Query 028098
Match_columns 214
No_of_seqs 269 out of 1426
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 5.3E-18 1.2E-22 136.5 9.9 80 131-213 33-112 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 2.1E-16 4.6E-21 143.6 15.1 79 131-212 106-184 (346)
3 KOG0148 Apoptosis-promoting RN 99.7 2.1E-17 4.5E-22 143.8 6.5 165 33-214 69-237 (321)
4 TIGR01659 sex-lethal sex-letha 99.7 2.1E-17 4.6E-22 150.1 5.3 153 33-211 114-271 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.4E-16 2.9E-21 142.5 10.2 78 132-212 269-346 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.7E-21 142.7 9.1 79 131-212 2-80 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 1.9E-16 4.1E-21 109.2 7.9 70 135-208 1-70 (70)
8 TIGR01645 half-pint poly-U bin 99.6 1.3E-15 2.7E-20 146.8 6.5 153 48-212 125-281 (612)
9 KOG0121 Nuclear cap-binding pr 99.6 2.6E-15 5.7E-20 118.3 6.4 78 131-211 35-112 (153)
10 PF14259 RRM_6: RNA recognitio 99.5 5.5E-14 1.2E-18 98.0 8.5 69 135-207 1-69 (70)
11 smart00362 RRM_2 RNA recogniti 99.5 7.3E-14 1.6E-18 94.5 8.4 72 134-210 1-72 (72)
12 TIGR01645 half-pint poly-U bin 99.5 3.7E-14 8E-19 136.7 9.5 78 131-211 106-183 (612)
13 PLN03120 nucleic acid binding 99.5 3.6E-14 7.9E-19 123.9 8.5 74 132-212 4-77 (260)
14 TIGR01628 PABP-1234 polyadenyl 99.5 5E-14 1.1E-18 134.3 9.2 76 134-212 2-77 (562)
15 TIGR01622 SF-CC1 splicing fact 99.5 5.8E-14 1.3E-18 130.1 9.1 78 132-212 186-263 (457)
16 KOG0114 Predicted RNA-binding 99.5 1.2E-13 2.6E-18 105.5 8.3 79 124-208 10-88 (124)
17 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.2E-18 128.5 9.5 77 131-211 88-164 (457)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.1E-13 2.4E-18 129.7 9.5 79 130-211 293-371 (509)
19 TIGR01648 hnRNP-R-Q heterogene 99.5 1.3E-13 2.8E-18 132.4 10.2 76 129-208 55-131 (578)
20 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.3E-18 113.6 8.8 78 132-212 115-192 (306)
21 PLN03121 nucleic acid binding 99.5 1.5E-13 3.2E-18 118.7 8.4 73 132-211 5-77 (243)
22 TIGR01628 PABP-1234 polyadenyl 99.4 2.5E-13 5.4E-18 129.5 9.5 78 131-212 284-361 (562)
23 KOG0122 Translation initiation 99.4 1.9E-13 4.2E-18 117.6 7.6 78 131-211 188-265 (270)
24 KOG0149 Predicted RNA-binding 99.4 1.5E-13 3.2E-18 117.7 6.6 61 132-195 12-72 (247)
25 smart00360 RRM RNA recognition 99.4 6.6E-13 1.4E-17 89.3 7.7 70 137-209 1-70 (71)
26 KOG0126 Predicted RNA-binding 99.4 2.4E-14 5.3E-19 118.7 -0.4 75 132-209 35-109 (219)
27 PLN03213 repressor of silencin 99.4 5.8E-13 1.3E-17 124.1 8.2 75 132-213 10-86 (759)
28 KOG0107 Alternative splicing f 99.4 4.3E-13 9.4E-18 110.6 6.2 70 132-209 10-79 (195)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.2E-13 2E-17 124.1 8.8 72 132-212 2-75 (481)
30 KOG0113 U1 small nuclear ribon 99.4 1.3E-12 2.7E-17 115.3 8.5 77 130-209 99-175 (335)
31 KOG0131 Splicing factor 3b, su 99.4 4.4E-13 9.6E-18 111.1 4.8 81 130-213 7-87 (203)
32 KOG0125 Ataxin 2-binding prote 99.4 1.4E-12 2.9E-17 116.4 7.7 77 130-211 94-170 (376)
33 KOG0145 RNA-binding protein EL 99.4 2.2E-13 4.8E-18 118.5 2.1 162 29-213 36-207 (360)
34 TIGR01648 hnRNP-R-Q heterogene 99.3 2E-12 4.3E-17 124.4 8.4 71 131-212 232-304 (578)
35 cd00590 RRM RRM (RNA recogniti 99.3 6.6E-12 1.4E-16 85.2 8.6 73 134-210 1-73 (74)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 3.7E-12 8E-17 120.0 9.3 73 131-211 274-347 (481)
37 KOG0144 RNA-binding protein CU 99.3 1.8E-12 3.9E-17 119.0 4.1 79 132-214 124-205 (510)
38 KOG0108 mRNA cleavage and poly 99.3 5.6E-12 1.2E-16 117.6 7.2 77 133-212 19-95 (435)
39 KOG0148 Apoptosis-promoting RN 99.3 6.1E-12 1.3E-16 109.9 6.8 78 132-212 62-139 (321)
40 KOG0144 RNA-binding protein CU 99.3 9.1E-12 2E-16 114.4 7.8 69 131-202 33-101 (510)
41 KOG0147 Transcriptional coacti 99.3 3.7E-12 8E-17 119.5 5.0 145 51-211 203-354 (549)
42 KOG4207 Predicted splicing fac 99.3 7.7E-12 1.7E-16 105.8 6.1 79 131-212 12-90 (256)
43 KOG0117 Heterogeneous nuclear 99.2 3.5E-11 7.6E-16 110.9 9.2 70 131-203 82-151 (506)
44 KOG0145 RNA-binding protein EL 99.2 1.8E-11 3.8E-16 106.8 6.9 79 131-212 40-118 (360)
45 KOG0130 RNA-binding protein RB 99.2 1.8E-11 3.8E-16 97.7 6.2 78 131-211 71-148 (170)
46 KOG4206 Spliceosomal protein s 99.2 3.6E-11 7.7E-16 102.5 7.6 76 132-213 9-88 (221)
47 KOG0105 Alternative splicing f 99.2 1.8E-11 3.9E-16 102.1 4.9 73 132-210 6-78 (241)
48 KOG0123 Polyadenylate-binding 99.2 1.8E-11 4E-16 112.3 4.8 134 36-209 8-147 (369)
49 KOG0117 Heterogeneous nuclear 99.2 3.2E-11 7E-16 111.2 6.1 67 132-209 259-325 (506)
50 KOG0111 Cyclophilin-type pepti 99.2 1.4E-11 3.1E-16 105.1 3.1 76 131-211 9-86 (298)
51 KOG0127 Nucleolar protein fibr 99.2 5.5E-11 1.2E-15 111.9 7.3 170 34-212 13-193 (678)
52 TIGR01642 U2AF_lg U2 snRNP aux 99.2 8.2E-11 1.8E-15 110.4 8.5 71 131-211 174-256 (509)
53 KOG0109 RNA-binding protein LA 99.1 3.2E-11 6.9E-16 106.3 3.8 67 133-210 3-69 (346)
54 KOG4212 RNA-binding protein hn 99.1 1.7E-10 3.7E-15 106.4 8.5 76 132-211 44-120 (608)
55 KOG0127 Nucleolar protein fibr 99.1 1.3E-10 2.7E-15 109.5 7.8 63 132-197 292-354 (678)
56 KOG0146 RNA-binding protein ET 99.1 7.4E-11 1.6E-15 103.2 5.7 67 132-202 19-85 (371)
57 PF13893 RRM_5: RNA recognitio 99.1 2.8E-10 6E-15 76.5 6.5 55 149-211 1-55 (56)
58 smart00361 RRM_1 RNA recogniti 99.1 3.1E-10 6.7E-15 80.1 7.0 62 146-208 2-68 (70)
59 KOG4212 RNA-binding protein hn 99.0 9.9E-10 2.2E-14 101.5 9.3 71 131-209 535-605 (608)
60 KOG0132 RNA polymerase II C-te 99.0 4.4E-10 9.6E-15 109.2 6.1 74 131-213 420-493 (894)
61 KOG0109 RNA-binding protein LA 99.0 2.7E-10 6E-15 100.5 4.0 69 131-210 77-145 (346)
62 KOG0146 RNA-binding protein ET 99.0 7.7E-10 1.7E-14 96.9 5.8 77 131-210 284-360 (371)
63 KOG4208 Nucleolar RNA-binding 99.0 1.3E-09 2.8E-14 92.0 6.5 74 132-208 49-123 (214)
64 KOG0415 Predicted peptidyl pro 98.9 1.3E-09 2.9E-14 98.4 6.5 75 132-209 239-313 (479)
65 KOG0124 Polypyrimidine tract-b 98.9 1.3E-09 2.9E-14 98.8 5.1 75 132-209 113-187 (544)
66 KOG0533 RRM motif-containing p 98.9 2.6E-09 5.7E-14 92.9 6.6 76 132-211 83-158 (243)
67 KOG0110 RNA-binding protein (R 98.9 1.3E-09 2.7E-14 105.2 4.8 79 132-213 613-691 (725)
68 KOG0110 RNA-binding protein (R 98.9 2.4E-09 5.2E-14 103.3 6.7 78 133-210 516-593 (725)
69 KOG0131 Splicing factor 3b, su 98.9 1.8E-09 4E-14 89.7 4.5 76 132-210 96-172 (203)
70 KOG0153 Predicted RNA-binding 98.9 3.9E-09 8.5E-14 95.0 6.7 75 131-214 227-302 (377)
71 KOG4454 RNA binding protein (R 98.8 2.2E-09 4.7E-14 91.7 2.1 76 131-211 8-83 (267)
72 KOG0123 Polyadenylate-binding 98.8 1.3E-08 2.8E-13 93.6 7.2 70 133-211 2-71 (369)
73 KOG0151 Predicted splicing reg 98.8 1.8E-08 3.9E-13 97.5 7.9 80 132-214 174-256 (877)
74 KOG4205 RNA-binding protein mu 98.7 1.6E-08 3.4E-13 91.0 4.1 71 131-204 5-79 (311)
75 KOG1457 RNA binding protein (c 98.6 1.4E-07 3.1E-12 81.0 8.6 73 129-204 31-104 (284)
76 KOG4660 Protein Mei2, essentia 98.6 3.5E-08 7.5E-13 93.3 5.2 70 131-208 74-143 (549)
77 KOG0226 RNA-binding proteins [ 98.6 7.5E-08 1.6E-12 83.8 6.0 79 130-211 188-266 (290)
78 KOG4206 Spliceosomal protein s 98.5 2.9E-07 6.3E-12 78.7 7.7 75 131-213 145-220 (221)
79 KOG0124 Polypyrimidine tract-b 98.5 8.5E-08 1.8E-12 87.3 4.1 167 23-208 104-283 (544)
80 KOG4205 RNA-binding protein mu 98.5 2.1E-07 4.5E-12 83.8 6.5 150 35-205 15-171 (311)
81 KOG1457 RNA binding protein (c 98.5 9.6E-08 2.1E-12 82.0 4.1 66 131-203 209-274 (284)
82 KOG4209 Splicing factor RNPS1, 98.5 1.7E-07 3.6E-12 81.2 5.5 74 132-209 101-174 (231)
83 KOG0116 RasGAP SH3 binding pro 98.4 2.9E-07 6.3E-12 85.8 5.5 72 131-205 287-362 (419)
84 KOG1548 Transcription elongati 98.4 5E-07 1.1E-11 81.5 6.7 79 129-211 131-217 (382)
85 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.9E-07 8.4E-12 86.9 5.6 76 132-212 405-482 (940)
86 KOG0106 Alternative splicing f 98.4 2.5E-07 5.3E-12 79.3 3.1 62 134-206 3-64 (216)
87 KOG1995 Conserved Zn-finger pr 98.1 9.6E-06 2.1E-10 73.5 8.2 78 131-211 65-150 (351)
88 KOG0147 Transcriptional coacti 98.1 8.3E-07 1.8E-11 84.0 0.9 77 131-211 178-254 (549)
89 KOG0120 Splicing factor U2AF, 98.0 4.1E-06 8.9E-11 79.5 3.7 79 129-210 286-364 (500)
90 PF08777 RRM_3: RNA binding mo 98.0 2.3E-05 5.1E-10 60.0 6.3 59 133-200 2-60 (105)
91 KOG4211 Splicing factor hnRNP- 97.9 2.1E-05 4.6E-10 73.9 7.0 59 132-196 10-68 (510)
92 PF04059 RRM_2: RNA recognitio 97.9 5.2E-05 1.1E-09 57.4 7.8 69 133-204 2-72 (97)
93 KOG4210 Nuclear localization s 97.9 9.9E-06 2.1E-10 72.2 3.3 77 132-212 184-261 (285)
94 KOG0106 Alternative splicing f 97.8 1E-05 2.2E-10 69.4 2.5 68 131-209 98-165 (216)
95 KOG1190 Polypyrimidine tract-b 97.7 7.7E-05 1.7E-09 69.0 7.0 71 132-210 297-368 (492)
96 KOG4307 RNA binding protein RB 97.7 0.0003 6.5E-09 68.8 10.2 73 133-209 868-941 (944)
97 KOG1855 Predicted RNA-binding 97.7 7.4E-05 1.6E-09 69.4 5.8 69 131-199 230-308 (484)
98 KOG4211 Splicing factor hnRNP- 97.6 0.00021 4.6E-09 67.3 8.5 61 132-196 103-164 (510)
99 PF11608 Limkain-b1: Limkain b 97.5 0.00041 8.9E-09 51.4 6.9 66 133-211 3-73 (90)
100 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00031 6.7E-09 47.3 5.0 52 133-194 2-53 (53)
101 KOG1190 Polypyrimidine tract-b 97.4 9.7E-05 2.1E-09 68.3 3.2 53 131-192 27-79 (492)
102 KOG2314 Translation initiation 97.4 0.00024 5.2E-09 68.0 5.5 70 132-205 58-133 (698)
103 KOG0128 RNA-binding protein SA 97.3 9.5E-05 2E-09 73.4 1.9 76 132-211 736-811 (881)
