BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028098
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
KD GGG E + TLFV GLP D RE+ +FRPF GY E L+ S+
Sbjct: 6 KDTEHTNGGGNVE-----EEVRTLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQ 59
Query: 172 PGGDPLILCFVDFVSPAHAATAMDALQ 198
P G FV F S A A A +AL
Sbjct: 60 PVG------FVTFDSRAGAEAAKNALN 80
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 119 GGGR-------SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
GGG+ SE L + TLFV GLP D RE+ +FRPF GY E L+ S+
Sbjct: 3 GGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQ 61
Query: 172 PGGDPLILCFVDFVSPAHAATAMDALQ 198
P G FV F S + A A +AL
Sbjct: 62 PVG------FVSFDSRSEAEAAKNALN 82
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQ 198
F S + A A +AL
Sbjct: 67 SFDSRSEAEAAKNALN 82
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ SR P G FV F S A A A
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG------FVIFDSRAGAEAA 78
Query: 194 MDALQ 198
+AL
Sbjct: 79 KNALN 83
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ +R P G FV F S A A A
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTARQPVG------FVIFDSRAGAEAA 84
Query: 194 MDALQ 198
+AL
Sbjct: 85 KNALN 89
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 17/98 (17%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198
EVR++ + PG + FV++ + + AM ALQ
Sbjct: 186 EVRMIEAK---PG-----IAFVEYEDDSQSMVAMQALQ 215
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 17/98 (17%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198
EVR++ + PG + FV++ + + AM ALQ
Sbjct: 186 EVRMIEAK---PG-----IAFVEYEDDSQSMVAMQALQ 215
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F + A A A
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDNRAGAEAA 73
Query: 194 MDALQ 198
+AL
Sbjct: 74 KNALN 78
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 117 GLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDP 176
G+ E P PP+ + LFV+ LP + + + +F + G+KEVR++ + PG
Sbjct: 163 GMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK---PG--- 214
Query: 177 LILCFVDFVSPAHAATAMDALQ 198
+ FV+F + AM LQ
Sbjct: 215 --IAFVEFADEMQSTVAMQGLQ 234
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ TLFVE LP C ++ +F F G+KEV +V ES+ + F++F
Sbjct: 164 PPN--KTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV--ESKKG------IAFIEFEDE 213
Query: 188 AHAATAMDALQ 198
+ AM LQ
Sbjct: 214 IKSGFAMTNLQ 224
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 148 PPNY--ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFEND 197
Query: 188 AHAATAMDALQ 198
A A DALQ
Sbjct: 198 GQAGAARDALQ 208
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV +RH + FV+F +
Sbjct: 139 PPN--QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP--NRHD------IAFVEFTTE 188
Query: 188 AHAATAMDALQ 198
+ A +ALQ
Sbjct: 189 LQSNAAKEALQ 199
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 124 EVP-LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
+VP PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV
Sbjct: 143 QVPDYPPN--YILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVP--GRHD------IAFV 192
Query: 183 DFVSPAHAATAMDALQ 198
+F + A A DALQ
Sbjct: 193 EFENDGQAGAARDALQ 208
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQ 198
A A DALQ
Sbjct: 255 VQAGAARDALQ 265
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQ 198
A A DALQ
Sbjct: 255 VQAGAARDALQ 265
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQ 198
A A DALQ
Sbjct: 255 VQAGAARDALQ 265
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 210 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 259
Query: 188 AHAATAMDALQ 198
A A DALQ
Sbjct: 260 VQAGAARDALQ 270
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA- 193
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A
Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 858
Query: 194 --MDALQVQSKVV 204
MD + ++ V+
Sbjct: 859 MKMDGMTIRENVI 871
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+ V+ LP + +R++V +F F K VR+ K + G FV+FV P A AM
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFVLPKEAENAM 795
Query: 195 DALQ 198
D LQ
Sbjct: 796 DQLQ 799
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQ 198
A A ++LQ
Sbjct: 255 VQAGAARESLQ 265
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS 186
+PP+ + LF++ LP + + + +F + G+KE+R++ + PG + FV++
