Query 028098
Match_columns 214
No_of_seqs 269 out of 1426
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-21 1.5E-25 142.8 10.0 79 132-213 19-97 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 6.5E-20 2.2E-24 139.3 10.6 78 132-212 6-83 (110)
3 2e5h_A Zinc finger CCHC-type a 99.8 8.2E-20 2.8E-24 132.8 10.6 80 131-213 15-94 (94)
4 1x4e_A RNA binding motif, sing 99.8 4.5E-20 1.5E-24 132.0 8.9 81 130-213 3-83 (85)
5 2cqc_A Arginine/serine-rich sp 99.8 1.1E-19 3.6E-24 132.2 10.4 81 130-213 13-93 (95)
6 2la6_A RNA-binding protein FUS 99.8 1.3E-19 4.5E-24 133.4 10.8 83 127-212 8-98 (99)
7 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-19 6E-24 136.2 11.6 80 131-213 24-103 (115)
8 4f25_A Polyadenylate-binding p 99.8 5.7E-20 1.9E-24 139.7 8.8 76 132-212 5-80 (115)
9 2dnz_A Probable RNA-binding pr 99.8 1.5E-19 5.3E-24 131.5 10.8 80 131-213 4-83 (95)
10 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.8E-20 3E-24 130.6 8.9 80 131-213 5-84 (87)
11 2ywk_A Putative RNA-binding pr 99.8 1.1E-19 3.7E-24 132.3 9.2 80 130-213 14-93 (95)
12 2khc_A Testis-specific RNP-typ 99.8 4.2E-19 1.4E-23 134.4 12.7 80 130-212 38-117 (118)
13 2cq0_A Eukaryotic translation 99.8 2.3E-19 7.9E-24 132.8 11.1 80 131-213 14-93 (103)
14 1x5u_A Splicing factor 3B subu 99.8 2.3E-19 7.9E-24 133.1 10.7 81 130-213 13-93 (105)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.9E-24 129.0 9.0 80 131-213 6-85 (85)
16 2dnh_A Bruno-like 5, RNA bindi 99.8 4.8E-19 1.6E-23 131.3 11.9 79 131-213 14-95 (105)
17 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-19 5.1E-24 134.3 8.9 81 130-213 11-94 (106)
18 1x4a_A Splicing factor, argini 99.8 6E-19 2E-23 132.0 12.2 78 130-213 20-97 (109)
19 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.6E-24 132.9 9.6 80 131-213 12-91 (103)
20 2lkz_A RNA-binding protein 5; 99.8 4.9E-20 1.7E-24 136.9 5.7 79 132-213 9-93 (95)
21 3md1_A Nuclear and cytoplasmic 99.8 3.9E-19 1.3E-23 126.1 10.1 79 132-213 1-79 (83)
22 2d9p_A Polyadenylate-binding p 99.8 5.6E-19 1.9E-23 130.7 11.2 80 129-213 12-91 (103)
23 2lxi_A RNA-binding protein 10; 99.8 2.5E-20 8.5E-25 136.5 3.8 79 132-213 1-81 (91)
24 2dgo_A Cytotoxic granule-assoc 99.8 5.2E-19 1.8E-23 133.3 11.0 81 130-213 13-93 (115)
25 2dgv_A HnRNP M, heterogeneous 99.8 5.8E-19 2E-23 127.7 10.8 78 131-213 7-84 (92)
26 2dgs_A DAZ-associated protein 99.8 6.8E-19 2.3E-23 129.4 11.3 79 131-213 9-87 (99)
27 2div_A TRNA selenocysteine ass 99.8 3E-19 1E-23 131.1 9.3 80 131-213 8-92 (99)
28 2do4_A Squamous cell carcinoma 99.8 6.6E-19 2.3E-23 129.7 11.1 79 131-213 16-94 (100)
29 2cph_A RNA binding motif prote 99.8 5.9E-19 2E-23 131.1 10.9 80 131-213 14-95 (107)
30 2x1f_A MRNA 3'-END-processing 99.8 4E-19 1.4E-23 130.1 9.7 79 132-213 2-80 (96)
31 2cq3_A RNA-binding protein 9; 99.8 1E-18 3.5E-23 129.3 12.0 78 131-213 14-91 (103)
32 2dng_A Eukaryotic translation 99.8 6.5E-19 2.2E-23 130.5 10.8 82 127-213 10-91 (103)
33 2cpe_A RNA-binding protein EWS 99.8 6E-19 2E-23 132.6 10.7 80 131-213 14-101 (113)
34 1x4h_A RNA-binding protein 28; 99.8 6.3E-19 2.1E-23 131.7 10.7 81 130-213 13-99 (111)
35 2do0_A HnRNP M, heterogeneous 99.8 1E-18 3.5E-23 131.4 11.8 78 131-212 14-91 (114)
36 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.8E-19 2E-23 130.6 10.2 79 130-213 13-91 (103)
37 1whw_A Hypothetical protein ri 99.8 4.3E-19 1.5E-23 130.3 9.3 80 131-213 7-86 (99)
38 2kxn_B Transformer-2 protein h 99.8 6.3E-19 2.2E-23 137.2 10.7 81 130-213 44-124 (129)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.3E-19 1.1E-23 131.5 8.4 80 131-213 11-90 (102)
40 3ns6_A Eukaryotic translation 99.8 1.6E-19 5.5E-24 134.0 6.6 78 132-212 6-90 (100)
41 1x5t_A Splicing factor 3B subu 99.8 2.8E-19 9.6E-24 130.4 7.8 80 131-213 4-84 (96)
42 3p5t_L Cleavage and polyadenyl 99.8 1.7E-19 5.8E-24 131.0 6.5 77 133-212 2-80 (90)
43 1x5s_A Cold-inducible RNA-bind 99.8 3.7E-19 1.3E-23 131.3 8.3 79 131-212 11-89 (102)
