Query 028093
Match_columns 214
No_of_seqs 202 out of 289
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02179 BAG: BAG domain; Int 99.7 9.2E-17 2E-21 118.0 7.6 72 87-164 2-76 (76)
2 smart00264 BAG BAG domains, pr 99.7 2.5E-16 5.4E-21 117.0 7.8 73 86-164 4-79 (79)
3 KOG4361 BCL2-associated athano 99.5 4.7E-16 1E-20 142.9 -1.6 197 5-213 88-294 (344)
4 cd01807 GDX_N ubiquitin-like d 99.5 1E-14 2.2E-19 105.4 5.2 53 1-53 21-73 (74)
5 cd01797 NIRF_N amino-terminal 99.5 3E-14 6.5E-19 105.2 5.3 54 1-54 23-76 (78)
6 PF00240 ubiquitin: Ubiquitin 99.5 5.4E-14 1.2E-18 99.3 5.8 53 1-53 16-68 (69)
7 cd01793 Fubi Fubi ubiquitin-li 99.5 4.5E-14 9.8E-19 102.2 5.2 52 1-52 19-70 (74)
8 cd01798 parkin_N amino-termina 99.5 5.2E-14 1.1E-18 100.6 5.1 51 1-51 19-69 (70)
9 cd01813 UBP_N UBP ubiquitin pr 99.5 4.8E-14 1.1E-18 103.1 4.9 52 1-52 20-74 (74)
10 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 6E-14 1.3E-18 103.9 5.1 51 1-51 21-74 (75)
11 cd01794 DC_UbP_C dendritic cel 99.5 6E-14 1.3E-18 101.6 4.9 51 1-51 19-69 (70)
12 cd01812 BAG1_N Ubiquitin-like 99.5 7.1E-14 1.5E-18 99.1 5.0 52 1-52 20-71 (71)
13 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 1.5E-13 3.1E-18 100.6 5.0 50 1-50 22-71 (73)
14 cd01796 DDI1_N DNA damage indu 99.4 2.2E-13 4.8E-18 98.4 4.8 50 1-50 20-70 (71)
15 cd01808 hPLIC_N Ubiquitin-like 99.4 3.9E-13 8.5E-18 96.4 5.0 51 1-51 20-70 (71)
16 cd01810 ISG15_repeat2 ISG15 ub 99.4 4.2E-13 9.1E-18 97.1 5.2 52 1-52 19-70 (74)
17 cd01809 Scythe_N Ubiquitin-lik 99.4 5E-13 1.1E-17 94.6 5.3 51 1-51 21-71 (72)
18 cd01804 midnolin_N Ubiquitin-l 99.4 4.6E-13 1E-17 98.4 5.0 51 1-52 22-72 (78)
19 cd01800 SF3a120_C Ubiquitin-li 99.4 7.2E-13 1.6E-17 96.6 5.7 53 1-53 18-70 (76)
20 cd01805 RAD23_N Ubiquitin-like 99.4 7.8E-13 1.7E-17 95.4 5.6 52 1-52 21-74 (77)
21 PTZ00044 ubiquitin; Provisiona 99.4 7.9E-13 1.7E-17 95.3 5.1 52 1-52 21-72 (76)
22 cd01806 Nedd8 Nebb8-like ubiq 99.3 2E-12 4.3E-17 92.4 5.6 52 1-52 21-72 (76)
23 cd01803 Ubiquitin Ubiquitin. U 99.3 2.2E-12 4.8E-17 92.2 5.1 52 1-52 21-72 (76)
24 cd01802 AN1_N ubiquitin-like d 99.3 2.1E-12 4.6E-17 100.3 5.3 52 1-52 48-99 (103)
25 cd01792 ISG15_repeat1 ISG15 ub 99.3 2.4E-12 5.2E-17 94.7 4.7 53 1-53 23-77 (80)
26 cd01790 Herp_N Homocysteine-re 99.3 3.4E-12 7.4E-17 95.3 4.7 51 1-51 24-78 (79)
27 cd01799 Hoil1_N Ubiquitin-like 99.2 2.2E-11 4.8E-16 89.5 4.6 49 1-50 23-73 (75)
28 cd01769 UBL Ubiquitin-like dom 99.2 3.6E-11 7.9E-16 83.3 5.4 51 1-51 18-68 (69)
29 smart00213 UBQ Ubiquitin homol 99.1 4.3E-11 9.4E-16 82.0 4.1 45 1-45 20-64 (64)
30 cd01814 NTGP5 Ubiquitin-like N 99.0 2.4E-10 5.1E-15 90.6 5.2 59 1-59 26-97 (113)
31 cd01795 USP48_C USP ubiquitin- 99.0 3.2E-10 7E-15 88.4 5.8 52 1-52 25-77 (107)
32 cd01789 Alp11_N Ubiquitin-like 99.0 4.8E-10 1E-14 83.7 5.6 52 1-52 23-81 (84)
33 KOG0010 Ubiquitin-like protein 99.0 4.8E-10 1E-14 106.9 4.5 53 1-53 35-87 (493)
34 cd01763 Sumo Small ubiquitin-r 98.9 1.5E-09 3.2E-14 81.3 5.9 51 1-51 32-82 (87)
35 TIGR00601 rad23 UV excision re 98.9 1E-09 2.2E-14 102.4 5.6 53 1-53 21-76 (378)
36 KOG0005 Ubiquitin-like protein 98.9 5.7E-10 1.2E-14 79.9 2.5 49 2-50 22-70 (70)
37 KOG0004 Ubiquitin/40S ribosoma 98.8 1.6E-09 3.4E-14 90.0 2.6 51 2-52 22-72 (156)
38 PF14560 Ubiquitin_2: Ubiquiti 98.8 6.3E-09 1.4E-13 77.5 4.8 52 1-52 24-83 (87)
39 KOG0003 Ubiquitin/60s ribosoma 98.6 3.2E-09 6.9E-14 84.0 -1.5 51 2-52 22-72 (128)
40 PF11976 Rad60-SLD: Ubiquitin- 98.5 1.7E-07 3.8E-12 66.7 5.1 50 1-50 21-71 (72)
41 cd01801 Tsc13_N Ubiquitin-like 98.5 1.9E-07 4.1E-12 68.2 5.0 49 1-49 23-74 (77)
42 KOG0011 Nucleotide excision re 98.3 4.1E-07 8.9E-12 83.6 4.4 53 2-54 22-76 (340)
43 KOG0001 Ubiquitin and ubiquiti 98.3 2.1E-06 4.5E-11 58.3 5.7 52 2-53 21-72 (75)
44 cd00196 UBQ Ubiquitin-like pro 98.2 2.6E-06 5.7E-11 54.3 5.2 51 1-51 18-68 (69)
45 KOG4248 Ubiquitin-like protein 98.2 1.2E-06 2.6E-11 89.8 4.6 55 1-56 23-77 (1143)
46 KOG1872 Ubiquitin-specific pro 98.1 3.9E-06 8.5E-11 80.1 5.1 53 2-54 25-77 (473)
47 PF13881 Rad60-SLD_2: Ubiquiti 98.1 8.4E-06 1.8E-10 64.4 5.7 58 1-58 24-94 (111)
48 PLN02560 enoyl-CoA reductase 98.0 1E-05 2.2E-10 73.9 5.3 50 1-50 24-81 (308)
49 cd01788 ElonginB Ubiquitin-lik 97.6 7.5E-05 1.6E-09 59.7 4.8 52 1-52 22-80 (119)
50 KOG4361 BCL2-associated athano 97.6 3.1E-05 6.7E-10 71.9 2.2 61 84-151 284-344 (344)
51 KOG0006 E3 ubiquitin-protein l 97.0 0.00062 1.4E-08 63.1 3.7 53 2-54 25-78 (446)
52 PF11543 UN_NPL4: Nuclear pore 96.5 0.0024 5.3E-08 47.5 2.8 49 1-50 24-78 (80)
53 KOG3206 Alpha-tubulin folding 96.4 0.0065 1.4E-07 53.4 5.5 54 1-54 23-83 (234)
54 KOG0013 Uncharacterized conser 95.4 0.017 3.6E-07 50.9 3.8 50 2-51 168-217 (231)
55 PF10302 DUF2407: DUF2407 ubiq 95.1 0.027 5.8E-07 43.5 3.6 43 1-43 24-68 (97)
56 PF15044 CLU_N: Mitochondrial 95.0 0.046 1E-06 40.3 4.6 55 1-55 5-61 (76)
57 PF11470 TUG-UBL1: GLUT4 regul 94.6 0.074 1.6E-06 38.4 4.6 49 1-49 17-65 (65)
58 PF08817 YukD: WXG100 protein 94.1 0.055 1.2E-06 39.5 3.1 49 2-50 24-79 (79)
59 KOG1769 Ubiquitin-like protein 93.4 0.2 4.4E-06 39.2 5.4 50 2-51 42-91 (99)
60 KOG3493 Ubiquitin-like protein 93.2 0.024 5.2E-07 41.5 -0.1 49 1-49 22-70 (73)
61 KOG4495 RNA polymerase II tran 92.4 0.1 2.2E-06 41.0 2.4 41 1-41 22-64 (110)
62 KOG4583 Membrane-associated ER 86.6 0.24 5.3E-06 46.4 0.5 39 2-40 33-73 (391)
63 PF00789 UBX: UBX domain; Int 79.1 5 0.00011 28.8 4.8 49 1-49 27-80 (82)
64 COG5227 SMT3 Ubiquitin-like pr 77.6 3.3 7.1E-05 32.3 3.6 48 1-48 45-92 (103)
65 KOG1639 Steroid reductase requ 73.3 5.6 0.00012 36.3 4.5 50 1-50 23-77 (297)
66 TIGR00244 transcriptional regu 69.5 13 0.00029 31.0 5.6 40 97-137 84-123 (147)
67 cd01770 p47_UBX p47-like ubiqu 69.2 12 0.00025 27.6 4.7 46 1-46 25-74 (79)
68 PF12754 Blt1: Cell-cycle cont 68.9 1.6 3.4E-05 40.5 0.0 41 1-41 104-159 (309)
69 cd01811 OASL_repeat1 2'-5' oli 68.9 13 0.00028 28.1 4.8 51 1-52 21-76 (80)
70 PF14836 Ubiquitin_3: Ubiquiti 66.4 16 0.00034 28.1 5.0 47 2-49 25-77 (88)
71 cd06406 PB1_P67 A PB1 domain i 64.8 8.1 0.00018 29.1 3.1 27 2-28 22-48 (80)
72 COG1327 Predicted transcriptio 63.5 22 0.00047 30.1 5.7 68 95-165 82-149 (156)
73 KOG0012 DNA damage inducible p 63.5 7.1 0.00015 37.1 3.1 50 3-52 25-76 (380)
74 PF02017 CIDE-N: CIDE-N domain 62.6 23 0.00051 26.5 5.2 50 1-52 21-72 (78)
75 PF14732 UAE_UbL: Ubiquitin/SU 61.8 5.6 0.00012 29.9 1.8 51 1-51 9-68 (87)
