Query 028093
Match_columns 214
No_of_seqs 202 out of 289
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m62_A BAG-family molecular ch 99.9 1.1E-21 3.8E-26 147.6 9.6 75 83-163 9-85 (87)
2 1uk5_A BAG-family molecular ch 99.9 1.7E-21 5.7E-26 152.4 9.6 81 82-168 27-109 (111)
3 1m7k_A Silencer of death domai 99.8 5.4E-21 1.8E-25 146.9 9.4 76 82-163 21-98 (99)
4 3a8y_C BAG family molecular ch 99.8 7.7E-21 2.6E-25 153.9 9.4 82 82-169 31-114 (142)
5 1ugo_A BCL2-associated athanog 99.8 7.6E-21 2.6E-25 146.1 8.1 76 83-164 16-93 (99)
6 1i6z_A BAG-family molecular ch 99.7 1.8E-17 6.2E-22 133.3 6.6 111 43-168 1-120 (135)
7 1hx1_B BAG-1, BAG-family molec 99.6 3.7E-15 1.3E-19 116.6 9.4 96 71-169 7-111 (114)
8 1t7s_A BAG-1 cochaperone; stru 99.6 4.5E-15 1.5E-19 119.4 8.8 110 45-169 1-126 (137)
9 1wgg_A Ubiquitin carboxyl-term 99.5 6.6E-15 2.2E-19 110.8 6.8 54 1-55 28-81 (96)
10 1wju_A NEDD8 ultimate buster-1 99.5 7.3E-15 2.5E-19 112.8 6.7 56 1-56 40-95 (100)
11 2bwf_A Ubiquitin-like protein 99.5 1.2E-14 4.1E-19 102.5 6.5 53 1-53 24-76 (77)
12 2kk8_A Uncharacterized protein 99.5 1.2E-14 4.1E-19 106.8 5.6 53 1-53 31-84 (84)
13 1wxv_A BAG-family molecular ch 99.5 1.9E-14 6.3E-19 106.2 6.6 55 1-55 32-87 (92)
14 2kd0_A LRR repeats and ubiquit 99.5 1.9E-14 6.6E-19 105.7 6.6 53 1-53 32-84 (85)
15 3phx_B Ubiquitin-like protein 99.5 2.1E-14 7.2E-19 102.5 6.3 52 1-52 25-76 (79)
16 1v5t_A 8430435I17RIK protein; 99.5 2.2E-14 7.4E-19 106.3 6.6 55 1-55 28-85 (90)
17 2lxa_A Ubiquitin-like protein 99.5 1.2E-14 4.1E-19 108.4 5.1 56 1-56 24-81 (87)
18 2faz_A Ubiquitin-like containi 99.5 4.5E-14 1.5E-18 100.4 6.3 53 1-53 25-77 (78)
19 2dzi_A Ubiquitin-like protein 99.5 4.4E-14 1.5E-18 100.5 6.2 53 1-53 28-80 (81)
20 3v6c_B Ubiquitin; structural g 99.5 5.9E-14 2E-18 103.3 6.4 52 1-52 38-89 (91)
21 2wyq_A HHR23A, UV excision rep 99.5 6.3E-14 2.2E-18 100.9 6.4 53 1-53 26-81 (85)
22 3plu_A Ubiquitin-like modifier 99.5 5.7E-14 1.9E-18 106.8 6.0 50 1-50 42-91 (93)
23 1v86_A DNA segment, CHR 7, way 99.5 3.9E-14 1.4E-18 106.1 4.9 54 1-55 37-90 (95)
24 4eew_A Large proline-rich prot 99.5 7E-14 2.4E-18 101.8 5.8 50 1-51 38-87 (88)
25 1ndd_A NEDD8, protein (ubiquit 99.5 1E-13 3.5E-18 96.9 6.4 52 1-52 21-72 (76)
26 3m62_B UV excision repair prot 99.5 6.7E-14 2.3E-18 106.8 5.8 53 1-53 22-74 (106)
27 4fbj_B NEDD8; effector-HOST ta 99.5 8.5E-14 2.9E-18 102.4 6.0 52 1-52 21-72 (88)
28 3dbh_I NEDD8; cell cycle, acti 99.4 8.7E-14 3E-18 100.6 6.0 52 1-52 33-84 (88)
29 4b6w_A Tubulin-specific chaper 99.4 5.4E-14 1.8E-18 104.4 4.9 52 1-52 25-83 (86)
30 4a20_A Ubiquitin-like protein 99.4 6.6E-14 2.3E-18 106.5 5.4 53 1-53 42-96 (98)
31 3m63_B Ubiquitin domain-contai 99.4 9.5E-14 3.3E-18 105.3 6.0 52 1-52 48-99 (101)
32 2kan_A Uncharacterized protein 99.4 1.1E-13 3.8E-18 103.6 6.1 53 1-53 35-88 (94)
33 2hj8_A Interferon-induced 17 k 99.4 8.6E-14 2.9E-18 102.2 5.3 53 1-53 25-77 (88)
34 3a9j_A Ubiquitin; protein comp 99.4 1.7E-13 5.8E-18 95.8 6.5 52 1-52 21-72 (76)
35 1uel_A HHR23B, UV excision rep 99.4 2.3E-13 7.8E-18 101.4 7.5 53 1-53 21-76 (95)
36 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.6E-13 5.3E-18 103.9 6.6 55 1-55 45-99 (101)
37 4dwf_A HLA-B-associated transc 99.4 1.4E-13 4.8E-18 100.6 6.2 53 1-54 26-78 (90)
38 1wgd_A Homocysteine-responsive 99.4 1.4E-13 5E-18 101.8 6.2 53 1-53 30-86 (93)
39 3n3k_B Ubiquitin; hydrolase, p 99.4 1.6E-13 5.4E-18 98.4 6.0 52 1-52 24-75 (85)
40 1wy8_A NP95-like ring finger p 99.4 2.4E-13 8.1E-18 99.0 6.7 53 1-53 30-82 (89)
41 3mtn_B UBA80, ubcep1, ubiquiti 99.4 2.3E-13 7.9E-18 97.4 6.3 52 1-52 24-75 (85)
42 1wh3_A 59 kDa 2'-5'-oligoadeny 99.4 2.3E-13 7.9E-18 98.5 6.4 53 1-53 28-80 (87)
43 1sif_A Ubiquitin; hydrophobic 99.4 2.3E-13 8E-18 100.0 6.2 52 1-52 30-81 (88)
44 1x1m_A Ubiquitin-like protein 99.4 3E-13 1E-17 103.1 7.0 54 1-54 45-101 (107)
45 4hcn_B Polyubiquitin, ubiquiti 99.4 2.2E-13 7.5E-18 102.0 6.0 52 1-52 43-94 (98)
46 1wx8_A Riken cDNA 4931431F19; 99.4 1.8E-13 6E-18 101.5 5.2 53 1-53 37-89 (96)
47 1wx7_A Ubiquilin 3; ubiquitin- 99.4 5.6E-13 1.9E-17 101.1 7.9 53 1-53 37-89 (106)
48 3k9o_B Ubiquitin, UBB+1; E2-25 99.4 3.1E-13 1.1E-17 99.7 6.3 52 1-52 22-73 (96)
49 1yqb_A Ubiquilin 3; structural 99.4 3E-13 1E-17 102.3 6.3 53 1-53 42-94 (100)
50 1uh6_A Ubiquitin-like 5; beta- 99.4 2.1E-13 7.3E-18 104.6 5.5 50 1-50 49-98 (100)
51 1ttn_A DC-UBP, dendritic cell- 99.4 3.2E-13 1.1E-17 102.7 6.1 53 1-53 44-96 (106)
52 2l7r_A Ubiquitin-like protein 99.4 3.3E-13 1.1E-17 100.4 5.8 52 1-52 38-89 (93)
53 2daf_A FLJ35834 protein; hypot 99.4 3.5E-13 1.2E-17 106.4 6.0 55 1-55 37-91 (118)
54 2uyz_B Small ubiquitin-related 99.4 3.2E-13 1.1E-17 96.3 5.1 52 1-52 24-75 (79)
55 1v5o_A 1700011N24RIK protein; 99.4 3.7E-13 1.3E-17 101.7 5.4 53 1-53 32-85 (102)
56 1yx5_B Ubiquitin; proteasome, 99.4 7.1E-13 2.4E-17 98.7 6.5 53 1-53 21-73 (98)
57 1we6_A Splicing factor, putati 99.4 8.2E-13 2.8E-17 101.1 6.2 52 1-52 52-103 (111)
58 3b1l_X E3 ubiquitin-protein li 99.0 6.6E-14 2.3E-18 98.8 0.0 52 1-52 21-72 (76)
59 1j8c_A Ubiquitin-like protein 99.4 8.8E-13 3E-17 103.8 6.4 53 1-53 52-104 (125)
60 4ajy_B Transcription elongatio 99.3 6.8E-13 2.3E-17 104.7 5.3 52 1-52 22-80 (118)
61 2kjr_A CG11242; UBL, ubiquitin 99.3 1.2E-12 4E-17 98.9 6.4 51 1-51 38-94 (95)
62 2kj6_A Tubulin folding cofacto 99.3 1E-12 3.5E-17 99.8 6.0 52 1-52 37-95 (97)
63 3vdz_A Ubiquitin-40S ribosomal 99.3 1E-12 3.6E-17 100.9 6.0 52 1-52 56-107 (111)
64 2kdb_A Homocysteine-responsive 99.3 7.8E-13 2.7E-17 100.7 5.1 50 1-50 46-99 (99)
65 2kdi_A Ubiquitin, vacuolar pro 99.3 1.3E-12 4.3E-17 101.1 6.2 53 1-53 30-82 (114)
66 1wyw_B Ubiquitin-like protein 99.3 1E-12 3.6E-17 98.4 5.5 52 1-52 42-93 (97)
67 2fnj_B Transcription elongatio 99.3 8.9E-13 3.1E-17 104.0 5.3 52 1-52 22-80 (118)
68 1we7_A SF3A1 protein; structur 99.3 1.3E-12 4.5E-17 100.6 5.9 52 1-52 56-107 (115)
69 2ojr_A Ubiquitin; lanthide-bin 99.3 2.6E-12 8.9E-17 98.4 6.8 52 1-52 56-107 (111)
70 4dbg_A Ranbp-type and C3HC4-ty 99.3 2E-12 6.8E-17 100.1 6.1 54 1-54 47-101 (105)
71 1v6e_A Cytoskeleton-associated 99.3 2.8E-12 9.5E-17 95.7 5.7 52 1-52 29-87 (95)
72 3rt3_B Ubiquitin-like protein 99.3 3.7E-12 1.3E-16 101.8 6.3 52 1-52 102-153 (159)
73 3l0w_B Monoubiquitinated proli 99.3 4.7E-12 1.6E-16 104.2 7.0 52 1-52 21-72 (169)
74 3shq_A UBLCP1; phosphatase, hy 99.3 2.7E-12 9.1E-17 115.6 4.8 55 1-55 25-82 (320)
75 3b08_A Polyubiquitin-C, ubiqui 99.2 7.9E-12 2.7E-16 97.9 6.5 53 1-53 21-73 (152)
76 3b08_A Polyubiquitin-C, ubiqui 99.2 8.8E-12 3E-16 97.6 6.5 52 1-52 97-148 (152)
77 2dzm_A FAS-associated factor 1 99.2 6.3E-12 2.2E-16 96.1 4.8 53 1-53 29-82 (100)
78 1wgh_A Ubiquitin-like 3, HCG-1 99.2 1.7E-11 6E-16 96.0 7.4 59 1-59 37-105 (116)
79 3u30_A Ubiquitin, linear DI-ub 99.2 1.1E-11 3.8E-16 100.7 6.3 52 1-52 41-92 (172)
80 3u5e_m 60S ribosomal protein L 99.2 1E-12 3.5E-17 103.1 0.0 52 1-52 21-72 (128)
81 3rt3_B Ubiquitin-like protein 99.2 1.2E-11 4.2E-16 98.7 6.2 52 1-52 23-76 (159)
82 1wia_A Hypothetical ubiquitin- 99.2 1.6E-11 5.6E-16 90.8 6.0 50 1-53 28-78 (95)
83 3q3f_A Ribonuclease/ubiquitin 99.2 1.4E-11 4.7E-16 103.9 6.0 52 1-52 126-177 (189)
84 1se9_A Ubiquitin family; ubiqu 99.2 1.6E-11 5.3E-16 97.8 5.6 55 1-55 38-105 (126)
85 1t0y_A Tubulin folding cofacto 99.2 2.2E-11 7.5E-16 95.1 6.0 52 1-52 28-86 (122)
86 1v2y_A 3300001G02RIK protein; 99.2 6.4E-12 2.2E-16 96.9 2.9 52 1-52 28-95 (105)