44 2dhg_A TRNA selenocysteine ass 99.8 9.3E-19 3.2E-23 129.6 10.3 80 130-213 7-88 (104)
45 3ulh_A THO complex subunit 4; 99.8 6.9E-19 2.3E-23 130.9 9.6 79 130-212 27-105 (107)
46 1p27_B RNA-binding protein 8A; 99.8 5E-19 1.7E-23 131.4 8.8 79 131-212 22-100 (106)
47 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-18 3.7E-23 129.5 10.3 83 127-213 10-92 (104)
48 2cpi_A CCR4-NOT transcription 99.8 7.7E-19 2.6E-23 132.5 9.5 82 132-213 15-99 (111)
49 2cpf_A RNA binding motif prote 99.8 5E-19 1.7E-23 129.7 8.3 83 131-213 4-86 (98)
50 2jrs_A RNA-binding protein 39; 99.8 1.3E-18 4.6E-23 131.0 10.5 81 130-213 24-104 (108)
51 2krb_A Eukaryotic translation 99.8 4.3E-19 1.5E-23 126.3 7.3 73 132-209 1-80 (81)
52 1oo0_B CG8781-PA, drosophila Y 99.8 7.5E-19 2.5E-23 131.5 8.7 79 131-212 25-103 (110)
53 2dh8_A DAZ-associated protein 99.8 1.3E-18 4.6E-23 129.1 9.9 79 131-213 15-93 (105)
54 2cqp_A RNA-binding protein 12; 99.8 6.7E-19 2.3E-23 129.0 8.1 80 131-213 14-93 (98)
55 2fy1_A RNA-binding motif prote 99.8 1.2E-18 4E-23 132.9 9.6 80 130-213 5-84 (116)
56 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 5.6E-23 130.6 10.0 80 128-213 4-83 (115)
57 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-18 4.6E-23 132.1 9.4 74 131-213 15-90 (105)
58 2cqd_A RNA-binding region cont 99.8 2.3E-18 7.8E-23 130.2 10.4 78 131-212 16-93 (116)
59 3ex7_B RNA-binding protein 8A; 99.8 1.5E-18 5.2E-23 132.8 9.2 79 131-212 21-99 (126)
60 2ek1_A RNA-binding protein 12; 99.8 7.3E-19 2.5E-23 127.9 6.9 79 132-213 15-93 (95)
61 2cq1_A PTB-like protein L; RRM 99.8 4.9E-18 1.7E-22 127.5 11.5 74 131-213 14-89 (101)
62 1s79_A Lupus LA protein; RRM, 99.8 9.7E-19 3.3E-23 131.4 7.6 75 132-211 11-85 (103)
63 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-18 3.7E-23 129.2 7.6 80 129-213 16-96 (100)
64 1p1t_A Cleavage stimulation fa 99.8 4.9E-19 1.7E-23 130.9 5.6 80 131-213 7-86 (104)
65 3n9u_C Cleavage and polyadenyl 99.8 1.6E-18 5.4E-23 139.3 9.0 79 131-212 54-134 (156)
66 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.5E-23 135.2 8.2 81 130-213 40-120 (139)
67 3ucg_A Polyadenylate-binding p 99.8 1.8E-18 6.3E-23 124.2 8.4 78 132-213 6-83 (89)
68 2err_A Ataxin-2-binding protei 99.8 1.9E-18 6.5E-23 130.1 8.8 78 131-213 28-105 (109)
69 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.5E-18 8.4E-23 136.5 9.9 80 130-212 37-116 (156)
70 3s7r_A Heterogeneous nuclear r 99.8 2.2E-18 7.7E-23 123.6 8.7 77 131-211 10-86 (87)
71 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.7E-23 131.1 7.9 75 130-213 13-90 (102)
72 4a8x_A RNA-binding protein wit 99.8 1.4E-18 4.6E-23 124.4 7.4 79 132-212 4-82 (88)
73 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-18 1.2E-22 132.2 10.2 78 131-211 62-139 (140)
74 1x5o_A RNA binding motif, sing 99.8 1.8E-17 6E-22 124.7 13.7 75 131-209 24-98 (114)
75 2m2b_A RNA-binding protein 10; 99.8 1.4E-18 4.7E-23 134.7 7.6 79 131-213 22-106 (131)
76 1wg5_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 127.4 9.3 76 131-211 14-90 (104)
77 2nlw_A Eukaryotic translation 99.7 1.6E-18 5.4E-23 129.5 7.2 78 131-213 14-98 (105)
78 2a3j_A U1 small nuclear ribonu 99.7 2.7E-18 9.3E-23 134.0 8.7 77 131-213 28-108 (127)
79 1wez_A HnRNP H', FTP-3, hetero 99.7 2.6E-18 8.7E-23 128.5 8.2 75 131-211 14-88 (102)
80 2mss_A Protein (musashi1); RNA 99.7 1.3E-18 4.6E-23 121.5 6.2 75 134-212 1-75 (75)
81 3r27_A HnRNP L, heterogeneous 99.7 2.7E-18 9.3E-23 129.4 8.3 74 131-213 20-95 (100)
82 1wel_A RNA-binding protein 12; 99.7 1.6E-18 5.6E-23 132.9 7.2 80 128-211 21-100 (124)
83 2db1_A Heterogeneous nuclear r 99.7 2.3E-18 7.7E-23 131.7 7.9 77 130-211 15-94 (118)
84 2cq4_A RNA binding motif prote 99.7 2.6E-18 9E-23 129.5 7.9 77 131-211 24-100 (114)
85 2dgw_A Probable RNA-binding pr 99.7 5.1E-18 1.7E-22 122.9 8.7 76 131-212 9-84 (91)
86 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.4E-22 127.1 11.9 79 130-212 33-111 (124)