104 KOG0129 Predicted RNA-binding 97.3 0.00061 1.3E-08 64.5 7.1 65 131-196 258-325 (520)
105 KOG0129 Predicted RNA-binding 97.2 0.0011 2.3E-08 62.9 7.4 66 127-196 365-432 (520)
106 KOG0105 Alternative splicing f 97.1 0.0049 1.1E-07 52.1 9.5 61 132-202 115-175 (241)
107 KOG1365 RNA-binding protein Fu 97.1 0.003 6.6E-08 58.4 8.8 61 132-196 161-225 (508)
108 COG5175 MOT2 Transcriptional r 97.0 0.002 4.3E-08 58.7 6.6 82 132-214 114-202 (480)
109 KOG1456 Heterogeneous nuclear 97.0 0.0026 5.7E-08 58.6 7.4 58 129-195 28-85 (494)
110 PF08675 RNA_bind: RNA binding 96.9 0.0053 1.1E-07 45.4 7.5 55 132-198 9-63 (87)
111 KOG4849 mRNA cleavage factor I 96.6 0.0017 3.8E-08 59.3 3.3 71 132-205 80-152 (498)
112 KOG4676 Splicing factor, argin 96.5 0.0026 5.7E-08 58.8 3.6 71 134-205 9-79 (479)
113 KOG1456 Heterogeneous nuclear 96.4 0.07 1.5E-06 49.5 12.6 71 131-209 286-357 (494)
114 PF10309 DUF2414: Protein of u 96.4 0.012 2.5E-07 41.2 6.0 54 133-197 6-62 (62)
115 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.012 2.6E-07 44.8 6.0 63 132-205 6-81 (100)
116 PF08952 DUF1866: Domain of un 96.2 0.012 2.7E-07 47.6 5.9 51 148-210 52-102 (146)
117 KOG0120 Splicing factor U2AF, 96.0 0.016 3.4E-07 55.5 6.6 58 149-207 426-484 (500)
118 KOG3152 TBP-binding protein, a 96.0 0.0048 1E-07 54.2 2.8 74 132-205 74-156 (278)
119 KOG2193 IGF-II mRNA-binding pr 96.0 0.0064 1.4E-07 56.9 3.7 68 133-209 2-70 (584)
120 KOG1548 Transcription elongati 95.9 0.02 4.3E-07 52.3 6.0 70 131-207 264-344 (382)
121 KOG1365 RNA-binding protein Fu 95.7 0.017 3.7E-07 53.5 5.2 65 132-200 280-347 (508)
122 KOG0112 Large RNA-binding prot 95.6 0.0028 6.1E-08 63.6 -0.4 77 131-212 371-448 (975)
123 KOG0128 RNA-binding protein SA 95.5 0.001 2.3E-08 66.2 -3.9 65 132-199 667-731 (881)
124 KOG0112 Large RNA-binding prot 95.3 0.021 4.5E-07 57.6 4.6 67 131-206 454-520 (975)
125 KOG0115 RNA-binding protein p5 95.3 0.019 4.1E-07 50.5 3.8 62 132-197 31-92 (275)
126 KOG2202 U2 snRNP splicing fact 95.3 0.0068 1.5E-07 53.1 0.9 57 149-209 85-142 (260)
127 KOG2416 Acinus (induces apopto 95.0 0.021 4.6E-07 55.4 3.4 64 130-202 442-506 (718)
128 KOG2591 c-Mpl binding protein, 94.4 0.076 1.7E-06 51.3 5.6 65 131-205 174-247 (684)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 94.3 0.063 1.4E-06 44.6 4.3 72 132-205 7-83 (176)
130 KOG2068 MOT2 transcription fac 94.0 0.046 1E-06 49.6 3.0 81 132-214 77-162 (327)
131 KOG4307 RNA binding protein RB 93.9 0.054 1.2E-06 53.6 3.5 67 126-196 428-495 (944)
132 PF07576 BRAP2: BRCA1-associat 93.8 0.67 1.4E-05 35.8 8.9 67 132-203 13-80 (110)
133 KOG4574 RNA-binding protein (c 93.4 0.035 7.5E-07 55.8 1.4 72 134-214 300-373 (1007)
134 KOG2253 U1 snRNP complex, subu 92.1 0.3 6.4E-06 48.0 5.7 59 132-202 40-98 (668)
135 KOG1996 mRNA splicing factor [ 90.8 0.59 1.3E-05 42.2 5.8 61 146-208 300-360 (378)
136 PF04847 Calcipressin: Calcipr 90.2 0.48 1E-05 39.8 4.5 59 145-212 8-68 (184)
137 KOG4210 Nuclear localization s 89.8 0.34 7.4E-06 43.3 3.5 73 131-206 87-159 (285)
138 PF15023 DUF4523: Protein of u 89.5 1 2.2E-05 36.8 5.6 58 132-199 86-147 (166)
139 KOG0804 Cytoplasmic Zn-finger 88.4 1.4 3E-05 41.8 6.5 67 132-203 74-141 (493)
140 PF11767 SET_assoc: Histone ly 87.7 2.4 5.2E-05 29.8 5.9 54 143-208 11-64 (66)
141 PF03880 DbpA: DbpA RNA bindin 86.6 2.4 5.2E-05 29.9 5.6 57 142-210 11-72 (74)
142 KOG0226 RNA-binding proteins [ 84.6 0.12 2.7E-06 45.6 -2.3 69 27-99 188-262 (290)
143 KOG2135 Proteins containing th 82.8 0.69 1.5E-05 44.1 1.6 71 132-212 372-443 (526)
144 KOG4285 Mitotic phosphoprotein 81.2 2.3 5E-05 38.5 4.3 60 133-203 198-257 (350)
145 KOG4660 Protein Mei2, essentia 79.2 3.5 7.6E-05 40.0 5.1 42 156-201 413-455 (549)
146 KOG2318 Uncharacterized conser 77.6 6.4 0.00014 38.6 6.3 78 130-207 172-298 (650)
147 KOG4454 RNA binding protein (R 72.6 1.1 2.5E-05 38.9 -0.1 74 132-209 80-157 (267)
148 KOG4676 Splicing factor, argin 69.4 1.1 2.3E-05 42.0 -1.0 65 132-204 151-215 (479)
149 PF03468 XS: XS domain; Inter 65.3 5.3 0.00011 31.0 2.3 51 134-190 10-69 (116)
150 COG0724 RNA-binding proteins ( 64.1 14 0.00031 29.8 4.9 164 33-204 122-294 (306)
151 KOG4483 Uncharacterized conser 63.8 20 0.00044 33.9 6.1 65 132-207 391-456 (528)
152 KOG2295 C2H2 Zn-finger protein 61.9 1.3 2.9E-05 43.0 -1.9 72 132-207 231-303 (648)
153 KOG2891 Surface glycoprotein [ 59.0 7.9 0.00017 35.0 2.5 75 128-202 145-247 (445)
154 KOG2193 IGF-II mRNA-binding pr 56.1 0.71 1.5E-05 43.6 -4.7 71 131-207 79-149 (584)
155 KOG2187 tRNA uracil-5-methyltr 46.5 20 0.00044 34.8 3.3 71 137-214 30-100 (534)
156 KOG4008 rRNA processing protei 44.4 11 0.00024 33.2 1.0 31 132-162 40-70 (261)
157 PF14893 PNMA: PNMA 40.4 24 0.00052 32.3 2.7 24 132-155 18-41 (331)
158 KOG4410 5-formyltetrahydrofola 37.4 35 0.00076 31.0 3.1 50 132-189 330-379 (396)
159 KOG4019 Calcineurin-mediated s 36.9 19 0.00041 30.4 1.3 65 132-205 10-79 (193)
160 COG5638 Uncharacterized conser 35.0 91 0.002 29.8 5.5 36 130-165 144-184 (622)
161 PF10567 Nab6_mRNP_bdg: RNA-re 30.5 63 0.0014 29.3 3.6 62 132-193 15-80 (309)
162 PF00403 HMA: Heavy-metal-asso 28.5 1.7E+02 0.0037 18.9 6.3 54 134-196 1-58 (62)
163 KOG0156 Cytochrome P450 CYP2 s 28.3 1.2E+02 0.0025 29.2 5.3 68 127-207 27-97 (489)
164 PF11411 DNA_ligase_IV: DNA li 24.6 46 0.001 20.7 1.2 17 142-158 19-35 (36)
165 PRK14548 50S ribosomal protein 22.9 1.7E+02 0.0038 21.4 4.2 56 136-197 24-81 (84)
166 PF08544 GHMP_kinases_C: GHMP 21.9 2.7E+02 0.0058 18.9 5.5 44 147-198 37-80 (85)
167 PF00054 Laminin_G_1: Laminin 21.0 28 0.00061 26.7 -0.3 10 132-141 92-101 (131)
168 KOG1295 Nonsense-mediated deca 20.8 1.4E+02 0.0031 27.9 4.1 74 132-207 7-82 (376)
169 PF11823 DUF3343: Protein of u 20.6 1.1E+02 0.0023 21.2 2.6 24 179-202 3-26 (73)
170 PF07292 NID: Nmi/IFP 35 domai 20.1 68 0.0015 23.8 1.6 22 132-153 52-73 (88)
171 TIGR03636 L23_arch archaeal ri 20.1 2.3E+02 0.005 20.4 4.3 56 135-196 16-73 (77)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=5.3e-18 Score=136.46 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||++++|++|+++|++||.|++|+|+.++.+ |++||||||+|.+.++|++|++.|||..|.+++++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3789999999999999999999999999999999998743 6677899999999999999999999999999999997
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+..
T Consensus 110 ~a~ 112 (144)
T PLN03134 110 PAN 112 (144)
T ss_pred eCC
Confidence 653
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=2.1e-16 Score=143.57 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++||++|+++|++||.|++|+|+.++.+ |+++|||||+|.++++|++||+.|||..|.++++++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~t---g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKT---GYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4789999999999999999999999999999999998743 5677799999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 183 ~a 184 (346)
T TIGR01659 183 YA 184 (346)
T ss_pred cc
Confidence 54
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.1e-17 Score=143.82 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=128.5
Q ss_pred CCCcccccccccccccccCCCCCCCccccchhhhhhccCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 028098 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSG-GQSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (214)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~--~~~~~~-~~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~ 109 (214)
++..+|..-.+++.|-. +--|.|+|+|.+.-+ .-||| |+||.. .++-+|+- +|+|.=+..|.+ +...+.+-+
T Consensus 69 dls~eI~~e~lr~aF~p-FGevS~akvirD~~T--~KsKGYgFVSf~~k~dAEnAI~-~MnGqWlG~R~I-RTNWATRKp 143 (321)
T KOG0148|consen 69 DLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNT--GKSKGYGFVSFPNKEDAENAIQ-QMNGQWLGRRTI-RTNWATRKP 143 (321)
T ss_pred hcchhcchHHHHHHhcc-ccccccceEeecccC--CcccceeEEeccchHHHHHHHH-HhCCeeecccee-eccccccCc
Confidence 89999999999997643 666889999987766 47777 568877 47778998 999998887654 344444322
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHH
Q 028098 110 SA-KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (214)
Q Consensus 110 ~~-~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~ 188 (214)
.. +++...|.- .-....| .+++|||||++.-+||++|++.|++||.|.+||+..++ | |+||.|++.|
T Consensus 144 ~e~n~~~ltfde-V~NQssp--~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~tkE 211 (321)
T KOG0148|consen 144 SEMNGKPLTFDE-VYNQSSP--DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFETKE 211 (321)
T ss_pred cccCCCCccHHH-HhccCCC--CCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEecchh
Confidence 11 111111110 0011222 38999999999999999999999999999999999997 5 9999999999
Q ss_pred HHHHHHHHhCCCeecccccccccCCC
Q 028098 189 HAATAMDALQVQSKVVAPNQYQSGST 214 (214)
Q Consensus 189 ~A~~Al~~LnG~~l~~~P~~~~~~~~ 214 (214)
+|..||..+||..|.+.+.+-.||++
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEecccc
Confidence 99999999999999999999999985
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=2.1e-17 Score=150.12 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=112.4
Q ss_pred CCCcccccccccccccccCCCCCCCccccchhhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 028098 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (214)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~--~~~~~~~-~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~ 109 (214)
.+..+++...+++.|.. +-.|.+++++.+..+ .++++ |+.|.+. ++.+|+. .|+|..+.++.+...- ..