76 smart00166 UBX Domain present 57.3 30 0.00066 24.9 5.0 49 1-49 25-78 (80)
77 PF10768 FliX: Class II flagel 56.6 21 0.00046 29.5 4.5 35 129-166 55-89 (139)
78 cd00754 MoaD Ubiquitin domain 56.2 30 0.00065 24.2 4.8 46 1-51 26-75 (80)
79 KOG2561 Adaptor protein NUB1, 54.8 3.8 8.1E-05 40.2 -0.2 50 3-52 62-111 (568)
80 COG5417 Uncharacterized small 54.5 10 0.00023 28.5 2.1 31 19-49 50-80 (81)
81 smart00266 CAD Domains present 53.0 52 0.0011 24.5 5.6 49 1-51 19-69 (74)
82 cd01615 CIDE_N CIDE_N domain, 51.8 54 0.0012 24.6 5.6 50 1-52 21-72 (78)
83 PF05008 V-SNARE: Vesicle tran 51.2 54 0.0012 23.3 5.5 38 121-163 3-40 (79)
84 PRK12787 fliX flagellar assemb 49.8 27 0.00058 29.0 4.0 35 129-166 53-87 (138)
85 cd00565 ThiS ThiaminS ubiquiti 49.7 46 0.001 23.0 4.8 45 2-51 16-60 (65)
86 PF10209 DUF2340: Uncharacteri 49.5 45 0.00098 27.1 5.2 54 1-54 27-110 (122)
87 PF11834 DUF3354: Domain of un 49.1 26 0.00056 25.6 3.4 44 1-50 26-69 (69)
88 cd01767 UBX UBX (ubiquitin reg 45.9 62 0.0013 23.0 5.1 48 1-50 23-75 (77)
89 PF14453 ThiS-like: ThiS-like 44.6 36 0.00079 24.0 3.5 40 2-52 17-56 (57)
90 PF11620 GABP-alpha: GA-bindin 44.5 37 0.0008 26.1 3.8 50 2-51 14-63 (88)
91 TIGR02978 phageshock_pspC phag 44.4 42 0.00091 27.0 4.3 40 82-121 81-120 (121)
92 PF14451 Ub-Mut7C: Mut7-C ubiq 44.4 47 0.001 24.7 4.3 37 10-51 38-75 (81)
93 PF05377 FlaC_arch: Flagella a 44.1 1.1E+02 0.0024 21.5 6.0 37 84-128 13-49 (55)
94 cd06539 CIDE_N_A CIDE_N domain 43.1 84 0.0018 23.6 5.5 50 1-52 21-72 (78)
95 PF05531 NPV_P10: Nucleopolyhe 42.8 95 0.0021 23.2 5.7 23 86-108 12-34 (75)
96 PRK10697 DNA-binding transcrip 42.5 50 0.0011 26.5 4.5 39 83-121 79-117 (118)
97 cd01774 Faf1_like2_UBX Faf1 ik 42.5 72 0.0015 23.7 5.1 47 2-49 26-82 (85)
98 PRK06437 hypothetical protein; 41.8 64 0.0014 22.8 4.5 35 12-51 28-62 (67)
99 TIGR01687 moaD_arch MoaD famil 39.1 1.3E+02 0.0028 21.7 6.0 48 1-51 25-83 (88)
100 TIGR01682 moaD molybdopterin c 38.9 1E+02 0.0022 22.0 5.3 46 1-51 27-75 (80)
101 smart00666 PB1 PB1 domain. Pho 38.7 50 0.0011 23.3 3.6 27 1-27 21-47 (81)
102 PF14425 Imm3: Immunity protei 38.0 71 0.0015 25.7 4.7 51 116-166 61-112 (117)
103 PRK06228 F0F1 ATP synthase sub 35.5 46 0.00099 26.9 3.3 17 118-134 113-129 (131)
104 cd06537 CIDE_N_B CIDE_N domain 34.9 1.1E+02 0.0024 23.2 5.0 49 1-52 21-71 (81)
105 TIGR01683 thiS thiamine biosyn 34.8 1E+02 0.0022 21.2 4.6 45 2-51 15-59 (64)
106 PHA03395 p10 fibrous body prot 34.3 65 0.0014 24.8 3.7 23 86-108 12-34 (87)
107 PF11069 DUF2870: Protein of u 33.9 2.3E+02 0.005 22.2 7.5 30 22-51 3-33 (98)
108 PF13019 Telomere_Sde2: Telome 33.8 1E+02 0.0023 26.1 5.3 45 1-45 25-73 (162)
109 PF00564 PB1: PB1 domain; Int 31.7 59 0.0013 22.9 3.1 27 1-27 22-48 (84)
110 cd01773 Faf1_like1_UBX Faf1 ik 30.9 1.6E+02 0.0034 22.1 5.3 49 2-51 27-80 (82)
111 cd06536 CIDE_N_ICAD CIDE_N dom 30.5 1.4E+02 0.0029 22.6 4.9 50 1-52 21-74 (80)
112 PF06705 SF-assemblin: SF-asse 30.1 2.7E+02 0.0059 24.2 7.6 50 87-136 87-136 (247)
113 KOG3650 Predicted coiled-coil 29.8 86 0.0019 25.0 3.8 30 133-162 45-74 (120)
114 cd06411 PB1_p51 The PB1 domain 29.5 64 0.0014 24.2 3.0 26 2-27 18-43 (78)
115 PF04380 BMFP: Membrane fusoge 28.8 2.3E+02 0.005 20.8 5.9 35 103-137 36-70 (79)
116 TIGR02958 sec_mycoba_snm4 secr 28.8 41 0.00089 32.5 2.3 26 26-51 54-79 (452)
117 cd06538 CIDE_N_FSP27 CIDE_N do 28.0 1.7E+02 0.0036 22.1 5.0 50 1-52 21-71 (79)
118 PRK08364 sulfur carrier protei 26.9 1.9E+02 0.004 20.4 4.9 33 14-51 33-65 (70)
119 PF09429 Wbp11: WW domain bind 26.4 89 0.0019 23.1 3.3 34 124-157 40-73 (78)
120 cd05992 PB1 The PB1 domain is 25.6 1.1E+02 0.0024 21.3 3.6 27 1-27 21-47 (81)
121 PRK11130 moaD molybdopterin sy 24.8 2.7E+02 0.0058 20.0 5.6 46 1-51 26-76 (81)
122 PF02597 ThiS: ThiS family; I 24.7 98 0.0021 21.3 3.1 49 1-51 22-72 (77)
123 PF02037 SAP: SAP domain; Int 24.4 1.3E+02 0.0027 18.7 3.2 27 127-157 9-35 (35)
124 KOG4250 TANK binding protein k 24.2 1.2E+02 0.0026 31.5 4.7 49 2-52 336-386 (732)
125 cd01772 SAKS1_UBX SAKS1-like U 24.1 1.9E+02 0.0042 20.8 4.7 48 1-49 25-77 (79)
126 PRK06488 sulfur carrier protei 23.2 2.3E+02 0.0049 19.4 4.7 45 2-51 16-60 (65)
127 PF09269 DUF1967: Domain of un 23.0 48 0.001 23.7 1.3 17 33-49 46-62 (69)
128 PRK05659 sulfur carrier protei 22.9 2.1E+02 0.0047 19.4 4.6 38 13-51 24-61 (66)
129 PF10393 Matrilin_ccoil: Trime 22.6 2.6E+02 0.0056 19.0 4.7 27 82-108 20-46 (47)
130 PLN03217 transcription factor 22.4 1.7E+02 0.0037 22.6 4.2 28 80-107 51-78 (93)
131 cd01771 Faf1_UBX Faf1 UBX doma 22.3 2.7E+02 0.0058 20.4 5.2 47 2-49 26-77 (80)
132 TIGR03595 Obg_CgtA_exten Obg f 21.9 63 0.0014 23.2 1.7 19 32-50 45-63 (69)
133 PRK05863 sulfur carrier protei 21.7 2.1E+02 0.0045 19.9 4.3 37 13-51 24-60 (65)
134 PF07426 Dynactin_p22: Dynacti 21.5 4E+02 0.0087 22.5 6.7 46 93-138 6-51 (174)
135 PF09006 Surfac_D-trimer: Lung 20.9 1.9E+02 0.0042 19.7 3.7 22 88-109 2-23 (46)
No 1
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=99.68 E-value=9.2e-17 Score=117.96 Aligned_cols=72 Identities=42% Similarity=0.595 Sum_probs=67.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHHHH
Q 028093 87 IAGVRAEVDK-LSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDNL 163 (214)
Q Consensus 87 I~~i~~evd~-L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD~~ 163 (214)
|..+..+|+. |.++|..| +++..+++|.+|+|+||+.|++||+|+++| ++|.+||.+|++||++++.||.+
T Consensus 2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~ 75 (76)
T PF02179_consen 2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL 75 (76)
T ss_dssp HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6677789999 99999999 666789999999999999999999999999 89999999999999999999997
Q ss_pred H
Q 028093 164 K 164 (214)
Q Consensus 164 k 164 (214)
|
T Consensus 76 k 76 (76)
T PF02179_consen 76 K 76 (76)
T ss_dssp H
T ss_pred C
Confidence 6
No 2
>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins. BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains
Probab=99.66 E-value=2.5e-16 Score=117.01 Aligned_cols=73 Identities=37% Similarity=0.446 Sum_probs=63.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHHH
Q 028093 86 AIAGVRAEV-DKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDN 162 (214)
Q Consensus 86 aI~~i~~ev-d~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD~ 162 (214)
.|..+..+| ..|.+++..+ .+++.+++|.+|+|+||++|++||+|+++| ++|.+||.+|++||++++.||.