87 2ytc_A PRE-mRNA-splicing facto 99.7 1E-17 3.5E-22 119.5 9.7 74 131-213 11-85 (85)
88 2dgx_A KIAA0430 protein; RRM d 99.7 5.9E-18 2E-22 124.4 8.3 77 131-213 8-88 (96)
89 1wex_A Hypothetical protein (r 99.7 1.2E-17 4.1E-22 125.9 10.2 74 131-213 14-89 (104)
90 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-17 5.2E-22 122.9 10.5 77 131-212 14-90 (103)
91 2lea_A Serine/arginine-rich sp 99.7 1.7E-18 5.9E-23 135.6 5.6 80 131-213 46-125 (135)
92 2cpy_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 129.6 7.0 78 130-212 13-91 (114)
93 1x4c_A Splicing factor, argini 99.7 1.3E-17 4.5E-22 125.0 10.1 73 130-212 13-90 (108)
94 1why_A Hypothetical protein ri 99.7 2.1E-17 7.1E-22 121.1 11.0 74 131-213 16-91 (97)
95 4f02_A Polyadenylate-binding p 99.7 8.1E-18 2.8E-22 139.7 9.8 81 129-212 12-92 (213)
96 2fc8_A NCL protein; structure 99.7 1.5E-17 5E-22 122.6 10.2 78 130-213 13-90 (102)
97 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.7E-18 3.3E-22 134.7 9.9 79 131-212 71-149 (165)
98 1nu4_A U1A RNA binding domain; 99.7 3.2E-18 1.1E-22 125.0 6.4 77 131-213 7-87 (97)
99 2fc9_A NCL protein; structure 99.7 1.2E-17 4.2E-22 123.0 9.5 76 131-213 14-89 (101)
100 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.3E-18 7.7E-23 120.5 5.2 76 133-212 1-76 (77)
101 2cpj_A Non-POU domain-containi 99.7 1.7E-17 5.9E-22 122.0 10.2 74 131-213 14-87 (99)
102 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.6E-23 125.5 4.0 77 133-213 2-78 (90)
103 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 129.6 9.2 74 131-213 30-105 (119)
104 2dis_A Unnamed protein product 99.7 5.7E-18 1.9E-22 126.3 7.4 80 131-213 7-90 (109)
105 2lmi_A GRSF-1, G-rich sequence 99.7 5.4E-18 1.9E-22 127.0 7.2 78 130-212 9-89 (107)
106 2jwn_A Embryonic polyadenylate 99.7 7.7E-18 2.6E-22 128.5 7.9 78 132-213 36-113 (124)
107 2kn4_A Immunoglobulin G-bindin 99.7 5.8E-18 2E-22 134.0 7.4 80 131-213 69-148 (158)
108 2dnn_A RNA-binding protein 12; 99.7 9E-18 3.1E-22 127.7 7.9 75 132-212 16-90 (109)
109 2hgl_A HNRPF protein, heteroge 99.7 6E-18 2.1E-22 133.5 7.0 77 131-212 43-122 (136)
110 3q2s_C Cleavage and polyadenyl 99.7 6.4E-18 2.2E-22 143.5 7.5 79 131-212 67-147 (229)
111 2la4_A Nuclear and cytoplasmic 99.7 2.5E-17 8.5E-22 121.4 9.8 74 131-213 26-99 (101)
112 2hgn_A Heterogeneous nuclear r 99.7 3E-18 1E-22 135.8 4.8 77 130-212 44-120 (139)
113 2rs2_A Musashi-1, RNA-binding 99.7 1.1E-17 3.7E-22 126.0 7.7 79 130-212 23-101 (109)
114 2dnq_A RNA-binding protein 4B; 99.7 3.5E-17 1.2E-21 118.4 9.8 72 131-213 7-78 (90)
115 2dgt_A RNA-binding protein 30; 99.7 2.4E-17 8.4E-22 119.6 8.9 72 131-213 9-80 (92)
116 1x4b_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 125.8 7.8 79 131-213 26-104 (116)
117 2cpx_A Hypothetical protein FL 99.7 1.9E-17 6.5E-22 124.6 7.8 77 130-213 23-103 (115)
118 2e5j_A Methenyltetrahydrofolat 99.7 4.6E-17 1.6E-21 119.4 9.7 76 130-213 17-92 (97)
119 1fj7_A Nucleolin RBD1, protein 99.7 3.2E-18 1.1E-22 126.2 3.3 78 131-213 16-93 (101)
120 2f3j_A RNA and export factor b 99.7 5.6E-17 1.9E-21 132.6 11.0 79 130-212 86-164 (177)
121 1x4g_A Nucleolysin TIAR; struc 99.7 3.6E-17 1.2E-21 122.4 8.9 74 131-213 24-97 (109)
122 2hgm_A HNRPF protein, heteroge 99.7 2.4E-17 8.2E-22 128.7 8.2 75 131-211 41-117 (126)
123 1fxl_A Paraneoplastic encephal 99.7 6.1E-17 2.1E-21 126.6 10.2 78 132-212 2-79 (167)
124 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-17 7.1E-22 122.1 7.1 73 132-213 7-79 (89)
125 2dnp_A RNA-binding protein 14; 99.7 3.5E-17 1.2E-21 118.3 8.0 72 131-213 8-79 (90)
126 1whx_A Hypothetical protein ri 99.7 1.8E-17 6E-22 125.4 6.6 72 132-212 10-81 (111)
127 3md3_A Nuclear and cytoplasmic 99.7 1.2E-16 4.2E-21 124.8 11.6 80 131-213 86-165 (166)
128 1x4f_A Matrin 3; structural ge 99.7 4.8E-17 1.6E-21 124.8 8.9 74 131-213 24-100 (112)
129 1iqt_A AUF1, heterogeneous nuc 99.7 7E-18 2.4E-22 117.6 3.9 74 134-211 1-74 (75)