T Consensus 114 nLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~t--g~srGyaFVeF~~~e~A~~Ai~-~LnG~~l~gr~i~V~~-a~--- 185 (346)
T TIGR01659 114 YLPQDMTDRELYALFRT-IGPINTCRIMRDYKT--GYSFGYAFVDFGSEADSQRAIK-NLNGITVRNKRLKVSY-AR--- 185 (346)
T ss_pred CCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCC--CccCcEEEEEEccHHHHHHHHH-HcCCCccCCceeeeec-cc---
Confidence 45667777777776665 334667777653333 24554 6788886 5557887 8999888776543311 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHH
Q 028098 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (214)
Q Consensus 110 ~~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~ 189 (214)
+.. .....++|||+|||.++||++|+++|++||.|++|+|+.++.+ |++||||||+|.++++
T Consensus 186 -------------p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t---g~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 186 -------------PGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT---GTPRGVAFVRFNKREE 247 (346)
T ss_pred -------------ccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC---CccceEEEEEECCHHH
Confidence 000 0112578999999999999999999999999999999998743 6778899999999999
Q ss_pred HHHHHHHhCCCeecc--ccccccc
Q 028098 190 AATAMDALQVQSKVV--APNQYQS 211 (214)
Q Consensus 190 A~~Al~~LnG~~l~~--~P~~~~~ 211 (214)
|++||+.||++.+.+ .|++++.
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEE
Confidence 999999999998866 5776654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.4e-16 Score=142.48 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+.+|||+|||+++++++|+++|++||.|.+|+|+.++.+ |.+||||||+|.+.++|.+|++.|||+.|.++++++.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t---~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT---NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC---CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457999999999999999999999999999999999733 67778999999999999999999999999999999876
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
-
T Consensus 346 ~ 346 (352)
T TIGR01661 346 K 346 (352)
T ss_pred c
Confidence 4
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.3e-16 Score=142.66 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||.+++|++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.++++++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~---g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT---GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC---CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEE
Confidence 3689999999999999999999999999999999998743 6777899999999999999999999999999999886
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 79 ~a 80 (352)
T TIGR01661 79 YA 80 (352)
T ss_pred ee
Confidence 54
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=1.9e-16 Score=109.16 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=64.3
Q ss_pred EEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 135 LfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
|||+|||.++++++|+++|++||.|..+.+..+.. +..+++|||+|.+.++|++|++.|||+.+.+++++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999999732 56677999999999999999999999999988763
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=1.3e-15 Score=146.81 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=105.8
Q ss_pred cccCCCCCCCccccchhhhhh-ccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 028098 48 RGALRGMRDTDSLGASYDRYL-RSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRS 123 (214)
Q Consensus 48 r~~~~~~~~~~~~~~~~dr~~-~~~~--~~~~~~~-~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~~~~~r~~g~~~~~p 123 (214)
+..+..+...+.|.-.+|+.. .++| |..|.+. ++-+++. .|+|..+.++.+...-... .+... ......
T Consensus 125 r~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~-~lnG~~i~GR~IkV~rp~~---~p~a~--~~~~~~- 197 (612)
T TIGR01645 125 RRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGGRNIKVGRPSN---MPQAQ--PIIDMV- 197 (612)
T ss_pred HHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHH-hcCCeEEecceeeeccccc---ccccc--cccccc-
Confidence 333343444444444456443 5665 5678776 4446776 8899888877654321000 00000 000000
Q ss_pred CCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 124 ~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
.......++|||+|||.++++++|+++|+.||.|++|+|+.++.+ |++||||||+|.+.++|.+|++.|||+.|.
T Consensus 198 --~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t---gksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 198 --QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred --cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 001123579999999999999999999999999999999998743 567779999999999999999999999999
Q ss_pred ccccccccC
Q 028098 204 VAPNQYQSG 212 (214)
Q Consensus 204 ~~P~~~~~~ 212 (214)
++.+++.+.
T Consensus 273 Gr~LrV~kA 281 (612)
T TIGR01645 273 GQYLRVGKC 281 (612)
T ss_pred CeEEEEEec
Confidence 999988654
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2.6e-15 Score=118.32 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.++||||+||++.++||+|.+||+.+|.|+.|-|--++.+ -.|.|||||+|.+.++|+.|++-++|+.|..+||.+-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 4899999999999999999999999999999988888733 2355699999999999999999999999999999886
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
|
T Consensus 112 ~ 112 (153)
T KOG0121|consen 112 W 112 (153)
T ss_pred c
Confidence 5
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=5.5e-14 Score=97.97 Aligned_cols=69 Identities=22% Similarity=0.398 Sum_probs=61.7
Q ss_pred EEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 135 LfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
|||+|||+++++++|.++|+.||.|..+++..++. |.++++|||+|.++++|++|++.++|..+.++.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999998864 4667799999999999999999999999988764
No 11
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=7.3e-14 Score=94.50 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=65.4
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+|||+|||.++++++|+++|++||.+..+++..++ +.++++|||+|.+.++|+.|++.|+|..+.+++++++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 3455699999999999999999999999998887653
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=3.7e-14 Score=136.74 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|++|+|+.++.+ |++||||||+|.+.++|+.|++.|||..|.+++++++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T---gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC---CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 3689999999999999999999999999999999998743 6778899999999999999999999999999999885
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 183 r 183 (612)
T TIGR01645 183 R 183 (612)
T ss_pred c
Confidence 3
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=3.6e-14 Score=123.87 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.++. ++|||||+|.++++|+.|| .|||..|.++++.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEe
Confidence 57999999999999999999999999999999998863 2239999999999999999 5999999999998865
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 77 a 77 (260)
T PLN03120 77 A 77 (260)
T ss_pred c
Confidence 3
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=5e-14 Score=134.28 Aligned_cols=76 Identities=22% Similarity=0.374 Sum_probs=70.8
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
+|||+|||.++||++|+++|++||.|.+|+|..++.+ ++++|||||+|.+.++|++|++.||+..|.+++++|.|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 7999999999999999999999999999999999843 566779999999999999999999999999999999764
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=5.8e-14 Score=130.07 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||.++++++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|++|++.|||+.|.++++.+.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 689999999999999999999999999999999998743 67778999999999999999999999999999999887
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
+
T Consensus 263 a 263 (457)
T TIGR01622 263 A 263 (457)
T ss_pred c
Confidence 4
No 16
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=105.45 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 124 ~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
...+||+.++.|||.|||+.+|.++..+||.+||.|+.+||-..+.++ | -|||.|++..+|.+|++.|+|+.+.
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr--G----TAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR--G----TAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC--c----eEEEEehHhhhHHHHHHHhcccccC
Confidence 346778889999999999999999999999999999999999887542 4 9999999999999999999999999
Q ss_pred ccccc
Q 028098 204 VAPNQ 208 (214)
Q Consensus 204 ~~P~~ 208 (214)
.++..
T Consensus 84 ~ryl~ 88 (124)
T KOG0114|consen 84 NRYLV 88 (124)
T ss_pred CceEE
Confidence 88754
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1e-13 Score=128.45 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |++||||||+|.+.++|++||. |+|..|.+.|+.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4789999999999999999999999999999999998743 6778899999999999999995 99999999999886
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 164 ~ 164 (457)
T TIGR01622 164 S 164 (457)
T ss_pred e
Confidence 4
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=1.1e-13 Score=129.72 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+..++|||+|||..+++++|+++|++||.|..+.|+.+..+ |+++|||||+|.+.++|+.||+.|||..|.+..+.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT---GLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34689999999999999999999999999999999988643 677889999999999999999999999999998877
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
+.
T Consensus 370 ~~ 371 (509)
T TIGR01642 370 QR 371 (509)
T ss_pred EE
Confidence 54
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=1.3e-13 Score=132.43 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec-cccc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV-VAPN 207 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~-~~P~ 207 (214)
++..++|||+|||++++|++|.++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++||+.|||+.|. ++.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 34578999999999999999999999999999999999964 566779999999999999999999999885 4444
Q ss_pred c
Q 028098 208 Q 208 (214)
Q Consensus 208 ~ 208 (214)
.
T Consensus 131 ~ 131 (578)
T TIGR01648 131 G 131 (578)
T ss_pred c
Confidence 3
No 20
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=1.5e-13 Score=113.57 Aligned_cols=78 Identities=31% Similarity=0.465 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
..+|||+|||.++++++|.++|.+||.|..+++..++.. |+++|||||+|.+.++|..|++.|+|..|.+++++++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~---~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET---GKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc---CccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 589999999999999999999999999999999999722 67777999999999999999999999999999999876
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 192 ~ 192 (306)
T COG0724 192 A 192 (306)
T ss_pred c
Confidence 3
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=118.73 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
..||||+||++.+|+++|+++|+.||.|.+|+|+.+. +.++||||+|.++++|+.|+ .|+|..|.+.|+.|-.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 5799999999999999999999999999999999984 23349999999999999999 8999999999988753
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.45 E-value=2.5e-13 Score=129.51 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+||+.++++++|+++|++||.|++|+++.+.. |.++|||||+|.+.++|++|++.|||..|.++|+.+.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 467899999999999999999999999999999999964 5666799999999999999999999999999999886
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 360 ~a 361 (562)
T TIGR01628 360 LA 361 (562)
T ss_pred ec
Confidence 54
No 23
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.9e-13 Score=117.61 Aligned_cols=78 Identities=24% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|-|.||+.+++|++|.+||.+||.|..|.|..++.+ |.+||||||.|.++++|++||+.|||+-+..--++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T---G~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET---GLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc---CcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 4789999999999999999999999999999999999965 8899999999999999999999999987766555444
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
|
T Consensus 265 w 265 (270)
T KOG0122|consen 265 W 265 (270)
T ss_pred e
Confidence 3
No 24
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.5e-13 Score=117.68 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~ 195 (214)
-++||||+|+|++..++|++.|++||+|+++.++.|+.+ |++|||+||.|.+.++|+.|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhc
Confidence 479999999999999999999999999999999999955 7888999999999999999996
No 25
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=6.6e-13 Score=89.29 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=62.8
Q ss_pred EcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 137 VgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
|+|||..+++++|+++|++||.|.++.+..++.. ++++++|||+|.+.++|+.|++.|++..+.++.+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT---GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC---CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999887632 566779999999999999999999999998887765
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.4e-14 Score=118.74 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+..|||||||++.||.+|..+|++||+|+.|-|++|+.+ |++|||||..|++..+..-|+..|||..|.++-+++
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T---GKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT---GKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC---CcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 789999999999999999999999999999999999965 899999999999999999999999999999998875
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=5.8e-13 Score=124.09 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCH--HHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP--AHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~--~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+||||||++++++++|..+|++||.|..|.|++.. | +|||||+|.+. .++.+||+.|||....++.+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-----G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-----C--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 5799999999999999999999999999999999443 3 55999999987 7899999999999999999999
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+.++
T Consensus 83 NKAK 86 (759)
T PLN03213 83 EKAK 86 (759)
T ss_pred eecc
Confidence 8765
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.3e-13 Score=110.58 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=62.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+++||||||+.++++.||+.+|..||.|..|-|..... | ||||||+++.+|+.|+..|+|..|++.-+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----G----fAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----G----FAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----C----ceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 68999999999999999999999999999987766542 4 9999999999999999999999999865543
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=9.2e-13 Score=124.12 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh--CCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L--nG~~l~~~P~~~ 209 (214)
+++|||+|||+++++++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.| ++..|.++|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k-----~----~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK-----R----QALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC-----C----EEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 7899999999999999999999999999999998654 3 9999999999999999874 789999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
++.
T Consensus 73 ~~s 75 (481)
T TIGR01649 73 NYS 75 (481)
T ss_pred Eec
Confidence 764
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.3e-12 Score=115.28 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
|+-+||||+-|+.+++|..|+..|+.||.|+.|+||.++.+ |+|||||||+|+++.+..+|.+..+|.+|.++-+.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vT---gkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVT---GKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeeccc---CCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 56799999999999999999999999999999999999854 889999999999999999999999999999987754
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=4.4e-13 Score=111.12 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+...||||+||+..++++-|++||-+.|.|+.++++.++-+ .+.+|||||+|.++++|+-|++.||..+|+++|++.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---QKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---ccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 34679999999999999999999999999999999999832 123349999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 8755
No 32
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.4e-12 Score=116.36 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+..++|+|.|+|+...|.||+.+|.+||.|.+|.|+.++. -+|||+||+|+++++|++|.++|||..|.++-|-+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 4468999999999999999999999999999999999973 25679999999999999999999999999998766
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
.+
T Consensus 169 n~ 170 (376)
T KOG0125|consen 169 NN 170 (376)
T ss_pred ec
Confidence 54
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.2e-13 Score=118.54 Aligned_cols=162 Identities=17% Similarity=0.292 Sum_probs=115.5
Q ss_pred CCCCCCCcccccccccc----cccccCCCCCCCccccchhhhhh-ccCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCcc
Q 028098 29 DYDVPSGHELSSYYTRD----DDRGALRGMRDTDSLGASYDRYL-RSAQI--SSYSG-GQSARHMSGGMPSRPVDDPRIV 100 (214)
Q Consensus 29 ~~~~~~~~~~~~y~~~~----~~r~~~~~~~~~~~~~~~~dr~~-~~~~~--~~~~~-~~~~r~~~gg~~G~~~~~~~~~ 100 (214)
|-+.+..+.+.|||||. ++|.-|.|+.+.++..-.-|.-. +|-|+ +-+-. .++-+++- -++|.-+-
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain-tlNGLrLQ----- 109 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN-TLNGLRLQ----- 109 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh-hhcceeec-----
Confidence 44556789999999986 77999999999887754444321 33332 22222 24445554 45554332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEE
Q 028098 101 GIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILC 180 (214)
Q Consensus 101 ~~gg~~~~~~~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~a 180 (214)
.+.+..+-.+|...... ...|||.+||..+|..||+++|++||.|...||+.|..+ |-+||.+
T Consensus 110 ------------~KTIKVSyARPSs~~Ik--~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt---g~srGVg 172 (360)
T KOG0145|consen 110 ------------NKTIKVSYARPSSDSIK--DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT---GLSRGVG 172 (360)
T ss_pred ------------cceEEEEeccCChhhhc--ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc---ceeccee
Confidence 23444444555443333 468999999999999999999999999999999999844 6778899
Q ss_pred EEEecCHHHHHHHHHHhCCCeec--ccccccccCC
Q 028098 181 FVDFVSPAHAATAMDALQVQSKV--VAPNQYQSGS 213 (214)
Q Consensus 181 FVeF~~~~~A~~Al~~LnG~~l~--~~P~~~~~~~ 213 (214)
||.|+.+.+|+.||..|||.+-. ..||-+++.+
T Consensus 173 FiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 173 FIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred EEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 99999999999999999998654 3456555543
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=2e-12 Score=124.36 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~f--G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..++|||+||++++++++|+++|++| |.|++|+++.+ ||||+|.+.++|++|++.|||..|.+++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-----------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-----------YAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-----------eEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 35789999999999999999999999 99999987643 999999999999999999999999999999
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
+.+.
