Query 028097
Match_columns 214
No_of_seqs 109 out of 134
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_Q JAZ1 incomplete degron 10.7 67 0.0023 18.0 0.3 8 15-22 9-16 (22)
2 2lis_A Sperm lysin; abalone ly 10.3 3.3E+02 0.011 21.4 4.4 48 159-208 22-70 (136)
3 3l32_A Phosphoprotein; antipar 10.2 3.8E+02 0.013 17.3 3.9 33 7-40 12-44 (45)
4 3lyn_A Sperm lysin; abalone ly 8.5 4.3E+02 0.015 20.9 4.3 48 158-207 21-69 (136)
5 2jm6_A NOXA; apoptosis, BCL-2, 8.0 1.5E+02 0.0052 17.2 1.1 13 150-162 14-26 (27)
6 3tsh_A Pollen allergen PHL P 4 7.7 1.7E+02 0.0058 26.6 2.0 23 119-141 474-498 (500)
7 2np0_B Synaptotagmin-2; botuli 7.2 1.7E+02 0.0058 16.5 1.1 12 16-27 9-20 (26)
8 2au5_A Conserved domain protei 6.6 3.8E+02 0.013 20.8 3.2 29 10-39 46-74 (139)
9 2j7a_C Cytochrome C quinol deh 6.1 2.4E+02 0.0082 21.6 1.9 24 99-122 13-36 (159)
10 3ogl_Q JAZ1 incomplete degron 5.7 1.5E+02 0.0052 16.4 0.3 8 14-21 13-20 (21)
No 1
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=10.66 E-value=67 Score=17.98 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=6.4
Q ss_pred Hhhcchhh
Q 028097 15 LERRRENF 22 (214)
Q Consensus 15 ~~~R~~~F 22 (214)
++||+|++
T Consensus 9 leKRk~R~ 16 (22)
T 3ogk_Q 9 LEKRKDRV 16 (26)
T ss_pred HHHHHHHh
Confidence 67888886
No 2
>2lis_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.35A {Haliotis rufescens} SCOP: a.19.1.1 PDB: 1lyn_A 1lis_A 2lyn_A
Probab=10.25 E-value=3.3e+02 Score=21.42 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHh
Q 028097 159 QVLAGVIEQRILEPLLHENKIILAAICF-AFRTGNTFLGSLMWVDYARWVG 208 (214)
Q Consensus 159 Q~l~G~~e~r~~e~~~~~~~~~~~~~~~-~~R~~Nn~~G~~~~vd~Ar~~G 208 (214)
|+|+|+ | +-+..++.+++-..+.+-. .+++.|-..==..|-++.+|..
T Consensus 22 ~ii~~~-D-~kl~~w~rrhg~~l~~~q~k~l~fvNRr~m~t~W~nY~~w~~ 70 (136)
T 2lis_A 22 QIIAGF-D-RGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWIN 70 (136)
T ss_dssp HHHHHH-H-HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-H-HHHHHHHHHCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 4 5555566555443344444 6899998888888999988875
No 3
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=10.22 E-value=3.8e+02 Score=17.34 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHH
Q 028097 7 VFTKTAAELERRRENFSKELDFVFADVVMAIIAD 40 (214)
Q Consensus 7 i~~~~~aE~~~R~~~F~~E~D~v~~d~v~~~v~n 40 (214)
+.+.++-.|+. ||+|++=|--+.-|.+.=...|
T Consensus 12 vG~qiVrkmKt-Ge~FfKiWS~~~e~I~sYV~~N 44 (45)
T 3l32_A 12 VGVQIVRQMRS-GERFLKIWSQTVEEIVSYVTVN 44 (45)
T ss_dssp HHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cccHHHHHHHHHHHHHHHHhcc
Confidence 45566677775 9999887776665555444333
No 4
>3lyn_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.70A {Haliotis fulgens} SCOP: a.19.1.1
Probab=8.46 E-value=4.3e+02 Score=20.87 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHH
Q 028097 158 YQVLAGVIEQRILEPLLHENKIILAAICF-AFRTGNTFLGSLMWVDYARWV 207 (214)
Q Consensus 158 YQ~l~G~~e~r~~e~~~~~~~~~~~~~~~-~~R~~Nn~~G~~~~vd~Ar~~ 207 (214)
=|||.|. +|-+...+.+++-..+.+-. ++++.|-..==.+|-.|-.|.