130 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-16 4.4E-21 117.3 10.9 72 131-213 14-87 (99)
131 2hvz_A Splicing factor, argini 99.7 1.9E-17 6.4E-22 122.1 5.8 73 133-213 1-73 (101)
132 2xnq_A Nuclear polyadenylated 99.7 9.1E-17 3.1E-21 118.6 9.5 73 130-213 20-93 (97)
133 1wf1_A RNA-binding protein RAL 99.7 6.4E-17 2.2E-21 121.3 8.7 73 130-213 25-98 (110)
134 3egn_A RNA-binding protein 40; 99.7 2.9E-17 9.8E-22 128.5 7.1 78 130-213 43-128 (143)
135 2dgu_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 120.4 8.1 72 131-213 10-81 (103)
136 1b7f_A Protein (SXL-lethal pro 99.7 6.8E-17 2.3E-21 126.9 9.0 79 131-212 2-80 (168)
137 2dnl_A Cytoplasmic polyadenyla 99.7 3.4E-17 1.2E-21 123.9 6.9 70 132-202 8-80 (114)
138 2g4b_A Splicing factor U2AF 65 99.7 1.2E-16 4E-21 126.3 9.8 117 73-213 55-172 (172)
139 2lcw_A RNA-binding protein FUS 99.5 2.5E-18 8.5E-23 130.1 0.0 80 131-213 6-93 (116)
140 1fjc_A Nucleolin RBD2, protein 99.7 2.9E-17 9.8E-22 119.8 5.6 74 131-212 15-88 (96)
141 2dha_A FLJ20171 protein; RRM d 99.7 8E-18 2.7E-22 130.7 2.8 77 130-211 21-101 (123)
142 2jvr_A Nucleolar protein 3; RN 99.7 3.4E-17 1.1E-21 125.1 6.1 75 131-212 27-102 (111)
143 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-16 5.8E-21 119.6 9.7 72 131-213 30-101 (108)
144 2kvi_A Nuclear polyadenylated 99.7 1.1E-16 3.7E-21 117.4 8.0 71 131-212 9-80 (96)
145 2e44_A Insulin-like growth fac 99.7 1.7E-16 5.8E-21 115.7 8.4 76 131-213 14-90 (96)
146 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5.1E-21 132.0 9.0 77 132-213 103-179 (213)
147 1l3k_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 128.2 8.8 79 130-212 11-89 (196)
148 2qfj_A FBP-interacting repress 99.7 2.7E-16 9.3E-21 128.5 10.4 80 131-213 124-203 (216)
149 3beg_B Splicing factor, argini 99.7 9.9E-17 3.4E-21 121.8 7.1 68 131-208 15-82 (115)
150 2cqh_A IGF-II mRNA-binding pro 99.7 1E-16 3.5E-21 116.4 6.9 73 131-213 7-81 (93)
151 2xs2_A Deleted in azoospermia- 99.7 3.6E-17 1.2E-21 120.7 4.3 73 131-209 8-80 (102)
152 1x5p_A Negative elongation fac 99.7 6.2E-16 2.1E-20 113.3 10.9 73 130-213 13-85 (97)
153 3pgw_S U1-70K; protein-RNA com 99.7 1.5E-16 5.2E-21 146.8 9.3 79 131-212 101-179 (437)
154 3md3_A Nuclear and cytoplasmic 99.7 1.8E-16 6.1E-21 123.8 8.1 76 133-212 1-76 (166)
155 2e5i_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 120.9 10.6 72 133-213 26-100 (124)
156 2i2y_A Fusion protein consists 99.7 2.7E-16 9.2E-21 123.9 8.7 75 131-213 72-146 (150)
157 3nmr_A Cugbp ELAV-like family 99.7 3.7E-16 1.3E-20 123.3 9.3 78 131-212 94-174 (175)
158 2hzc_A Splicing factor U2AF 65 99.6 1.6E-16 5.5E-21 113.5 6.3 70 131-210 5-85 (87)
159 3nmr_A Cugbp ELAV-like family 99.6 3.4E-16 1.2E-20 123.5 8.7 79 131-210 2-83 (175)
160 1wg1_A KIAA1579 protein, homol 99.6 2.2E-16 7.6E-21 114.0 7.0 72 132-213 5-76 (88)
161 2e5g_A U6 snRNA-specific termi 99.6 8.5E-16 2.9E-20 112.0 10.1 72 132-212 8-79 (94)
162 2yh0_A Splicing factor U2AF 65 99.6 4.7E-16 1.6E-20 125.4 9.4 81 130-213 112-192 (198)
163 2qfj_A FBP-interacting repress 99.6 5.1E-16 1.7E-20 126.9 9.6 79 131-212 27-105 (216)
164 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.6E-20 119.5 11.1 78 131-211 88-167 (168)
165 1sjr_A Polypyrimidine tract-bi 99.6 3.9E-16 1.3E-20 127.2 7.6 76 131-213 45-122 (164)
166 2cq2_A Hypothetical protein LO 99.6 3.1E-16 1.1E-20 120.7 6.6 71 131-210 24-101 (114)
167 3zzy_A Polypyrimidine tract-bi 99.6 7.7E-16 2.6E-20 121.0 8.8 74 132-213 28-104 (130)
168 3tyt_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 127.8 9.4 73 132-212 4-77 (205)
169 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.4E-20 113.8 8.8 70 132-214 8-83 (96)
170 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-15 4.4E-20 130.3 9.8 77 131-213 8-88 (282)
171 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 122.1 9.5 78 131-212 103-180 (196)