T Consensus 301 V~~A 304 (578)
T TIGR01648 301 VTLA 304 (578)
T ss_pred EEEc
Confidence 9865
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=6.6e-12 Score=85.22 Aligned_cols=73 Identities=27% Similarity=0.442 Sum_probs=65.4
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+|+|+|||..+++++|+++|+.||.|..+.+..++.. +++++|||+|.+.++|..|++.+++..+.++.+.++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999987643 345599999999999999999999999988887664
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=3.7e-12 Score=120.04 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
++++|||+|||+ .+++++|++||++||.|.+|+++.++. | ||||+|.+.++|+.|++.|||..|.++++++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~----g----~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK----E----TALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC----C----EEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 478999999998 699999999999999999999988742 3 9999999999999999999999999999988
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
..
T Consensus 346 ~~ 347 (481)
T TIGR01649 346 CP 347 (481)
T ss_pred EE
Confidence 64
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.8e-12 Score=118.97 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---cccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK---VVAPNQ 208 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l---~~~P~~ 208 (214)
..+|||+.|+..+||.|++++|++||.|++|+|+++..+ .++|||||.|.++|.|..||++|||... +..|+.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~----~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG----LSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccc----cccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 679999999999999999999999999999999999863 4455999999999999999999999643 567888
Q ss_pred cccCCC
Q 028098 209 YQSGST 214 (214)
Q Consensus 209 ~~~~~~ 214 (214)
+++..|
T Consensus 200 VkFADt 205 (510)
T KOG0144|consen 200 VKFADT 205 (510)
T ss_pred EEeccc
Confidence 887654
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=5.6e-12 Score=117.56 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=73.4
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
+.|||||+|++++|++|.++|+..|.|.+++++.|+.+ |++|||+|++|.+.++|+.|++.|||+++.++++++.+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t---G~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET---GKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC---CCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 79999999999999999999999999999999999865 899999999999999999999999999999999988654
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.1e-12 Score=109.89 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.--+||+-|...++-+.|++.|.+||+|.++|+++|-.+ +|+|||+||.|.+.++|+.||+.|||.-|..+-|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T---~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT---GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccC---CcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 346999999999999999999999999999999999855 78899999999999999999999999999999988776
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 139 A 139 (321)
T KOG0148|consen 139 A 139 (321)
T ss_pred c
Confidence 4
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=9.1e-12 Score=114.41 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
..-+|||+.+|...+|+||+++|++||.|.+|-|++||.+ |.+||||||.|.++++|.+|+.+|++.+.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---~~s~gcCFv~~~trk~a~~a~~Alhn~kt 101 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---GQSKGCCFVKYYTRKEADEAINALHNQKT 101 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---CcccceEEEEeccHHHHHHHHHHhhcccc
Confidence 4678999999999999999999999999999999999954 67888999999999999999999998654
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.27 E-value=3.7e-12 Score=119.55 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=102.5
Q ss_pred CCCCCCCccccchhhhhhccCC--CCCCCCCCCCCCCCCCCCCCCCCCCCccccCC-CCC----CCCCCCCCCCCCCCCC
Q 028098 51 LRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSARHMSGGMPSRPVDDPRIVGIGG-MDP----GPSAKDRALGLGGGRS 123 (214)
Q Consensus 51 ~~~~~~~~~~~~~~dr~~~~~~--~~~~~~~~~~r~~~gg~~G~~~~~~~~~~~gg-~~~----~~~~~~r~~g~~~~~p 123 (214)
.-.|+|...|++-..+ ++++ |..|-+.+.-.-+- ++.|.-+.+-++|.--. +.. ..++.-.+.++. .
T Consensus 203 ~gkVrdVriI~Dr~s~--rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~--~- 276 (549)
T KOG0147|consen 203 VGKVRDVRIIGDRNSR--RSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFT--G- 276 (549)
T ss_pred hcCcceeEeeccccch--hhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhccccccccccc--c-
Confidence 3478899999755553 7877 46777665553332 57776655555554211 000 000000001111 0
Q ss_pred CCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 124 ~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
+-..|||+||.++++++.|+.+|++||.|..|.+..+..+ |.+|||+||+|.+.++|.+|++.|||+.|.
T Consensus 277 -------p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t---G~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 277 -------PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET---GRSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred -------chhhhhhcccccCchHHHHhhhccCcccceeeeecccccc---ccccCcceEEEecHHHHHHHHHHhccceec
Confidence 1234999999999999999999999999999999998633 778889999999999999999999999999
Q ss_pred cccccccc
Q 028098 204 VAPNQYQS 211 (214)
Q Consensus 204 ~~P~~~~~ 211 (214)
+++|++..
T Consensus 347 Gr~ikV~~ 354 (549)
T KOG0147|consen 347 GRLIKVSV 354 (549)
T ss_pred CceEEEEE
Confidence 99998754
No 42
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.26 E-value=7.7e-12 Score=105.81 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
...+|-|-||.+-++.++|..+|++||.|.+|.|+.|+-+ ++++|||||-|.+..+|+.|+++|+|..|.++-+.+|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3678999999999999999999999999999999999832 4566699999999999999999999999999999877
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
-.
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 54
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.5e-11 Score=110.93 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
-.+-||||.||.++.|+||..||++.|.|-++||+.|+-. |+++|||||.|-+.++|++|++.||+++|.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s---G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS---GDNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC---CCCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 3789999999999999999999999999999999999722 778889999999999999999999999875
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.8e-11 Score=106.79 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..+.|.|.-||.++|++||+.||..+|+|++|+|++||.+ |.+.||+||.|.++++|++|+..|||..|..+-|+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---ccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3578999999999999999999999999999999999944 7777899999999999999999999999988888765
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 117 yA 118 (360)
T KOG0145|consen 117 YA 118 (360)
T ss_pred ec
Confidence 43
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.8e-11 Score=97.66 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
....|||.++...++|++|.+.|..||.|+.+.|--|+.+ |=.||||.|+|++.++|++|+++|||..|.+.++++-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRt---Gy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRT---GYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccc---ccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3789999999999999999999999999999999999733 7788899999999999999999999999999998875
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
|
T Consensus 148 w 148 (170)
T KOG0130|consen 148 W 148 (170)
T ss_pred E
Confidence 4
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=3.6e-11 Score=102.46 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCcCCHHHHHH----hhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAH----IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~----lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
+.||||.||+.-+..++|+. ||++||.|.+|...... +..|-|||.|.+.+.|..|+.+|+|+.+.++||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~------KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP------KMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC------CccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 56999999999999999887 99999999998766553 344499999999999999999999999999999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
+||-.+
T Consensus 83 riqyA~ 88 (221)
T KOG4206|consen 83 RIQYAK 88 (221)
T ss_pred heeccc
Confidence 999664
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=1.8e-11 Score=102.14 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+++|||+|||.++.+.||++||.+||.|.+|.|..-.. +..||||+|+++.+|+.||..-+||.+.+--+++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------CCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 68999999999999999999999999999998866541 23499999999999999999999988887665543
No 48
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.8e-11 Score=112.28 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=100.2
Q ss_pred cccccccccccccc-----cCCCCCCCccccchhhhhhccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 028098 36 HELSSYYTRDDDRG-----ALRGMRDTDSLGASYDRYLRSAQISSYSG-GQSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (214)
Q Consensus 36 ~~~~~y~~~~~~r~-----~~~~~~~~~~~~~~~dr~~~~~~~~~~~~-~~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~ 109 (214)
++||.=++-|-|.. .-+.|||+ + +.-+.|++ |.. .++.+|+- .||...+.+..+..+- ..
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvn------f~~~~da~~A~~-~~n~~~~~~~~~rim~-s~--- 73 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVN------FQQPADAERALD-TMNFDVLKGKPIRIMW-SQ--- 73 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEe------cCCHHHHHHHHH-HcCCcccCCcEEEeeh-hc---
Confidence 56666666664422 23566666 4 44454444 444 47778998 8888888876544331 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHH
Q 028098 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (214)
Q Consensus 110 ~~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~ 189 (214)
.| ...|||.||+.+++.++|.++|+.||.|.+|++..++. | +||| ||+|+++++
T Consensus 74 -------------------rd-~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 74 -------------------RD-PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEES 127 (369)
T ss_pred -------------------cC-CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHH
Confidence 01 11299999999999999999999999999999999985 3 6779 999999999
Q ss_pred HHHHHHHhCCCeeccccccc
Q 028098 190 AATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 190 A~~Al~~LnG~~l~~~P~~~ 209 (214)
|.+|++.|||..+.+.++.+
T Consensus 128 a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred HHHHHHHhcCcccCCCeeEE
Confidence 99999999999998887654
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.2e-11 Score=111.17 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
-+.|||.||+.++|||.|+.+|++||.|..|+.+.| ||||.|.++++|.+|++.|||+.|.+.|+-+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 478999999999999999999999999999998876 9999999999999999999999999998865
No 50
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-11 Score=105.13 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC--CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k--~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..+|||||+|..+++|.-|...|-+||.|+.|.++.|. .+|++ |+||+|+..|+|.+||+.||+..|+++-++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg-----FgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG-----FGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc-----eeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 46899999999999999999999999999999999997 56664 999999999999999999999999998766
Q ss_pred ccc
Q 028098 209 YQS 211 (214)
Q Consensus 209 ~~~ 211 (214)
+.-
T Consensus 84 VN~ 86 (298)
T KOG0111|consen 84 VNL 86 (298)
T ss_pred Eee
Confidence 543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=5.5e-11 Score=111.91 Aligned_cols=170 Identities=11% Similarity=0.093 Sum_probs=106.2
Q ss_pred CCcccccccccccccccCCCCCCCccccchhhhhhccC--CCCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 028098 34 SGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSA--QISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (214)
Q Consensus 34 ~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~--~~~~~~~~-~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~~ 110 (214)
+.+.+++|=+-+-| .-.-.|+.+-+++ +..+.++. +++.|.-. +.-|+.. ...+.-+.++.+..--. .....
T Consensus 13 lp~~~~~~qL~e~F-S~vGPik~~~vVt--~~gs~~~RGfgfVtFam~ED~qrA~~-e~~~~kf~Gr~l~v~~A-~~R~r 87 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFF-SYVGPIKHAVVVT--NKGSSEKRGFGFVTFAMEEDVQRALA-ETEQSKFEGRILNVDPA-KKRAR 87 (678)
T ss_pred CCCccchhHHHHhh-hcccCcceeEEec--CCCcccccCccceeeehHhHHHHHHH-HhhcCcccceecccccc-ccccc
Confidence 44555555554432 2234566666665 33333333 35677664 4446665 55555555544332111 10111
Q ss_pred CCCCCCCC--------CCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEE
Q 028098 111 AKDRALGL--------GGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182 (214)
Q Consensus 111 ~~~r~~g~--------~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFV 182 (214)
...-.-+- ...+|....-..+..+|.|.||||.|.+.+|+.+|+.||.|.+|.|+.++. |+..|||||
T Consensus 88 ~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV 163 (678)
T KOG0127|consen 88 SEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFV 163 (678)
T ss_pred chhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEE
Confidence 10000000 001111110112367999999999999999999999999999999997764 555579999
Q ss_pred EecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 183 DFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 183 eF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
.|.+..+|+.|++.+||..|.++|+-+-|.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 999999999999999999999999876653
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=8.2e-11 Score=110.36 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCC------------CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPF------------VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~f------------G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
..++|||+|||+++|+++|+++|.++ +.|..+.+..+ +|||||+|.+.++|+.|| +||
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---------kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---------KNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---------CCEEEEEeCCHHHHhhhh-cCC
Confidence 46899999999999999999999975 33444444332 339999999999999999 699
Q ss_pred CCeeccccccccc
Q 028098 199 VQSKVVAPNQYQS 211 (214)
Q Consensus 199 G~~l~~~P~~~~~ 211 (214)
|..|.+.+++++.