87 2gow_A HCG-1 protein, ubiquiti 99.1 2.6E-11 9E-16 96.1 5.0 57 1-57 38-104 (125)
88 2dzj_A Synaptic glycoprotein S 99.1 2.7E-11 9.3E-16 89.9 4.3 49 1-49 34-85 (88)
89 3u5c_f 40S ribosomal protein S 99.1 4.5E-12 1.5E-16 103.3 0.0 52 1-52 21-72 (152)
90 1wf9_A NPL4 family protein; be 99.1 6.7E-11 2.3E-15 90.3 5.4 55 1-55 28-97 (107)
91 2kzr_A Ubiquitin thioesterase 99.1 1.8E-10 6E-15 84.3 5.8 53 1-53 21-78 (86)
92 1oqy_A HHR23A, UV excision rep 99.0 2.3E-10 8E-15 104.9 5.1 50 1-50 28-80 (368)
93 1wjn_A Tubulin-folding protein 99.0 7E-10 2.4E-14 82.8 6.2 52 1-52 33-92 (97)
94 2xzm_9 RPS31E; ribosome, trans 98.7 1.3E-09 4.4E-14 92.1 0.0 47 1-52 21-67 (189)
95 1wm3_A Ubiquitin-like protein 98.7 2.4E-08 8.4E-13 70.9 5.9 50 1-50 22-71 (72)
96 2io1_B Small ubiquitin-related 98.7 1.9E-08 6.5E-13 75.6 5.6 52 1-52 28-79 (94)
97 3a4r_A Nfatc2-interacting prot 98.7 3.6E-08 1.2E-12 71.5 6.5 51 1-51 29-79 (79)
98 2io0_B Small ubiquitin-related 98.5 9.8E-08 3.4E-12 71.4 5.9 52 1-52 26-77 (91)
99 2d07_B Ubiquitin-like protein 98.5 1.2E-07 4.2E-12 70.8 5.6 52 1-52 38-89 (93)
100 1wz0_A Ubiquitin-like protein 98.5 1.6E-07 5.6E-12 71.9 5.4 52 1-52 45-96 (104)
101 2d9d_A BAG family molecular ch 98.4 1.2E-06 4.1E-11 65.2 8.5 72 84-163 9-82 (89)
102 2k8h_A Small ubiquitin protein 98.4 2.1E-07 7.3E-12 72.1 4.5 52 1-52 47-98 (110)
103 2eke_C Ubiquitin-like protein 98.3 4.7E-07 1.6E-11 69.8 5.2 52 1-52 51-102 (106)
104 4efo_A Serine/threonine-protei 98.0 1.1E-05 3.7E-10 61.2 5.7 52 1-52 34-88 (94)
105 3kyd_D Small ubiquitin-related 97.9 1.8E-05 6.2E-10 61.9 6.3 51 1-51 61-111 (115)
106 3pge_A SUMO-modified prolifera 97.8 1.7E-05 5.9E-10 67.3 5.2 51 1-51 49-99 (200)
107 2pjh_A Protein NPL4, nuclear p 97.6 6.8E-05 2.3E-09 54.4 4.2 50 1-50 24-78 (80)
108 3tix_A Ubiquitin-like protein 97.5 7.2E-05 2.5E-09 63.8 4.9 52 1-52 77-128 (207)
109 3goe_A DNA repair protein RAD6 97.1 0.0014 4.9E-08 48.4 7.0 51 1-51 30-81 (82)
110 3v7o_A Minor nucleoprotein VP3 97.1 7.1E-05 2.4E-09 64.5 0.0 51 2-52 42-92 (227)
111 2jxx_A Nfatc2-interacting prot 96.9 0.0018 6.2E-08 48.9 6.1 51 1-51 47-97 (97)
112 3uf8_A Ubiquitin-like protein 96.4 0.0035 1.2E-07 52.6 5.3 52 1-52 41-92 (209)
113 3ix6_A TS, tsase, thymidylate 96.2 0.00083 2.8E-08 61.6 0.0 51 2-52 42-92 (360)
114 4da1_A Protein phosphatase 1K, 95.9 0.0013 4.3E-08 59.6 0.0 51 2-52 51-101 (389)
115 2l76_A Nfatc2-interacting prot 95.7 0.019 6.5E-07 43.4 5.7 50 3-52 43-92 (95)
116 2bps_A YUKD protein; ubiquitin 95.2 0.018 6.2E-07 42.2 3.9 49 1-49 27-80 (81)
117 2al3_A TUG long isoform; TUG U 95.1 0.049 1.7E-06 40.8 6.2 55 1-55 30-84 (90)
118 2kc2_A Talin-1, F1; FERM, adhe 95.0 0.026 9E-07 44.7 4.7 51 1-51 32-121 (128)
119 3qx1_A FAS-associated factor 1 91.7 0.3 1E-05 34.8 5.3 50 1-51 28-82 (84)
120 4a3p_A Ubiquitin carboxyl-term 89.5 0.59 2E-05 39.1 5.9 51 1-51 150-207 (217)
121 3jyu_A Ubiquitin carboxyl-term 89.0 0.73 2.5E-05 38.9 6.1 51 1-51 162-219 (231)
122 2kvr_A Ubiquitin carboxyl-term 85.7 0.44 1.5E-05 37.3 2.6 26 1-26 66-91 (130)
123 3onh_A Ubiquitin-activating en 80.8 3.6 0.00012 32.5 6.0 51 1-52 20-79 (127)
124 4eut_A Serine/threonine-protei 75.5 5.1 0.00018 34.8 6.2 52 1-52 332-386 (396)
125 1wj4_A KIAA0794 protein; UBX d 73.6 3.5 0.00012 31.7 4.1 50 1-51 64-118 (124)
126 3ivf_A Talin-1; FERM domain, c 69.7 6.6 0.00022 34.6 5.5 50 1-50 23-82 (371)
127 2dzk_A UBX domain-containing p 68.4 8.8 0.0003 28.6 5.2 52 1-52 34-90 (109)
128 4e61_A Protein BIM1; EB1-like 65.9 15 0.00051 28.0 6.1 70 90-159 16-98 (106)
129 2cr5_A Reproduction 8; UBX dom 62.0 22 0.00075 26.3 6.3 49 2-51 45-97 (109)
130 2ylm_A Ubiquitin carboxyl-term 61.7 3.9 0.00013 38.6 2.5 24 1-24 46-69 (530)
131 2eel_A Cell death activator CI 60.8 18 0.00061 26.8 5.5 49 1-51 28-78 (91)
132 2juo_A GA-binding protein alph 59.6 17 0.00056 27.0 5.1 50 2-51 14-63 (89)
133 1vcs_A Vesicle transport throu 57.8 18 0.00061 26.8 5.1 43 116-163 11-53 (102)
134 1s3s_G P47 protein; AAA ATPase 57.2 12 0.00043 28.6 4.3 46 1-46 73-122 (127)
135 3onj_A T-snare VTI1; helix, HA 56.7 20 0.00067 26.3 5.2 43 116-163 7-49 (97)
136 1oey_A P67-PHOX, neutrophil cy 52.8 9.8 0.00033 27.7 2.9 27 2-28 25-51 (83)
137 1ryj_A Unknown; beta/alpha pro 52.0 30 0.001 23.3 5.2 42 1-51 24-65 (70)
138 1f2r_I Inhibitor of caspase-ac 46.4 31 0.0011 26.0 4.8 50 1-52 37-90 (100)
139 2qyw_A Vesicle transport throu 46.3 44 0.0015 24.6 5.7 19 146-164 80-98 (102)
140 3qa8_A MGC80376 protein; kinas 45.9 15 0.00051 35.7 3.8 39 1-39 332-371 (676)
141 2r2o_A Plexin-B1; effector dom 44.4 44 0.0015 26.5 5.7 52 2-53 52-129 (138)
142 1fm0_D Molybdopterin convertin 41.3 32 0.0011 23.2 4.0 46 1-51 26-76 (81)
143 3rpf_C Molybdopterin convertin 39.9 68 0.0023 21.6 5.5 47 1-51 21-69 (74)
144 1ip9_A BEM1 protein; ubiquitin 39.5 28 0.00096 25.5 3.5 46 2-50 33-83 (85)
145 1tyg_B YJBS; alpha beta barrel 39.1 58 0.002 23.4 5.2 44 2-50 38-81 (87)
146 1ibx_B Chimera of IGG binding 36.8 37 0.0013 27.2 4.2 50 1-52 82-135 (145)
147 2cu3_A Unknown function protei 35.2 55 0.0019 21.5 4.3 46 1-51 14-59 (64)
148 3bj4_A Potassium voltage-gated 34.1 66 0.0023 21.2 4.4 29 91-130 16-44 (49)
149 3dwg_C 9.5 kDa culture filtrat 33.8 1.2E+02 0.0039 21.1 6.1 50 1-51 26-88 (93)
150 1rws_A Hypothetical protein PF 33.7 25 0.00084 24.2 2.4 42 1-51 31-72 (77)
151 1f0z_A THis protein; ubiquitin 33.3 62 0.0021 21.3 4.3 46 1-51 16-61 (66)
152 3zsu_A TLL2057 protein, cyanoq 29.3 2E+02 0.0069 22.4 8.8 81 78-158 21-124 (130)
153 2kl0_A Putative thiamin biosyn 27.8 98 0.0033 21.2 4.7 45 2-51 16-60 (73)
154 4e71_A Plexin-B2, MM1; transme 27.3 29 0.001 26.5 2.0 50 2-51 35-109 (111)
155 2g1e_A Hypothetical protein TA 27.1 1.4E+02 0.0049 20.2 5.6 50 1-51 25-85 (90)
156 1wp7_A Fusion protein; fusion 26.6 1.7E+02 0.0058 21.5 5.9 70 78-160 13-82 (89)
157 3po0_A Small archaeal modifier 26.0 1.6E+02 0.0054 20.1 5.9 46 1-51 28-84 (89)
158 1vjk_A Molybdopterin convertin 25.1 1.8E+02 0.0062 20.4 6.1 46 1-51 37-93 (98)
159 3pw3_A Aminopeptidase C; bleom 24.3 77 0.0026 28.8 4.5 51 3-55 153-203 (383)
160 4e74_A Plexin-A4; RBD, structu 23.5 38 0.0013 26.1 2.0 51 2-52 38-114 (117)
161 1d4b_A CIDE B, human cell deat 23.4 55 0.0019 25.4 2.9 48 2-52 55-104 (122)
162 2l32_A Small archaeal modifier 23.2 96 0.0033 21.3 3.9 36 10-51 26-61 (74)
163 2ylm_A Ubiquitin carboxyl-term 21.8 76 0.0026 29.7 4.1 50 2-52 158-216 (530)
164 2q5w_D Molybdopterin convertin 21.5 1.3E+02 0.0045 19.8 4.4 44 2-51 27-72 (77)
165 3ls0_A SLL1638 protein, PSBQ; 21.5 2.9E+02 0.01 21.5 9.4 81 78-158 23-127 (133)
166 2z5i_A TM, general control pro 20.3 1.8E+02 0.0061 19.0 4.6 39 83-132 10-48 (52)
No 1
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.86 E-value=1.1e-21 Score=147.64 Aligned_cols=75 Identities=29% Similarity=0.399 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093 83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL 160 (214)
Q Consensus 83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L 160 (214)
++++|+.|+.+|++|+++|..|+ +++.|++|.+|+|+||++||+||+|+++| ++|++||.+|++||++|+.|
T Consensus 9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L 82 (87)
T 1m62_A 9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL 82 (87)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999993 56899999999999999999999999999 49999999999999999999
Q ss_pred HHH
Q 028093 161 DNL 163 (214)
Q Consensus 161 D~~ 163 (214)
|..