172 1fxl_A Paraneoplastic encephal 99.6 2.4E-15 8.3E-20 117.4 9.8 77 132-211 88-166 (167)
173 2cjk_A Nuclear polyadenylated 99.6 4.8E-16 1.6E-20 122.2 5.8 79 131-213 86-164 (167)
174 2cjk_A Nuclear polyadenylated 99.6 1.5E-15 5.1E-20 119.3 8.3 75 132-211 3-77 (167)
175 3tyt_A Heterogeneous nuclear r 99.6 9.2E-16 3.1E-20 127.8 6.8 70 131-205 122-193 (205)
176 2bz2_A Negative elongation fac 99.6 2.6E-15 9E-20 115.5 8.7 73 130-213 37-109 (121)
177 2voo_A Lupus LA protein; RNA-b 99.6 2.5E-15 8.5E-20 124.3 9.0 77 132-213 109-185 (193)
178 2adc_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 125.1 8.7 74 131-212 33-107 (229)
179 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4.1E-20 120.2 5.4 75 133-210 3-91 (136)
180 3d2w_A TAR DNA-binding protein 99.6 6E-15 2E-19 107.4 8.4 70 131-212 10-81 (89)
181 3u1l_A PRE-mRNA-splicing facto 99.6 4.3E-15 1.5E-19 127.7 8.2 74 131-213 133-227 (240)
182 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.1E-19 108.6 9.8 80 131-212 7-91 (105)
183 3pgw_A U1-A; protein-RNA compl 99.6 9.6E-15 3.3E-19 124.8 9.0 76 131-214 206-282 (282)
184 1fje_B Nucleolin RBD12, protei 99.5 7.7E-15 2.6E-19 116.5 7.8 114 73-213 58-172 (175)
185 3smz_A Protein raver-1, ribonu 99.5 1.6E-14 5.4E-19 123.6 9.3 79 131-213 183-262 (284)
186 1wf0_A TDP-43, TAR DNA-binding 99.5 5.7E-15 1.9E-19 106.2 4.6 70 131-212 4-75 (88)
187 3smz_A Protein raver-1, ribonu 99.5 2.9E-14 1E-18 121.9 9.8 78 132-212 95-172 (284)
188 3sde_A Paraspeckle component 1 99.5 3E-14 1E-18 121.7 9.6 73 131-212 21-93 (261)
189 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-14 4.1E-19 117.9 6.6 73 132-212 3-76 (198)
190 1fje_B Nucleolin RBD12, protei 99.5 2.7E-15 9.3E-20 119.1 2.2 79 130-213 11-89 (175)
191 1qm9_A Polypyrimidine tract-bi 99.5 1.5E-13 5E-18 111.5 10.5 75 131-213 119-195 (198)
192 3sde_A Paraspeckle component 1 99.5 5.9E-14 2E-18 119.8 8.2 76 132-211 96-175 (261)
193 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.5E-18 115.3 9.3 75 131-213 150-226 (229)
194 2dit_A HIV TAT specific factor 99.5 2.9E-13 1E-17 101.9 10.1 75 131-212 14-99 (112)
195 2ghp_A U4/U6 snRNA-associated 99.5 6.8E-14 2.3E-18 120.1 7.4 77 132-212 117-194 (292)
196 2g4b_A Splicing factor U2AF 65 99.5 8E-14 2.7E-18 109.9 6.8 71 132-212 4-85 (172)
197 2ghp_A U4/U6 snRNA-associated 99.5 6.5E-14 2.2E-18 120.2 6.7 80 131-213 209-289 (292)
198 3v4m_A Splicing factor U2AF 65 99.5 1.6E-13 5.3E-18 103.3 7.8 79 132-211 5-93 (105)
199 1jmt_A Splicing factor U2AF 35 99.4 4.6E-14 1.6E-18 106.0 3.6 72 136-211 19-102 (104)
200 2yh0_A Splicing factor U2AF 65 99.4 1.5E-13 5.2E-18 110.6 6.3 71 132-212 4-85 (198)
201 3tht_A Alkylated DNA repair pr 99.4 2.8E-13 9.4E-18 121.9 8.2 65 130-203 16-82 (345)
202 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.5E-17 100.5 8.6 80 131-210 19-104 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.7E-12 9.3E-17 96.1 8.9 72 132-213 10-88 (100)
204 3s6e_A RNA-binding protein 39; 99.2 9.6E-11 3.3E-15 89.6 9.1 76 129-211 4-89 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 1.1E-10 3.9E-15 90.5 8.3 68 132-208 18-89 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 5.1E-10 1.7E-14 82.7 5.6 70 132-213 7-84 (91)
207 3dxb_A Thioredoxin N-terminall 98.8 5.8E-09 2E-13 86.5 7.4 68 143-210 140-208 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 2.7E-09 9.1E-14 79.3 4.1 68 132-211 15-91 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.2 3.4E-06 1.2E-10 64.3 6.8 70 131-209 20-94 (117)
210 1whv_A Poly(A)-specific ribonu 98.0 4.5E-05 1.5E-09 56.8 9.1 55 132-198 16-70 (100)
211 1wey_A Calcipressin 1; structu 97.4 0.0003 1E-08 52.9 6.0 72 132-212 5-81 (104)
212 3ctr_A Poly(A)-specific ribonu 97.4 0.00032 1.1E-08 52.3 5.9 54 133-198 7-60 (101)
213 2dhx_A Poly (ADP-ribose) polym 97.3 0.00067 2.3E-08 50.9 7.5 64 132-206 8-80 (104)
214 1uw4_A UPF3X; nonsense mediate 97.3 0.0014 4.7E-08 48.0 9.0 71 133-205 2-73 (91)
