BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028097
         (214 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1MZ55|PRMA_LEUCK Ribosomal protein L11 methyltransferase OS=Leuconostoc citreum
           (strain KM20) GN=prmA PE=3 SV=1
          Length = 292

 Score = 31.2 bits (69), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 72  PDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGV-----GITNALINARKAL 126
           P  AF      T+  +IQ +  +VR G  +  VGT + ++ V     G+ + L      +
Sbjct: 126 PKLAFGTGTHETTRLMIQALENVVRGGESMIDVGTGSGVLAVAAKQLGVAHVLATDIDEM 185

Query: 127 DTSFAGE-------AEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRI 169
             + A E       A+DV ++++ +   V ++    +   +LA VIE+ I
Sbjct: 186 SVNVAKENLRLNPVAQDVTVVASDLLADVVISPVDLIVANILADVIERLI 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,704,697
Number of Sequences: 539616
Number of extensions: 2659507
Number of successful extensions: 8419
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8418
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)