T Consensus 83 D~k 85 (87)
T 1m62_A 83 EKK 85 (87)
T ss_dssp HHH
T ss_pred Hhc
Confidence 984
No 2
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.85 E-value=1.7e-21 Score=152.40 Aligned_cols=81 Identities=28% Similarity=0.401 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHH
Q 028093 82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET 159 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~ 159 (214)
.++++|+.|..+|++|+++|..| .+++.|++|.+|+|+|||+|||||+|+++| ++|++||.+||+||++|+.
T Consensus 27 p~~~~I~~I~~eV~~L~~qV~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~ 100 (111)
T 1uk5_A 27 PGVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEK 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------CSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 556699999999999999999999999999 4999999999999999999
Q ss_pred HHHHHhhcC
Q 028093 160 LDNLKAINS 168 (214)
Q Consensus 160 LD~~k~~n~ 168 (214)
||.....++
T Consensus 101 LD~k~~~~~ 109 (111)
T 1uk5_A 101 LEQKASGPS 109 (111)
T ss_dssp HHHHHHCCC
T ss_pred HHhcccCCC
Confidence 999765443
No 3
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.84 E-value=5.4e-21 Score=146.92 Aligned_cols=76 Identities=29% Similarity=0.392 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHH
Q 028093 82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET 159 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~ 159 (214)
.++++|..|+.+|++|+++|..|+ +++.+++|.+|+|+||++|||||+|+++| ++|++||.+|++||++|+.
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~------G~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCC------SCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999994 44599999999999999999999999999 4999999999999999999
Q ss_pred HHHH
Q 028093 160 LDNL 163 (214)
Q Consensus 160 LD~~ 163 (214)
||..
T Consensus 95 LD~k 98 (99)
T 1m7k_A 95 LEKK 98 (99)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 9973
No 4
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=99.83 E-value=7.7e-21 Score=153.88 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchh--hHHHHHHHHHHHHHHHHH
Q 028093 82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE--AKVQRKTEVRRVQKFHET 159 (214)
Q Consensus 82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd--~R~~RK~~VkrVQ~~le~ 159 (214)
.++++|..|+.+|++|+++|..| .+++.+++|.+|+|+||++|||||+|+++|+ +|.+||.+|++||++|+.
T Consensus 31 p~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~ 104 (142)
T 3a8y_C 31 PSHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSY 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 6668999999999999999999999999995 999999999999999999
Q ss_pred HHHHHhhcCC
Q 028093 160 LDNLKAINSN 169 (214)
Q Consensus 160 LD~~k~~n~~ 169 (214)
||..+..+..
T Consensus 105 LD~k~~e~~~ 114 (142)
T 3a8y_C 105 LDLKSDEWEY 114 (142)
T ss_dssp HHHHHCBCCC
T ss_pred HHHhhHHHHH
Confidence 9998876654
No 5
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.83 E-value=7.6e-21 Score=146.07 Aligned_cols=76 Identities=16% Similarity=0.382 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093 83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL 160 (214)
Q Consensus 83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L 160 (214)
+.++|+.|+.+|++|+++|..| .++++|++|.+|+|+||++|||||+|+++| ++|++||.+|++||++|+.|
T Consensus 16 pi~kI~~I~~ev~~L~~~V~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L 89 (99)
T 1ugo_A 16 SISRLQEIQREVKAIEPQVVGF------SGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL 89 (99)
T ss_dssp THHHHHHHHHHHHHSHHHHHTC------CCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999999 556689999999999999999999999999 56999999999999999999
Q ss_pred HHHH
Q 028093 161 DNLK 164 (214)
Q Consensus 161 D~~k 164 (214)
|...
T Consensus 90 D~k~ 93 (99)
T 1ugo_A 90 EQNA 93 (99)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9855
No 6
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.69 E-value=1.8e-17 Score=133.25 Aligned_cols=111 Identities=16% Similarity=0.281 Sum_probs=94.2
Q ss_pred CCCEEEEeccccccccCCcccCCCCcchhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC------c
Q 028093 43 DKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVP------S 116 (214)
Q Consensus 43 dgSki~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~------e 116 (214)
+||+|||+|++.+++. ..++++...+++++ ..+..+++.+..++.+|+++|...+.++ +
T Consensus 1 ~G~KvMviGkK~~pee------------e~~lKkL~dveksv---~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~ 65 (135)
T 1i6z_A 1 GSPEFMLIGEKSNPEE------------EVELKKLKDLEVSA---EKIANHLQELNKELSGIQQGFLAKELQAEALCKLD 65 (135)
T ss_dssp CCCCCSSSCCCCCHHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCChHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHH
Confidence 6999999998777654 45566666666554 5556699999999999999999877543 7
Q ss_pred hhhhhHHHHHHHHHHhhcccccch---hhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028093 117 EELDTSAELLMKELLKLDGIEAEG---EAKVQRKTEVRRVQKFHETLDNLKAINS 168 (214)
Q Consensus 117 ke~~~L~E~Lm~~LlkLD~Ie~~G---d~R~~RK~~VkrVQ~~le~LD~~k~~n~ 168 (214)
|++..++|++|+.|++||++.-.+ ++|.+||.+|++||.+|.+||.+.++..
T Consensus 66 Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~ 120 (135)
T 1i6z_A 66 RKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYIC 120 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995433 9999999999999999999999998865
No 7
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=99.59 E-value=3.7e-15 Score=116.56 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=82.5
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------CCCchhhhhHHHHHHHHHHhhccccc---chh
Q 028093 71 HEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGT------KVPSEELDTSAELLMKELLKLDGIEA---EGE 141 (214)
Q Consensus 71 ~~e~~k~~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~------k~~eke~~~L~E~Lm~~LlkLD~Ie~---~Gd 141 (214)
..++++...+++++ ..+..+++.++.++.+|+++|...+ ++-+|++..++|+||+.|++||++.. ..+
T Consensus 7 E~~lK~L~~veksv---~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~ 83 (114)
T 1hx1_B 7 EVELKKLKHLEKSV---EKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKD 83 (114)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHH
Confidence 44567777777666 5555599999999999999999987 45599999999999999999999943 449
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028093 142 AKVQRKTEVRRVQKFHETLDNLKAINSN 169 (214)
Q Consensus 142 ~R~~RK~~VkrVQ~~le~LD~~k~~n~~ 169 (214)
+|.+||.+|++||++|.+||.+.++.+.
T Consensus 84 ~R~kRK~lV~~iQ~~l~~cD~l~~~i~~ 111 (114)
T 1hx1_B 84 SRLKRKGLVKKVQAFLAECDTVEQNICQ 111 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 9999999999999999999999988764
No 8
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=99.58 E-value=4.5e-15 Score=119.39 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=92.9
Q ss_pred CEEEEeccccccccCCcccCCCCcchhhhhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCC------ch
Q 028093 45 SKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLS-ERVASLEVAVNGGTKVP------SE 117 (214)
Q Consensus 45 Ski~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~~a~~aI~~i~~evd~L~-~~V~~~e~~v~~~~k~~------ek 117 (214)
++||++|++.+++. ..+.+....+++++..+ ..+++.+. .++.+++++|...+.++ +|
T Consensus 1 ~KvMvlGkk~~~ee------------d~~lK~L~~~Ek~~~~~---~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldK 65 (137)
T 1t7s_A 1 DKIIVMGGKNALVD------------DAGFKMLMQYEKHNLSN---LQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEK 65 (137)
T ss_dssp CCCEEECSSSEEEC------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCcch------------hHHHHHHHHHHHHHHHH---HHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHH
Confidence 58999999888766 46677777777666555 44999999 99999999999987544 69
Q ss_pred hhhhHHHHHHHHHHhhcccc--c-----c--hhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028093 118 ELDTSAELLMKELLKLDGIE--A-----E--GEAKVQRKTEVRRVQKFHETLDNLKAINSN 169 (214)
Q Consensus 118 e~~~L~E~Lm~~LlkLD~Ie--~-----~--Gd~R~~RK~~VkrVQ~~le~LD~~k~~n~~ 169 (214)
++..++|.+|+.|+.||++. . + -++|.+||.+|++||.+|.+||.+.++...