T Consensus 244 g~~~~g~~l~v~r 256 (509)
T TIGR01642 244 SIIYSNVFLKIRR 256 (509)
T ss_pred CeEeeCceeEecC
Confidence 9999999988863
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=3.2e-11 Score=106.33 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=63.3
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
-+|||||||.++++.+|+.||++||+|.+|.|+.+ |+||..++...|+.||+.||||.|++.-|.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecceEEEEE
Confidence 38999999999999999999999999999999988 89999999999999999999999998877664
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.13 E-value=1.7e-10 Score=106.44 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhc-CCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~-~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+.+||.|+|+++.|.+|++||. +.|+|..|.|..|.+ ||++|||.|||.++|.+++|++.||-+.+.++|++++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 45699999999999999999998 579999999999986 6777799999999999999999999999999999876
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
-
T Consensus 120 E 120 (608)
T KOG4212|consen 120 E 120 (608)
T ss_pred c
Confidence 3
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.3e-10 Score=109.53 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=57.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L 197 (214)
..||||.|||+++|+++|.+.|++||.|..+.|+.++.+ |.++|+|||.|.+...|.+||++.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhc
Confidence 489999999999999999999999999999999999844 566679999999999999999865
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=7.4e-11 Score=103.25 Aligned_cols=67 Identities=30% Similarity=0.433 Sum_probs=62.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
.++||||-|....+|+|++.+|++||.|.+|.+.+... |.+||||||.|.+..+|+.||.+|+|...
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqT 85 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQT 85 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhccccc
Confidence 67999999999999999999999999999999999875 66777999999999999999999999754
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.8e-10 Score=76.51 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=48.7
Q ss_pred HHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 149 VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
|.++|++||.|.++++..++ ++ +|||+|.+.++|+.|++.|||..+.++++++++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~----~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RG----FAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TT----EEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999997775 13 999999999999999999999999999998764
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.1e-10 Score=80.08 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHHhhc----CCCCeEEEE-EeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 146 RREVAHIFR----PFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 146 e~eL~~lF~----~fG~i~~vr-l~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
+++|+++|+ +||.|.+|. ++.++... .|.++|||||+|.+.++|++|++.|||..+.++++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~-~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY-ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC-CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 578889998 999999995 66665221 145667999999999999999999999999998875
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=9.9e-10 Score=101.45 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..++|||.|||+++||.-|++-|..||.|+.+.|+.. |++|| .|.|.++++|+.|+..|+|..|.++-|++
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 3789999999999999999999999999999988544 66666 89999999999999999999999988764
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=4.4e-10 Score=109.22 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.++|||||.|+.+++|.||..+|+.||.|.+|.|+..+ | ||||....+.+|++|+.+|+.+.+..+-|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 47999999999999999999999999999999998886 4 99999999999999999999999999999999
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
||-
T Consensus 491 Wa~ 493 (894)
T KOG0132|consen 491 WAV 493 (894)
T ss_pred eec
Confidence 973
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=2.7e-10 Score=100.48 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|+|+||.+.|+..||+..|++||.|.+|.|+++ ++||.|+..++|..|++.|+|..+.+++|.+|
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 3789999999999999999999999999999999988 99999999999999999999999999999887
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=7.7e-10 Score=96.94 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.+.|||--||.+..+.||..+|-+||.|++.++..|+.+ ..+|-|+||.|+++.+|++||.+|||+.|.-+-+++|
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT---NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT---NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc---ccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4799999999999999999999999999999999999843 3456699999999999999999999999987777665
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=1.3e-09 Score=92.01 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=65.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC-CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f-G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
...+||..+|+.+-+.+|..+|.+| |.+..+||-+++.+ |++||||||+|++++.|+-|-+.||+|.+..+-.+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrT---GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRT---GNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccccc---CCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 5689999999999999999999999 77778888777643 88999999999999999999999999998876543
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-09 Score=98.41 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+.|||.-|++-+++++|.-||+.||.|+.|.++.++.+ |.+.-||||+|++.+++++|.-.|++..|.++-|-+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt---gdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT---GDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc---cchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 789999999999999999999999999999999999844 888889999999999999999999999999887643
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.3e-09 Score=98.84 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
-++||||.+.+...|+.|+..|.+||.|+++.+-.|.-+ |+-||||||+|+-+|.|+-|++.|||..+.++-+++
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T---~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV 187 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 187 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccc---ccccceEEEEEeCcHHHHHHHHHhccccccCccccc
Confidence 479999999999999999999999999999999999833 555669999999999999999999999999987765
No 66
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.90 E-value=2.6e-09 Score=92.87 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
..+|+|.|||..|++++|++||..||.++.+-|..++. |+++|+|=|.|...++|+.|++.+||..|.++||++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 57899999999999999999999999999998988886 56677999999999999999999999999999998763
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=1.3e-09 Score=105.21 Aligned_cols=79 Identities=29% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|+|.|||+..+-++++.||..||.|++|||+....+ +...|||||+|.++.+|.+|+++|..+.|+++-.-|+|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 579999999999999999999999999999999988422 22334999999999999999999999999999999988
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 690 A~ 691 (725)
T KOG0110|consen 690 AK 691 (725)
T ss_pred hc
Confidence 64
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=2.4e-09 Score=103.29 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=68.4
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++|||.||++++|.++|..+|...|.|+++.|...+.....=.++||+||+|.++++|+.|+++|||+.|.+..+.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 449999999999999999999999999999988877332223456899999999999999999999999999998875
No 69
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.88 E-value=1.8e-09 Score=89.75 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=67.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEE-EEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~v-rl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+..|||+||.++++|..|.++|+.||.+... .++++..+ |+++||+||.|.+.+.+.+|++.|||..++-+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 5799999999999999999999999998653 56666643 6788899999999999999999999999999998753
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=3.9e-09 Score=94.95 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH-hCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA-LQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~-LnG~~l~~~P~~~ 209 (214)
..+||||++|-..++|.+|++.|.+||+|+.+++...+ + ||||+|.+++.|+.|.+. +|-..|.+.-+.|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----~----CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----G----CAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----c----cceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45899999999999999999999999999999998886 4 999999999999999865 6667889999999
Q ss_pred ccCCC
Q 028098 210 QSGST 214 (214)
Q Consensus 210 ~~~~~ 214 (214)
+||++
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99974
No 71
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=2.2e-09 Score=91.70 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
...||||+|+-..++|+-|.+||-+.|.|..|.|+.++. +++| ||||+|.++.+..-|++.|||..+...+++++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 367999999999999999999999999999999999875 4555 99999999999999999999999999999987
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 3
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.3e-08 Score=93.58 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=65.1
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
..|||| +++||..|.++|+++|.|.++|+..+- + +.|||||.|.++++|++||++||...|+++|++|-|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMW 71 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeeh
Confidence 479999 999999999999999999999999997 4 345999999999999999999999999999999876
No 73
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=97.46 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC---CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE---SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k---~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
.+.|||+||++.++++.|...|..||.|..|+++.-+ .+++ ..-|+||.|-++.+|+.|++.|||..+...+++
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r---~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRR---ERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcc---ccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 6789999999999999999999999999999988765 2222 234999999999999999999999999999999
Q ss_pred cccCCC
Q 028098 209 YQSGST 214 (214)
Q Consensus 209 ~~~~~~ 214 (214)
|-||++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999964
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.67 E-value=1.6e-08 Score=90.95 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH----hCCCeecc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA----LQVQSKVV 204 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~----LnG~~l~~ 204 (214)
..++|||++|+|+++++.|++.|++||+|.+|.++.++.+ |+++||+||+|.++++..+++.. |.|..|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecccccccCCccccc
Confidence 4789999999999999999999999999999999999854 67778999999999999888843 55554443
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.63 E-value=1.4e-07 Score=80.98 Aligned_cols=73 Identities=36% Similarity=0.471 Sum_probs=61.0
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
++.-+||||.+||.++.-+||..||..|-.++.+.|.... .++ -.|.+|||.|.+..+|.+|+.+|||..+.-
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~---~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQ---VCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCc---cccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 4457999999999999999999999999999887665442 111 134699999999999999999999998764
No 76
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.5e-08 Score=93.25 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
+..+|+|-|||..|++++|..+|+.||+|++|+....+. | .+||+|.|..+|++|+++|++..+.++-++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~----~----~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR----G----IVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC----c----eEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 468999999999999999999999999999988766653 4 999999999999999999999998887776
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=7.5e-08 Score=83.82 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+...+||+|.|..+++++.|...|.+|-.+...++++++.+ |++|||+||.|.+++++..|+..|||..+..+||++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT---gKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT---GKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccc---cccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34579999999999999999999999999999999999743 899999999999999999999999999999999987
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
.+
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 53
No 78
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.53 E-value=2.9e-07 Score=78.67 Aligned_cols=75 Identities=31% Similarity=0.534 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec-cccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV-VAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~-~~P~~~ 209 (214)
++.+||+.|||..++.+.|..+|.+|...++||++..+. + .|||+|.+...|..|.++|+|..|. ...|+|
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 488999999999999999999999999999999999763 3 9999999999999999999999887 777777
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
...+
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6554
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=8.5e-08 Score=87.28 Aligned_cols=167 Identities=11% Similarity=0.091 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCcccccccccc--cccccCCCCCCCccccchhhhhh-ccCCC--CCCCCCCCCC-CCCCCCCCCCCCC
Q 028098 23 SKRPRTDYDVPSGHELSSYYTRD--DDRGALRGMRDTDSLGASYDRYL-RSAQI--SSYSGGQSAR-HMSGGMPSRPVDD 96 (214)
Q Consensus 23 ~kr~~~~~~~~~~~~~~~y~~~~--~~r~~~~~~~~~~~~~~~~dr~~-~~~~~--~~~~~~~~~r-~~~gg~~G~~~~~ 96 (214)
..|.++--.||-.+....|+.-. +-|..|..+..+|+|+.++|--+ .-++| +.|--.|++. +.. .|||.-+.+
T Consensus 104 ~qrqqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE-qMNg~mlGG 182 (544)
T KOG0124|consen 104 MQRQQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGG 182 (544)
T ss_pred HHHHHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH-HhccccccC
Confidence 34444433445444445554433 45888999999999999999765 33333 2332234432 333 567655544
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCC-CC----C--CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCC
Q 028098 97 PRIVGIGGMDPGPSAKDRALGLGGGRSEVP-LP----P--DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (214)
Q Consensus 97 ~~~~~~gg~~~~~~~~~r~~g~~~~~p~~~-~p----~--~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~ 169 (214)
|.+-.+ .-+..|... .. . ..-++|||..+.++.+|+||+.+|+-||.|+.|.|.++.+
T Consensus 183 RNiKVg---------------rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 183 RNIKVG---------------RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred cccccc---------------CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC
Confidence 432211 000111100 00 0 1247999999999999999999999999999999999884
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 170 RHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 170 ~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
. +.-|||+|++|.+..+-..|+..||=+.|.+.-++
T Consensus 248 ~---~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 248 G---RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR 283 (544)
T ss_pred C---CCccceeeEEeccccchHHHhhhcchhhcccceEe
Confidence 3 34566999999999999999998887766665443
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.51 E-value=2.1e-07 Score=83.79 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=93.4
Q ss_pred CcccccccccccccccCCCCCCCccccchhhhhhccCCC--CCCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 028098 35 GHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQI--SSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSA 111 (214)
Q Consensus 35 ~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~~--~~~~~~~~~-r~~~gg~~G~~~~~~~~~~~gg~~~~~~~ 111 (214)
..+.+.=-++|-| ..|-.|.|..++.+... .|+.++ ..|...++. +.+. ..-+.++.+.+-.
T Consensus 15 sw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t--~rsrgFgfv~f~~~~~v~~vl~--~~~h~~dgr~ve~---------- 79 (311)
T KOG4205|consen 15 SWETTEESLREYF-SQFGEVTDCVVMRDPST--GRSRGFGFVTFATPEGVDAVLN--ARTHKLDGRSVEP---------- 79 (311)
T ss_pred CccccHHHHHHHh-cccCceeeEEEeccCCC--CCcccccceecCCCcchheeec--ccccccCCccccc----------
Confidence 3344444445545 66778888888876555 466553 455543332 2222 2233333332211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHH
Q 028098 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191 (214)
Q Consensus 112 ~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~ 191 (214)
.+...-..+. ...-.....+|||++||.++++++|++.|.+||.|..+.++.|+.+ .++++|+||.|.+++.+.
T Consensus 80 -k~av~r~~~~--~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 80 -KRAVSREDQT--KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred -eeccCccccc--ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccc
Confidence 1111100000 0000113679999999999999999999999999999999998844 456679999999999999
Q ss_pred HHHH----HhCCCeeccc
Q 028098 192 TAMD----ALQVQSKVVA 205 (214)
Q Consensus 192 ~Al~----~LnG~~l~~~ 205 (214)
+++. .|+|+.+.++
T Consensus 154 kv~~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVK 171 (311)
T ss_pred eecccceeeecCceeeEe
Confidence 9984 3666665543
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.50 E-value=9.6e-08 Score=82.02 Aligned_cols=66 Identities=27% Similarity=0.505 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
...||||.||..+|+|++|+.+|+.|-.+..++|...- |. -.|||+|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Cc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 35799999999999999999999999999888876553 21 17899999999999999999998874
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.50 E-value=1.7e-07 Score=81.23 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
...+||+|+.+.+|-+++...|+.||.|..|.++.++.. |.+|||+||+|.+.+.++.|+. |||..|.++.+..
