Query 028094
Match_columns 214
No_of_seqs 231 out of 1364
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7E-26 2.4E-30 159.9 6.1 60 46-105 2-62 (63)
2 1u3e_M HNH homing endonuclease 93.5 0.00073 2.5E-08 54.8 -7.5 70 15-88 78-147 (174)
3 3igm_B PF14_0633 protein; AP2 87.3 0.37 1.3E-05 34.6 2.7 28 42-71 3-31 (77)
4 3jtz_A Integrase; four strande 79.6 4.5 0.00015 29.1 5.9 44 50-93 28-75 (88)
5 1z1b_A Integrase; protein-DNA 75.9 3.3 0.00011 34.9 4.9 42 48-93 14-55 (356)
6 3ju0_A Phage integrase; four s 66.7 11 0.00037 28.1 5.4 44 50-93 28-75 (108)
7 1x60_A Sporulation-specific N- 34.1 27 0.00092 23.5 2.6 22 68-89 45-66 (79)
8 1uta_A FTSN, MSGA, cell divisi 29.7 47 0.0016 22.6 3.3 23 67-89 44-66 (81)
9 1kcq_A Gelsolin, brevin, ADF, 27.5 88 0.003 22.3 4.6 36 56-91 27-62 (104)
10 2bn8_A CEDA, cell division act 26.9 22 0.00076 25.3 1.1 39 44-85 37-75 (87)
11 2ftc_I Mitochondrial ribosomal 26.3 95 0.0032 23.4 4.7 35 58-94 80-114 (118)
12 1svq_A Severin; actin-binding; 24.6 77 0.0026 23.2 3.9 36 56-91 37-72 (114)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=7e-26 Score=159.88 Aligned_cols=60 Identities=55% Similarity=0.818 Sum_probs=57.1
Q ss_pred ceeEEEECCCCceEEEEeecCC-CceEEecCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Q 028094 46 VYRGVRRRDSGKWVCEVREPNK-KSRIWLGTFPTAEMAARAHDVAAIALRGRLACLNFADS 105 (214)
Q Consensus 46 ~yrGVr~r~~GkW~a~I~~~~~-~kri~LGtf~t~eeAArAyD~aa~~~~G~~a~~NFp~s 105 (214)
+||||++|++|||+|+|++|.+ +++||||||+|+||||+|||.|+++++|..+++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999998889999999999985 79999999999999999999999999999999999986
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=93.50 E-value=0.00073 Score=54.78 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=49.2
Q ss_pred CCCCccceeecccCCcccccCCCCCCCCCCCceeEEEECCCCceEEEEeecCCCceEEecCCCCHHHHHHHHHH
Q 028094 15 GNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDV 88 (214)
Q Consensus 15 ~~~~~~~~~~~~~~~~k~~~~r~~~~~~~~s~yrGVr~r~~GkW~a~I~~~~~~kri~LGtf~t~eeAArAyD~ 88 (214)
++..++++.+|+-.+++.+..++....++ ..++||...+.++|.+.|.. . +.++||.|+|.+|||++|.+
T Consensus 78 g~k~nn~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 78 GNKDNNLSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp SCTTCCCGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred CCCCCCCHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 66778888888888887776554333322 22567733334678888887 4 56779999999999999653
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.30 E-value=0.37 Score=34.64 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCCCceeEE-EECCCCceEEEEeecCCCceE
Q 028094 42 TRHPVYRGV-RRRDSGKWVCEVREPNKKSRI 71 (214)
Q Consensus 42 ~~~s~yrGV-r~r~~GkW~a~I~~~~~~kri 71 (214)
+..|+|.|| +..+.+.|+|+-.+ ++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 568999999 45566999999998 45443
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=79.63 E-value=4.5 Score=29.08 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=31.5
Q ss_pred EEECCCC--ceEEEEeecCCCceEEecCCC--CHHHHHHHHHHHHHHh
Q 028094 50 VRRRDSG--KWVCEVREPNKKSRIWLGTFP--TAEMAARAHDVAAIAL 93 (214)
Q Consensus 50 Vr~r~~G--kW~a~I~~~~~~kri~LGtf~--t~eeAArAyD~aa~~~ 93 (214)
|+-++.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 499998886677889999998 4788877766655544
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=75.94 E-value=3.3 Score=34.91 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=30.1
Q ss_pred eEEEECCCCceEEEEeecCCCceEEecCCCCHHHHHHHHHHHHHHh
Q 028094 48 RGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIAL 93 (214)
Q Consensus 48 rGVr~r~~GkW~a~I~~~~~~kri~LGtf~t~eeAArAyD~aa~~~ 93 (214)