T Consensus 66 rik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~ 126 (137)
T 1t7s_A 66 KVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQE 126 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999992 1 2 489999999999999999999999988654
No 9
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=6.6e-15 Score=110.83 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||++||.+|++.+|||+++|||||+||.|+|+ +|+.|||++|++||||+++..
T Consensus 28 ~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 28 EPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp SCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 489999999999999999999999999999888 999999999999999998764
No 10
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=7.3e-15 Score=112.81 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=52.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK 56 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s~ 56 (214)
.||++||++|++++|+||++|||||+||.|+|+.+|++|||++||+||+|.-..+.
T Consensus 40 ~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~~ 95 (100)
T 1wju_A 40 ITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS 95 (100)
T ss_dssp SBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 48999999999999999999999999999999999999999999999999865554
No 11
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.53 E-value=1.2e-14 Score=102.55 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|||+.++
T Consensus 24 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 24 STVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999999999999999999999999865
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=1.2e-14 Score=106.79 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCee-cCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~-L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+||++|||+|+|+. |+|+.+|.+|||++||+|+|+..|
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999 999999999999999999999865
No 13
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=1.9e-14 Score=106.25 Aligned_cols=55 Identities=25% Similarity=0.507 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCC-cchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKED-NEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d-~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||++||++|++.+|+||++|||+|+||.|+| +.+|..|||++|++|||+..+..
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNS 87 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCCC
Confidence 48999999999999999999999999999977 66899999999999999997654
No 14
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=1.9e-14 Score=105.65 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+||++|||+|+||.|+|+.+|.+|||++|++|+|+.+|
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 32 CTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999999865
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=102.50 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|++|||++||+|||+..
T Consensus 25 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred ChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 16
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.51 E-value=2.2e-14 Score=106.27 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE---ecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi---fkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||++||.+|++.+||||++|||+ |+||.|+|+.+|+.|||++|++||||+.+..
T Consensus 28 ~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~ 85 (90)
T 1v5t_A 28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES 85 (90)
T ss_dssp SBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred CCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCcc
Confidence 489999999999999999999999 9999999999999999999999999998653
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.2e-14 Score=108.38 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=53.0
Q ss_pred CcHHHHHHHH-HHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEecccccc
Q 028093 1 MMIGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEELTNK 56 (214)
Q Consensus 1 ~Tv~~LK~~l-~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p~s~ 56 (214)
.||++||++| ++.+|+||++|||||+||.|+|+.+|++||| .+|++|+|++.|.-.
T Consensus 24 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~~ 81 (87)
T 2lxa_A 24 DTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNLE 81 (87)
T ss_dssp CBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCCC
T ss_pred CcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCcc
Confidence 4899999999 9999999999999999999999999999999 699999999998754
No 18
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=4.5e-14 Score=100.36 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus 25 ~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 25 TKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999998753
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.4e-14 Score=100.51 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||++|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus 28 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 28 ELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999998753
No 20
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.47 E-value=5.9e-14 Score=103.34 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 38 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999863
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.47 E-value=6.3e-14 Score=100.93 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHH---hCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~---tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||++|++. +|+|+++|||+|+|+.|+|+.+|++|||++|++|||+..+
T Consensus 26 ~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 26 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp SBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 4899999999998 9999999999999999999999999999999999999864
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.46 E-value=5.7e-14 Score=106.76 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.||++||++|++++|+||++|||+|.|++|+|..+|.+|||++|++|+|.
T Consensus 42 DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 42 DSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999984
No 23
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=3.9e-14 Score=106.10 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||.+||++|++.+||||++|||+|+||.|+|. +|..|||++|++|||++.+.+
T Consensus 37 ~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~~ 90 (95)
T 1v86_A 37 STGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTIS 90 (95)
T ss_dssp SBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSCC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEecccc
Confidence 489999999999999999999999999999555 999999999999999997643
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.45 E-value=7e-14 Score=101.83 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|..||| +|++|||+.
T Consensus 38 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 38 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 48999999999999999999999999999999999999999 899999985
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.45 E-value=1e-13 Score=96.92 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 26
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.7e-14 Score=106.75 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|+++|||||+||.|+|+.+|.+|||++|++|+|+..+
T Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 22 NTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp SBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999999999999999999999999863
No 27
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.45 E-value=8.5e-14 Score=102.38 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999965
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.45 E-value=8.7e-14 Score=100.59 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+||+.|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus 33 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 33 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 29
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=5.4e-14 Score=104.42 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec-------CeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR-------GKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk-------GK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||.+|+..+||||++|||||+ |+.++|+.+|..|||++|++|||+..
T Consensus 25 ~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 25 QTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp SBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 58999999999999999999999975 88999999999999999999999974
No 30
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.45 E-value=6.6e-14 Score=106.54 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=50.5
Q ss_pred CcHHHHHHHH-HHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEeccc
Q 028093 1 MMIGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l-~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p 53 (214)
.||++||++| ++.+|+||++|||||+||.|+|+.+|+.||| ++|++|+||.++
T Consensus 42 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 42 DTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp CBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred ChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 4899999999 9999999999999999999999999999999 999999999863
No 31
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=9.5e-14 Score=105.32 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+.+
T Consensus 48 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 48 STVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp SBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4899999999999999999999999999999999999999999999999975
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=1.1e-13 Score=103.57 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+||++|||+|+||.|+|+ .+|..|||++|++|+|+...
T Consensus 35 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 35 ETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 489999999999999999999999999999988 99999999999999999864
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=8.6e-14 Score=102.19 Aligned_cols=53 Identities=28% Similarity=0.336 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+..+
T Consensus 25 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp SBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 48999999999999999999999999999999999999999999999999864
No 34
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.44 E-value=1.7e-13 Score=95.78 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999875
No 35
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.3e-13 Score=101.37 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHH---hCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~---tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++. +|+|+++|||+|+||.|+|+.+|.+|||++|++|+|+..+
T Consensus 21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 21 ETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp SBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 4899999999999 8999999999999999999999999999999999999863
No 36
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=103.90 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+..+.+
T Consensus 45 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 45 SSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 4899999999999999999999999999999999999999999999999986543
No 37
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.43 E-value=1.4e-13 Score=100.61 Aligned_cols=53 Identities=17% Similarity=0.417 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
.||.+||.+|++.+|+|+++|||||+|+.|+|+.+|..||| +|++|||+..+.
T Consensus 26 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 26 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 48999999999999999999999999999999999999999 999999998743
No 38
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.4e-13 Score=101.77 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHh--CCCCCCceEEecCeecCCcchhhhc--CCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKT--GLDPQEQKVLFRGKEKEDNEHLDVS--GMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~t--Gipp~~QKLifkGK~L~d~~~L~~~--GvkdgSki~Lv~~p 53 (214)
.||++||++|++.+ |+|+++|||||+||.|+|+.+|.+| ||++|++|||+...
T Consensus 30 ~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 30 WSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp SCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred CcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 48999999999999 9999999999999999999999999 99999999999753
No 39
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.6e-13 Score=98.42 Aligned_cols=52 Identities=31% Similarity=0.549 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||+++++|+|+..
T Consensus 24 ~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 5899999999999999999999999999999999999999999999999874
No 40
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.4e-13 Score=99.02 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus 30 ~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 30 ATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999999753
No 41
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.3e-13 Score=97.39 Aligned_cols=52 Identities=31% Similarity=0.528 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||+++++|+|+..
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999974
No 42
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.3e-13 Score=98.51 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus 28 ~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 28 SFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred ChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 48999999999999999999999999999999999999999999999999753
No 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=2.3e-13 Score=100.00 Aligned_cols=52 Identities=31% Similarity=0.533 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+||+.|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 30 DTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred ChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999875
No 44
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=3e-13 Score=103.14 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHh--CCCCCC-ceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093 1 MMIGDLKKAISEKT--GLDPQE-QKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54 (214)
Q Consensus 1 ~Tv~~LK~~l~e~t--Gipp~~-QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~ 54 (214)
.||++||++|++.+ |+|+++ |||||+||.|+|+.+|..|||++|++|||+..+.
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSC
T ss_pred CCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCC
Confidence 48999999999999 999999 9999999999999999999999999999998654
No 45
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.2e-13 Score=102.00 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 43 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 43 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.8e-13 Score=101.54 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 37 SNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp CCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999999764
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=5.6e-13 Score=101.06 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||++|++.+|||+++|||+|+|+.|+|+.+|..|||++|++|||+...
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 37 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999999999999999999999999864
No 48
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.40 E-value=3.1e-13 Score=99.68 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus 22 ~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 22 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999975
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=3e-13 Score=102.29 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|+++|||+|+||.|+|+.+|.+|||++|++|+|+...
T Consensus 42 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 42 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999999999999999999999999864
No 50
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=2.1e-13 Score=104.64 Aligned_cols=50 Identities=26% Similarity=0.174 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.||++||++|++++|+||++|||||.||.|+|+.+|.+|||++|++|+|+
T Consensus 49 dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 49 DTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999986
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=3.2e-13 Score=102.73 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|+++|||+|+|+.|+|+.+|..|||++|++|||+...
T Consensus 44 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 44 DTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp SHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999999853
No 52
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=100.39 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 38 ETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 53
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=106.38 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
+||++||+.|++..|+|++.|+|||+||.|+|+++|..|||++|.+|||+.....
T Consensus 37 ~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 37 TILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp SCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred CcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 4899999999999999999999999999999999999999999999999986443
No 54
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.38 E-value=3.2e-13 Score=96.30 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||+++++.+|+|+++|||+|.|+.|+|+.+|.+|||++|++|+|+..
T Consensus 24 ~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=3.7e-13 Score=101.72 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p 53 (214)
+||++||.+|++.+|||+++|||+|+|+.|+|+ .+|..|||++|++|||+...
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 589999999999999999999999999999776 69999999999999999864
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.37 E-value=7.1e-13 Score=98.72 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+...
T Consensus 21 ~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999999763
No 57
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=8.2e-13 Score=101.06 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|||+++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 52 ENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp SBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999975
No 58
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.04 E-value=6.6e-14 Score=98.84 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|||+..
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 21 TSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 4899999999999999999999999999999999999999999999999874
No 59
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=8.8e-13 Score=103.81 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||.+|++.+|||+++|||||+||.|+|+.+|..|||++|++|+|+...