T Consensus 4 ~v~~~~~ev~~~l~~~v~~~------~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~ 77 (79)
T smart00264 4 KINRVLDEVVKKIEKEVQVA------DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDS 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555566 4667777776 678999999999999999999999999999 8999999999999999999998
Q ss_pred HH
Q 028093 163 LK 164 (214)
Q Consensus 163 ~k 164 (214)
++
T Consensus 78 ~~ 79 (79)
T smart00264 78 KK 79 (79)
T ss_pred cC
Confidence 63
No 3
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=99.54 E-value=4.7e-16 Score=142.94 Aligned_cols=197 Identities=30% Similarity=0.397 Sum_probs=171.2
Q ss_pred HHHHHHHHHhCCCCCCc--eEEecCeec-CCcchhhhcCCCCCCEEEEeccccccccCCcccCCCCcchhhhhhchHHHH
Q 028093 5 DLKKAISEKTGLDPQEQ--KVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMR 81 (214)
Q Consensus 5 ~LK~~l~e~tGipp~~Q--KLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~ 81 (214)
+++..+.+.+|+...++ +++|.++++ +....|+.+|+++-|++.++.++.+++.+ ....+......
T Consensus 88 d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~-----------~~~~~~~p~~~ 156 (344)
T KOG4361|consen 88 DLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPDPGSQRAR-----------QLGALVAPAPT 156 (344)
T ss_pred hhhcccccccceeecccccccceecccccccccccccccCcccccceeccChhhcccc-----------ccccccccccc
Confidence 89999999999998887 999999996 78999999999999999999999998776 33344444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhCCCCCCchhhhhHHHHHHH----HHHhhcccccchhhHHHHHHHHHHHH
Q 028093 82 KALQAIAGVRAEVDKLSERVA---SLEVAVNGGTKVPSEELDTSAELLMK----ELLKLDGIEAEGEAKVQRKTEVRRVQ 154 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~---~~e~~v~~~~k~~eke~~~L~E~Lm~----~LlkLD~Ie~~Gd~R~~RK~~VkrVQ 154 (214)
++...++.+..+++++.+++. ..+-.++.+.......+....+.||. .||++|.+..+||+...|+..++|+|
T Consensus 157 q~s~~v~~~~~~t~r~~~~~v~p~~~~~~~~~~~q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q 236 (344)
T KOG4361|consen 157 QTSKNVSDPQLETYRLIGQVVDPEQKELVPNGGGQPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQ 236 (344)
T ss_pred ccccccccccceeeeccccccchhhhhcccCCCCCcCCChhhhhHHHhhhhcchhhhhhcccCCCccccccccccccccc
Confidence 666777777778888888886 77788888888888999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceeeeeecceeccCCCCCCCCCCCCCCCccCCCcccc
Q 028093 155 KFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERF 213 (214)
Q Consensus 155 ~~le~LD~~k~~n~~~~~~~~~~~~~~t~we~fd~~~~s~~~~~~~~~~~~~~~~we~f 213 (214)
++-+..|.++..++..+-+...+..+.+ |+.+-.+.+.+.+|+..|++-+|.+.||-|
T Consensus 237 ~~seaq~~l~~~~s~~~~~~~~~~~a~~-~~~~~~~~~~~~~p~~~~~~~~V~~~~~~~ 294 (344)
T KOG4361|consen 237 AYSEAQDLLKALDSTSNEEQPAAPSAQP-VEVEGPEPGPLQAPPEHPSSLKVQQILEKV 294 (344)
T ss_pred chhhhhhhhhhcccccccccccccccCc-hhhcCCCcCCCCCCcccCCccchhhHhhhh
Confidence 9999999999999987766664344444 999999999999999999999999998865
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.53 E-value=1e-14 Score=105.44 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
+||++||++|++.+|+|+++|||+|+|+.|+|+.+|+.|||++||+|||+..|
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 21 ESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999999764
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.49 E-value=3e-14 Score=105.18 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
.||++||++|++.+|+|+++|||||+||.|+|+.+|+.|||++||+|+|+..+.
T Consensus 23 ~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 23 TKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 489999999999999999999999999999999999999999999999997643
No 6
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.48 E-value=5.4e-14 Score=99.32 Aligned_cols=53 Identities=36% Similarity=0.651 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||++|++.+|+|++.|+|+|+|+.|+|+.+|.+|||++|++|+|+.++
T Consensus 16 ~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 16 DTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp SBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 48999999999999999999999999999999999999999999999998764
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.48 E-value=4.5e-14 Score=102.21 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|+++|||+|+||.|+|+.+|++|||+++++|||+..
T Consensus 19 ~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 19 ETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 8
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.47 E-value=5.2e-14 Score=100.62 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+.|||++||+|||+.
T Consensus 19 ~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 19 TDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred ChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999985
No 9
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.47 E-value=4.8e-14 Score=103.11 Aligned_cols=52 Identities=31% Similarity=0.473 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEe---cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLF---RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLif---kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++.|||||++||||| +||.++|+.+|+.|||++|++||||+.
T Consensus 20 ~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 20 DTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 4899999999999999999999996 999999999999999999999999984
No 10
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.47 E-value=6e-14 Score=103.92 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHh--CCC-CCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKT--GLD-PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~t--Gip-p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||++||++|++++ |++ +++|||||+||.|+|+.+|++|||++|++|||+.
T Consensus 21 ~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 21 YQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 48999999999996 575 9999999999999999999999999999999985
No 11
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.46 E-value=6e-14 Score=101.60 Aligned_cols=51 Identities=27% Similarity=0.437 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+||++||.+|++..|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+.
T Consensus 19 ~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 19 DTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999985
No 12
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.46 E-value=7.1e-14 Score=99.06 Aligned_cols=52 Identities=54% Similarity=0.947 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++.+|+|+++|||+|+|+.|+|+.+|++|||++|++|+++++
T Consensus 20 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 20 ATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 4899999999999999999999999999999999999999999999999975
No 13
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.43 E-value=1.5e-13 Score=100.62 Aligned_cols=50 Identities=28% Similarity=0.259 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.||++||.+|++..|+||++|||||+|+.|+|+.+|.+|||++||+|||.
T Consensus 22 ~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 22 DTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999985
No 14
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.41 E-value=2.2e-13 Score=98.38 Aligned_cols=50 Identities=26% Similarity=0.504 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv 50 (214)
+||++||.+|++.+|+|+++|||+|+||.|+|+ .+|+.|||++||+|||-
T Consensus 20 ~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 20 LELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 589999999999999999999999999999776 78999999999999973
No 15
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.39 E-value=3.9e-13 Score=96.45 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||++||++|++.+|+|+++|||+|+||.|+|+.+|++|||++||+|||+-
T Consensus 20 ~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 20 ASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred ChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 489999999999999999999999999999999999999999999999974
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.39 E-value=4.2e-13 Score=97.12 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+-.
T Consensus 19 ~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 19 QTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999853
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.39 E-value=5e-13 Score=94.56 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||++||++|++.+|+|++.|||+|+|+.|+|+.+|+.||+++||+|||+.
T Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 21 ITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999974
No 18
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.38 E-value=4.6e-13 Score=98.43 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||+.|++.+|+|+++|||+|+||.|+|+ +|.+|||++|++|+|+..
T Consensus 22 ~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 22 ETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 489999999999999999999999999999988 999999999999999875
No 19
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.38 E-value=7.2e-13 Score=96.62 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
+||++||++|++.+|||++.|||+|+|+.|+|+.+|+.|||++|++|+|+...
T Consensus 18 ~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 18 DPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 58999999999999999999999999999999999999999999999999753
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.37 E-value=7.8e-13 Score=95.38 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCC--CCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi--pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++.+|+ |+++|||+|+|+.|+|+.+|++|||++||+|+++..
