Query 028097
Match_columns 214
No_of_seqs 109 out of 134
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 09:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028097.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028097hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0l_ f.31.1.1 (L:) Photosys 12.2 1.4E+02 0.011 22.0 4.9 22 129-150 97-118 (151)
2 d2jfga1 c.5.1.1 (A:1-93) UDP-N 11.7 33 0.0024 22.2 0.9 25 96-122 3-27 (93)
3 d3beda1 c.54.1.1 (A:1-132) PTS 9.5 8.9 0.00065 27.7 -3.1 35 14-48 44-82 (132)
4 d1ldna1 c.2.1.5 (A:15-162) Lac 9.5 32 0.0023 24.7 0.1 23 97-121 5-27 (148)
5 d1rkxa_ c.2.1.2 (A:) CDP-gluco 9.1 43 0.0032 25.7 0.8 27 95-122 5-31 (356)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.9 3.1E+02 0.023 22.0 6.0 58 21-78 70-134 (405)
7 d2au5a1 a.244.1.1 (A:1-132) Hy 6.7 1.8E+02 0.013 20.7 3.2 29 10-39 43-71 (132)
8 d1ibxa_ d.15.2.1 (A:) Caspase- 6.3 75 0.0054 21.3 0.8 22 65-86 57-79 (81)
9 d1k0ia2 d.16.1.2 (A:174-275) p 6.2 75 0.0054 22.3 0.8 9 20-28 64-72 (102)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 5.9 1.2E+02 0.0087 18.8 1.6 22 2-23 26-47 (55)
No 1
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=12.23 E-value=1.4e+02 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=15.6
Q ss_pred CcCCCCCCCchhhhhhhhHHHh
Q 028097 129 SFAGEAEDVPIISTSVAYGVYM 150 (214)
Q Consensus 129 ~~~~~~~~~P~l~ta~~~g~fm 150 (214)
+|+++.+++.-++|+-+|+-|-
T Consensus 97 sf~~~~~~~d~l~t~~gWs~F~ 118 (151)
T d1jb0l_ 97 SFQKGGSSSDPLKTSEGWSQFT 118 (151)
T ss_dssp HTSSCCCSSCGGGSHHHHHHHH
T ss_pred cCCCCCCCcccccCcccHHHhh
Confidence 4555555667799999998654
No 2
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=11.71 E-value=33 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 028097 96 RNGAKLFAVGTSASLVGVGITNALINA 122 (214)
Q Consensus 96 ~kg~~l~~VG~~ag~vg~~lsn~l~~~ 122 (214)
+||.+..++|+ |.-|.++++.|...
T Consensus 3 ~~~K~v~ViGl--G~sG~s~a~~L~~~ 27 (93)
T d2jfga1 3 YQGKNVVIIGL--GLTGLSCVDFFLAR 27 (93)
T ss_dssp CTTCCEEEECC--SHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeE--CHHHHHHHHHHHHC
Confidence 47788888887 44577788877643
No 3
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=9.55 E-value=8.9 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=26.7
Q ss_pred HHhhcchhhhhHHH----HHHHHHHHHHHHHHHHHhhcc
Q 028097 14 ELERRRENFSKELD----FVFADVVMAIIADFMLVWLPA 48 (214)
Q Consensus 14 E~~~R~~~F~~E~D----~v~~d~v~~~v~nf~lv~llA 48 (214)
++++|=+.+++|.| ++++|+.-|+.+|.++.++.-
T Consensus 44 ~~~~~l~~~~~~~~~~~vliltDl~GGTP~N~a~~~~~~ 82 (132)
T d3beda1 44 GTQAKLAAILKEAGNVPTLVLADLKGGTPCNVAMMAMGT 82 (132)
T ss_dssp HHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCCCCCEEEEEecccCChhHHHHHHHhc
Confidence 55555556666665 899999999999999887643
No 4
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.54 E-value=32 Score=24.67 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=19.0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHH
Q 028097 97 NGAKLFAVGTSASLVGVGITNALIN 121 (214)
Q Consensus 97 kg~~l~~VG~~ag~vg~~lsn~l~~ 121 (214)
++.|++.+| +|-+|..++..|..