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 52 SSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 48999999999999999999999999999999999999999999999999863
No 60
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.35 E-value=6.8e-13 Score=104.74 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCC-------CCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKD-------KSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gvkd-------gSki~Lv~~ 52 (214)
.||.+||++|++++||||++|||||.||.|+|+.+|++|||++ +++|||+-.
T Consensus 22 dTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 22 STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999 999999854
No 61
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-12 Score=98.91 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec--Ce---ec-CCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR--GK---EK-EDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk--GK---~L-~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||++||++|++.+||||++|||+|+ |+ .| +|+.+|..|||++|++|+|+.
T Consensus 38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 38 LTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp CBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 58999999999999999999999998 45 55 899999999999999999986
No 62
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=1e-12 Score=99.77 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCe---e---c-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGK---E---K-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK---~---L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||.+|+..+||||++|||+|.|+ . | +|+.+|..|||++|++|||+..
T Consensus 37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 5899999999999999999999999984 3 4 8999999999999999999974
No 63
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.34 E-value=1e-12 Score=100.87 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+||++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 64
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.34 E-value=7.8e-13 Score=100.66 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHH-hCCCC-CCceEEecCeecCCcchhhhc--CCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEK-TGLDP-QEQKVLFRGKEKEDNEHLDVS--GMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~-tGipp-~~QKLifkGK~L~d~~~L~~~--GvkdgSki~Lv 50 (214)
.||++||++|++. +|+|| ++|||||+||.|+|+.+|..| ||++|++|||+
T Consensus 46 ~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 46 WTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp SBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4899999999996 67775 999999999999999999999 99999999986
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.3e-12 Score=101.08 Aligned_cols=53 Identities=28% Similarity=0.517 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+...
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 30 DTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 48999999999999999999999999999999999999999999999999763
No 66
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.33 E-value=1e-12 Score=98.38 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.++++++|||+++|||||.|+.|+|+.+|..|||++|++|+|+..
T Consensus 42 ~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 42 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 67
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.33 E-value=8.9e-13 Score=103.96 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCC-------CCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMK-------DKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gvk-------dgSki~Lv~~ 52 (214)
.||++||.+|++++||||++|||||.||.|+|+.+|+.|||+ ++|+|||+-.
T Consensus 22 dTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 22 STVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 489999999999999999999999999999999999999999 7999999875
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.33 E-value=1.3e-12 Score=100.64 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 56 DQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp SBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999864
No 69
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=98.39 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus 56 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999864
No 70
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.31 E-value=2e-12 Score=100.08 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEecccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEELT 54 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p~ 54 (214)
+||++||++|+++.||||++|||||+|+.++|+.+|.+||| ++|++|||+--.+
T Consensus 47 ~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~~ 101 (105)
T 4dbg_A 47 MTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSA 101 (105)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECCC
T ss_pred ChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEec
Confidence 58999999999999999999999999998899999999999 5999999987543
No 71
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=2.8e-12 Score=95.72 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC---ee----cCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG---KE----KEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG---K~----L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|+..+||||++|||+|+| +. ++|+.+|..|||++|++|||+..
T Consensus 29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 589999999999999999999999997 43 48999999999999999999874
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.28 E-value=3.7e-12 Score=101.80 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++||+|||+..
T Consensus 102 ~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 102 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999974
No 73
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.28 E-value=4.7e-12 Score=104.23 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999964
No 74
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=2.7e-12 Score=115.55 Aligned_cols=55 Identities=25% Similarity=0.428 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE---ecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi---fkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||++||++|++.|||||++|||| |+||.|+|+.+|+.|||++|++||||+++..
T Consensus 25 ~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 25 DTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 589999999999999999999999 9999999999999999999999999998765
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.25 E-value=7.9e-12 Score=97.89 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 48999999999999999999999999999999999999999999999999864
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.24 E-value=8.8e-12 Score=97.61 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||++|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus 97 ~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999874
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=6.3e-12 Score=96.10 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEe-cCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLif-kGK~L~d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|+++|||||++|||+| +|+.|+|+.+|+.|||++|++|||+-.+
T Consensus 29 ~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 29 CTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred CcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 4899999999999999999999997 4444999999999999999999998643
No 78
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=1.7e-11 Score=96.04 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHH------HhCC--CCCCceEEecCeecCCcchhhhcCCCCC--CEEEEeccccccccC
Q 028093 1 MMIGDLKKAISE------KTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDK--SKVLLLEELTNKEKK 59 (214)
Q Consensus 1 ~Tv~~LK~~l~e------~tGi--pp~~QKLifkGK~L~d~~~L~~~Gvkdg--Ski~Lv~~p~s~e~r 59 (214)
.||++||++|++ ++|+ |+++|||||.||.|+|+.+|++|||+.+ ++|||+..+...++.
T Consensus 37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~~~~~ 105 (116)
T 1wgh_A 37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPN 105 (116)
T ss_dssp CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSCSSSC
T ss_pred CHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccCCCCCCC
Confidence 489999999999 7786 5999999999999999999999999877 679999876655543
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=100.69 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 41 ~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 41 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 4899999999999999999999999999999999999999999999999965
No 80
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.22 E-value=1e-12 Score=103.11 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+||||++|||+|+|+.|+|+.+|++|||++||+|+|+..
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 4899999999999999999999999999999999999999999999999975
No 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.22 E-value=1.2e-11 Score=98.72 Aligned_cols=52 Identities=29% Similarity=0.460 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE-e-cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL-F-RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi-f-kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+|+||++|||+ | +|+.|+|+.+|.+|||++|++|||+..
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 489999999999999999999999 9 799999999999999999999999987
No 82
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.21 E-value=1.6e-11 Score=90.83 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||.+|++.+ +++|||||+||.|+|+ .+|..|||++|++|||+..+
T Consensus 28 ~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 28 DTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp SBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 48999999999998 8999999999999888 99999999999999999864
No 83
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.20 E-value=1.4e-11 Score=103.87 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+||||++|||||+|+.|+|+.+|++|||++||+|||+..
T Consensus 126 ~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 126 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred CcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 5899999999999999999999999999999999999999999999999975
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.19 E-value=1.6e-11 Score=97.85 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=49.2
Q ss_pred CcHHHHHHHH-----HHHhCCCC--CCceEEecCeecCCcchhhhcCCCCC------CEEEEeccccc
Q 028093 1 MMIGDLKKAI-----SEKTGLDP--QEQKVLFRGKEKEDNEHLDVSGMKDK------SKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l-----~e~tGipp--~~QKLifkGK~L~d~~~L~~~Gvkdg------Ski~Lv~~p~s 55 (214)
.||.+||++| .+.+|+|+ ++|||||.||.|+|+.+|++|+|++| ++|||+-.+..
T Consensus 38 dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g 105 (126)
T 1se9_A 38 TTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPV 105 (126)
T ss_dssp CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCS
T ss_pred CHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCC
Confidence 5899999999 56789997 89999999999999999999999999 68999876544
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.18 E-value=2.2e-11 Score=95.11 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC---e---ec-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG---K---EK-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG---K---~L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|+..+||||++|||+|.| + .| +|+.+|..|||++|++|||+..
T Consensus 28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 489999999999999999999999988 4 34 8999999999999999999974
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=6.4e-12 Score=96.95 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHhCCCC---------------CCceEEecCeec-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDP---------------QEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp---------------~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||++|++++|+|| ++|+|||.||.| +|+.+|.+|||++|++|||+-.
T Consensus 28 ~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEeh
Confidence 589999999999999998 467999999999 5789999999999999999975
No 87
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=96.07 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHH------HhCCC--CCCceEEecCeecCCcchhhhcCCCCCC--EEEEeccccccc
Q 028093 1 MMIGDLKKAISE------KTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKDKS--KVLLLEELTNKE 57 (214)
Q Consensus 1 ~Tv~~LK~~l~e------~tGip--p~~QKLifkGK~L~d~~~L~~~GvkdgS--ki~Lv~~p~s~e 57 (214)
.||++||++|++ ++|+| +++|||||.||.|+|+.+|++|||++|+ +|||+..+...+
T Consensus 38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~~ 104 (125)
T 2gow_A 38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPE 104 (125)
T ss_dssp SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCSS
T ss_pred cHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCCc
Confidence 489999999999 88995 8999999999999999999999999776 789888765443
No 88
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.7e-11 Score=89.93 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHH-hCCCCCCceEEec--CeecCCcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEK-TGLDPQEQKVLFR--GKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~-tGipp~~QKLifk--GK~L~d~~~L~~~GvkdgSki~L 49 (214)
.||++||++|++. .|+||++|||+|. ||.|+|+.+|++|||++|++||+
T Consensus 34 ~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 34 ATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred CcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4899999999995 8999999999976 99999999999999999999887
No 89
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.14 E-value=4.5e-12 Score=103.33 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||++||.+|++.+||||++|||||+|+.|+|+.+|++|||++||+|+|+..
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 4899999999999999999999999999999999999999999999999975
No 90
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.11 E-value=6.7e-11 Score=90.30 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCe-----------e----cCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGK-----------E----KEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK-----------~----L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
.||.+||++|++.+||||++|+|+|.|+ . ++|+.+|..|||++|++|||+..+..
T Consensus 28 ~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 28 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGER 97 (107)
T ss_dssp SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSCC
T ss_pred CcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCCC
Confidence 4899999999999999999999999998 4 58999999999999999999987544
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.06 E-value=1.8e-10 Score=84.29 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec--CeecC---CcchhhhcCCCCCCEEEEeccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR--GKEKE---DNEHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk--GK~L~---d~~~L~~~GvkdgSki~Lv~~p 53 (214)
.||++||..|++.+|||++.|||+|. ||.++ |+.+|.+|||++|++|||..+.
T Consensus 21 ~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 21 TRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 58999999999999999999999997 48874 7889999999999999999864
No 92
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.00 E-value=2.3e-10 Score=104.92 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHH---HhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISE---KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e---~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
.||++||++|++ ++|||+++|||||+||.|+|+.+|..|||++|++|+++
T Consensus 28 ~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l 80 (368)
T 1oqy_A 28 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 80 (368)
T ss_dssp CBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred ChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence 489999999999 68899999999999999999999999999999999444
No 93
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.98 E-value=7e-10 Score=82.77 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecC------ee-c-CCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRG------KE-K-EDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkG------K~-L-~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+||++||.+|+..+|+||..|||+|.+ .. | +|..+|..|||.+|++||++..
T Consensus 33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 599999999999999999999999984 22 5 7999999999999999999884
No 94
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.72 E-value=1.3e-09 Score=92.10 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.||.+||.+|++.+||||++|||||.|++|+|+.+|+ ++|+|||+..