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 579999999999999999999999999999999999843 5677899999999999999998 9999998887654
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.43 E-value=2.9e-07 Score=85.79 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH----hCCCeeccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA----LQVQSKVVA 205 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~----LnG~~l~~~ 205 (214)
...+|||+|||+++++++|+++|.+||.|++.+|.... ++++...||||+|.+.++++.||++ +.+..+.+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEE
Confidence 34669999999999999999999999999999887765 2233336999999999999999976 555555443
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.42 E-value=5e-07 Score=81.54 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeE--------EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~--------~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
+..++.|||.|||.++|-+|+.++|+.||.|. .|+|..+.. |++||=|.+.|...++.+-|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcc
Confidence 34577899999999999999999999999986 378888875 788889999999999999999999999
Q ss_pred eeccccccccc
Q 028098 201 SKVVAPNQYQS 211 (214)
Q Consensus 201 ~l~~~P~~~~~ 211 (214)
.|.+.-|+++-
T Consensus 207 ~~rg~~~rVer 217 (382)
T KOG1548|consen 207 ELRGKKLRVER 217 (382)
T ss_pred cccCcEEEEeh
Confidence 98888777654
No 85
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.40 E-value=3.9e-07 Score=86.90 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC--CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k--~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+.|||.+|...+...+|+.||++||.|+-.+++++- .+-+. |+||++.+.++|.+||+.|+-+.|+++.|.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRC-----YGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARC-----YGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcce-----eEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 5789999999999999999999999999999999875 22222 9999999999999999999999999888876
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
-+.
T Consensus 480 Eka 482 (940)
T KOG4661|consen 480 EKA 482 (940)
T ss_pred eec
Confidence 543
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=2.5e-07 Score=79.27 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=57.8
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.+||++||+.+.+++|.+||..||.+.+|.|... |+||+|++..+|..|+..|||..|.+.-
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-----------f~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-----------FGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc-----------cceeccCchhhhhcccchhcCceeccee
Confidence 7899999999999999999999999999987554 9999999999999999999999998764
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.13 E-value=9.6e-06 Score=73.53 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~--------vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
.+.+|||-+||..+++++|.++|.+++.|+. +.|-+++.+ +++|+=|.|.|+++.+|+.|+..+++..+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT---~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKET---GAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccc---cCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3679999999999999999999999999863 455556533 78999999999999999999999999999
Q ss_pred ccccccccc
Q 028098 203 VVAPNQYQS 211 (214)
Q Consensus 203 ~~~P~~~~~ 211 (214)
+..+|+|..
T Consensus 142 ~gn~ikvs~ 150 (351)
T KOG1995|consen 142 CGNTIKVSL 150 (351)
T ss_pred cCCCchhhh
Confidence 998887754
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.10 E-value=8.3e-07 Score=83.97 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
...|+|+--|+...+..+|.++|+.+|.|..|+++.|+.. +.+||.|||+|.+.+....|| +|.|..+.+.|+++|
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 4589999999999999999999999999999999999833 456779999999999999999 999999999999987
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 254 ~ 254 (549)
T KOG0147|consen 254 L 254 (549)
T ss_pred c
Confidence 4
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=4.1e-06 Score=79.46 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
++..+++||++||...++.+++++...||.++..+++.+... |.+|||||.+|-++.-...|++.|||..+.+..+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 345689999999999999999999999999999999999854 67788999999999999999999999999988776
Q ss_pred cc
Q 028098 209 YQ 210 (214)
Q Consensus 209 ~~ 210 (214)
.|
T Consensus 363 vq 364 (500)
T KOG0120|consen 363 VQ 364 (500)
T ss_pred ee
Confidence 55
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=2.3e-05 Score=59.96 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=40.0
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
..|.|.+++..++.++|+++|++||.|..|.+..... -|||-|.+++.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 4789999999999999999999999999999887753 7999999999999999876544
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.95 E-value=2.1e-05 Score=73.89 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=49.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
..-|-+.+|||+||++||.++|+.++ |..+.+++.. |++.|=|||+|.+++++++|++.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~-----Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRN-----GRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccC-----CCcCcceEEEeechHHHHHHHHh
Confidence 45677889999999999999999985 7777666664 55666999999999999999964
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.93 E-value=5.2e-05 Score=57.42 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=58.3
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~f--G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
+||-|.|+|...|.++|.+++... |.+.-+-|+.|-.+ +-..|||||.|.+++.|..-.+.++|.....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 699999999999999999888753 66777888888632 3456799999999999999999999988753
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.87 E-value=9.9e-06 Score=72.22 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=68.5
Q ss_pred CCEEE-EcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLF-VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLf-VgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++| |++|++++++++|+..|..+|.|..++++.++.. |.++||+||+|.+..++..|+.. +...+...|+.+-
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s---~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEES---GDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCc---cchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 45555 9999999999999999999999999999999854 78999999999999999999987 8899999988876
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
.+
T Consensus 260 ~~ 261 (285)
T KOG4210|consen 260 ED 261 (285)
T ss_pred cC
Confidence 54
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=1e-05 Score=69.38 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+.|+|.+|+..+.+.+|.+.|.++|.+..+.+.. + ++||+|.+.++|..|++.|+|..+.+.++..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~-------~----~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR-------N----FAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc-------c----ccceeehhhhhhhhcchhccchhhcCceeee
Confidence 467899999999999999999999999985555411 2 8999999999999999999999999888764
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.74 E-value=7.7e-05 Score=68.99 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+..|.|.||... +|.+.|-.||+-||+|..|+|..++.. -|.|++.+...|+-|++.|+|..++++++++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 689999999765 899999999999999999999998732 69999999999999999999999999998864
No 96
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.67 E-value=0.0003 Score=68.83 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=61.3
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeE-EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~-~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+.|-|.|+|++++-+||.++|..|--+- +|++..+.. |++.|-|.|.|+++++|..|..-|++.+|.-+-+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 4888999999999999999999996553 455555543 777789999999999999999999999988766543
No 97
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.67 E-value=7.4e-05 Score=69.38 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=57.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeC---CCCCCCCCc-------ccEEEEEecCHHHHHHHHHHhCC
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK---ESRHPGGDP-------LILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~---k~~~~gG~~-------kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|||..- ...-++..+ |-||+|+|+..+.|.+|.+.|+-
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5899999999999888999999999999999998765 211122333 57999999999999999998853
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.64 E-value=0.00021 Score=67.30 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=49.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~-vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
...|-+.+||+.||++||.++|+..--+.. +.|+.++. |++.|=|||+|++.+.|++||..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHHH
Confidence 458889999999999999999998754444 55666654 44556999999999999999953
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.53 E-value=0.00041 Score=51.39 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=44.6
Q ss_pred CEEEEcCCCCcCCHHH----HHHhhcCCCC-eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 133 STLFVEGLPSDCSRRE----VAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 133 ~tLfVgnLp~~~te~e----L~~lF~~fG~-i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
+.|+|.|||.+.+... |+.|+..+|. |.+| .. + .|+|.|.+++.|+.|.+.|+|-.+.+.-|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~------~----tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG------G----TAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC------C----EEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 4799999999988776 5577778876 3333 11 3 89999999999999999999998888877
Q ss_pred cccc
Q 028098 208 QYQS 211 (214)
Q Consensus 208 ~~~~ 211 (214)
.++.
T Consensus 70 ~v~~ 73 (90)
T PF11608_consen 70 SVSF 73 (90)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6654
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.44 E-value=0.00031 Score=47.28 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=42.3
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHH
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al 194 (214)
++|-|.+.+.+..+.-| ..|.+||+|.++.+..... +.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~~---------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPESTN---------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCCc---------EEEEEECCHHHHHhhC
Confidence 57889999988775555 5788899999998873322 8999999999999985
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.43 E-value=9.7e-05 Score=68.34 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHH
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~ 192 (214)
+++.|.++|||++|+|+||.+|+.+||.|..+.+...+. .||++|.+.++|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn---------QAflem~d~~sAvt 79 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN---------QAFLEMADEESAVT 79 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch---------hhhhhhcchhhhhh
Confidence 478999999999999999999999999999998888764 79999999998776
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00024 Score=68.05 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCc------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSD------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~------~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
.+.|+|.|+|-- .-..-|..+|+++|.+..+.++.+.. |..|||.|++|.+..+|+.|++.|||+.|.-.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 478999999853 22334678999999999999998874 45788999999999999999999999988643
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=9.5e-05 Score=73.36 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
...|||.|+|+.+|.++|+.+|..+|.+++++++..+. |+|||.|||.|.++.+|..+....+...+.-.-..+|.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 56899999999999999999999999999999888875 78899999999999999999877666555554444443
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00061 Score=64.55 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCccc---EEEEEecCHHHHHHHHHH
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg---~aFVeF~~~~~A~~Al~~ 196 (214)
-+++||||+||++++|++|...|.+||.+ .|..+.+...+..=-+|| |+|..|+++.+..+-+.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 47899999999999999999999999986 556664333222224677 999999999888776654
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0011 Score=62.91 Aligned_cols=66 Identities=29% Similarity=0.335 Sum_probs=57.5
Q ss_pred CCCCCCCEEEEcCCCCcCCHHHHHHhhc-CCCCeEEEEEeeC-CCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 127 LPPDASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 127 ~p~~~s~tLfVgnLp~~~te~eL~~lF~-~fG~i~~vrl~~~-k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
.+-|+.+|||||+||--++.+||..+|. -||.|+.|-|=.| +=|. |||-|=|.|.+..+-.+||++
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY----PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY----PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC----CCCcceeeecccHHHHHHHhh
Confidence 3456789999999999999999999999 7999999999888 4433 455999999999999999975
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.0049 Score=52.12 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
...+.|.+||+.-+|.+|++...+.|.|+...+..| | .+.|+|...|+.+-|+..|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhccccc
Confidence 568999999999999999999999999998888777 4 899999999999999999887654
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.08 E-value=0.003 Score=58.35 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=48.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC----CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f----G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
--.|-+.+||++|++.++.++|.+- +..+.|.++.... |++.|=|||.|..+++|+.||..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 3467778999999999999999743 3445666666644 56666999999999999999964
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.97 E-value=0.002 Score=58.73 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCcCCHHHH------HHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 132 SSTLFVEGLPSDCSRREV------AHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL------~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
.+-+||-+||+.+..|++ .++|.+||.|+.+.+-.+- +-.+ -....-.||.|.+.++|+.||.+.+|..+.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~ns-t~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNS-TASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccccc-ccccceEEEEecchHHHHHHHHHhccccccC
Confidence 568999999999888873 2789999999988654433 1111 0111124999999999999999999999999
Q ss_pred cccccccCCC
Q 028098 205 APNQYQSGST 214 (214)
Q Consensus 205 ~P~~~~~~~~ 214 (214)
+-++-.-|-|
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9888766654
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.97 E-value=0.0026 Score=58.58 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHH
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~ 195 (214)
+.++-.+.|.+|-..++|.+|.+..+.||.|..|.++..+. .|.|+|++.+.|++|+.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r---------~alvefedi~~akn~Vn 85 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR---------QALVEFEDIEGAKNCVN 85 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc---------eeeeeeccccchhhhee
Confidence 34577999999999999999999999999999988776652 79999999999999984
No 110
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.95 E-value=0.0053 Score=45.42 Aligned_cols=55 Identities=18% Similarity=0.409 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
....+|. .|......||.+||++||.| .|..+.+. -|||...+++.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 4566776 99999999999999999987 77788884 79999999999999998875
No 111
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.60 E-value=0.0017 Score=59.32 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG--~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
.-.+|||||-|.+|++||.+.....| .|.++++..++.. |.+||||.|...+.+..++-++.|--..|++.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N---GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN---GQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC---CcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 34799999999999999998888765 3456666666633 78889999999999999999988766666653
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.46 E-value=0.0026 Score=58.80 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=53.8
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
.|-|.||.+++|.++++.||...|.|.+++|......-.--...-.|||.|.+..++..|- .|.++.+.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 8899999999999999999999999999998874311000011128999999999998885 5555554443
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.45 E-value=0.07 Score=49.45 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+.+.+.|-+|... +.-+-|-.||..||.|..|+++..+. | -|.||..+....+.|+..||+..+.+.-+.+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3789999999876 46667899999999999999998874 3 8999999999999999999998776655443
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.44 E-value=0.012 Score=41.16 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=45.7
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCC---CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~f---G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L 197 (214)
.+|+|.++.. .+.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 4899999965 7788999999988 234688999996 6999999999999999875
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.33 E-value=0.012 Score=44.76 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEE-------------EeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-------------LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vr-------------l~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
.+.|.|=+.|.. ....|.+.|++||.|.+.. ..... . +--|.|+++.+|++|| .-|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-----N----Wi~I~Y~~~~~A~rAL-~~N 74 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-----N----WIHITYDNPLSAQRAL-QKN 74 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-----T----EEEEEESSHHHHHHHH-TTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-----C----EEEEECCCHHHHHHHH-HhC
Confidence 567888899998 5566778999999998875 22221 2 9999999999999999 456
Q ss_pred CCeeccc
Q 028098 199 VQSKVVA 205 (214)
Q Consensus 199 G~~l~~~ 205 (214)
|..|.+.
