998776666554
No 69
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=26.69 E-value=72 Score=22.35 Aligned_cols=20 Identities=15% Similarity=-0.013 Sum_probs=16.2
Q ss_pred eEEEEEEEEcCC--CeEEEeec
Q 028092 173 LSLHGGYYNFVD--CTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~t--G~v~~~~~ 192 (214)
+.|+||++.+.. |++.+++.
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~L 23 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADL 23 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEE
Confidence 689999999997 57777665
No 70
>PRK14451 acylphosphatase; Provisional
Probab=26.60 E-value=51 Score=23.70 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+-+..+|.|+.+-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~q 48 (89)
T PRK14451 29 LMISGWARNLADGRVEVFAC 48 (89)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 57999999999999886543
No 71
>PRK14448 acylphosphatase; Provisional
Probab=26.49 E-value=50 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+..+|.|+.+..
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14448 28 IGIKGYVKNRPDGSVEVVAV 47 (90)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 57999999999998886544
No 72
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=26.48 E-value=36 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=11.4
Q ss_pred eEEEEccCCchhhH
Q 028092 89 NILVIGHSRCGGIH 102 (214)
Q Consensus 89 ~IvV~GHt~CGav~ 102 (214)
.|+|+|+++||=..
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 38999999999543
No 73
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=26.41 E-value=19 Score=30.00 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=22.8
Q ss_pred HHHH-hhChhHHHHHHcCceEEEEEEEEcCCCeEEEeecc
Q 028092 155 LLNL-LTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLD 193 (214)
Q Consensus 155 v~~L-~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~ 193 (214)
++.| ++||.++++++. |-.+|+.||+++.++..
T Consensus 137 ~~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~ 170 (202)
T PF01707_consen 137 ARELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPT 170 (202)
T ss_dssp HHHHHCC-CCHCCHCCC------T-EEETTTTCEES--TT
T ss_pred HHHHHHhCchhhhcccc------CeeEeecCCceecCCCc
Confidence 3445 689999998754 67899999999887654
No 74
>PRK14441 acylphosphatase; Provisional
Probab=26.30 E-value=70 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.5
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+.+...|.|+.+-.
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~q 50 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEAE 50 (93)
T ss_pred hcCcEEEEEECCCCEEEEEEE
Confidence 468999999999998886543
No 75
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=26.29 E-value=36 Score=27.81 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.2
Q ss_pred ceEEEEccCCchhhH
Q 028092 88 ENILVIGHSRCGGIH 102 (214)
Q Consensus 88 ~~IvV~GHt~CGav~ 102 (214)
+.|+|+||.++|=.+
T Consensus 1 rnv~iiG~~~~GKTt 15 (213)
T cd04167 1 RNVAIAGHLHHGKTS 15 (213)
T ss_pred CcEEEEcCCCCCHHH
Confidence 468999999999544
No 76
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=26.00 E-value=42 Score=28.94 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.6
Q ss_pred CceEEEEccCCchhhH
Q 028092 87 VENILVIGHSRCGGIH 102 (214)
Q Consensus 87 v~~IvV~GHt~CGav~ 102 (214)
.+.|.|+||.++|=.+
T Consensus 2 ~Rni~ivGh~~~GKTT 17 (267)
T cd04169 2 RRTFAIISHPDAGKTT 17 (267)
T ss_pred ccEEEEEcCCCCCHHH
Confidence 5789999999999654
No 77
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=25.99 E-value=80 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCceEEEEccCCchhhH
Q 028092 75 NAALEFAVNSVKVENILVIGHSRCGGIH 102 (214)
Q Consensus 75 ~asleyAv~~L~v~~IvV~GHt~CGav~ 102 (214)
+..+.-.+......+|+|.||||--+-.
T Consensus 102 L~~~a~~L~~~p~~~i~V~GHTD~~Gs~ 129 (190)
T COG2885 102 LDELAKYLKKNPITRILVEGHTDSTGSD 129 (190)
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCCCH
Confidence 3334334555557899999999987644
No 78
>PRK14426 acylphosphatase; Provisional
Probab=25.38 E-value=59 Score=23.47 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=16.6
Q ss_pred ceEEEEEEEEcCCCeEEEee
Q 028092 172 ALSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~ 191 (214)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 35899999999999887644
No 79
>PRK14433 acylphosphatase; Provisional
Probab=25.15 E-value=99 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+.++.+|.|+.+..