T Consensus 21 dTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 21 TSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ----------------------------------------------------
T ss_pred ChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 4899999999999999999999999999999999998 9999999853
No 95
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.69 E-value=2.4e-08 Score=70.92 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
+++..|+...+++.|+|+++|||+|.|+.+.++.|..+||+.+|+.|+++
T Consensus 22 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 22 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp SCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred ChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 46889999999999999999999999999999999999999999999986
No 96
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=1.9e-08 Score=75.56 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+++..|+...+++.|+|+++|||+|.|+.|.++.++.+|++.+|++|+++-.
T Consensus 28 t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 28 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 4788999999999999999999999999999999999999999999999864
No 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.68 E-value=3.6e-08 Score=71.49 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+++..|+...+++.|+++++|||+|.|+.|.++.|..+||+.+|+.|++++
T Consensus 29 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 29 SPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp SCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 468999999999999999999999999999999999999999999999874
No 98
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=9.8e-08 Score=71.38 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+++..|+...+++.|+|++++||+|.|+.|.++.|..+||+.+|+.|.++..
T Consensus 26 t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 26 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp SCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 4688999999999999999999999999999999999999999999999864
No 99
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.51 E-value=1.2e-07 Score=70.82 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+++..|+...+++.|++++++||+|.|+.|.++.|...||+.+|+.|+++..
T Consensus 38 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 38 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp SCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4689999999999999999999999999999999999999999999999864
No 100
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.47 E-value=1.6e-07 Score=71.89 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++|..|+...+++.|+++++|||+|.|+.|.++.|...|++.+|+.|+++-.
T Consensus 45 t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 45 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp SCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred ChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999864
No 101
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-06 Score=65.17 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHH
Q 028093 84 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLD 161 (214)
Q Consensus 84 ~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD 161 (214)
+..|..|+.++-.|.+++..+ .+. .+.|..+-|.|-+.++.||.|+++| .+|.+||.+|+.||.++.-||
T Consensus 9 i~~Ie~v~~r~r~l~~ell~~------~~~--s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lD 80 (89)
T 2d9d_A 9 ILKIEKVLKRMREIKNELLQA------QNP--SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYID 80 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHC------SCT--TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCc--hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888898888887 332 7889999999999999999999999 899999999999999999999
Q ss_pred HH
Q 028093 162 NL 163 (214)
Q Consensus 162 ~~ 163 (214)
--
T Consensus 81 lk 82 (89)
T 2d9d_A 81 LK 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 102
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.40 E-value=2.1e-07 Score=72.07 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++|..|+...+++.|+++++|||+|.|+.|.++.|..+|++.+|++|.++..
T Consensus 47 t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 47 TALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp SSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 4789999999999999999999999999999999999999999999999875
No 103
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.35 E-value=4.7e-07 Score=69.77 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++|..|+...+++.|++++++||+|.|+.|.++.|..+||+.+|+.|.++..
T Consensus 51 t~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 51 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4688999999999999999999999999999999999999999999999864
No 104
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.97 E-value=1.1e-05 Score=61.19 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeec--CCcchhhhc-CCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK--EDNEHLDVS-GMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L--~d~~~L~~~-GvkdgSki~Lv~~ 52 (214)
.|+..||++|++.|||||++|+|||.||.+ +...+-..| +-...+-|+|+..
T Consensus 34 etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 34 NTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 379999999999999999999999999986 555555555 3344467777754
No 105
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.91 E-value=1.8e-05 Score=61.89 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+++.-|+...+++.|+++..+||+|.|+.+.++.|..++|+.||++|.++.
T Consensus 61 t~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 61 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp SCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred ChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 367889999999999999999999999999999999999999999999875
No 106
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.7e-05 Score=67.32 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+++..|+...+++.|+++.++||+|.|+.+.++.|..++|+.+|++|.++-
T Consensus 49 t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 49 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp SCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 468899999999999999999999999999999999999999999999984
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.55 E-value=6.8e-05 Score=54.44 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCee---c--CCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE---K--EDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~---L--~d~~~L~~~GvkdgSki~Lv 50 (214)
+||++|+..|++.++++++.|.|.+.-.. + .++.+|+.+||++|+.|+|.
T Consensus 24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 24 ETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred ChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 58999999999999999988877554333 3 37889999999999999874
No 108
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.54 E-value=7.2e-05 Score=63.75 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+++..|+...+++.|+++..+||+|.|+.+.++.|..++|+.||++|.++..
T Consensus 77 TpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 77 TPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp SCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred ChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 4678899999999999999999999999999999999999999999999864
No 109
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.12 E-value=0.0014 Score=48.35 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHhCCCCC-CceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~-~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+||..|-+.-+.+-|||++ ..+|+|-|-.|+.+.++.+|++.||+-|-+|-
T Consensus 30 t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 30 FTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp SBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4788999999999999999 99999999999999999999999999998774
No 110
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.12 E-value=7.1e-05 Score=64.55 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.+..|+...+++.|++++.+|++|.|+.+.++.|..++|+.||++|.++-.
T Consensus 42 pL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 577889999999999999999999999999999999999999999999853
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.91 E-value=0.0018 Score=48.93 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+++.-|....+++.|++++..|++|.|..+.++.|..++|+.||+.|-+++
T Consensus 47 t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 47 SPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 357888999999999999999999999999999999999999999998763
No 112
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.42 E-value=0.0035 Score=52.64 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+++.-|+...+++.|++++++|++|.|+.+.++.+-..+++.|++.|.+...
T Consensus 41 ~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 41 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp SCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred CHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 3578899999999999999999999999999999999999999999998854
No 113
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.17 E-value=0.00083 Score=61.56 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++..|+...+++.|++++.+|++|.|+.+.++.|..++|++||+.|.++..
T Consensus 42 ~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 577899999999999999999999999999999999999999999999864
No 114
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.93 E-value=0.0013 Score=59.55 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++.-|+...+++.|+++.++|++|.|+.+.++.|-.++|+.+|+.|.++-+
T Consensus 51 ~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 51 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence 577899999999999999999999999999999999999999999998853
No 115
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.70 E-value=0.019 Score=43.45 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 3 IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 3 v~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
+.-|....+++.|+++...|++|.|..+.++.|-..+|+.+|+.|-++.-
T Consensus 43 l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 43 LQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp THHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred HHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 56788889999999999999999999999999999999999999988754
No 116
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.18 E-value=0.018 Score=42.20 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHhCCCC-----CCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093 1 MMIGDLKKAISEKTGLDP-----QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp-----~~QKLifkGK~L~d~~~L~~~GvkdgSki~L 49 (214)
.|+..|...+.+..+++. ...|+.-||..|.++..|..|||.+|+.|-+
T Consensus 27 ~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 27 HPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp SBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred hhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 378889999999999985 3468999999999999999999999998865
No 117
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.14 E-value=0.049 Score=40.80 Aligned_cols=55 Identities=7% Similarity=0.179 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
+|+-++=+..+++.|+++++-.|.|++|.+|-..+++-.||-+|+++-|+....+
T Consensus 30 t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 30 TVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp SBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred CCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 4678888899999999999999999999999999999999999999999986444
No 118
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.01 E-value=0.026 Score=44.67 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHHhCCCCC-------------------------------------CceEEe--cCeecCCcchhhhcCC
Q 028093 1 MMIGDLKKAISEKTGLDPQ-------------------------------------EQKVLF--RGKEKEDNEHLDVSGM 41 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~-------------------------------------~QKLif--kGK~L~d~~~L~~~Gv 41 (214)
.||++++..|+.+.||++. .|||-. .+..|++..+|.++||
T Consensus 32 ~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srtL~EQGI 111 (128)
T 2kc2_A 32 KTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQGV 111 (128)
T ss_dssp SSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSCHHHHTC
T ss_pred cCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCcHHHcCC
Confidence 4799999999999999955 456543 3467899999999999
Q ss_pred CCCCEEEEec
Q 028093 42 KDKSKVLLLE 51 (214)
Q Consensus 42 kdgSki~Lv~ 51 (214)
.++++|+|--
T Consensus 112 ~e~~tllLRr 121 (128)
T 2kc2_A 112 EEHETLLLRR 121 (128)
T ss_dssp CTTSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999988743
No 119
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=91.72 E-value=0.3 Score=34.78 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeec---CCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L---~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+.+|...|.. .|.++...+|+ |-.|.+ +.+.+|.++|+.+++.|++-+
T Consensus 28 ~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 28 NKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp SBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 378999999987 78888889998 557877 467899999999998888754
No 120
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=89.45 E-value=0.59 Score=39.08 Aligned_cols=51 Identities=10% Similarity=0.253 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHhCCCCC-CceEE--e-cCe--ecCC-cchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQ-EQKVL--F-RGK--EKED-NEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~-~QKLi--f-kGK--~L~d-~~~L~~~GvkdgSki~Lv~ 51 (214)
.||.+|++.+...+|||++ ..||- | .++ .|++ +.+|.++++.+|..|.|=.
T Consensus 150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp SBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred chHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4899999999999999997 68984 3 222 2444 6799999999998887633
No 121
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=88.99 E-value=0.73 Score=38.94 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHhCCCCC-CceEEe-c----CeecC-CcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQ-EQKVLF-R----GKEKE-DNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~-~QKLif-k----GK~L~-d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||.+|++.+....+|+++ ..||-+ . ...|. .+.+|.++++.+|..|.|=.
T Consensus 162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 4899999999999999997 689954 2 22354 56899999999997776633
No 122
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.71 E-value=0.44 Score=37.33 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFR 26 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifk 26 (214)
+||.+|+..|++..|+|+++|||-+=
T Consensus 66 ~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 66 SSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 58999999999999999999999643
No 123
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.76 E-value=3.6 Score=32.48 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHHhCCCC-------CCceEEecCeecCC--cchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDP-------QEQKVLFRGKEKED--NEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp-------~~QKLifkGK~L~d--~~~L~~~GvkdgSki~Lv~~ 52 (214)
+|+++|-+.|....|.+. .++||||-= -.+| +.+|+.+||++||.|.++..
T Consensus 20 ~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp CBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred cCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEcc
Confidence 478898888888888763 246666652 2333 67899999999999999875
No 124
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=75.51 E-value=5.1 Score=34.81 Aligned_cols=52 Identities=8% Similarity=0.169 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeec--CCcchhhhcCCCCC-CEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK--EDNEHLDVSGMKDK-SKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L--~d~~~L~~~Gvkdg-Ski~Lv~~ 52 (214)
.|+.++++.++..||++++.|.|+|.|..+ +...+.+.|+-... +-|+|+..