T Consensus 21 ~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 21 DTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 4899999999999999 999999999999999999999999999999999875
No 21
>PTZ00044 ubiquitin; Provisional
Probab=99.36 E-value=7.9e-13 Score=95.28 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||.+||++|++.+|+|+++|||+|+|+.|+|+.+|+.|||++|++|||+..
T Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 21 NTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 5899999999999999999999999999999999999999999999999864
No 22
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.33 E-value=2e-12 Score=92.36 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++.+|+||+.|||+|.|+.|+|+.+|+.|||++|++|||+-.
T Consensus 21 ~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999864
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.32 E-value=2.2e-12 Score=92.15 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+-.
T Consensus 21 ~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999864
No 24
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.32 E-value=2.1e-12 Score=100.26 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||++|++..|+|+++|||+|+|+.|+|+.+|+.|||++||+|+|+..
T Consensus 48 ~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 48 ETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5899999999999999999999999999999999999999999999999863
No 25
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.30 E-value=2.4e-12 Score=94.72 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE--EecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||++|++.+|+|+++||| +|+|+.|+|+.+|+.|||++|++|+|+.+.
T Consensus 23 ~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 23 MTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 48999999999999999999999 999999999999999999999999999864
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.28 E-value=3.4e-12 Score=95.33 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHhC--CCCCCceEEecCeecCCcchhhhcC--CCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSG--MKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG--ipp~~QKLifkGK~L~d~~~L~~~G--vkdgSki~Lv~ 51 (214)
.||++||++|++..+ .|+++|||||+||.|+|+.+|.+|+ +.+|.+||||-
T Consensus 24 ~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 24 WTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred ChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 489999999999885 4579999999999999999999997 99999999983
No 27
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.18 E-value=2.2e-11 Score=89.51 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCC-CCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMK-DKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~Gvk-dgSki~Lv 50 (214)
+||++||.+|++.+||||++||| |.|+.| +|+.+|+.|||+ +|+++||.
T Consensus 23 ~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 23 MTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 58999999999999999999999 999999 588999999999 88999984
No 28
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.18 E-value=3.6e-11 Score=83.31 Aligned_cols=51 Identities=29% Similarity=0.547 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+||++||++|+..+|+|++.|+|+|+|+.|+|..+|..||+++|+.|+++.
T Consensus 18 ~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 18 DTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999985
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.14 E-value=4.3e-11 Score=81.97 Aligned_cols=45 Identities=31% Similarity=0.544 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKS 45 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgS 45 (214)
+||++||.+|+..+|+|++.|||+|+|+.|+|+.+|++|||++||
T Consensus 20 ~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 20 DTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 489999999999999999999999999999999999999999986
No 30
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.05 E-value=2.4e-10 Score=90.63 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=52.5
Q ss_pred CcHHHHHHHHH-----HHhCCC--CCCceEEecCeecCCcchhhhcC------CCCCCEEEEeccccccccC
Q 028093 1 MMIGDLKKAIS-----EKTGLD--PQEQKVLFRGKEKEDNEHLDVSG------MKDKSKVLLLEELTNKEKK 59 (214)
Q Consensus 1 ~Tv~~LK~~l~-----e~tGip--p~~QKLifkGK~L~d~~~L~~~G------vkdgSki~Lv~~p~s~e~r 59 (214)
.||++||+.|+ +++|+| +++|||||.||.|+|+.+|.+|+ +...+++||+..|...+++
T Consensus 26 dTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~~~~~ 97 (113)
T cd01814 26 TTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKK 97 (113)
T ss_pred hHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCCCCcc
Confidence 48999999999 666777 99999999999999999999999 8888999999987766554
No 31
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.05 E-value=3.2e-10 Score=88.41 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|.+..|+||.+|+|+|.|+.| ||..+|++|||-.||.|+|..+
T Consensus 25 ~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 25 QTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred ccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 489999999999999999999999999999 8999999999999999999874
No 32
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.02 E-value=4.8e-10 Score=83.73 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE-EecCe-----ec-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV-LFRGK-----EK-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL-ifkGK-----~L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||.+|+..+|+||+.||| +|.|+ .| +|..+|..||+++|++||++..
T Consensus 23 ~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 23 LTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred CcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 58999999999999999999999 68999 56 7899999999999999999874
No 33
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.96 E-value=4.8e-10 Score=106.91 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
+||.+||+.|+...++|+++|+|||.||.|+|+.+|..|||+||.+||||.+.
T Consensus 35 ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 35 SSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred hHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 48999999999999999999999999999999999999999999999999863
No 34
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.95 E-value=1.5e-09 Score=81.29 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+||..||.+++++.|+|+++|||+|.|+.|+++.++.+||+++|++|+++-
T Consensus 32 ~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 32 TPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 478999999999999999999999999999999999999999999999974
No 35
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=1e-09 Score=102.41 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhC---CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTG---LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG---ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||++|++.+| +|+++|||||+||.|+|+.+|..|||++|++|++|...
T Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 21 ETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred ChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 489999999999999 99999999999999999999999999999999998653
No 36
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.7e-10 Score=79.94 Aligned_cols=49 Identities=24% Similarity=0.491 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
+|..+|+.++++.||||.+|||||.||++.|+.+-..|++.-||.+|++
T Consensus 22 kverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 22 KVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred HHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5788999999999999999999999999999999999999999999985
No 37
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.6e-09 Score=90.04 Aligned_cols=51 Identities=29% Similarity=0.555 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
||..+|..|++.+||||++|||||.|++|+|..+|++|||+..|+|+|+-.
T Consensus 22 ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred cHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 789999999999999999999999999999999999999999999999853
No 38
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.80 E-value=6.3e-09 Score=77.51 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec----Ce---ec-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR----GK---EK-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk----GK---~L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||.+|+..+|+||+.|+|.|. |. .+ +|..+|..||+++|++||++..
T Consensus 24 ~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~ 83 (87)
T PF14560_consen 24 ITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDT 83 (87)
T ss_dssp SBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence 58999999999999999999999887 11 23 6899999999999999999875
No 39
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.2e-09 Score=84.02 Aligned_cols=51 Identities=29% Similarity=0.550 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
||..||..+..+.||||++|+|+|.||+|+|..+|..||++..|+||++-.
T Consensus 22 ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred hHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 789999999999999999999999999999999999999999999999853
No 40
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.52 E-value=1.7e-07 Score=66.66 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHhCCCC-CCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDP-QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp-~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
++|+.|....++..|+|+ +.++|+|.|+.|+++.++.++|+++|+.|.++
T Consensus 21 ~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 21 TTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp SCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 478999999999999999 99999999999999999999999999999986
No 41
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.50 E-value=1.9e-07 Score=68.21 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHhC-CCCCCceE--EecCeecCCcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTG-LDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-ipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~L 49 (214)
.||++||..|+...+ +++++||| .|+|+.|.|+.+|..|||++|++|++
T Consensus 23 aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 23 ATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred ccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 489999999999986 57999999 59999999999999999999999886
No 42
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.35 E-value=4.1e-07 Score=83.56 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHhC--CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093 2 MIGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 2 Tv~~LK~~l~e~tG--ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
||.++|+.|+...| .|++.|||||.||.|.|+.++..|+|++++-|.+|.+..
T Consensus 22 tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 22 TVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred hHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 79999999999999 999999999999999999999999999999998887643
No 43
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.28 E-value=2.1e-06 Score=58.34 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
+|..+|.+++...|+|+..|+|+|+|+.|.|..+|..|+|..+++++|+...
T Consensus 21 ~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 21 TIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred HHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence 6788999999999999999999999999999999999999999999998753
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.24 E-value=2.6e-06 Score=54.31 Aligned_cols=51 Identities=31% Similarity=0.580 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++|+..|.++.|+++..|+|++.|..+++...+..+++.+|+.|+++.
T Consensus 18 ~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 18 TTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 489999999999999999999999999999988888999999999999874
No 45
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=89.80 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK 56 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s~ 56 (214)
+||.+||..+.+.+.|+.+.|||||.|++|.|+..+.+||| ||-+|||++.|-.+
T Consensus 23 ~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 23 MTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred HHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 58999999999999999999999999999999999999999 99999999985433
No 46
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.9e-06 Score=80.14 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
|...||.+|...||+||+.||++++|+.+.|+--+...+||+|.|||||+++.
T Consensus 25 t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 25 TPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred chHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 67889999999999999999999999999888889999999999999999754
No 47
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.06 E-value=8.4e-06 Score=64.42 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHh--C---C--CCCCceEEecCeecCCcchhhhcCCCCCC------EEEEecccccccc
Q 028093 1 MMIGDLKKAISEKT--G---L--DPQEQKVLFRGKEKEDNEHLDVSGMKDKS------KVLLLEELTNKEK 58 (214)
Q Consensus 1 ~Tv~~LK~~l~e~t--G---i--pp~~QKLifkGK~L~d~~~L~~~GvkdgS------ki~Lv~~p~s~e~ 58 (214)
+||++||+.|...- + - .++..||||.||.|+|+.+|.+|++.-|. .+||+..|...+.
T Consensus 24 ~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~~~~~ 94 (111)
T PF13881_consen 24 TTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPNAPEP 94 (111)
T ss_dssp SBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SSSSSS
T ss_pred ChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCCCCCc
Confidence 58999999998631 1 1 25779999999999999999999999877 6888887765544
No 48
>PLN02560 enoyl-CoA reductase
Probab=97.97 E-value=1e-05 Score=73.94 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHhCC-CCCCceEEec---C----eecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGL-DPQEQKVLFR---G----KEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi-pp~~QKLifk---G----K~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.||++||++|+++.|+ ++++|||+|. | +.|+|+.+|.++||++|++|++-
T Consensus 24 aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 24 ATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred CcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 5899999999999997 8999999982 4 47889999999999999998875
No 49
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.65 E-value=7.5e-05 Score=59.72 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCC-------CCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-------KDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-------kdgSki~Lv~~ 52 (214)
+||-+||++|+..+..||++|||+-.+-.|+|..+|+.||+ ++-..|-|.-.