215 1wwh_A Nucleoporin 35, nucleop 96.6 0.0063 2.2E-07 46.7 7.3 63 131-204 23-85 (119)
216 2l08_A Regulator of nonsense t 96.4 0.0069 2.4E-07 44.8 5.9 72 132-205 9-81 (97)
217 3pq1_A Poly(A) RNA polymerase; 95.8 0.0036 1.2E-07 58.1 2.5 55 132-195 53-107 (464)
218 2i2y_A Fusion protein consists 95.2 0.0044 1.5E-07 47.7 0.8 38 174-212 10-48 (150)
219 3d45_A Poly(A)-specific ribonu 94.4 0.1 3.5E-06 48.7 7.9 55 132-198 440-494 (507)
220 3p3d_A Nucleoporin 53; structu 91.5 0.14 4.9E-06 39.7 3.5 71 132-204 7-88 (132)
221 4f25_A Polyadenylate-binding p 65.0 1.3 4.5E-05 32.0 0.0 98 34-148 13-113 (115)
222 2g0c_A ATP-dependent RNA helic 55.3 26 0.0009 23.2 5.3 67 134-212 2-74 (76)
223 4e8u_A Putative uncharacterize 48.8 24 0.00081 28.3 4.8 51 134-190 14-75 (172)
224 3pgw_S U1-70K; protein-RNA com 30.6 6.8 0.00023 35.4 -1.3 14 149-162 9-22 (437)
225 2g9o_A Copper-transporting ATP 28.8 1.3E+02 0.0043 19.9 5.8 65 133-206 5-75 (90)
226 3fry_A Probable copper-exporti 28.7 1.1E+02 0.0038 19.2 6.2 62 132-204 6-67 (73)
227 2e7g_A Putative ribosome-bindi 28.0 1.4E+02 0.0046 22.2 5.9 36 156-198 43-79 (129)
228 4a4j_A Pacszia, cation-transpo 20.9 1.1E+02 0.0039 18.5 3.7 55 133-196 4-61 (69)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=142.83 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA---GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC---CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 679999999999999999999999999999999998743 77888999999999999999999999999999999987
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=139.26 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT---RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC---CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 689999999999999999999999999999999999743 67888999999999999999999999999999998875
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 83 a 83 (110)
T 3s8s_A 83 D 83 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=132.77 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT---RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS---CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3789999999999999999999999999999999998743 5667799999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 653
No 4
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=132.01 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++.+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT---NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS---CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 34789999999999999999999999999999999998733 667779999999999999999999999999999999
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
++.+
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8765
No 5
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=132.20 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||.++++++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS---SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34889999999999999999999999999999999998743 677889999999999999999999999999999999
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+..+
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8765
No 6
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=133.43 Aligned_cols=83 Identities=22% Similarity=0.251 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 127 ~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~--------vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
.++...++|||+|||.++++++|+++|++||.|.+ |+++.++.+ |+++|||||+|.+.++|++|++.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT---CSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC---CCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456899999999999999999999999999999 999998743 6788899999999999999999999
Q ss_pred CCeecccccccccC
Q 028098 199 VQSKVVAPNQYQSG 212 (214)
Q Consensus 199 G~~l~~~P~~~~~~ 212 (214)
|..|.+++++++..