T Consensus 332 ~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (396)
T 4eut_A 332 NTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSR 386 (396)
T ss_dssp CBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred hHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEec
Confidence 378899999999999999999999999443 66666666644333 45666654
No 125
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=73.56 E-value=3.5 Score=31.70 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeec---CCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L---~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.||.+|...|... |.++....|+ |-.|.+ +.+.+|.++|+.+...|+|..
T Consensus 64 ~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 64 AKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3799999999887 8888888887 557888 358999999999988887764
No 126
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=69.69 E-value=6.6 Score=34.62 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHhC----CCCCCceEEe------cCeecCCcchhhhcCCCCCCEEEEe
Q 028093 1 MMIGDLKKAISEKTG----LDPQEQKVLF------RGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG----ipp~~QKLif------kGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
+||+++...|.++.. .++++--|+- +|.-|++..+|+.||+++|+.|..-
T Consensus 23 ~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 23 TMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 689999999988774 3567777877 6777988889999999999877665
No 127
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=68.42 E-value=8.8 Score=28.61 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE--ecCeecC---CcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEKE---DNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L~---d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|..-|....|.+.....|+ |--|.+. .+.+|.++|+.+...|++...
T Consensus 34 ~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 34 APLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp SBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 379999999999988887788886 4566774 478999999999977777653
No 128
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=65.94 E-value=15 Score=28.04 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCchhh--hhHHHHHHHHHHhhc--cccc--------ch-hhHHHHHHHHHHHHHH
Q 028093 90 VRAEVDKLSERVASLEVAVNGGTKVPSEEL--DTSAELLMKELLKLD--GIEA--------EG-EAKVQRKTEVRRVQKF 156 (214)
Q Consensus 90 i~~evd~L~~~V~~~e~~v~~~~k~~eke~--~~L~E~Lm~~LlkLD--~Ie~--------~G-d~R~~RK~~VkrVQ~~ 156 (214)
-..++..|..++..+...+..-.+-+|.=| .+-+|.|++.-..++ ++.. .| +.-..=-..+++||.+
T Consensus 16 ~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~I 95 (106)
T 4e61_A 16 SQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESI 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHH
Confidence 333555555555554443333333233323 556899999977663 2222 22 1111122578999998
Q ss_pred HHH
Q 028093 157 HET 159 (214)
Q Consensus 157 le~ 159 (214)
|=.
T Consensus 96 LYa 98 (106)
T 4e61_A 96 LYA 98 (106)
T ss_dssp HHH
T ss_pred Hhc
Confidence 843
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=61.99 E-value=22 Score=26.31 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHhCCCCCCceEE--ecCeecC--CcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVL--FRGKEKE--DNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L~--d~~~L~~~GvkdgSki~Lv~ 51 (214)
||.+|..-|... |..+...+|+ |=.|.+. .+.+|.++||.+...|+|-.
T Consensus 45 tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 45 NSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp BTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 788999988854 6667778886 5567773 68999999999987776654
No 130
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=61.73 E-value=3.9 Score=38.60 Aligned_cols=24 Identities=8% Similarity=0.342 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEE
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVL 24 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLi 24 (214)
+||.+|+..+++..|+|+++|||-
T Consensus 46 ~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 46 SSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp SBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred CCHHHHHHHHHHHhCcCcccEEEE
Confidence 589999999999999999999994
No 131
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.78 E-value=18 Score=26.81 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEe--cCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLif--kGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.++.+|+.+..++.+|+...-+|+. .|-+++|++++..+. ++..+|++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEc
Confidence 3688999999999999866666644 598999999988875 665666665
No 132
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=59.64 E-value=17 Score=26.97 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+++.||+.|+.+.|++-..-.+..-+..|+++.+|-+-+|+-.-.|-+..
T Consensus 14 pL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 14 PIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp BGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred cHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence 57889999999999999999998888999999999999999887777754
No 133
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=57.78 E-value=18 Score=26.75 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=21.7
Q ss_pred chhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028093 116 SEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNL 163 (214)
Q Consensus 116 eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~ 163 (214)
|.+|..+...|++.|-.+-+. .| .+||..|+.|+..|+..+.+
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~g---eerk~~i~~ie~~l~EA~el 53 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PP---DEKKQMVANVEKQLEEAREL 53 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CT---TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--Cc---HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554332 23 24555555555555544443
No 134
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=57.16 E-value=12 Score=28.58 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHH-hCCCCCCceEE--ecCeec-CCcchhhhcCCCCCCE
Q 028093 1 MMIGDLKKAISEK-TGLDPQEQKVL--FRGKEK-EDNEHLDVSGMKDKSK 46 (214)
Q Consensus 1 ~Tv~~LK~~l~e~-tGipp~~QKLi--fkGK~L-~d~~~L~~~GvkdgSk 46 (214)
.||.+|+.-|... .|.+.....|+ |-.|.+ +++.+|.++|+.+...
T Consensus 73 ~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 73 HRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred CCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 4799999999886 45666777886 557788 4679999999998543
No 135
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=56.72 E-value=20 Score=26.28 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred chhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028093 116 SEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNL 163 (214)
Q Consensus 116 eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~le~LD~~ 163 (214)
+.+|..+.+-|.+.|-.+=+. .|+ +||..|+.|+..++..+.+
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge---~Rk~~i~~ie~~ldEA~el 49 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLS---QRNTTLKHVEQQQDELFDL 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChH---HHHHHHHHHHHHHHHHHHH
Confidence 456667777777766555322 333 6777788887777666554
No 136
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=52.78 E-value=9.8 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCe
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGK 28 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK 28 (214)
++.+|+.+|+++.++|++..+|-|+-.
T Consensus 25 ~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 25 PYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 688999999999999999999999863
No 137
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=51.97 E-value=30 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|...| |+++...-+..+|.....+. -|++|++|-++-
T Consensus 24 ~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 24 RRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred CcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 3677776654 78887777888888875444 479999998874
No 138
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=46.35 E-value=31 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHhCCCCC--CceEE-e-cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDPQ--EQKVL-F-RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~--~QKLi-f-kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.|+.+|+.+..++.+++.. .-+|+ + .|-+++|++++..+. ++..+|++..
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEcC
Confidence 3789999999999999864 35653 3 688999999987765 7777777763
No 139
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=46.29 E-value=44 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028093 146 RKTEVRRVQKFHETLDNLK 164 (214)
Q Consensus 146 RK~~VkrVQ~~le~LD~~k 164 (214)
|...-.||..|-..|+.++
T Consensus 80 R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 80 RNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 140
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=45.89 E-value=15 Score=35.75 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCee-cCCcchhhhc
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVS 39 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~-L~d~~~L~~~ 39 (214)
.|+.+|+..+.+.||||++.|-|||.+.. +++..+...|
T Consensus 332 ~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 332 ENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 47899999999999999999999998766 4666676665
No 141
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=44.43 E-value=44 Score=26.54 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHh--CCCC------CCceEEe----cCee-cCC--c-----------chhhhcCCCCCCEEEEeccc
Q 028093 2 MIGDLKKAISEKT--GLDP------QEQKVLF----RGKE-KED--N-----------EHLDVSGMKDKSKVLLLEEL 53 (214)
Q Consensus 2 Tv~~LK~~l~e~t--Gipp------~~QKLif----kGK~-L~d--~-----------~~L~~~GvkdgSki~Lv~~p 53 (214)
||..+|++|-+.. |+|. ++.-|=+ .|+. |.| . .+|..|+|.||++|-|+...
T Consensus 52 TItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 52 TISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp BHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEEEEC-
T ss_pred cHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEEEECC
Confidence 8999999998874 5553 2334433 2333 432 1 28999999999999998753
No 142
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=41.33 E-value=32 Score=23.22 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHhC-----CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG-----LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-----ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+.+|...|..... ++.....+..+|+.... ..-|++|++|.++-
T Consensus 26 ~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 26 PTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 478888888765421 22334467777776643 34579999999874
No 143
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.91 E-value=68 Score=21.55 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHhCCCC--CCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDP--QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp--~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++|...|....++.. ..-.+.-+|....+ ...-|++|++|.++-
T Consensus 21 ~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 21 NDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp SSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred CcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 489999999986544332 33455566665332 234589999999874
No 144
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=39.52 E-value=28 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEe-cCe----ecCCcchhhhcCCCCCCEEEEe
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLF-RGK----EKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLif-kGK----~L~d~~~L~~~GvkdgSki~Lv 50 (214)
++.+|+.+|.++..+ +.+.|++ ++- ++.+++.|+.+ |..++||+|.
T Consensus 33 ~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~a-iqrn~KL~l~ 83 (85)
T 1ip9_A 33 TYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSNI-IQAKLKISVH 83 (85)
T ss_dssp CHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHHH-HHTTCCEEEE
T ss_pred CHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHHH-HHhcCeeEEe
Confidence 689999999999999 4555554 432 34444455443 6666677664
No 145
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=39.10 E-value=58 Score=23.39 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv 50 (214)
|+.+|... .|+++....+..+|..+.... ....-|++|++|-++
T Consensus 38 Tv~dLL~~----L~~~~~~vaVavNg~iV~~~~-~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 38 TIQDLLAS----YQLENKIVIVERNKEIIGKER-YHEVELCDRDVIEIV 81 (87)
T ss_dssp BHHHHHHH----TTCTTSCCEEEETTEEECGGG-TTTSBCCSSSEEEEE
T ss_pred cHHHHHHH----hCCCCCCEEEEECCEECChhh-cCCcCCCCCCEEEEE
Confidence 44444443 256655555666665553322 222346666666665
No 146
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=36.84 E-value=37 Score=27.18 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHhCCCC--CCceEE--ecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 1 MMIGDLKKAISEKTGLDP--QEQKVL--FRGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp--~~QKLi--fkGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
.++.+|+.+.+++.+|+. ..-+|+ ..|-+++|++++..+. ++..+|++..