T Consensus 75 G~i~~g~ 81 (100)
T PF05172_consen 75 GTIFSGS 81 (100)
T ss_dssp TEEETTC
T ss_pred CeEEcCc
Confidence 6555543
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.22 E-value=0.012 Score=47.64 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 148 EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 148 eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+|.+.|.+||.+.=||++.+ .-+|.|.+-++|.+|+ .|+|.+++++.++++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIR 102 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECCEEEEEE
Confidence 67788999999988888876 4799999999999998 789999998887764
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.04 E-value=0.016 Score=55.48 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHhhcCCCCeEEEEEeeC-CCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 149 VAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~-k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
++.-+..||.|..|.++.. ...++ .--.|.-||+|.+.++++.|+++|+|.++.++-+
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 4455778999999999887 32221 1123578999999999999999999999987754
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.02 E-value=0.0048 Score=54.18 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=59.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC-C-----CCCCCCcc---cEEEEEecCHHHHHHHHHHhCCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-S-----RHPGGDPL---ILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k-~-----~~~gG~~k---g~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
.-.||+.++|+...-.-|++||++||.|-.|.|.... . ++.+|..+ -=+.|+|.+...|....+.|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4689999999999999999999999999999887654 2 11112211 2258999999999999999999988
Q ss_pred ccc
Q 028098 203 VVA 205 (214)
Q Consensus 203 ~~~ 205 (214)
.++
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 765
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.01 E-value=0.0064 Score=56.88 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=51.0
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC-eeccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ-SKVVAPNQY 209 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~-~l~~~P~~~ 209 (214)
++||++||.+.++..+|..+|...---..-.++.+. | |+||++.+...|.+|++.|+|. ++.++++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-----g----yafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-----G----YAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-----c----eeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 579999999999999999999865111111122221 3 9999999999999999999984 666766543
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.85 E-value=0.02 Score=52.29 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCCEEEEcCCC----CcCC-------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 028098 131 ASSTLFVEGLP----SDCS-------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 131 ~s~tLfVgnLp----~~~t-------e~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
..+||.+.|+= +..+ +++|.+-+++||.|..|.|... |+.| .+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCc----eeEEEeCChHHHHHHHHHhcC
Confidence 46899999982 2333 4566677999999999865433 3445 999999999999999999999
Q ss_pred Ceeccccc
Q 028098 200 QSKVVAPN 207 (214)
Q Consensus 200 ~~l~~~P~ 207 (214)
..+.++-+
T Consensus 337 R~fdgRql 344 (382)
T KOG1548|consen 337 RWFDGRQL 344 (382)
T ss_pred eeecceEE
Confidence 98887754
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.74 E-value=0.017 Score=53.50 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=53.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeE---EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYK---EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~---~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
...|-+.+||+..+.|+|.++|..|..-+ -|.++.+.. |+|.|-|||+|.+.+.|.+|....+..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 67899999999999999999999986532 377777765 555569999999999999998765543
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.60 E-value=0.0028 Score=63.58 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-.-+ .+-. -++||.|.+...+-.|+..+.+..|.-.+.++
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-----a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-----AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-----chhhhhhhccccCcccchhhcCCccccCcccc
Confidence 57999999999999999999999999999999886664 2111 29999999999999999999988776666655
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
--|
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 443
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=0.001 Score=66.19 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=53.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
..++||.||+..+.+++|...|.+++.+..+++..-+.+ ++.+|.|||+|..+++|.+|+.-..+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~---~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE---KRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc---cccccceeeEeecCCchhhhhhhhhh
Confidence 368999999999999999999999999988877633221 56667999999999999999965443
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.34 E-value=0.021 Score=57.59 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=58.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.++.+||++|...+....|...|..||.|..+.+-.... |++|.|++...|++|++.|-|..|.+-+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~---------yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP---------YAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc---------ceeeecccCccchhhHHHHhcCcCCCCC
Confidence 378999999999999999999999999998876654432 9999999999999999999999886543
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.32 E-value=0.019 Score=50.54 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L 197 (214)
...|||.||+.-++.+.|..-|+.||.|....++.|.. |++.+=++|+|.....|.+|+..+
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHh
Confidence 36899999999999999999999999998766655553 334447899999999999999876
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.26 E-value=0.0068 Score=53.13 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=44.8
Q ss_pred HHHhhc-CCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 149 VAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 149 L~~lF~-~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
|...|+ +||+|+++.+-.+..-|-.| =++|.|...++|++|++.|||--+.++|+..
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~G----NVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVG----NVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhh----hhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 333344 78999988665555444334 7999999999999999999999999999864
No 127
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.00 E-value=0.021 Score=55.38 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCC-CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~f-G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
..++.|+|.||-.-.|.-+|+.|+..- |.|.+. ..|+- |.-|||.|.+.++|.+-+.+|||..-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI-------KShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI-------KSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh-------hcceeEecccHHHHHHHHHHHhcccc
Confidence 468999999999999999999999954 445444 44441 11699999999999999999999753
No 128
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.44 E-value=0.076 Score=51.29 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=53.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcC--CCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH-------hCCCe
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRP--FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA-------LQVQS 201 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~--fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~-------LnG~~ 201 (214)
..+.|.+.-+|.++-+|+++.||+. +-.+.+|.+-.+.. =||.|++..+|+.|... ++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 4688999999999999999999985 78888998877763 49999999999999865 55655
Q ss_pred eccc
Q 028098 202 KVVA 205 (214)
Q Consensus 202 l~~~ 205 (214)
|+-+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 5543
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.32 E-value=0.063 Score=44.63 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcC-CCCe---EEEEEeeCCCCCCCCCc-ccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRP-FVGY---KEVRLVSKESRHPGGDP-LILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~-fG~i---~~vrl~~~k~~~~gG~~-kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
..+|.|++||++.||+++.+.+++ ++.- ..+.-..... +-..+ -.-|||.|.+.+++..-++.++|+.+.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~--~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK--SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S--SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc--cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 569999999999999999998887 6655 3443112210 00111 14699999999999999999999877543
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.95 E-value=0.046 Score=49.61 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCcCCHHHHH---HhhcCCCCeEEEEEeeCCC--CCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKES--RHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~---~lF~~fG~i~~vrl~~~k~--~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.+-+||-+|+.....+++. +.|.+||.|..|.+-.+.+ ...++ .. -++|.|...++|..||...+|+.+.++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4678899999887666654 6899999999998777652 22222 11 2699999999999999999999999988
Q ss_pred cccccCCC
Q 028098 207 NQYQSGST 214 (214)
Q Consensus 207 ~~~~~~~~ 214 (214)
++...|.|
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 76665543
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.90 E-value=0.054 Score=53.56 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 126 ~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~-vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
+.|......|||..||..+++.++.++|...-.|++ +.|..... ++..+-|||+|..++++.+|+..
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhc
Confidence 455567899999999999999999999998877776 55544443 23334899999998888888754
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.83 E-value=0.67 Score=35.81 Aligned_cols=67 Identities=10% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
+..+.+...|.-++.++|..+.+++- .|..+||+++....+ =.+.+.|.+.+.|.+-.+.+||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnr-----ymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNR-----YMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCce-----EEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34555555666667777877777764 456789999863322 27788999999999999999998764
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.42 E-value=0.035 Score=55.80 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=60.0
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee--ccccccccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK--VVAPNQYQS 211 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l--~~~P~~~~~ 211 (214)
+.++.|.+-+.+...|..||+.||.|.+.+.+++-. .|.|+|.+.+.|..|+++|+|..+ .+.|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 445556677788999999999999999999988864 899999999999999999999765 567777766
Q ss_pred CCC
Q 028098 212 GST 214 (214)
Q Consensus 212 ~~~ 214 (214)
.+|
T Consensus 371 ak~ 373 (1007)
T KOG4574|consen 371 AKT 373 (1007)
T ss_pred ccc
Confidence 553
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.14 E-value=0.3 Score=48.04 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
.-++||+|+...|..+-++.+...+|-|..+.. .+ |+|++|....-+..|+..|+-..+
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~~----------fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--DK----------FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhh--hh----------hcccchhhHHHHHHHHHHhcccCC
Confidence 679999999999999999999999998766532 21 899999999999999987664444
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.84 E-value=0.59 Score=42.22 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 146 RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 146 e~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
++++++-+.+||.|..|.|....+- + -+-..--||+|+..++|.+|+--|||..+.++-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~-p-~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ-P-EDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC-c-cchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 4567788999999998877665411 0 01123579999999999999999999999887543
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.21 E-value=0.48 Score=39.80 Aligned_cols=59 Identities=19% Similarity=0.066 Sum_probs=44.8
Q ss_pred CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeecccccccccC
Q 028098 145 SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VQSKVVAPNQYQSG 212 (214)
Q Consensus 145 te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln--G~~l~~~P~~~~~~ 212 (214)
..+.|+++|..++.+.....+..-. =..|.|.+.+.|+.|...|+ ++.+.+..+++-+|
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 4578999999999998887766642 58999999999999999999 99998888777665
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.78 E-value=0.34 Score=43.33 Aligned_cols=73 Identities=18% Similarity=0.022 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
..+++|++++.+++.+.++..+|...|....+++...... ...|+++.|.|...+.+..|+.....+.+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---LSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccc---cccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 4689999999999999999999999998888877765421 455669999999999999999765554544443
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.47 E-value=1 Score=36.75 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCcC-CHHH---HHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 028098 132 SSTLFVEGLPSDC-SRRE---VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 132 s~tLfVgnLp~~~-te~e---L~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
-.||.|.=|..++ ..+| +..-.+.||.|.+|.+.-.. -|.|.|.+..+|=.|+.+++-
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcC
Confidence 5688898766654 2334 44556789999999764443 699999999999999999875
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.35 E-value=1.4 Score=41.82 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC-CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f-G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
++.|+|=-+|..++-.||..+...| -.|.++++++|....+= ...+.|.+.++|..-.+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry-----mvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY-----MVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE-----EEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999998876 55778999998633222 6799999999999999999998765
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.65 E-value=2.4 Score=29.83 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=43.0
Q ss_pred cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 143 DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 143 ~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
.++-++++..+..|.- .+|..+++ | =||.|.+..+|++|....+|..+...-|+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4677899999999864 35556653 3 59999999999999999999988766544
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.59 E-value=2.4 Score=29.89 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=35.2
Q ss_pred CcCCHHHHHHhhcCCCCeE-----EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 142 SDCSRREVAHIFRPFVGYK-----EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 142 ~~~te~eL~~lF~~fG~i~-----~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++..+|..++..-+.|. .+++..+ |+||+-.. +.|+.++++|++..+.++++.+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 4578888998888876654 5666555 89999875 58899999999999999988764
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=84.58 E-value=0.12 Score=45.57 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCCCCC---CCCcccccccccccccccCCCCCCCccccchhhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCc
Q 028098 27 RTDYDV---PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRI 99 (214)
Q Consensus 27 ~~~~~~---~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~--~~~~~~~-~~~r~~~gg~~G~~~~~~~~ 99 (214)
..||-| ++++||+|-++--.|+ .|+++-.+|||.++=+ ..+++ |+||.+- +..|+|. +|+|.++.++.+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRT--gKSkgygfVSf~~pad~~rAmr-em~gkyVgsrpi 262 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRT--GKSKGYGFVSFRDPADYVRAMR-EMNGKYVGSRPI 262 (290)
T ss_pred cccceeecccccccccHHHHHHHHH-hccchhhccccccccc--cccccceeeeecCHHHHHHHHH-hhcccccccchh
Confidence 347767 7899999998877665 4899999999986655 57776 5688875 6668998 999988877653
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.75 E-value=0.69 Score=44.05 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=54.3
Q ss_pred CCEEEEcCCCCcC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~~-te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+.|-+.-.|+.. +.++|..-|.+||.|..|.+-.... -|.|+|.+..+|-.|. +.++..|+.+++++-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchh-ccccceecCceeEEE
Confidence 4555565556553 6788999999999999886644411 5899999999996664 688889999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
|-
T Consensus 442 wh 443 (526)
T KOG2135|consen 442 WH 443 (526)
T ss_pred Ee
Confidence 64
No 144
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.20 E-value=2.3 Score=38.55 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
..|=|-++|+... .-|..+|++||.|++.....+ |. |-.|.|.++-+|.+||.. ||..|.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gN---wMhirYssr~~A~KALsk-ng~ii~ 257 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GN---WMHIRYSSRTHAQKALSK-NGTIID 257 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------Cc---eEEEEecchhHHHHhhhh-cCeeec
Confidence 4555667777644 456689999999987765522 32 999999999999999953 444443
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.19 E-value=3.5 Score=39.96 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe
Q 028098 156 FVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQS 201 (214)
Q Consensus 156 fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~ 201 (214)
.|...-+.|+.|- .++ .+|||||.|.+++.+..+.++.||.+
T Consensus 413 ~gtYDFlYLPiDF~nkc----NvGYAFINm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKC----NVGYAFINMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cCccceEEecccccccc----ccceeEEeecCHHHHHHHHHHHcCCc
Confidence 4566667777775 333 34599999999999999999999975
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.64 E-value=6.4 Score=38.60 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCCCEEEEcCCCCc-CCHHHHHHhhcCC----CCeEEEEEeeCC-CC------CCCC-----------------------
Q 028098 130 DASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKE-SR------HPGG----------------------- 174 (214)
Q Consensus 130 ~~s~tLfVgnLp~~-~te~eL~~lF~~f----G~i~~vrl~~~k-~~------~~gG----------------------- 174 (214)
..++.|-|-|+.|+ +..++|.-+|+.| |.|.+|.|.... ++ +--|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45789999999997 7889999999887 578888765332 00 0001
Q ss_pred -------------Ccc-cEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 175 -------------DPL-ILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 175 -------------~~k-g~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
+.+ =||.|+|.+.+.|.+.++.++|..+--.-+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 111 379999999999999999999988765443
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=72.63 E-value=1.1 Score=38.93 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCEEEEcC----CCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 132 SSTLFVEG----LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgn----Lp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
-.+++.|+ |...++++.+..+|+.-+.+..+|+..+.. |++.-+.||.+.-....-.|+...++..+.-+++
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 45788888 888899999999999999999999998875 3333489999998888888998888888877776
Q ss_pred cc
Q 028098 208 QY 209 (214)
Q Consensus 208 ~~ 209 (214)
.|
T Consensus 156 ~~ 157 (267)
T KOG4454|consen 156 TI 157 (267)
T ss_pred cc
Confidence 65
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=69.41 E-value=1.1 Score=42.04 Aligned_cols=65 Identities=17% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
..||+|++|+..+...++.++|..+|+|...++..+... .+|-|+|....+...|+ .++|..+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s-------~~c~~sf~~qts~~hal-r~~gre~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS-------SSCSHSFRKQTSSKHAL-RSHGRERKR 215 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC-------cchhhhHhhhhhHHHHH-Hhcchhhhh
Confidence 478999999999999999999999999988877666422 27889999888888887 456655543
No 149
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.33 E-value=5.3 Score=31.03 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=28.8
Q ss_pred EEEEcCCCCc---------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHH
Q 028098 134 TLFVEGLPSD---------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190 (214)
Q Consensus 134 tLfVgnLp~~---------~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A 190 (214)
++.|-|++.. .+.++|++.|+.|..++ |+.+.++..|.+ ++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g-----~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTG-----FAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEE-----EEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcE-----EEEEEECCChHH
Confidence 6667777543 46688999999998874 666677655554 999999875443
No 150
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=64.13 E-value=14 Score=29.76 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=85.8
Q ss_pred CCCcccccccccccccccCCCCCCCccccchhhh-hhccCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCccccCCCC-C
Q 028098 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDR-YLRSAQ--ISSYSGGQ-SARHMSGGMPSRPVDDPRIVGIGGMD-P 107 (214)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr-~~~~~~--~~~~~~~~-~~r~~~gg~~G~~~~~~~~~~~gg~~-~ 107 (214)
.+..+++.--+++.|.. +.....+.-.+|+ -.++.+ +..|...+ +-.++. .+++..+.++.+...-... .