Sbjct: 154 MPPN--NILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAK---PG-----IAFVEYED 203
Query: 187 PAHAATAMDALQ 198
A+ AM LQ
Sbjct: 204 DVQASIAMQPLQ 215
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA- 193
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A
Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 876
Query: 194 --MDALQVQSKVV 204
MD + ++ V+
Sbjct: 877 MKMDGMTIKENVI 889
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS 186
+PP+ + LF+ LP + + + +F + G+KE+R++ + PG + FV++
Sbjct: 151 MPPN--NILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAK---PG-----IAFVEYED 200
Query: 187 PAHAATAMDALQ 198
++ AM ALQ
Sbjct: 201 DVQSSMAMQALQ 212
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 38.5 bits (88), Expect = 0.032, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191
S + V+ LP + +R++V +F F K VR+ K + G FV+F+ P A
Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAE 817
Query: 192 TAMDALQ 198
AMD L
Sbjct: 818 NAMDQLH 824
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 38.5 bits (88), Expect = 0.033, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA- 193
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 858
Query: 194 --MDALQVQSKVV 204
MD + ++ ++
Sbjct: 859 MKMDGMTIKENII 871
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+ V+ LP + +R++V +F F K VR+ K + G FV+F+ P A AM
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAENAM 809
Query: 195 DALQ 198
D LQ
Sbjct: 810 DQLQ 813
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
V+ LP + +R++V +F F K VR+ K + G FV+F+ P+ A AMD
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPSEAENAMDQ 771
Query: 197 LQ 198
LQ
Sbjct: 772 LQ 773
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 97 PRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPF 156
PR G G P P G GGRS D ++L V L DC + ++ F F
Sbjct: 11 PRGYGRRGRSPSPR------GRYGGRSR-----DLPTSLLVRNLRHDCRQEDLRKSFEQF 59
Query: 157 VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197
K++ L + GDP FV F+ PA AA A +
Sbjct: 60 GPVKDIYLPRD---YYTGDPRGFGFVQFMDPADAADAKHHM 97
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+T++V LP S E+ +F VGYK + +K G P +CFV+F + +A
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTK-----GNGP--MCFVEFENIPYAME 478
Query: 193 AMDALQ 198
A+ LQ
Sbjct: 479 ALKNLQ 484
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191
++ LFV+ LP + + + +F + G+KEVR+V + PG + FV++ A
Sbjct: 178 NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK---PG-----IAFVEYGDEGQAT 229
Query: 192 TAMDALQ 198
AM+ LQ
Sbjct: 230 AAMNHLQ 236
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191
++ LFV+ LP + + + +F + G+KEVR+V + PG + FV++ A
Sbjct: 178 NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK---PG-----IAFVEYGDEGQAT 229
Query: 192 TAMDALQ 198
AM+ LQ
Sbjct: 230 AAMNHLQ 236
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 37.4 bits (85), Expect = 0.080, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+FV L CS+ E+ +F PF K+VRLV K ++ G + +V+F P A A+
Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKG----IAYVEFEKPGEAQRAV 781
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168
P +++ GG+ P SS + ++ LP + + +E+ +F + + VR+ K
Sbjct: 776 PENSKQSIKSNGGQPNKP-----SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK- 829
Query: 169 SRHPGGDPLILCFVDFVSPAHAATAMDAL 197
P G FV+F++ A AM+AL
Sbjct: 830 ---PNGGHRGFGFVEFLTEEEAKNAMEAL 855
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL-VSKESRHPGGDPLILCFVDFVSPAHA 190
S LF+ LP S E+ F F K+V + + K+++ G L FV F PAHA
Sbjct: 313 SGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKG----LAFVSFSDPAHA 368
Query: 191 ATA 193
A
Sbjct: 369 LAA 371
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190
+++ LFV P D E+ IF PF KEV++++ FV+F A
Sbjct: 123 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG-----------FAFVEFEEAESA 171
Query: 191 ATAMDALQVQSKVVAP 206
A A++ + +S P
Sbjct: 172 AKAIEEVHGKSFANQP 187
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 111 AKDRALGL---GGGRSEVPLPPDASS-----TLFVEGLPSDCSRREVAHIFRPFVGYKEV 162
A D AL L GG R+++P+ P+ T+FV LP C+++++ F+ + + V
Sbjct: 159 ALDVALSLAKDGGQRTKIPVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESV 218
Query: 163 RLVS 166
R S
Sbjct: 219 RFRS 222
>sp|Q6P0B1|CELF2_DANRE CUGBP Elav-like family member 2 OS=Danio rerio GN=celf2 PE=2 SV=1