T Consensus 22 ~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 22 TTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred ccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 48999999999999999999999933444799999999999 66778877643
No 50
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=97.59 E-value=3.1e-05 Score=71.93 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 028093 84 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVR 151 (214)
Q Consensus 84 ~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~Vk 151 (214)
...|..|.++|..|.+.|..| +++..++.|.+|.|+|.++||+||+|++. ++|..||.+|+
T Consensus 284 ~~~V~~~~~~~~~~~~~v~sf------~g~~~~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~ 344 (344)
T KOG4361|consen 284 SLKVQQILEKVLELEGAVESF------EGPRTDKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR 344 (344)
T ss_pred ccchhhHhhhhhhhhhhhhhc------CCCccchhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence 457788888999999999999 78889999999999999999999999999 99999999874
No 51
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00062 Score=63.15 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe-cccc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL-EELT 54 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv-~~p~ 54 (214)
+|.+||+.++..+|||+++.|+||.||+|.++.++..|.+..-|-+|+| -.|-
T Consensus 25 ~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~ 78 (446)
T KOG0006|consen 25 SIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW 78 (446)
T ss_pred CHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence 5889999999999999999999999999999999999999999988887 3443
No 52
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.46 E-value=0.0024 Score=47.55 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCe----ec--CCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGK----EK--EDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK----~L--~d~~~L~~~GvkdgSki~Lv 50 (214)
+|+++|+++|.+.+++|+..|.|. ..+ .+ .+..+|+.+||+.|+-|+|-
T Consensus 24 ~t~~~L~~kI~~~l~~~~~~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 24 STLSDLKEKISEQLSIPDSSQSLS-KDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp SBHHHHHHHHHHHS---TTT---B-SSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccHHHHHHHHHHHcCCCCcceEEE-ecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 489999999999999999988773 322 34 47899999999999999873
No 53
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0065 Score=53.37 Aligned_cols=54 Identities=13% Similarity=0.363 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE-EecC-----eec-CCcchhhhcCCCCCCEEEEecccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV-LFRG-----KEK-EDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL-ifkG-----K~L-~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
+|+.+||.+|+-.||.+++.++| +|+| -.| ++++.|..|++.||..||++...+
T Consensus 23 ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~ 83 (234)
T KOG3206|consen 23 LTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNA 83 (234)
T ss_pred CcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCc
Confidence 58999999999999999999999 8887 246 688999999999999999998644
No 54
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.017 Score=50.86 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|++++|..|..+.|+++-.|+++|.|+.+-|+..|..|++..|++-.+-+
T Consensus 168 tv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 168 TVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred cHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 78999999999999999999999999999999999999999997765543
No 55
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.07 E-value=0.027 Score=43.55 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHhCCC--CCCceEEecCeecCCcchhhhcCCCC
Q 028093 1 MMIGDLKKAISEKTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKD 43 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGip--p~~QKLifkGK~L~d~~~L~~~Gvkd 43 (214)
.|+..||++|-+..+=+ -..+||||.||.|.|...|...-...
T Consensus 24 ~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~ 68 (97)
T PF10302_consen 24 TTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP 68 (97)
T ss_pred ccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence 48999999999998444 35579999999999999888764444
No 56
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.03 E-value=0.046 Score=40.31 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhC-CCCCCceEEecCeecCCcchhhhc-CCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTG-LDPQEQKVLFRGKEKEDNEHLDVS-GMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-ipp~~QKLifkGK~L~d~~~L~~~-GvkdgSki~Lv~~p~s 55 (214)
.+|.||++.|..... ..-....|.|+|+.|++-..|... |+++|++|.|+++|..
T Consensus 5 d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 5 DTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred hHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 368899999888765 335678999999999988888877 8999999999999886
No 57
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.59 E-value=0.074 Score=38.38 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~L 49 (214)
+|+.++=+..+.+.|+++++-.|.|++|.+|-..++.-.|+-+|+++-|
T Consensus 17 ~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 17 TTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp SBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4678888999999999999999999999999999999999999999865
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.07 E-value=0.055 Score=39.50 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHhCCCCCC------ceEE-ecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 2 MIGDLKKAISEKTGLDPQE------QKVL-FRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~------QKLi-fkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
++.+|...|.+..+.+... -+|. -+|..|+++.+|.++||.||+.++|.
T Consensus 24 pv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 24 PVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp BTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred cHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 5778888888888875322 3566 67888999999999999999999873
No 59
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.2 Score=39.19 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
++.-|.+.-+++.|++.+..|++|.|+.+....+=...++++|+.|-++.
T Consensus 42 ~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 42 PLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred hHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 46678888999999999999999999999998999999999999998775
No 60
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.024 Score=41.52 Aligned_cols=49 Identities=29% Similarity=0.266 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~L 49 (214)
.||||+|+.|+..||-.|+...|=--+-..+|.-+|+.|.|++|--+-|
T Consensus 22 DtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 22 DTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 3899999999999999999887763333459999999999999976544
No 61
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=92.40 E-value=0.1 Score=40.96 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCe-e-cCCcchhhhcCC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGK-E-KEDNEHLDVSGM 41 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK-~-L~d~~~L~~~Gv 41 (214)
.||-+||.+|+..+-=|++.|||.-=.- + |+|..+|..||.
T Consensus 22 ~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 22 STVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred ccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 4899999999999999999999976333 4 599999999965
No 62
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=0.24 Score=46.44 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhCCC--CCCceEEecCeecCCcchhhhcC
Q 028093 2 MIGDLKKAISEKTGLD--PQEQKVLFRGKEKEDNEHLDVSG 40 (214)
Q Consensus 2 Tv~~LK~~l~e~tGip--p~~QKLifkGK~L~d~~~L~~~G 40 (214)
|+++||..|+...-=. +.+|||||.||.|.|...|.+.=
T Consensus 33 tv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 33 TVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred hHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 7999999998875333 46799999999999988887543
No 63
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=79.07 E-value=5 Score=28.81 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHhCCCCCC-ceEE--ecCeecC-Cc-chhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQE-QKVL--FRGKEKE-DN-EHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~-QKLi--fkGK~L~-d~-~~L~~~GvkdgSki~L 49 (214)
.|+.+|...|....+.+... ..|+ |-.+.+. ++ .+|.++|+-+++.|+|
T Consensus 27 ~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 27 DTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred chHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 37899999999888888765 7775 6667773 33 7999999999998887
No 64
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=77.62 E-value=3.3 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVL 48 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~ 48 (214)
+||.-|-...+.+.|-..+..|++|.|+.++-+.+=..++..++..|-
T Consensus 45 T~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iE 92 (103)
T COG5227 45 TTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIE 92 (103)
T ss_pred chHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHH
Confidence 467788888999999999999999999999988888888888886543
No 65
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=73.34 E-value=5.6 Score=36.27 Aligned_cols=50 Identities=28% Similarity=0.324 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHH-HhCCCCCCceEE----ecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISE-KTGLDPQEQKVL----FRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e-~tGipp~~QKLi----fkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.|++|+++.+.. ...+-|..+|+- -+||.+-|+.+|++||+.+|.+|.+-
T Consensus 23 ~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 23 ETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 478999866554 456667555554 46999999999999999999888774
No 66
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=69.50 E-value=13 Score=31.04 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccc
Q 028093 97 LSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIE 137 (214)
Q Consensus 97 L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie 137 (214)
|..=|..+|..+...+ ..+-.-..+.|++|..|-+||.|.
T Consensus 84 ie~~v~~Ie~~l~~~~-~~EI~S~~IGe~Vm~~L~~lD~VA 123 (147)
T TIGR00244 84 LEHAINHIEAQLRAQG-EREVPSELIGQMVMQYLKKLDEVA 123 (147)
T ss_pred HHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhhcCcch
Confidence 3333444454454433 235556789999999999999983
No 67
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=69.19 E-value=12 Score=27.56 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHhCCC-CCCceEE--ecCeec-CCcchhhhcCCCCCCE
Q 028093 1 MMIGDLKKAISEKTGLD-PQEQKVL--FRGKEK-EDNEHLDVSGMKDKSK 46 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGip-p~~QKLi--fkGK~L-~d~~~L~~~GvkdgSk 46 (214)
.||++|...+....+-+ .....|+ |=.|.+ +++.+|.++|+.+.+-
T Consensus 25 ~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 25 HRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 37899999999876543 3556776 778888 6799999999997543
No 68
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=68.88 E-value=1.6 Score=40.46 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHH----------HhCCCCCCce-----EEecCeecCCcchhhhcCC
Q 028093 1 MMIGDLKKAISE----------KTGLDPQEQK-----VLFRGKEKEDNEHLDVSGM 41 (214)
Q Consensus 1 ~Tv~~LK~~l~e----------~tGipp~~QK-----LifkGK~L~d~~~L~~~Gv 41 (214)
+||.+||..+++ .+++|.+..| |+|+-|.+-|..+|.+..-
T Consensus 104 tSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 104 TSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp --------------------------------------------------------
T ss_pred CcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 478999999999 9999999999 9999999977777765543
No 69
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=68.85 E-value=13 Score=28.09 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec---Ce-e-cCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR---GK-E-KEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk---GK-~-L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++|..||..|...-|++- .|||-|- |+ + |.+..+|..|||=-+-.|.|++.