T Consensus 26 ~~~l~G~V~N~~dG~Vei~~~ 46 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVVAE 46 (87)
T ss_pred HcCCEEEEEECCCCCEEEEEE
Confidence 358999999999998876543
No 80
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=24.90 E-value=1.5e+02 Score=19.73 Aligned_cols=21 Identities=5% Similarity=-0.122 Sum_probs=17.0
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
...+++|+-|+.|++|-....
T Consensus 22 ~~~~~~WyvD~~tn~VVV~a~ 42 (62)
T PF02983_consen 22 PVAVTSWYVDPRTNKVVVTAD 42 (62)
T ss_dssp GGCEEEEEEECCCTEEEEEEE
T ss_pred CCCcceEEEeCCCCeEEEEEC
Confidence 458999999999999875443
No 81
>PRK01160 hypothetical protein; Provisional
Probab=24.77 E-value=3.2e+02 Score=22.44 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=56.3
Q ss_pred HHhhcCCCCCcEEEEeecCCCCChh-hhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhc--CC-ceEEEEcc
Q 028092 20 YQNLADGQAPKFMVIACADSRVCPS-NILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV--KV-ENILVIGH 95 (214)
Q Consensus 20 ~~~l~~gq~P~~~vitC~DSRv~pe-~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L--~v-~~IvV~GH 95 (214)
+.-+..|-.|.+.++-.==-|-+.. .++.. ....+.++|..+.+.. +...+|+.|...+ +. -.|.|-|-
T Consensus 52 ~~ll~~g~~P~laIvD~kTkR~~~~~~i~~~-~~~~i~V~NPpGtIt~------el~~ai~~a~~~~~~~~~~~I~VdGE 124 (178)
T PRK01160 52 ENLLRVGLKPFLAIYDLKTKRREYKPSIFEH-EEVSITVRNPPGTITL------ALLRAIKKAFSLIERGKKVRIEVNGE 124 (178)
T ss_pred HHHHHCCCCCCEEEEeCccccCCCccccccc-cccEEEEECCCCcccH------HHHHHHHHHHHhhhcCCeEEEEEcCh
Confidence 3345678899999998877776543 33222 2345889999999986 5778899884322 22 26889999
Q ss_pred CCchhhHHhhhcC
Q 028092 96 SRCGGIHALMSMQ 108 (214)
Q Consensus 96 t~CGav~aa~~~~ 108 (214)
.|=-++-+.+..+
T Consensus 125 EDLa~lP~il~aP 137 (178)
T PRK01160 125 EDLAVIPAVLYAP 137 (178)
T ss_pred HHHHHHHHHHhcC
Confidence 9988877765543
No 82
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.70 E-value=62 Score=24.05 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHhhChhHHHHHHcCceEEE--EEEEEcC
Q 028092 153 CSLLNLLTYPWIEEKVRAGALSLH--GGYYNFV 183 (214)
Q Consensus 153 ~~v~~L~~~p~i~~~v~~g~l~v~--G~~YDi~ 183 (214)
..+++|..+|-+++.+ .|- ||+|=++
T Consensus 49 ~tiknlL~hPrl~k~L-----~iengG~VyYP~ 76 (107)
T COG4707 49 WTIKNLLLHPRLKKML-----SIENGGWVYYPE 76 (107)
T ss_pred hHHHHHhcCchhhhhe-----eeecCcEEEccc
Confidence 4578899999999876 677 9998776
No 83
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=24.69 E-value=1.8e+02 Score=24.01 Aligned_cols=63 Identities=6% Similarity=0.041 Sum_probs=35.4
Q ss_pred CCCCChhhhcCCCCCceEEEEccCC---CCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHH
Q 028092 38 DSRVCPSNILGFQPGEAFIVRNVAN---MVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHA 103 (214)
Q Consensus 38 DSRv~pe~i~~~~~GdlfViRNaGN---~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~a 103 (214)
+..+.|+. ...++|+++.++... ....+. +.......|+-.+..+|+++|+|||=.-.--|..