T Consensus 5 ~~~KI~IiG--aG~vG~~~a~~l~~ 27 (148)
T d1ldna1 5 GGARVVVIG--AGFVGASYVFALMN 27 (148)
T ss_dssp TSCEEEEEC--CSHHHHHHHHHHHH
T ss_pred CCCeEEEEC--cCHHHHHHHHHHHh
Confidence 467889999 48899999988865
No 5
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=9.12 E-value=43 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.6
Q ss_pred HhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 028097 95 VRNGAKLFAVGTSASLVGVGITNALINA 122 (214)
Q Consensus 95 ~~kg~~l~~VG~~ag~vg~~lsn~l~~~ 122 (214)
|+|+.+..+.|. +|.+|..++..|+..
T Consensus 5 ~~~~KkILVTG~-tGfIGs~lv~~Ll~~ 31 (356)
T d1rkxa_ 5 FWQGKRVFVTGH-TGFKGGWLSLWLQTM 31 (356)
T ss_dssp HHTTCEEEEETT-TSHHHHHHHHHHHHT
T ss_pred hhCCCEEEEECC-CCHHHHHHHHHHHHC
Confidence 488899988885 499999999999863
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.86 E-value=3.1e+02 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCc-------CCcchhhhhhhcCCcccccc
Q 028097 21 NFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLA-------MSTGPIAKFFFNCPDNAFQV 78 (214)
Q Consensus 21 ~F~~E~D~v~~d~v~~~v~nf~lv~llAPt~s~~~~~~-------~~~g~l~~~~~~lP~n~Fq~ 78 (214)
-.++-+=+++.+++.+.+.=..+.++.-|-........ ......+-+..-.|+|.|+.
T Consensus 70 l~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~a 134 (405)
T d2nwwa1 70 VGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGA 134 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhccccccccchHHHHHHHhccCCHHHH
Confidence 34789999999999999999999999999765432211 11122344456779999975
No 7
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.71 E-value=1.8e+02 Score=20.67 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHhhcchhhhhHHHHHHHHHHHHHHH
Q 028097 10 KTAAELERRRENFSKELDFVFADVVMAIIA 39 (214)
Q Consensus 10 ~~~aE~~~R~~~F~~E~D~v~~d~v~~~v~ 39 (214)
-+++||++ -+++++|--=-.--+++++.+
T Consensus 43 ~VL~~ME~-~P~WL~Es~~~~Q~~iV~SL~ 71 (132)
T d2au5a1 43 IVLAEMEK-DPNWLEEAAGGMQGVIVQSLL 71 (132)
T ss_dssp HHHHHHHH-CTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-CchHHHHHHHHhHHHHHHHHh
Confidence 46889997 778888854444444555544
No 8
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=75 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=16.7
Q ss_pred hhhhhcCCcc-ccccccCCCCCC
Q 028097 65 AKFFFNCPDN-AFQVAFTGTSYS 86 (214)
Q Consensus 65 ~~~~~~lP~n-~Fq~~~~g~~fs 86 (214)
..+|+.||+| .|-.-.||..|+
T Consensus 57 EeYF~tLp~nT~lm~L~~ge~W~ 79 (81)
T d1ibxa_ 57 EDYFPSVPDNAELVLLTLGQAWQ 79 (81)
T ss_dssp SSSCSSCCSCCCEEEECSSSCCC
T ss_pred HHHHhcCCCCcEEEEECCCCccC
Confidence 4688999997 777767777774
No 9
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.22 E-value=75 Score=22.28 Aligned_cols=9 Identities=44% Similarity=0.501 Sum_probs=7.0
Q ss_pred hhhhhHHHH
Q 028097 20 ENFSKELDF 28 (214)
Q Consensus 20 ~~F~~E~D~ 28 (214)
|+||+||..
T Consensus 64 driW~EL~~ 72 (102)
T d1k0ia2 64 ERFWTELKA 72 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 678998864
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.91 E-value=1.2e+02 Score=18.83 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=17.8
Q ss_pred ccchhHHHHHHHHHhhcchhhh
Q 028097 2 ECGVGVFTKTAAELERRRENFS 23 (214)
Q Consensus 2 E~~i~i~~~~~aE~~~R~~~F~ 23 (214)
|.++|.+...+||--.+|+.++
T Consensus 26 e~~fD~~~d~~we~~NkGKlWk 47 (55)
T d3cx5i1 26 QTVFDTAITSWYENHNKGKLWK 47 (55)
T ss_dssp HHHHHHHHHHHHHHHTTTTSHH
T ss_pred HHHHHHHHHHHHHhccCcccHH
Confidence 7788999999999998775543
Done!