T Consensus 21 ~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 21 SPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred chHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 368899999999999975 9999984 33 2 48999999999998888888874
No 70
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=66.41 E-value=16 Score=28.06 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEec----Cee-c-CCcchhhhcCCCCCCEEEE
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFR----GKE-K-EDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifk----GK~-L-~d~~~L~~~GvkdgSki~L 49 (214)
||+.+.+.+.+...| +.+-||--+ +-+ | +.+.+|.++||.+|-.|++
T Consensus 25 TI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 25 TIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp BHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred hHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 899999999999999 777899543 233 4 5667999999999965544
No 71
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=64.75 E-value=8.1 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCe
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGK 28 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK 28 (214)
++.+|..+|.++.++|++..+|-|+-.
T Consensus 22 ~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 22 SYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred CHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 688999999999999999999999854
No 72
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=63.54 E-value=22 Score=30.07 Aligned_cols=68 Identities=26% Similarity=0.371 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 028093 95 DKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKA 165 (214)
Q Consensus 95 d~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~k~ 165 (214)
+.|..-++.+|..+.+.+ ..|-.-..+.|++|..|-+||.|.-=-=|-.-|. -+.|-.+.+.|..+..
T Consensus 82 e~ie~~v~~ie~~Lr~~g-~~EV~S~~IG~~VM~~Lk~lD~VAYvRFASVYr~--F~dv~~F~e~i~~l~~ 149 (156)
T COG1327 82 EQIEEAVSHIERQLRSSG-EREVPSKEIGELVMEELKKLDEVAYVRFASVYRS--FKDVDDFEEEIEELTK 149 (156)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhcchhhhhhhhhHhcc--cCCHHHHHHHHHHHHh
Confidence 445555566666666554 3466667899999999999999843111111110 2345556666666554
No 73
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=63.48 E-value=7.1 Score=37.11 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCCCceEEecCeecC-C-cchhhhcCCCCCCEEEEecc
Q 028093 3 IGDLKKAISEKTGLDPQEQKVLFRGKEKE-D-NEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 3 v~~LK~~l~e~tGipp~~QKLifkGK~L~-d-~~~L~~~GvkdgSki~Lv~~ 52 (214)
+..|+.+++-.+|++....-|+|++..+. + ...|..||+++++.|++=.+
T Consensus 25 L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 25 LNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred hhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 45788999999999999999999999994 4 68899999999999988654
No 74
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=62.57 E-value=23 Score=26.50 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEe--cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLif--kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.++..+|+.+.-+|+- -|-+.+|++++.. +.++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~~ 72 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEK 72 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEES
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEECC
Confidence 3789999999999999987777755 6778898888865 477777777663
No 75
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=61.77 E-value=5.6 Score=29.88 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=28.4
Q ss_pred CcHHHHHHHH-HHHhCCCCC----CceEEecCee---c-CCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAI-SEKTGLDPQ----EQKVLFRGKE---K-EDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l-~e~tGipp~----~QKLifkGK~---L-~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+++|-+.+ ....|+... ..++||..-. - -.+.+|+.+||++||.|.+..
T Consensus 9 ~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 9 MTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp -BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred CcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 4677777753 446666542 3466666554 1 246789999999999887765
No 76
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=57.31 E-value=30 Score=24.86 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeecCC---cchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEKED---NEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L~d---~~~L~~~GvkdgSki~L 49 (214)
.|+.+|..-+....|.+.....|+ |-.|.+.+ +.+|.++|+-..+.|+|
T Consensus 25 ~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 25 DTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 378999999977777776677774 56667742 57999999998877765
No 77
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=56.58 E-value=21 Score=29.55 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=28.2
Q ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028093 129 ELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAI 166 (214)
Q Consensus 129 ~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~k~~ 166 (214)
.||.|=+| .|.-..||..|+|=..+|+.||.+|+.
T Consensus 55 aLLALQ~v---dd~~erRrRav~Rg~~lLD~Ld~Lk~~ 89 (139)
T PF10768_consen 55 ALLALQEV---DDPTERRRRAVRRGHDLLDVLDELKIG 89 (139)
T ss_pred HHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777 345566999999999999999999964
No 78
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=56.21 E-value=30 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHhCC----CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGL----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi----pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|.+.|.+..+- ......+..+|+.... ..=|++|+.|.++-
T Consensus 26 ~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~p 75 (80)
T cd00754 26 ATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIP 75 (80)
T ss_pred CcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeC
Confidence 4889999999887542 3445667778877762 34589999999875
No 79
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.82 E-value=3.8 Score=40.21 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 3 IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 3 v~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
-.+|...++...||+-...|.|-.||.+.-..+|.+-|++.+-++|+++.
T Consensus 62 Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 62 GSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred cHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 35788999999999999999999999999999999999999999888875
No 80
>COG5417 Uncharacterized small protein [Function unknown]
Probab=54.50 E-value=10 Score=28.54 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=27.5
Q ss_pred CCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093 19 QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 19 ~~QKLifkGK~L~d~~~L~~~GvkdgSki~L 49 (214)
...|..-|++.|-++.-|..|||.||+.+-+
T Consensus 50 ~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 50 TQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred CEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4579999999998889999999999998765
No 81
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=53.03 E-value=52 Score=24.47 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE-Ee-cCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV-LF-RGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL-if-kGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+.+|+.+.+++.+++...-+| ++ -|-+.+|+++...+ -++..+|++.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL--p~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL--PDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC--CCCcEEEEEc
Confidence 37899999999999999777777 44 78888999988764 6777777765
No 82
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=51.85 E-value=54 Score=24.60 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEe--cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLif--kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.+++.++|...-+|+. -|-+.+|+++...+ -++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL--p~nT~l~~l~~ 72 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL--PDNTVLMLLEP 72 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC--CCCcEEEEECC
Confidence 3789999999999999866666643 67788999988764 67777777663
No 83
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=51.22 E-value=54 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028093 121 TSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNL 163 (214)
Q Consensus 121 ~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~ 163 (214)
.+.+.+.+.|-.+.... | .+|+.+|++|+..|+.++.+
T Consensus 3 ~l~~~i~~~l~~~~~~~--~---~~r~~~i~~~e~~l~ea~~~ 40 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLS--G---EQRKSLIREIERDLDEAEEL 40 (79)
T ss_dssp HHHHHHHHHHHHGGGS---C---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC--h---HHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444221 2 36777777777777665554
No 84
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=49.75 E-value=27 Score=28.96 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=27.5
Q ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028093 129 ELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAI 166 (214)
Q Consensus 129 ~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~k~~ 166 (214)
.||.|-+| +|.-..||-.|+|=+.+|+.||.+|+.
T Consensus 53 ALLALQ~v---dd~~eRRrRav~Rg~~~LD~Ld~Lk~a 87 (138)
T PRK12787 53 ALLALQGV---EDPTERRRRSVRRGETALDVLDELKIG 87 (138)
T ss_pred HHHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666 344455889999999999999999964
No 85
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=49.65 E-value=46 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|... .|+++....+.+.|+....+.. ...-|++|++|-++.
T Consensus 16 tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~~-~~~~L~~gD~V~ii~ 60 (65)
T cd00565 16 TLAELLEE----LGLDPRGVAVALNGEIVPRSEW-ASTPLQDGDRIEIVT 60 (65)
T ss_pred CHHHHHHH----cCCCCCcEEEEECCEEcCHHHc-CceecCCCCEEEEEE
Confidence 55555544 5788888899999988754432 223489999998874
No 86
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=49.47 E-value=45 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=36.9
Q ss_pred CcHHHHHHHHH----HHhCCCC------CCceEEecC-----------------eec---CCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAIS----EKTGLDP------QEQKVLFRG-----------------KEK---EDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~----e~tGipp------~~QKLifkG-----------------K~L---~d~~~L~~~GvkdgSki~Lv 50 (214)
+|+++|++.+. ...|++| +..||+++- -.| +++.+|.+|||.++..|-+.
T Consensus 27 ~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nETEiSfF 106 (122)
T PF10209_consen 27 TTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENETEISFF 106 (122)
T ss_pred CcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccceeeee
Confidence 36667666554 4577776 556776642 234 56778999999999999887
Q ss_pred cccc
Q 028093 51 EELT 54 (214)
Q Consensus 51 ~~p~ 54 (214)
....
T Consensus 107 ~~~d 110 (122)
T PF10209_consen 107 NMED 110 (122)
T ss_pred CHHH
Confidence 6433
No 87
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=49.06 E-value=26 Score=25.57 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.|+.+|.+..+++.|+++ .--+.=.|-+.+|=.. |+||+.|+++
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~-----IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDV-----IRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEE-----EEcCCEEEEC
Confidence 378999999999999963 2222333444555443 5888888874
No 88
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=45.85 E-value=62 Score=22.98 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeec-C--CcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEK-E--DNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L-~--d~~~L~~~GvkdgSki~Lv 50 (214)
.|+++|..-|....+- +....|+ |-.|.+ + .+.+|.++|+. .|.+++.
T Consensus 23 ~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 23 HKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred CCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 3788999888765543 5556665 455677 3 68999999999 5666654
No 89
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=44.62 E-value=36 Score=24.04 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
|+.+||..+.. +.=-+||.|-..+++..| ++|+.|.|+.+
T Consensus 17 tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L-----~e~D~v~~Ikk 56 (57)
T PF14453_consen 17 TLFELRKESKP------DADIVILNGFPTKEDIEL-----KEGDEVFLIKK 56 (57)
T ss_pred CHHHHHHhhCC------CCCEEEEcCcccCCcccc-----CCCCEEEEEeC
Confidence 56667766433 333679999888766555 88999998864
No 90
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=44.53 E-value=37 Score=26.14 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.++.||.+|+.+.|+.-+.-.+..-+..|+++.+|-+-||+-.-.|-+..