T Consensus 97 g~~i~~~L--~~~~~~~vi~K~~~~~~~~~saF~-~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV~~ 162 (212)
T PTZ00331 97 GAQLHKDL--VVERIDIIIRKGTNRDVDSYSAFD-NDKGSKTGLAQILKAHGVRRVFICGLAFDFCVLF 162 (212)
T ss_pred cccCChhh--ccCCCcEEEECCCCCCCceecCcc-CCCCCCchHHHHHHHCCCCEEEEEEeccCHHHHH
Confidence 44554442 345789888876431 111110 0000123566677889999999999765555544
No 84
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=24.54 E-value=1.6e+02 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHHh
Q 028092 49 FQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHAL 104 (214)
Q Consensus 49 ~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa 104 (214)
..+||.++-++--+-+.. ..|+.-+...|+++|||+|=+-..-|.++
T Consensus 122 p~~~d~vi~K~~~saF~~---------T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sT 168 (226)
T TIGR03614 122 PQPGDIVLPKPRYSGFFN---------TPLDSMLRARGIRNLVFTGIATNVCVEST 168 (226)
T ss_pred CCCCCEEEeCCCcCCCCC---------CCHHHHHHHCCCCEEEEeccCccHhHHHH
Confidence 346777666554333322 13677778899999999997766666554
No 85
>PRK14421 acylphosphatase; Provisional
Probab=24.46 E-value=1.1e+02 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+-+..+|.|+.+..
T Consensus 30 lgL~G~V~N~~dG~Vei~~~ 49 (99)
T PRK14421 30 LGLEGWVRNRRDGSVEALFA 49 (99)
T ss_pred hCCEEEEEECCCCEEEEEEe
Confidence 57999999999998886543
No 86
>PRK14420 acylphosphatase; Provisional
Probab=24.45 E-value=64 Score=23.10 Aligned_cols=20 Identities=30% Similarity=-0.014 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+..+|.|+.+-.
T Consensus 28 ~gl~G~V~N~~dG~Vei~~q 47 (91)
T PRK14420 28 RKLTGWVKNRDDGTVEIEAE 47 (91)
T ss_pred cCCEEEEEECCCCcEEEEEE
Confidence 57999999999998876543
No 87
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=24.32 E-value=2.5e+02 Score=21.51 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=30.3
Q ss_pred CCCcEEEEeecCCC---CChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchh
Q 028092 27 QAPKFMVIACADSR---VCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGG 100 (214)
Q Consensus 27 q~P~~~vitC~DSR---v~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGa 100 (214)
..|...|.+-.|.. .|....+...-..+++.-.. ...+.. ....++.-....++ .+|++|||.=..
T Consensus 51 ~~~~~~V~GN~D~~~~~~~~~~~~~~~g~~i~l~Hg~--~~~~~~-----~~~~l~~~~~~~~~-d~vi~GHtH~~~ 119 (158)
T TIGR00040 51 AAKVIAVRGNNDGERDELPEEEIFEAEGIDFGLVHGD--LVYPRG-----DLLVLEYLAKELGV-DVLIFGHTHIPV 119 (158)
T ss_pred CCceEEEccCCCchhhhCCcceEEEECCEEEEEEeCc--ccccCC-----CHHHHHHHHhccCC-CEEEECCCCCCc
Confidence 34677788888843 34333344332334444322 122211 11122221222233 588999987543
No 88
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=24.23 E-value=5.5e+02 Score=23.37 Aligned_cols=27 Identities=41% Similarity=0.559 Sum_probs=21.9
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCC
Q 028092 60 VANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSR 97 (214)
Q Consensus 60 aGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~ 97 (214)
.||.+.. +|++|.. .+++.|+++||-+
T Consensus 217 ~gnfiG~----------~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 217 TANFLGS----------MLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred EehhhHH----------HHHHHHH-cCCCEEEEEeEhH
Confidence 4777654 7888887 6999999999964
No 89
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=23.96 E-value=48 Score=25.27 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.4
Q ss_pred ceEEEEccCCchhhH
Q 028092 88 ENILVIGHSRCGGIH 102 (214)
Q Consensus 88 ~~IvV~GHt~CGav~ 102 (214)
+.|+|+|++++|=..