T Consensus 122 nL~~~~~~~~l~~~F~~----~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~-~~~~~~~~~~~~~v~~~~~~~ 196 (306)
T COG0724 122 NLPYDVTEEDLRELFKK----FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIE-ELNGKELEGRPLRVQKAQPAS 196 (306)
T ss_pred CCCCCCCHHHHHHHHHh----cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHH-HcCCCeECCceeEeecccccc
Confidence 34455555555554433 2222333333454 224444 45666653 334555 7777777776654321100 0
Q ss_pred CCCCCCC---CCCCCCC-CCCCCCCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEE
Q 028098 108 GPSAKDR---ALGLGGG-RSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVD 183 (214)
Q Consensus 108 ~~~~~~r---~~g~~~~-~p~~~~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVe 183 (214)
....... ....... .............+++.+++..++..++..+|..++.+..+.+...... ..+..+.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 273 (306)
T COG0724 197 QPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVG 273 (306)
T ss_pred ccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccc
Confidence 0000000 0000000 0111222335789999999999999999999999999977777666521 1233355566
Q ss_pred ecCHHHHHHHHHHhCCCeecc
Q 028098 184 FVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 184 F~~~~~A~~Al~~LnG~~l~~ 204 (214)
+.....+..++...+......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (306)
T COG0724 274 NEASKDALESNSRGNKKKILG 294 (306)
T ss_pred hhHHHhhhhhhccccceeecc
Confidence 666666655555544444433
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.81 E-value=20 Score=33.92 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i-~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
...|=|-++|...-.+||..+|+.|+.- .+|.++.+. -+|-.|.+...|..|| .|.-..++.+|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaL-t~kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEAL-TLKHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHh-hccCceEEeeeh
Confidence 4678899999999999999999999663 245555553 7999999999999998 445456666664
No 152
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=61.93 E-value=1.3 Score=42.98 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
.++|||.|++++++-++|..+++.+-.+..+-+-... .+.. +-+..|.|.---....|+.+||+..+.-.++
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~----~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNF----ERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHH----HHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4779999999999999999999999888877665543 1111 1167899999889999999999988876654
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.97 E-value=7.9 Score=35.01 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=47.4
Q ss_pred CCCCCCEEEEcCCCCc------------CCHHHHHHhhcCCCCeEEEEEeeCC-------CCCCCCCcccEEE-------
Q 028098 128 PPDASSTLFVEGLPSD------------CSRREVAHIFRPFVGYKEVRLVSKE-------SRHPGGDPLILCF------- 181 (214)
Q Consensus 128 p~~~s~tLfVgnLp~~------------~te~eL~~lF~~fG~i~~vrl~~~k-------~~~~gG~~kg~aF------- 181 (214)
|..-..||++.+||.. -+++-|...|..||.|..|.|+.-. ++.+|=.-+||+|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3333458888888731 4678899999999999998876432 1111112334543
Q ss_pred --EEecCHHHHHHHHHHhCCCee
Q 028098 182 --VDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 182 --VeF~~~~~A~~Al~~LnG~~l 202 (214)
|+|..--.-..|+.+|.|.++
T Consensus 225 ayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchH
Confidence 455555556677788877654
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=56.06 E-value=0.71 Score=43.64 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
.++++-|.|+|+...++-|..|..+||.+..|..+......- .--|+|.+.+.+..||..|||..+.-.-.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 367899999999999999999999999999887766552110 33578999999999999999987765433
No 155
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=46.50 E-value=20 Score=34.80 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=46.7
Q ss_pred EcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccCCC
Q 028098 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSGST 214 (214)
Q Consensus 137 VgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~~~ 214 (214)
+.+.|..+-...+...+.... .......+.-+.+ .++++.|++++.+.+|+..++|....+.+++.+-|++
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~--~~~~s~tk~~~~~-----~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKIL--RDVKSKTKLPKMP-----KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred eeccCchhhhhHHHhhhhhhc--ccccccCCCCCCC-----CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 445566666655554444321 1122222222222 2999999999999999999999999999888877653
No 156
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.37 E-value=11 Score=33.17 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEE
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV 162 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~v 162 (214)
..+||+-|+|..+|++.|..+.+++|.+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 6799999999999999999999999876554
No 157
>PF14893 PNMA: PNMA
Probab=40.39 E-value=24 Score=32.35 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=20.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRP 155 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~ 155 (214)
-+.|.|.++|.+|+++||++.++.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 568999999999999998877653
No 158
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.44 E-value=35 Score=31.04 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~ 189 (214)
.+-|+|+||+.++.-.||+.-+.+-+.+ -.+|..+ +|.+ -||..|-+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--g~~~-----k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--GHFG-----KCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee--cCCc-----ceeEecCCccC
Confidence 4569999999999999999988887654 2233332 3333 69999987643
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.91 E-value=19 Score=30.45 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCcC-CH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSDC-SR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~-te----~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
.+++++.+++.++ ++ .....+|.+|-+....++++.. + +--|.|.+++.|+.|.-.++.+.+.+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-----r----rvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-----R----RVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-----c----eeEEeccChhHHHHHHHHhhhcccCCC
Confidence 3578888888764 22 2244677777665555555543 1 567899999999999999998888776
No 160
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=34.97 E-value=91 Score=29.83 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCCCc-CCHHHHHHhhcCC----CCeEEEEEe
Q 028098 130 DASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLV 165 (214)
Q Consensus 130 ~~s~tLfVgnLp~~-~te~eL~~lF~~f----G~i~~vrl~ 165 (214)
++++.|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 35789999999996 7888898888876 455556543
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=30.48 E-value=63 Score=29.32 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCC----CCCcccEEEEEecCHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHP----GGDPLILCFVDFVSPAHAATA 193 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~----gG~~kg~aFVeF~~~~~A~~A 193 (214)
++.|...|+..+++-.++..-|-+||.|++|.|+.+..+.. --+.+-.+.+.|-+++.+..-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 56788999999999999999999999999999998761000 001223788999998876543
No 162
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.48 E-value=1.7e+02 Score=18.92 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.0
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCH----HHHHHHHHH
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP----AHAATAMDA 196 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~----~~A~~Al~~ 196 (214)
||.|.|+.-.--...|+..+...-+|.++.+-... + -.-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----K----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----C----EEEEEEecCCCCHHHHHHHHHH
Confidence 67888888888888899999999999998876664 2 688888755 455555544
No 163
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.31 E-value=1.2e+02 Score=29.21 Aligned_cols=68 Identities=21% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCCCCCCEEEEcCCCCcCCH---HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 127 LPPDASSTLFVEGLPSDCSR---REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 127 ~p~~~s~tLfVgnLp~~~te---~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
+||.+..-=+||||+.-... ..+..+=++||.|..++|-.. -.|.-.+.+.|++|+ .-|+..+.
T Consensus 27 lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~------------~~Vviss~~~akE~l-~~~d~~fa 93 (489)
T KOG0156|consen 27 LPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV------------PVVVISSYEAAKEVL-VKQDLEFA 93 (489)
T ss_pred CCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc------------eEEEECCHHHHHHHH-HhCCcccc
Confidence 44444445568888865444 456666678999998887333 367778888888888 55688899
Q ss_pred cccc
Q 028098 204 VAPN 207 (214)
Q Consensus 204 ~~P~ 207 (214)
++|.
T Consensus 94 ~Rp~ 97 (489)
T KOG0156|consen 94 DRPD 97 (489)
T ss_pred CCCC
Confidence 9985
No 164
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.61 E-value=46 Score=20.72 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=10.5
Q ss_pred CcCCHHHHHHhhcCCCC
Q 028098 142 SDCSRREVAHIFRPFVG 158 (214)
Q Consensus 142 ~~~te~eL~~lF~~fG~ 158 (214)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999988653
No 165
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.91 E-value=1.7e+02 Score=21.37 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=38.8
Q ss_pred EEcCCCCcCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh
Q 028098 136 FVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (214)
Q Consensus 136 fVgnLp~~~te~eL~~lF~~f--G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L 197 (214)
|+=-.+...+..+|+..++.+ -.|..|+...-+.+.. =|||.+.....|......|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K------KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK------KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE------EEEEEeCCCCcHHHHHHhh
Confidence 344567888999988888874 4567777666553221 4999999888887765443
No 166
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.88 E-value=2.7e+02 Score=18.90 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 147 REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 147 ~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
.+|.++..++| +..+++.-.- .|+ +.|+-+.+.+.++++++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG---~G~----~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG---GGP----TVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS---SSS----EEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC---CCC----eEEEEECCHHHHHHHHHHHH
Confidence 34566677788 3344443221 123 89999999999999988764
No 167
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.96 E-value=28 Score=26.67 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=8.7
Q ss_pred CCEEEEcCCC
Q 028098 132 SSTLFVEGLP 141 (214)
Q Consensus 132 s~tLfVgnLp 141 (214)
...||||++|
T Consensus 92 ~~~lyvGG~p 101 (131)
T PF00054_consen 92 DGPLYVGGLP 101 (131)
T ss_dssp CSEEEESSSS
T ss_pred ccCEEEccCC
Confidence 4579999999
No 168
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.78 E-value=1.4e+02 Score=27.93 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeE-EEEEe-eCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~-~vrl~-~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
-..+.|.+||...++++|.+-..+|-.=. -..+. .+.+..+ ..-+.+||.|..+++...=.+.++|+++...+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~--~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRN--HKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchh--hhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 46788999999999999988777764321 12222 2221100 112489999999999888778899998876554
No 169
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.58 E-value=1.1e+02 Score=21.22 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCCee
Q 028098 179 LCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 179 ~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
..+|.|.+..+|-+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 789999999999999998875533
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.12 E-value=68 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhh
Q 028098 132 SSTLFVEGLPSDCSRREVAHIF 153 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF 153 (214)
.++|-|.|||....+++|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 6799999999999999998643
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.09 E-value=2.3e+02 Score=20.35 Aligned_cols=56 Identities=7% Similarity=0.090 Sum_probs=38.5
Q ss_pred EEEcCCCCcCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH
Q 028098 135 LFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (214)
Q Consensus 135 LfVgnLp~~~te~eL~~lF~~f--G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~ 196 (214)
-|+=.++.+.+..||+..++.+ -.|..|+...-+.... =|||.+..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K------KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK------KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce------EEEEEECCCCcHHHHHHh
Confidence 4455678889999999888764 4566776665542211 599999888777765443
Done!