T Consensus 14 pl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 14 PLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp BGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEE
T ss_pred cHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEE
Confidence 57889999999999999998888888889999999999999887887754
No 91
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=44.43 E-value=42 Score=26.97 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhh
Q 028093 82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDT 121 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~ 121 (214)
.+..++.++..+++.++.++..+|+.+.+..-.-++|+..
T Consensus 81 ~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f~l~ref~~ 120 (121)
T TIGR02978 81 SPRQALREVKREFRDLERRLRNMERYVTSDTFRLRREFRN 120 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhc
Confidence 3446788899999999999999999999887655666654
No 92
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=44.39 E-value=47 Score=24.74 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHhCCCCCCceEEe-cCeecCCcchhhhcCCCCCCEEEEec
Q 028093 10 ISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 10 l~e~tGipp~~QKLif-kGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+-+..|||..+..+|+ +|+..+-+ |-+++|+.|.+.-
T Consensus 38 ~IEsLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 38 VIESLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred HHHHcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 3456999999987765 77766543 6689999998864
No 93
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.05 E-value=1.1e+02 Score=21.51 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHH
Q 028093 84 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMK 128 (214)
Q Consensus 84 ~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~ 128 (214)
-..|+.++.+...|...|..++.+| +++..|=|+..+
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~env--------k~ll~lYE~Vs~ 49 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENV--------KDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHc
Confidence 3457888889999999999998776 566677776665
No 94
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=43.13 E-value=84 Score=23.64 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE--EecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.++..+++...-+| ---|-+++++++...+ -++..+|++..
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~lm~L~~ 72 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMVLEK 72 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEEEEECC
Confidence 37899999999999998766665 4467778999988764 78888888864
No 95
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=42.75 E-value=95 Score=23.19 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028093 86 AIAGVRAEVDKLSERVASLEVAV 108 (214)
Q Consensus 86 aI~~i~~evd~L~~~V~~~e~~v 108 (214)
.|..+..+||.|..+|..++..+
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444557777777776665443
No 96
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=42.47 E-value=50 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhh
Q 028093 83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDT 121 (214)
Q Consensus 83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~ 121 (214)
+..++.++..++++++.++..+|..+.+..-.-+.|+..
T Consensus 79 ~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~l~ref~~ 117 (118)
T PRK10697 79 SSELLDEVDRELAAGEQRLREMERYVTSDTFTLRSRFRQ 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhc
Confidence 345778888899999999999999999887655666554
No 97
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=42.46 E-value=72 Score=23.75 Aligned_cols=47 Identities=6% Similarity=0.088 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecC--eecC--------CcchhhhcCCCCCCEEEE
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRG--KEKE--------DNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkG--K~L~--------d~~~L~~~GvkdgSki~L 49 (214)
|+.+|..-+. ..|-.|....|++.= |.+. .+.+|.++|+.+...|++
T Consensus 26 tl~~l~~fv~-~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 26 SLRVIHDFLF-SLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred cHHHHHHHHH-hCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 7888998885 456677888888754 5664 367999999997766554
No 98
>PRK06437 hypothetical protein; Provisional
Probab=41.83 E-value=64 Score=22.81 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=28.2
Q ss_pred HHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 12 EKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 12 e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+..|+++...-++..|..+. ..+-|++|++|-++.
T Consensus 28 ~~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 28 KDLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred HHcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 44699999999999999887 455679999998874
No 99
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=39.15 E-value=1.3e+02 Score=21.66 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHhCC-----------CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGL-----------DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi-----------pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+.+|.+.|.+..+- .-....+..+|+..+.+.. .-|++|+.|.++-
T Consensus 25 ~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 25 KTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 4889999999887631 0123456667766544331 5689999999875
No 100
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=38.87 E-value=1e+02 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHhC-CC--CCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG-LD--PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-ip--p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|...|.+..+ +. .....+..+|+...+ ..=|++|+.|.++-
T Consensus 27 ~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 27 TTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred cCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 488999999988864 11 122355666666554 45679999999875
No 101
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=38.68 E-value=50 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG 27 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG 27 (214)
.|+.+|+.+|.++.+++....+|-|+.
T Consensus 21 ~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 21 ISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 479999999999999988888998884
No 102
>PF14425 Imm3: Immunity protein Imm3
Probab=37.99 E-value=71 Score=25.73 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=42.5
Q ss_pred chhhhhHHHHHHHHHHhhcccccchh-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 028093 116 SEELDTSAELLMKELLKLDGIEAEGE-AKVQRKTEVRRVQKFHETLDNLKAI 166 (214)
Q Consensus 116 eke~~~L~E~Lm~~LlkLD~Ie~~Gd-~R~~RK~~VkrVQ~~le~LD~~k~~ 166 (214)
++=+...-+.+++.|-++|..++.++ .--+-+.+..|++++|+.|+.+..-
T Consensus 61 ~~i~~~~~~~i~~~L~~~~~~~~~~eLt~eE~~dL~~R~nkVL~~l~~~~id 112 (117)
T PF14425_consen 61 NKIFVGQKEGITKRLSQFDFEEVKGELTQEEKEDLSQRINKVLDGLEKVEID 112 (117)
T ss_pred chHHhhHHHHHHHHHHhcChHHHHhHhhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45677888999999999999999884 5567788999999999999887654
No 103
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=35.46 E-value=46 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHhhc
Q 028093 118 ELDTSAELLMKELLKLD 134 (214)
Q Consensus 118 e~~~L~E~Lm~~LlkLD 134 (214)
.+.+|.+.+|+|+..|+
T Consensus 113 ~~~~le~~~~~~~~~~~ 129 (131)
T PRK06228 113 ALAKLESGFIRRFMELK 129 (131)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 78899999999999886
No 104
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=34.90 E-value=1.1e+02 Score=23.19 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceE--EecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.++..+++.. -+| ---|-+++++++...+ -++..+|++..
T Consensus 21 ~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~tL--pdnT~lm~L~~ 71 (81)
T cd06537 21 ASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFELL--EDDTCLMVLEQ 71 (81)
T ss_pred cCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHhhC--CCCCEEEEECC
Confidence 3688999999999999733 444 3467778999888764 78888888874
No 105
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=34.82 E-value=1e+02 Score=21.16 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|... .++++...-+.++|.....+. -..+-|++|++|-++-
T Consensus 15 tv~~ll~~----l~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 15 TLAALLES----LGLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVT 59 (64)
T ss_pred cHHHHHHH----cCCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEE
Confidence 45555443 678887788888888774332 2234589999998764
No 106
>PHA03395 p10 fibrous body protein; Provisional
Probab=34.35 E-value=65 Score=24.76 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028093 86 AIAGVRAEVDKLSERVASLEVAV 108 (214)
Q Consensus 86 aI~~i~~evd~L~~~V~~~e~~v 108 (214)
+|..+..+||.|..+|..+..+.
T Consensus 12 dIkavd~KVdalQ~~V~~l~~nl 34 (87)
T PHA03395 12 DIKAVSDKVDALQAAVDDVRANL 34 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcC
Confidence 45555668899998888885443
No 107
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=33.91 E-value=2.3e+02 Score=22.21 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=23.8
Q ss_pred eEEecCeecCCcchhhhc-CCCCCCEEEEec
Q 028093 22 KVLFRGKEKEDNEHLDVS-GMKDKSKVLLLE 51 (214)
Q Consensus 22 KLifkGK~L~d~~~L~~~-GvkdgSki~Lv~ 51 (214)
.|-|.||+|..+.+|+.| |--+.+||++--
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEe
Confidence 488999999988899988 666667777643
No 108
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=33.85 E-value=1e+02 Score=26.12 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCce-EEe-cCeec--CCcchhhhcCCCCCC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQK-VLF-RGKEK--EDNEHLDVSGMKDKS 45 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QK-Lif-kGK~L--~d~~~L~~~GvkdgS 45 (214)
+||.+|+..|.+.+++++..|- |.+ .|+.+ .++..+..+.-.+.+
T Consensus 25 ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 25 TTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 5899999999999999998863 433 35555 677777777655554
No 109
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=31.70 E-value=59 Score=22.94 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG 27 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG 27 (214)
.|+.+|+..|++..|+++...+|-|..
T Consensus 22 ~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 22 VSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 368899999999999998899999975
No 110
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=30.90 E-value=1.6e+02 Score=22.15 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHhCCCCCCceEE--ecCeec---CCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L---~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|...+.. .|.+++..+|+ |==|.+ +.+.+|.++|+.+..+|++=+
T Consensus 27 ~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 27 KLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred cHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 57778777777 58888888886 444555 446899999999998888743
No 111
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=30.54 E-value=1.4e+02 Score=22.60 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHhCCCCCC--ceE-E-ecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQE--QKV-L-FRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~--QKL-i-fkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.+++.+++... -+| + --|-+.+|+++...+ -++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~l~~L~~ 74 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL--PPNTKFVLLAE 74 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC--CCCcEEEEECC
Confidence 37899999999999999443 455 3 467778999998774 67777777763
No 112
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.13 E-value=2.7e+02 Score=24.21 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhccc
Q 028093 87 IAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGI 136 (214)
Q Consensus 87 I~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~I 136 (214)
...+...|+.|..++..++..+..........+..+...|.+.|-.|-+.