T Consensus 1 ~~i~~~G~~~~GKss 15 (168)
T cd01897 1 PTLVIAGYPNVGKSS 15 (168)
T ss_pred CeEEEEcCCCCCHHH
Confidence 579999999999543
No 90
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=23.62 E-value=81 Score=26.09 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCceEEEEccC
Q 028092 73 ETNAALEFAVNSVKVENILVIGHS 96 (214)
Q Consensus 73 ~~~asleyAv~~L~v~~IvV~GHt 96 (214)
+..+-||||...|++..|++|=|-
T Consensus 120 ~lvalLEfAEekl~~d~Vfi~F~K 143 (191)
T KOG4387|consen 120 GLVALLEFAEEKLHVDKVFICFDK 143 (191)
T ss_pred hHHHHHHHHHHhhccceEEEEEec
Confidence 678999999999999999999763
No 91
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=23.58 E-value=1.3e+02 Score=27.18 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.6
Q ss_pred hhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEcc
Q 028092 44 SNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGH 95 (214)
Q Consensus 44 e~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GH 95 (214)
.++.++.+|| .||-|+||-. +-.++.--+..+|++.|=|+=.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~---------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG---------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH---------HHHHHHHHHHHhCcceEEEeec
Confidence 4567899999 7999999953 3334444467899999887643
No 92
>PRK14437 acylphosphatase; Provisional
Probab=23.35 E-value=1e+02 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+...|.|+.+..
T Consensus 49 lgL~G~V~N~~dG~Vei~~q 68 (109)
T PRK14437 49 LQLTGWVKNLSHGDVELVAC 68 (109)
T ss_pred hCCeEEEEECCCCCEEEEEE
Confidence 57999999999999887543
No 93
>PRK14427 acylphosphatase; Provisional
Probab=23.31 E-value=1.3e+02 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+-+...|.|+.+-.
T Consensus 31 ~lgl~G~V~N~~dGsVei~~q 51 (94)
T PRK14427 31 ELGLTGTVRNLDDGSVALVAE 51 (94)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 368999999999998876443
No 94
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.27 E-value=1.1e+02 Score=22.58 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCceEEEEccCCchhhHHhh
Q 028092 76 AALEFAVNSVKVENILVIGHSRCGGIHALM 105 (214)
Q Consensus 76 asleyAv~~L~v~~IvV~GHt~CGav~aa~ 105 (214)
..|.-.+..-+-..|+|+|||==|+++.++
T Consensus 52 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 81 (140)
T PF01764_consen 52 DALKELVEKYPDYSIVITGHSLGGALASLA 81 (140)
T ss_dssp HHHHHHHHHSTTSEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHhcccCccchhhccchHHHHHHHH
Confidence 444445556666899999999888877643
No 95
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=23.13 E-value=94 Score=26.42 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhc-CCceEEEEccCCchhhHHh
Q 028092 74 TNAALEFAVNSV-KVENILVIGHSRCGGIHAL 104 (214)
Q Consensus 74 ~~asleyAv~~L-~v~~IvV~GHt~CGav~aa 104 (214)
..+++++-...+ +.+.|+++|||- ||.-++
T Consensus 85 ~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~ 115 (274)
T TIGR03100 85 IAAAIDAFREAAPHLRRIVAWGLCD-AASAAL 115 (274)
T ss_pred HHHHHHHHHhhCCCCCcEEEEEECH-HHHHHH
Confidence 344444433333 678899999987 555443
No 96
>PRK14425 acylphosphatase; Provisional
Probab=23.09 E-value=71 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=16.4
Q ss_pred eEEEEEEEEcCCCeEEEee
Q 028092 173 LSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~ 191 (214)
+.|.||+.+...|.|+.+.
T Consensus 32 ~gl~G~V~N~~dGsVei~~ 50 (94)
T PRK14425 32 LGLTGWVRNESDGSVTALI 50 (94)
T ss_pred hCCEEEEEECCCCeEEEEE
Confidence 4799999999999988654
No 97
>PRK14438 acylphosphatase; Provisional
Probab=23.01 E-value=1.3e+02 Score=21.64 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.6
Q ss_pred ceEEEEEEEEcCCCeEEEee
Q 028092 172 ALSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~ 191 (214)
++.|.||+-+..+|.|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (91)
T PRK14438 28 RLNVSGWVKNLPNGSVQGCF 47 (91)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 35799999999999987643
No 98
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=22.90 E-value=1.5e+02 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.9
Q ss_pred hChhHHHHHHcCceEEEEEEEEcCCCeEEEee
Q 028092 160 TYPWIEEKVRAGALSLHGGYYNFVDCTFEKWT 191 (214)
Q Consensus 160 ~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~ 191 (214)
...++-+....|++.-||.+++++||+..-+.