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 99999999998765
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.8e-19 Score=136.15 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||+++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT---NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999998743 6788899999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 101 ~a~ 103 (115)
T 2cpz_A 101 LKR 103 (115)
T ss_dssp CCC
T ss_pred EcC
Confidence 754
No 8
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=5.7e-20 Score=139.74 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||+++++++|+++|++||.|++|+|+.++ +.+||||||+|.+.++|++|++.|||..|.++++.+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 6799999999999999999999999999999999986 34677999999999999999999999999999998865
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 80 a 80 (115)
T 4f25_A 80 F 80 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=131.53 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT---GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS---CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4789999999999999999999999999999999998743 5677799999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 81 ~a~ 83 (95)
T 2dnz_A 81 HVT 83 (95)
T ss_dssp ESS
T ss_pred Ecc
Confidence 653
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=130.62 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..+.++++++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4789999999999999999999999999999999998633 6788899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 82 ~a~ 84 (87)
T 3bs9_A 82 WAT 84 (87)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
No 11
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=132.33 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3478999999999999999999999999999999999874 677889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+..+
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8764
No 12
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.2e-19 Score=134.43 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT---SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS---SCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34789999999999999999999999999999999988633 567779999999999999999999999999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
++.
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=132.80 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|..|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT---GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4799999999999999999999999999999999998733 6788899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 653
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=133.06 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+.+++|||+|||+++++++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT---GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34789999999999999999999999999999999998732 667789999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 90 ~~a~ 93 (105)
T 1x5u_A 90 NKAS 93 (105)
T ss_dssp EETT
T ss_pred EECC
Confidence 7654
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.4e-19 Score=128.96 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..+.+++++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC---CccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999988632 5677799999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 753
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=4.8e-19 Score=131.33 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc---ccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV---APN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~---~P~ 207 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+.+ +++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 478999999999999999999999999999999999873 6778899999999999999999999999998 999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
.+++..
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 887654
No 17
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.5e-19 Score=134.29 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---cccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK---VVAP 206 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l---~~~P 206 (214)
...++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+ .+++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT---GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS---CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34789999999999999999999999999999999998743 66777999999999999999999999998 8899
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
++++...
T Consensus 88 l~v~~a~ 94 (106)
T 2dgp_A 88 IQVKPAD 94 (106)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9887654
No 18
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=132.03 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||.++++++|+++|++||.|+.|+|+.+. +++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR------GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS------SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 347899999999999999999999999999999997653 35569999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
++.+
T Consensus 94 ~~a~ 97 (109)
T 1x4a_A 94 EFPR 97 (109)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 7754
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=132.89 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT---KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS---CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999998743 5677799999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 89 ~a~ 91 (103)
T 2dnm_A 89 VAR 91 (103)
T ss_dssp ECS
T ss_pred ECC
Confidence 654
No 20
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-20 Score=136.92 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCC--eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC----eeccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ----SKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~--i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~----~l~~~ 205 (214)
-+||||+|||+++|+++|+++|++||. +.+|+|+.++.+ |++||||||+|.+.++|++|++.|||. .|.++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t---g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT---QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS---SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC---CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 679999999999999999999999995 679999999743 677889999999999999999999997 58999
Q ss_pred ccccccCC
Q 028098 206 PNQYQSGS 213 (214)
Q Consensus 206 P~~~~~~~ 213 (214)
++.+.+.+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99988764
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=3.9e-19 Score=126.13 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+.+|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..+.++++.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 368999999999999999999999999999999998643 67888999999999999999999999999999999887
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 78 a~ 79 (83)
T 3md1_A 78 AA 79 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=130.73 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
+.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ . |+++|||||+|.+.++|++|++.|||..|.+++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345889999999999999999999999999999999988 2 67788999999999999999999999999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+.+.+
T Consensus 87 V~~a~ 91 (103)
T 2d9p_A 87 VALAQ 91 (103)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 87653
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-20 Score=136.52 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC-CCeeccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ-VQSKVVAPNQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln-G~~l~~~P~~~ 209 (214)
+++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |+++|||||+|.+.++|++|++.|+ +..|.++++++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t---~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS---GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS---CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 57999999999999999999999999 8999999998743 6777899999999999999999874 56899999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+...