T Consensus 87 ~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~ 136 (247)
T PF06705_consen 87 QEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEA 136 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888877765555666666666666666666543
No 113
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.77 E-value=86 Score=24.95 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=16.7
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 028093 133 LDGIEAEGEAKVQRKTEVRRVQKFHETLDN 162 (214)
Q Consensus 133 LD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~ 162 (214)
||+++++.+++..+-.++..|-.+-.+||.
T Consensus 45 l~a~e~~~d~~EEKaRlItQVLELQnTLdD 74 (120)
T KOG3650|consen 45 LDAVEAENDVEEEKARLITQVLELQNTLDD 74 (120)
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 788888876665554444444333333333
No 114
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=29.46 E-value=64 Score=24.24 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecC
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRG 27 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkG 27 (214)
++.+|..+|+++..++++.-+|-|+-
T Consensus 18 ~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 18 DVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred CHHHHHHHHHHHhcCChhhcEEEecC
Confidence 56899999999999999999999983
No 115
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.84 E-value=2.3e+02 Score=20.79 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccc
Q 028093 103 SLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIE 137 (214)
Q Consensus 103 ~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie 137 (214)
.++..+.+-..|+..||....++|.+.-.+|+++|
T Consensus 36 ~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LE 70 (79)
T PF04380_consen 36 RLQSALSKLDLVTREEFDAQKAVLARTREKLEALE 70 (79)
T ss_pred HHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778888888888888888877777764
No 116
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=28.83 E-value=41 Score=32.48 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=23.4
Q ss_pred cCeecCCcchhhhcCCCCCCEEEEec
Q 028093 26 RGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 26 kGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|..++.+.+|++.||.||+.++|.-
T Consensus 54 gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 54 GGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred CCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 46678999999999999999999985
No 117
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=27.98 E-value=1.7e+02 Score=22.08 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHhCCCCC-CceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~-~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+.++..+++.. ..-|---|-+.+|+++...+ -++..+|+++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL--p~nt~l~vL~~ 71 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL--ADNTVFMVLGK 71 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC--CCCcEEEEECC
Confidence 3789999999999999632 22333567778999988774 67777777763
No 118
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=26.93 E-value=1.9e+02 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=21.2
Q ss_pred hCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 14 TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 14 tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++..-.+..+|..... ..-+++|++|-++.
T Consensus 33 l~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 33 VGFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred cCCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 3777766666677766632 34467888777763
No 119
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=26.41 E-value=89 Score=23.05 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 028093 124 ELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFH 157 (214)
Q Consensus 124 E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~l 157 (214)
+.|..+|.+||.++.+|......+.-.+.++..+
T Consensus 40 ~~l~~ei~~L~~~e~~~~l~~~~k~~l~~Le~~l 73 (78)
T PF09429_consen 40 DRLQEEIDKLEEMEFNGKLSKVEKEKLKKLEKDL 73 (78)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3455666666666666644333333334444333
No 120
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=25.61 E-value=1.1e+02 Score=21.30 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG 27 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG 27 (214)
.|+.+|+.+|.++.+++....+|-|+.
T Consensus 21 ~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 21 ISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 478999999999999987666666664
No 121
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=24.82 E-value=2.7e+02 Score=19.97 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHhCC-----CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGL-----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi-----pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|+..|.+...- .....++.-+| .+... ..=|++|+.|.++-
T Consensus 26 ~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~-~~~~~----~~~l~dgDeVai~P 76 (81)
T PRK11130 26 PTVEALRQHLAQKGDRWALALEDGKLLAAVNQ-TLVSF----DHPLTDGDEVAFFP 76 (81)
T ss_pred CCHHHHHHHHHHhCccHHhhhcCCCEEEEECC-EEcCC----CCCCCCCCEEEEeC
Confidence 4899999999887521 11122222233 22111 23489999998875
No 122
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=24.71 E-value=98 Score=21.30 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHhCC--CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGi--pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+++|...|....+- ....-.+..+|+...+ . -...-|++|++|.++-
T Consensus 22 ~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 22 STVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILP 72 (77)
T ss_dssp SBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEE
T ss_pred CcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEEC
Confidence 4788888888776531 1256678888888776 2 4455679999999874
No 123
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.38 E-value=1.3e+02 Score=18.67 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=18.8
Q ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 028093 127 MKELLKLDGIEAEGEAKVQRKTEVRRVQKFH 157 (214)
Q Consensus 127 m~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~l 157 (214)
+++.++-=++.+.|. +..+|.|++.++
T Consensus 9 Lk~~l~~~gL~~~G~----K~~Li~Rl~~~l 35 (35)
T PF02037_consen 9 LKEELKERGLSTSGK----KAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHTTS-STSS----HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCC----HHHHHHHHHHhC
Confidence 466666667777775 778888888764
No 124
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=24.24 E-value=1.2e+02 Score=31.48 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeec--CCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEK--EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L--~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
|+..++..|...||||.+.|-|+|.|... .|.....--| -.+-|+++.+
T Consensus 336 tl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~~ 386 (732)
T KOG4250|consen 336 TLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVSD 386 (732)
T ss_pred hHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCC--CCCceEEEec
Confidence 67889999999999999999999998763 5544443444 2344555543
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=24.06 E-value=1.9e+02 Score=20.82 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeecC---CcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEKE---DNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L~---d~~~L~~~GvkdgSki~L 49 (214)
.|+.+|..-+....+-+ ....|+ |--|.+. .+.+|.++|+-+...|+|
T Consensus 25 ~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 25 EQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred ChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 37889999988665433 445664 5667773 268999999999888876
No 126
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=23.19 E-value=2.3e+02 Score=19.40 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|... .++++....+-++|...... .-...-+++|++|-++.
T Consensus 16 tl~~Ll~~----l~~~~~~vavavN~~iv~~~-~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 16 TLALLLAE----LDYEGNWLATAVNGELVHKE-ARAQFVLHEGDRIEILS 60 (65)
T ss_pred cHHHHHHH----cCCCCCeEEEEECCEEcCHH-HcCccccCCCCEEEEEE
Confidence 45555544 47777666677777776532 23345589999988764
No 127
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=22.95 E-value=48 Score=23.74 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=11.7
Q ss_pred cchhhhcCCCCCCEEEE
Q 028093 33 NEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 33 ~~~L~~~GvkdgSki~L 49 (214)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 55688999999999976
No 128
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=22.95 E-value=2.1e+02 Score=19.38 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=24.9
Q ss_pred HhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 13 KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 13 ~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
..|+++..--+.+.|....-.... ..=|++|++|-++.
T Consensus 24 ~l~~~~~~vav~vNg~iv~r~~~~-~~~l~~gD~vei~~ 61 (66)
T PRK05659 24 REGLAGRRVAVEVNGEIVPRSQHA-STALREGDVVEIVH 61 (66)
T ss_pred hcCCCCCeEEEEECCeEeCHHHcC-cccCCCCCEEEEEE
Confidence 468888888888888666433322 22368888887753
No 129
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.60 E-value=2.6e+02 Score=19.01 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028093 82 KALQAIAGVRAEVDKLSERVASLEVAV 108 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~~~e~~v 108 (214)
++..++.....+++.+..++.++|..+
T Consensus 20 ~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 20 KVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444566666678999999999988653
No 130
>PLN03217 transcription factor ATBS1; Provisional
Probab=22.45 E-value=1.7e+02 Score=22.62 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028093 80 MRKALQAIAGVRAEVDKLSERVASLEVA 107 (214)
Q Consensus 80 ~~~a~~aI~~i~~evd~L~~~V~~~e~~ 107 (214)
...+|..|-....|||.|.+.+..+...
T Consensus 51 LqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 51 LQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888988889999999999999765
No 131
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.29 E-value=2.7e+02 Score=20.41 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHhCCCCCCceEE--ecCeec---CCcchhhhcCCCCCCEEEE
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L---~d~~~L~~~GvkdgSki~L 49 (214)
|+++|..-+.. .|.++...+|+ |==|.+ +.+.+|.++|+.....|++
T Consensus 26 ~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 26 PLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred cHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 67888888865 48888888885 555665 3467999999998877776
No 132
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=21.87 E-value=63 Score=23.19 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcchhhhcCCCCCCEEEEe
Q 028093 32 DNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 32 d~~~L~~~GvkdgSki~Lv 50 (214)
=.+.|...|+++|++|.+-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 3567899999999999764
No 133
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=21.66 E-value=2.1e+02 Score=19.86 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=28.0
Q ss_pred HhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 13 KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 13 ~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
..|+++...-+.+.|..+.....= .+ +++|++|-++.
T Consensus 24 ~l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~ 60 (65)
T PRK05863 24 SLGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVT 60 (65)
T ss_pred HcCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEe
Confidence 379999999999999976433332 35 89999998764
No 134
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=21.52 E-value=4e+02 Score=22.52 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhccccc
Q 028093 93 EVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEA 138 (214)
Q Consensus 93 evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~ 138 (214)
.++-|..++..+|..+.+.......+-..+++.|...--.|.++-.
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s 51 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAAS 51 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHc
Confidence 5677888888888887543222222334567777777666666533
No 135
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.91 E-value=1.9e+02 Score=19.72 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028093 88 AGVRAEVDKLSERVASLEVAVN 109 (214)
Q Consensus 88 ~~i~~evd~L~~~V~~~e~~v~ 109 (214)
+..+.+|..|..+|..|+.++.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777766554
Done!