T Consensus 211 ~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~ 242 (244)
T TIGR03736 211 AMNLLWKLFRKGRLEFHGVFVNLATGRTNPLP 242 (244)
T ss_pred HHHHHHHHHhcCceeeeEEEEECCCCcccccc
Confidence 45667788889999999999999999987543
No 99
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=22.78 E-value=67 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=16.4
Q ss_pred CCceEEEEccC--CchhhHHhh
Q 028092 86 KVENILVIGHS--RCGGIHALM 105 (214)
Q Consensus 86 ~v~~IvV~GHt--~CGav~aa~ 105 (214)
+-+.|+|+||. |+=++.+++
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~ 25 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAI 25 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHH
Confidence 46789999999 888887764
No 100
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=22.39 E-value=77 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhcCCceEEEEccCCchhhH
Q 028092 73 ETNAALEFAVNSVKVENILVIGHSRCGGIH 102 (214)
Q Consensus 73 ~~~asleyAv~~L~v~~IvV~GHt~CGav~ 102 (214)
+..+-||+|-..|++.+|+||=+-+--...
T Consensus 42 ~lvaLLElAee~L~c~~vvic~~k~~~d~~ 71 (108)
T PF02100_consen 42 SLVALLELAEEKLGCSHVVICLDKNRPDRA 71 (108)
T ss_dssp HHHHHHHHHHHHH----EEEEE---SS-HH
T ss_pred HHHHHHHHhcCcCCCCEEEEEEECCchhHH
Confidence 688999999999999999999876655533
No 101
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=22.27 E-value=53 Score=28.68 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=16.4
Q ss_pred CCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccC
Q 028092 51 PGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS 96 (214)
Q Consensus 51 ~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt 96 (214)
|.+.||. .||.+.. +|++|.. .++++|+++||-
T Consensus 220 ~~~~~v~--~gnfiG~----------~L~~a~~-~g~~~vll~G~~ 252 (261)
T PF01888_consen 220 PEEAIVQ--MGNFIGF----------ALEEAAE-KGFKKVLLVGHI 252 (261)
T ss_dssp --EEEE--------TT-----------HHHHTT--SSEEE-EEE-H
T ss_pred chhcEEE--ecchhHH----------HHHHHHH-cCCCEEEEeccc
Confidence 3445443 5888876 7888876 599999999994
No 102
>PRK14443 acylphosphatase; Provisional
Probab=21.86 E-value=83 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.5
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+-++.+|.|+.+..
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIHAI 49 (93)
T ss_pred HcCCEEEEEECCCCEEEEEEE
Confidence 358999999999999987553
No 103
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=21.79 E-value=87 Score=24.53 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHhcCCceEEEEccCCchhhH
Q 028092 72 SETNAALEFAVNSVKVENILVIGHSRCGGIH 102 (214)
Q Consensus 72 ~~~~asleyAv~~L~v~~IvV~GHt~CGav~ 102 (214)
....+.+++-...+|++.|.++|||-=|.+.
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHH
Confidence 3567888888999999999999998744443
No 104
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=21.59 E-value=36 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.8
Q ss_pred EEEEEEEEcCCCeEEEe
Q 028092 174 SLHGGYYNFVDCTFEKW 190 (214)
Q Consensus 174 ~v~G~~YDi~tG~v~~~ 190 (214)
..|||-||+ ||++..+
T Consensus 63 P~Hg~~fd~-~G~~~~~ 78 (115)
T cd03531 63 PFHDWRWGG-DGRCKAI 78 (115)
T ss_pred CCCCCEECC-CCCEEEC
Confidence 489999999 9997765
No 105
>PRK14446 acylphosphatase; Provisional
Probab=21.45 E-value=99 Score=22.22 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=18.0
Q ss_pred CceEEEEEEEEcCCCeEEEeec
Q 028092 171 GALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 171 g~l~v~G~~YDi~tG~v~~~~~ 192 (214)
.++.|.||+-+..+|.|+.+-.
T Consensus 26 ~~lgl~G~V~N~~dGsVei~~q 47 (88)
T PRK14446 26 VALGLVGHARNQADGSVEVVAA 47 (88)
T ss_pred eeCCeEEEEEECCCCCEEEEEE
Confidence 3578999999999998886543
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=21.25 E-value=73 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCceEEEEccCCchhh
Q 028092 77 ALEFAVNSVKVENILVIGHSRCGGI 101 (214)
Q Consensus 77 sleyAv~~L~v~~IvV~GHt~CGav 101 (214)
=|-|+|. .-+.+||+|+|+||=.