.||++++.|.|..+... +|+++.+|. |..+|......+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 45777777899877654 778899996 8888877665544433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=66.69 E-value=11 Score=28.11 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=30.7
Q ss_pred EEECCCC--ceEEEEeecCCCceEEecCCCC--HHHHHHHHHHHHHHh
Q 028094 50 VRRRDSG--KWVCEVREPNKKSRIWLGTFPT--AEMAARAHDVAAIAL 93 (214)
Q Consensus 50 Vr~r~~G--kW~a~I~~~~~~kri~LGtf~t--~eeAArAyD~aa~~~ 93 (214)
|+-.+.| .|+-+.+..++.+++-||.|+. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 4999888866778899999984 777776666554444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.07 E-value=27 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.0
Q ss_pred CceEEecCCCCHHHHHHHHHHH
Q 028094 68 KSRIWLGTFPTAEMAARAHDVA 89 (214)
Q Consensus 68 ~kri~LGtf~t~eeAArAyD~a 89 (214)
--|+++|.|.+.++|..+-+..
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L 66 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARA 66 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHH
Confidence 3588999999999998886543
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.68 E-value=47 Score=22.55 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.4
Q ss_pred CCceEEecCCCCHHHHHHHHHHH
Q 028094 67 KKSRIWLGTFPTAEMAARAHDVA 89 (214)
Q Consensus 67 ~~kri~LGtf~t~eeAArAyD~a 89 (214)
.--|+.+|-|.+.++|..+-+..
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L 66 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRL 66 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHH
Confidence 34689999999999998886553
No 9
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=27.50 E-value=88 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.8
Q ss_pred CceEEEEeecCCCceEEecCCCCHHHHHHHHHHHHH
Q 028094 56 GKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAI 91 (214)
Q Consensus 56 GkW~a~I~~~~~~kri~LGtf~t~eeAArAyD~aa~ 91 (214)
..--|.|...++.-.+|.|...+..|...|-+.|..
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~ 62 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445688888777789999999999999999887754
No 10
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=26.92 E-value=22 Score=25.33 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCceeEEEECCCCceEEEEeecCCCceEEecCCCCHHHHHHH
Q 028094 44 HPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARA 85 (214)
Q Consensus 44 ~s~yrGVr~r~~GkW~a~I~~~~~~kri~LGtf~t~eeAArA 85 (214)
--+||-|+.-+ |||+|.+.... .-.---.|..+|.|-|=
T Consensus 37 md~frdvw~lr-gkyvafvl~ge--~frrspafsvpesaqrw 75 (87)
T 2bn8_A 37 MDSFRDVWMLR-GKYVAFVLMGE--SFLRSPAFTVPESAQRW 75 (87)
T ss_dssp TTTCTTEEEET-TEEEEBCCSSS--CCCBCCCBSSHHHHHHH
T ss_pred cccchhheeec-cceEEEEEech--hhccCCccCCcHHHHHH
Confidence 35699997654 89999987622 21123467777777653
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.28 E-value=95 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=27.6
Q ss_pred eEEEEeecCCCceEEecCCCCHHHHHHHHHHHHHHhc
Q 028094 58 WVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALR 94 (214)
Q Consensus 58 W~a~I~~~~~~kri~LGtf~t~eeAArAyD~aa~~~~ 94 (214)
|+|.|.. ...-+-++...+++.|..|...|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999985 4444557766889999999999888764
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=24.61 E-value=77 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.4
Q ss_pred CceEEEEeecCCCceEEecCCCCHHHHHHHHHHHHH
Q 028094 56 GKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAI 91 (214)
Q Consensus 56 GkW~a~I~~~~~~kri~LGtf~t~eeAArAyD~aa~ 91 (214)
..=-|.|...++.-.+|.|...+..|-+.|-..|..
T Consensus 37 ns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~ 72 (114)
T 1svq_A 37 NSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72 (114)
T ss_dssp CTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334578888777889999999999999999887755
Done!