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~~ 135 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALAS 135 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEECS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEECC
Confidence 368899999999999976 355553 3588899999988875 7777777764
No 147
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=35.24 E-value=55 Score=21.47 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|...| |+++....+..+|.....+. -...-|++|++|.++-
T Consensus 14 ~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 14 KTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVA 59 (64)
T ss_dssp CCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEE
T ss_pred CcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEe
Confidence 4677777665 77777777788887764332 2234589999998874
No 148
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=34.11 E-value=66 Score=21.24 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHH
Q 028093 91 RAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKEL 130 (214)
Q Consensus 91 ~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~L 130 (214)
...|-+++.||..+ |+.+..|.+++|+-|
T Consensus 16 ~~Rl~rVE~qV~~m-----------d~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 16 GARLNRVEDKVTQL-----------DQRLALITDMLHQLL 44 (49)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 34677788888887 667778888888543
No 149
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=33.76 E-value=1.2e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHHhC-C-----C-------CCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG-L-----D-------PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-i-----p-------p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++|...|..... + . .....+.-+|.......-+ ..-|++|+.|.++-
T Consensus 26 ~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 26 DTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILP 88 (93)
T ss_dssp SBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEEC
Confidence 489999999987752 0 0 0123555566554432222 34589999998875
No 150
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.70 E-value=25 Score=24.22 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|... .|+++....+..+|+....+ .-|++|++|-++-
T Consensus 31 ~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 31 MKVRDILRA----VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCHHHHHHT----TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred CcHHHHHHH----hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 366776655 46787777888888887544 4579998887653
No 151
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=33.28 E-value=62 Score=21.29 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
+|+.+|...| ++++....+..+|....... ....-|++|++|.++-
T Consensus 16 ~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 16 QTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEEE
T ss_pred CcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEEe
Confidence 3677776664 77777777777777764332 2334589999998874
No 152
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=29.25 E-value=2e+02 Score=22.36 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-----------HHhhCC-CCCCchhhhhHHHHHHHHHHhhcccc
Q 028093 78 EEMRKALQAIAGVRAEVDKLSERVA--------SLE-----------VAVNGG-TKVPSEELDTSAELLMKELLKLDGIE 137 (214)
Q Consensus 78 ~~~~~a~~aI~~i~~evd~L~~~V~--------~~e-----------~~v~~~-~k~~eke~~~L~E~Lm~~LlkLD~Ie 137 (214)
+.|..-.+.|..++..+++|..-|+ .|. .++... -+...++-..|+..|...|++||.-.
T Consensus 21 ~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA 100 (130)
T 3zsu_A 21 TRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGA 100 (130)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777665553 111 111111 23457889999999999999999875
Q ss_pred cchh---hHHHHHHHHHHHHHHHH
Q 028093 138 AEGE---AKVQRKTEVRRVQKFHE 158 (214)
Q Consensus 138 ~~Gd---~R~~RK~~VkrVQ~~le 158 (214)
..++ +..+=...+.-..+||+
T Consensus 101 ~~~n~~~a~k~Y~~a~adfdafl~ 124 (130)
T 3zsu_A 101 DLDSVTVAQEGFREAEADFKAYLN 124 (130)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5553 44444445555555553
No 153
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=27.80 E-value=98 Score=21.17 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|-. ..|+++...-+.++|..+..+ .....-|++|++|-++-
T Consensus 16 Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 16 SVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp BHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred cHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 4555443 479999888888998877433 34556689999999874
No 154
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=27.27 E-value=29 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHH--hCCCC------CCceEEec----CeecCC-------------cchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEK--TGLDP------QEQKVLFR----GKEKED-------------NEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~--tGipp------~~QKLifk----GK~L~d-------------~~~L~~~GvkdgSki~Lv~ 51 (214)
||..+|++|-+. -|+|. ++.-|=|+ |+.|.| -.||..|+|.||++|.|+-
T Consensus 35 TItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 35 TISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp BHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEEEe
Confidence 789999988765 45553 45567663 344433 2478899999999998864
No 155
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=27.08 E-value=1.4e+02 Score=20.16 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHhC------C-----CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG------L-----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG------i-----pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+.+|...|..... + ......+..+|+....... ...-|++|+.|.++-
T Consensus 25 ~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 25 SKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLFP 85 (90)
T ss_dssp CBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEEC
T ss_pred CcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEeC
Confidence 478888888877641 1 1134467777776542111 233489999998874
No 156
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=26.57 E-value=1.7e+02 Score=21.53 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 028093 78 EEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFH 157 (214)
Q Consensus 78 ~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~VkrVQ~~l 157 (214)
+.+..+.+||..+...+..++--|.++...|+.+.--.-.++-+ -=.-|.+ .-++-|.-+|+.|.+|
T Consensus 13 eSI~~TNeAV~EVt~glsqlaVAIqaIQD~IN~~l~~~~~~~s~-~~~~~~~------------~~~~~~~~~~~~~~~~ 79 (89)
T 1wp7_A 13 SSIESTNEAVVKLQETAEKTVYVLTALQDYGGSGGSGGKVDISS-QISSMNQ------------SLQQSKDYIKEAQRLL 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHH-HHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhh-hHHHHHH------------HHHHhHHHHHHHHHHH
Confidence 45778888999988888888877777766665543211111111 1112333 2256678888999888
Q ss_pred HHH
Q 028093 158 ETL 160 (214)
Q Consensus 158 e~L 160 (214)
++.
T Consensus 80 ~~~ 82 (89)
T 1wp7_A 80 DTV 82 (89)
T ss_dssp TTC
T ss_pred HHh
Confidence 765
No 157
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=26.02 E-value=1.6e+02 Score=20.09 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHhC-CC----------CCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG-LD----------PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-ip----------p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++|...|..... +. .....+.-+|+.... .+-|++|+.|.++-
T Consensus 28 ~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 28 ATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp CBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 489999999987652 10 012456667766654 34489999999874
No 158
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.08 E-value=1.8e+02 Score=20.42 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHhC-C----------CCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 1 MMIGDLKKAISEKTG-L----------DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 1 ~Tv~~LK~~l~e~tG-i----------pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
.|+++|...|..... + ......+..+|+.... .+-|++|++|.++-
T Consensus 37 ~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 37 ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP 93 (98)
T ss_dssp CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES
T ss_pred CCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC
Confidence 488999998887631 1 1233456666666543 45589999998874
No 159
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=24.30 E-value=77 Score=28.84 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093 3 IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 55 (214)
Q Consensus 3 v~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s 55 (214)
..++-..|.-..|.|| +++-|.||.+-..++....|+...+-|.|+-+|..
T Consensus 153 ~~~i~~il~~~LG~pP--~~F~~~gk~~TP~~F~~~v~~~~~dyV~l~n~p~~ 203 (383)
T 3pw3_A 153 KKAVAAVHQIYLGVPP--EKFTYKGKEYTPKSFFESTGLKASDYVSLTSYTHH 203 (383)
T ss_dssp HHHHHHHHHHHHCCCC--SSEEETTEEECHHHHHHHHTCCGGGEEEEECCSSS
T ss_pred HHHHHHHHHHHhCCCC--ceEEecCCCcCHHHHHHHhCCCccceEEEeeCCCC
Confidence 3567788999999999 57888999998888888889988999999998853
No 160
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=23.46 E-value=38 Score=26.09 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHH--hCCCC------CCceEEe-cCe---e-cCC-------------cchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEK--TGLDP------QEQKVLF-RGK---E-KED-------------NEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~--tGipp------~~QKLif-kGK---~-L~d-------------~~~L~~~GvkdgSki~Lv~~ 52 (214)
||..+|++|-+. -|+|. ++.-|=| .|. . |.| -.||..|+|.||++|-|+-.
T Consensus 38 TItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 38 TITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALVSK 114 (117)
T ss_dssp BHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred chHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEEEeC
Confidence 789999988765 46663 3456655 342 2 322 24788999999999999753
No 161
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=23.41 E-value=55 Score=25.44 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEe--cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLif--kGK~L~d~~~L~~~GvkdgSki~Lv~~ 52 (214)
++.+|+.+..++.++. ..-+|+. .|-+++|+++..... ++..+|++..
T Consensus 55 SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 104 (122)
T 1d4b_A 55 TRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQS 104 (122)
T ss_dssp CSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS--SCCCCCEECS
T ss_pred CHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC--CCCEEEEecC
Confidence 5778999999999994 4556643 699999999988875 7766776663
No 162
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.21 E-value=96 Score=21.32 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=25.2
Q ss_pred HHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 10 ISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 10 l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|-+..|+|++.--++.+|+....+. +.+|++|-++.
T Consensus 26 LL~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 26 LVRAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp HHHTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred HHHHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 3455899998887788888774444 34588887763
No 163
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.79 E-value=76 Score=29.71 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHhCCCCCCceEEecC------eecC-Ccchhhhc--CCCCCCEEEEecc
Q 028093 2 MIGDLKKAISEKTGLDPQEQKVLFRG------KEKE-DNEHLDVS--GMKDKSKVLLLEE 52 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~QKLifkG------K~L~-d~~~L~~~--GvkdgSki~Lv~~ 52 (214)
++.+|-..|.++.|+|++.--.+|.- -.++ .+.++..+ +|.+|+- +++..
T Consensus 158 kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI-I~fQ~ 216 (530)
T 2ylm_A 158 KIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI-IVFQK 216 (530)
T ss_dssp BGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE-EEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE-EEEEe
Confidence 57788889999999999988777862 2256 68899999 9999965 55554
No 164
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=21.53 E-value=1.3e+02 Score=19.80 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhCCCCCCc--eEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093 2 MIGDLKKAISEKTGLDPQEQ--KVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51 (214)
Q Consensus 2 Tv~~LK~~l~e~tGipp~~Q--KLifkGK~L~d~~~L~~~GvkdgSki~Lv~ 51 (214)
|+.+|...|..... ..... .+..+|+....+ .-|++|++|.++-
T Consensus 27 tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 27 TVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp EHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 78888888876631 01223 677788776543 4579999998874
No 165
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=21.50 E-value=2.9e+02 Score=21.53 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHhhCC------------CCCCchhhhhHHHHHHHHHHhhccc
Q 028093 78 EEMRKALQAIAGVRAEVDK-LSERVA--------SLEVAVNGG------------TKVPSEELDTSAELLMKELLKLDGI 136 (214)
Q Consensus 78 ~~~~~a~~aI~~i~~evd~-L~~~V~--------~~e~~v~~~------------~k~~eke~~~L~E~Lm~~LlkLD~I 136 (214)
+.|..-.+.|..++..+++ |..-|+ .|..++.+. -+...++-..|+..|...|++||.-
T Consensus 23 ~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~A 102 (133)
T 3ls0_A 23 AQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAA 102 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777 665553 222222111 0123578899999999999999987
Q ss_pred ccchh---hHHHHHHHHHHHHHHHH
Q 028093 137 EAEGE---AKVQRKTEVRRVQKFHE 158 (214)
Q Consensus 137 e~~Gd---~R~~RK~~VkrVQ~~le 158 (214)
...++ +..+=..++.-..+||+
T Consensus 103 A~~~n~~~a~k~Y~~a~adfdafl~ 127 (133)
T 3ls0_A 103 AKDRNGSQAKIQYQEALADFDSFLN 127 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 55553 44444445555555543
No 166
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.35 E-value=1.8e+02 Score=18.96 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHh
Q 028093 83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLK 132 (214)
Q Consensus 83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~Llk 132 (214)
|-+.|.....+||.|.+++..- ..+|..+.+.|=+.|..
T Consensus 10 AERsV~KLek~ID~LEdeL~~e-----------Kek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQ-----------KLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHH
Confidence 4456677777888888877543 34566666665554433
Done!