T Consensus 21 ~~IIagf--Drkl~~wlr~Hg~~ls~iq~k~lyFvNRrymqt~W~nym~W~ 69 (136)
T 3lyn_A 21 IQIISGF--DRQLTAWLRVHGRRLTNNQKKTLFFVNRRYMQTHWQNYMLWV 69 (136)
T ss_dssp HHHHHHH--HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHCCCCCCchhhhhhhhhhHHHHHHhHHHHHHHH
Confidence 3999999 67777777766654455544 688888777666676666554
No 5
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=7.96 E-value=1.5e+02 Score=17.16 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=8.2
Q ss_pred hhhchhhHHHHHH
Q 028097 150 MAVSSNLRYQVLA 162 (214)
Q Consensus 150 mGvSsNlRYQ~l~ 162 (214)
.|=--|+||.++|
T Consensus 14 ~gdkln~rqklln 26 (27)
T 2jm6_A 14 IGDKVNLRQKLLN 26 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhc
Confidence 3445577777765
No 6
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=7.69 E-value=1.7e+02 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=15.9
Q ss_pred HHHHHHhcCcC--cCCCCCCCchhh
Q 028097 119 LINARKALDTS--FAGEAEDVPIIS 141 (214)
Q Consensus 119 l~~~Rk~~~~~--~~~~~~~~P~l~ 141 (214)
|..+|+++||+ |.-+..-||+++
T Consensus 474 L~~IK~kyDP~nvF~~~qsI~Pl~~ 498 (500)
T 3tsh_A 474 LAITKGKVDPTDYFRNEQSIPPLIK 498 (500)
T ss_dssp HHHHHHHHCTTCCSCCTTSCCCCCC
T ss_pred HHHHHHHhCcccccCCCCCCCCCCC
Confidence 78899999996 443333567654
No 7
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=7.17 E-value=1.7e+02 Score=16.51 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=8.0
Q ss_pred hhcchhhhhHHH
Q 028097 16 ERRRENFSKELD 27 (214)
Q Consensus 16 ~~R~~~F~~E~D 27 (214)
++=+++|++|++
T Consensus 9 ~~~k~kf~nel~ 20 (26)
T 2np0_B 9 AKLKEKFFNEIN 20 (26)
T ss_pred HHHHHHHHHHHH
Confidence 334568998874
No 8
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=6.62 E-value=3.8e+02 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHhhcchhhhhHHHHHHHHHHHHHHH
Q 028097 10 KTAAELERRRENFSKELDFVFADVVMAIIA 39 (214)
Q Consensus 10 ~~~aE~~~R~~~F~~E~D~v~~d~v~~~v~ 39 (214)
-+++||++ -+++++|--=-.--+++++.+
T Consensus 46 ~VL~~ME~-~P~WL~Es~~~~Q~~iV~SL~ 74 (139)
T 2au5_A 46 IVLAEMEK-DPNWLEEAAGGMQGVIVQSLL 74 (139)
T ss_dssp HHHHHHHH-CTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-CchHHHHHHHHhHHHHHHHHh
Confidence 47889997 778888854444445555544
No 9
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=6.11 E-value=2.4e+02 Score=21.61 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHH
Q 028097 99 AKLFAVGTSASLVGVGITNALINA 122 (214)
Q Consensus 99 ~~l~~VG~~ag~vg~~lsn~l~~~ 122 (214)
..+.++|++.|++.....+..+..
T Consensus 13 ~~~~~~g~~~g~~~~~~~~~~~~~ 36 (159)
T 2j7a_C 13 LKLVLGGATLGVVALATVAFGMKY 36 (159)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhc
Confidence 447778888988877666666654
No 10
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=5.66 E-value=1.5e+02 Score=16.37 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=5.6
Q ss_pred HHhhcchh
Q 028097 14 ELERRREN 21 (214)
Q Consensus 14 E~~~R~~~ 21 (214)
=++||+++
T Consensus 13 FleKRk~R 20 (21)
T 3ogl_Q 13 FLEKRKDR 20 (26)
T ss_pred HHHHhhcc
Confidence 36788876
Done!