T Consensus 58 ~il~~ve--~nqvlIviGeTGsGKS 80 (674)
T KOG0922|consen 58 QILYAVE--DNQVLIVIGETGSGKS 80 (674)
T ss_pred HHHHHHH--HCCEEEEEcCCCCCcc
Confidence 4455555 4578999999999953
No 107
>PRK14435 acylphosphatase; Provisional
Probab=21.17 E-value=77 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+.+...|.|+.+..
T Consensus 28 ~gl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14435 28 LGVKGYVMNMDDGSVFIHAE 47 (90)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 57999999999999887554
No 108
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.16 E-value=1.3e+02 Score=22.89 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=23.4
Q ss_pred cCCCCCceEE-EEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEc
Q 028092 47 LGFQPGEAFI-VRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIG 94 (214)
Q Consensus 47 ~~~~~GdlfV-iRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~G 94 (214)
.+..|||+++ +-+-||.- ....++++| +..|.+.|.+.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 3589999665 55556642 467788887 457999988865
No 109
>PRK14424 acylphosphatase; Provisional
Probab=20.99 E-value=77 Score=23.10 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEeec
Q 028092 173 LSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 173 l~v~G~~YDi~tG~v~~~~~ 192 (214)
+.|.||+-++.+|.|+.+..
T Consensus 33 ~gl~G~V~N~~dG~Vei~~q 52 (94)
T PRK14424 33 LGLRGWVANLEDGTVEAMIQ 52 (94)
T ss_pred cCCeEEEEECCCCCEEEEEE
Confidence 57999999999998876544
No 110
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=20.97 E-value=61 Score=23.21 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.6
Q ss_pred eEEEEccCCchh
Q 028092 89 NILVIGHSRCGG 100 (214)
Q Consensus 89 ~IvV~GHt~CGa 100 (214)
.|+|+|..+||=
T Consensus 1 kI~V~G~~g~GK 12 (119)
T PF08477_consen 1 KIVVLGDSGVGK 12 (119)
T ss_dssp EEEEECSTTSSH
T ss_pred CEEEECcCCCCH
Confidence 589999999994
No 111
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=20.53 E-value=2.3e+02 Score=21.87 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCceEEEEccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEEccCCchhhHH
Q 028092 50 QPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHA 103 (214)
Q Consensus 50 ~~GdlfViRNaGN~v~~~~~~~~~~~asleyAv~~L~v~~IvV~GHt~CGav~a 103 (214)
.++|..+-++-.+-+... -|+-.+...|+++|+|+|=.--.-|.+
T Consensus 71 ~~~d~v~~K~~~saf~~t---------~l~~~L~~~gi~~viv~G~~td~CV~~ 115 (155)
T cd01014 71 LEGETVIEKTVPNAFYGT---------DLEEWLREAGIDHLVICGAMTEMCVDT 115 (155)
T ss_pred CCCCEEEeCCCCCCcCCC---------CHHHHHHHCCCCEEEEEeeccchhHHH
Confidence 467766667654443321 345556789999999999765444433
No 112
>PRK14428 acylphosphatase; Provisional
Probab=20.52 E-value=1.5e+02 Score=21.71 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.3
Q ss_pred ceEEEEEEEEcCCCeEEEeec
Q 028092 172 ALSLHGGYYNFVDCTFEKWTL 192 (214)
Q Consensus 172 ~l~v~G~~YDi~tG~v~~~~~ 192 (214)
++.|.||+-+...|.|+....
T Consensus 33 ~lgL~G~V~N~~dGsVei~~q 53 (97)
T PRK14428 33 RLGVQGWVRNCRDGSVELEAQ 53 (97)
T ss_pred HcCCEEEEEECCCCEEEEEEE
Confidence 357999999999999886543
No 113
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.09 E-value=55 Score=32.13 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=13.4
Q ss_pred CCceEEEEccCCchhhHH
Q 028092 86 KVENILVIGHSRCGGIHA 103 (214)
Q Consensus 86 ~v~~IvV~GHt~CGav~a 103 (214)
|-+|||||||----.+.-
T Consensus 356 gkkhivvcghityesvsh 373 (1103)
T KOG1420|consen 356 GKKHIVVCGHITYESVSH 373 (1103)
T ss_pred CCeeEEEecceeHHHHHH
Confidence 669999999966555543
Done!