Length = 514
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188
PDA +FV +P S +E+ +F P+ ++ ++ S++P CFV F +
Sbjct: 41 PDAIK-MFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGC-CFVTFYTRK 98
Query: 189 HAATAMDAL 197
A A +AL
Sbjct: 99 AALEAQNAL 107
>sp|Q5F3T7|CELF1_CHICK CUGBP Elav-like family member 1 OS=Gallus gallus GN=CELF1 PE=1 SV=2
Length = 489
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
LF+ + C+ ++ +F PF +E R++ R P G FV F + A A TA+
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRIL----RGPDGLSRGCAFVTFTTRAMAQTAI 165
Query: 195 DAL 197
A+
Sbjct: 166 KAM 168
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP +TL+V LPSD + +E+ +F G++ + +K + G +CFV+F
Sbjct: 535 PP--CNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDV 592
Query: 188 AHAATAMDAL 197
+ A A+ L
Sbjct: 593 SFATRALAEL 602
>sp|Q7TSY6|CELF4_MOUSE CUGBP Elav-like family member 4 OS=Mus musculus GN=Celf4 PE=1 SV=2
Length = 486
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQ 198
FV + S A A A++AL
Sbjct: 195 AFVKYSSHAEAQAAINALH 213
>sp|Q5NVC8|CELF4_PONAB CUGBP Elav-like family member 4 OS=Pongo abelii GN=CELF4 PE=2 SV=2
Length = 486
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQ 198
FV + S A A A++AL
Sbjct: 195 AFVKYSSHAEAQAAINALH 213
>sp|Q9BZC1|CELF4_HUMAN CUGBP Elav-like family member 4 OS=Homo sapiens GN=CELF4 PE=1 SV=1
Length = 486
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQ 198
FV + S A A A++AL
Sbjct: 195 AFVKYSSHAEAQAAINALH 213
>sp|Q792H5|CELF2_RAT CUGBP Elav-like family member 2 OS=Rattus norvegicus GN=Celf2 PE=2
SV=1
Length = 508
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188
PDA +FV +P S +E+ +F P+ ++ ++ S++P CFV F +
Sbjct: 37 PDAIK-MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC-CFVTFYTRK 94
Query: 189 HAATAMDAL 197
A A +AL
Sbjct: 95 AALEAQNAL 103
>sp|Q9Z0H4|CELF2_MOUSE CUGBP Elav-like family member 2 OS=Mus musculus GN=Celf2 PE=1 SV=1
Length = 508
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188
PDA +FV +P S +E+ +F P+ ++ ++ S++P CFV F +
Sbjct: 37 PDAIK-MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC-CFVTFYTRK 94
Query: 189 HAATAMDAL 197
A A +AL
Sbjct: 95 AALEAQNAL 103
>sp|Q5R8Y8|CELF2_PONAB CUGBP Elav-like family member 2 OS=Pongo abelii GN=CELF2 PE=2 SV=2
Length = 508
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188
PDA +FV +P S +E+ +F P+ ++ ++ S++P CFV F +
Sbjct: 37 PDAIK-MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC-CFVTFYTRK 94
Query: 189 HAATAMDAL 197
A A +AL
Sbjct: 95 AALEAQNAL 103
>sp|O95319|CELF2_HUMAN CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1
Length = 508
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188
PDA +FV +P S +E+ +F P+ ++ ++ S++P CFV F +
Sbjct: 37 PDAIK-MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC-CFVTFYTRK 94
Query: 189 HAATAMDAL 197
A A +AL
Sbjct: 95 AALEAQNAL 103
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHP--GGDPLILCFVDFVSPAHAA 191
+++V LPS C ++ +F PF + + ++S++ P + F+ F + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 192 TAMDALQ 198
A+ +L
Sbjct: 81 NAIASLN 87
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+ + ++ LP ++++V +F + + VR+ K R G F DFVS A
Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARG----FGFADFVSAREAEN 757
Query: 193 AMDALQ 198
AMDAL+
Sbjct: 758 AMDALK 763
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL-VSKESRHPGGDPLI 178
R+ + LPP+ + L+V LP + E+ IF F +++R+ + E+R G +
Sbjct: 2 NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETR---GTAFV 58
Query: 179 LCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSGS 213
+ + D +A + V ++ + YQS
Sbjct: 59 V-YEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNK 92
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 110 SAKDRALGL---GGGRSEVPLPPDASS-----TLFVEGLPSDCSRREVAHIFRPFVGYKE 161
A D AL L G R++VPL P+ T+FV LP C+++++ F+ + +
Sbjct: 152 EALDVALSLNEDGRQRTKVPLNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVES 211
Query: 162 VRLVS 166
VR S
Sbjct: 212 VRFRS 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,918,862
Number of Sequences: 539616
Number of extensions: 4034069
Number of successful extensions: 8884
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 8819
Number of HSP's gapped (non-prelim): 113
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)