T Consensus 78 ~~a~ 81 (91)
T 2lxi_A 78 HYSD 81 (91)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 7654
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=5.2e-19 Score=133.34 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+.++|||+|||+++++++|+++|++||.|..|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34889999999999999999999999999999999998633 678889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 90 ~~a~ 93 (115)
T 2dgo_A 90 NWAT 93 (115)
T ss_dssp EESS
T ss_pred EEcc
Confidence 7653
No 25
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=5.8e-19 Score=127.74 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|..|+|+.+. |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 47899999999999999999999999999999999853 6778899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 82 ~a~ 84 (92)
T 2dgv_A 82 IDR 84 (92)
T ss_dssp ECS
T ss_pred EcC
Confidence 654
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=129.38 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++ |||..|.++++.+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK---QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT---CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4789999999999999999999999999999999998743 5677799999999999999998 99999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
...
T Consensus 85 ~a~ 87 (99)
T 2dgs_A 85 RAE 87 (99)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=131.14 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeE-EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc---
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP--- 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~-~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P--- 206 (214)
++++|||+|||.++++++|+++|++||.|. +|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT---GIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS---CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC---CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 478999999999999999999999999999 9999998743 678889999999999999999999999999999
Q ss_pred -cccccCC
Q 028098 207 -NQYQSGS 213 (214)
Q Consensus 207 -~~~~~~~ 213 (214)
+++++.+
T Consensus 85 ~l~v~~a~ 92 (99)
T 2div_A 85 RFKLNYAT 92 (99)
T ss_dssp ECCEEETT
T ss_pred eEEEeecC
Confidence 8877653
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=129.68 Aligned_cols=79 Identities=23% Similarity=0.420 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 478999999999999999999999999999999999873 6778899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=131.07 Aligned_cols=80 Identities=26% Similarity=0.384 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeC-CCCCCCCCcccEEEEEecCHHHHHHHHHHh-CCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~-k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L-nG~~l~~~P~~ 208 (214)
.+++|||+|||+++++++|+++|++||.|.+|+|+.+ +.. |+++|||||+|.+.++|++|++.| ||..|.++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT---GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS---CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC---CCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4789999999999999999999999999999999988 422 567779999999999999999999 99999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+++.+
T Consensus 91 v~~a~ 95 (107)
T 2cph_A 91 LEWAD 95 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 87754
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4e-19 Score=130.10 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+.++++++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT---GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 789999999999999999999999999999999998743 66777999999999999999999999999999999876
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 79 a~ 80 (96)
T 2x1f_A 79 SS 80 (96)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=129.29 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999998742 45599999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 653
No 32
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=6.5e-19 Score=130.54 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 127 ~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.++.+.++|||+|||+++++++|+++|++|| |.+|+|+.++.+ |+++|||||+|.+.++|++|+ .|||..|.+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT---DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC---CccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445689999999999999999999999996 999999999743 678889999999999999999 89999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+++...+
T Consensus 85 l~V~~a~ 91 (103)
T 2dng_A 85 LRVDIAE 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEec
Confidence 9987653
No 33
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=132.63 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeE--------EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~--------~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
.+++|||+|||.++++++|+++|++||.|. .|+|+.++.. |+++|||||+|.+.++|++|++.|||+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET---GKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT---CSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC---CCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 478999999999999999999999999999 6999998633 67778999999999999999999999999
Q ss_pred cccccccccCC
Q 028098 203 VVAPNQYQSGS 213 (214)
Q Consensus 203 ~~~P~~~~~~~ 213 (214)
.++++++...+
T Consensus 91 ~g~~l~V~~a~ 101 (113)
T 2cpe_A 91 QGSKLKVSLAR 101 (113)
T ss_dssp TTEECEEECSS
T ss_pred CCCEEEEEECC
Confidence 99999987654
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=131.74 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC------CCeec
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ------VQSKV 203 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln------G~~l~ 203 (214)
.++++|||+|||+++++++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|++|++.|| |..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT---EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34789999999999999999999999999999999998743 5677799999999999999999999 99999
Q ss_pred ccccccccCC
Q 028098 204 VAPNQYQSGS 213 (214)
Q Consensus 204 ~~P~~~~~~~ 213 (214)
++++.+++..
T Consensus 90 g~~l~v~~a~ 99 (111)
T 1x4h_A 90 GRQLKVDLAV 99 (111)
T ss_dssp SCEEEEECCC
T ss_pred CEEEEEEECC
Confidence 9999987654
No 35
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=131.37 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||+.|.++++.++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 478999999999999999999999999999999999874 6778899999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 90 ~a 91 (114)
T 2do0_A 90 MD 91 (114)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 36
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=130.64 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
...++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-----SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-----CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34789999999999999999999999999999999998643 3459999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
++.+
T Consensus 88 ~~a~ 91 (103)
T 2cqi_A 88 NWAT 91 (103)
T ss_dssp EECC
T ss_pred EECC
Confidence 7754
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=130.27 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT---KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT---CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999998732 5677799999999999999999999999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 84 ~a~ 86 (99)
T 1whw_A 84 PST 86 (99)
T ss_dssp ECC
T ss_pred EcC
Confidence 653
No 38
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=6.3e-19 Score=137.17 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+++++|||+|||.++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS---SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35889999999999999999999999999999999998743 567779999999999999999999999999999999
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
++..
T Consensus 121 ~~a~ 124 (129)
T 2kxn_B 121 DFSI 124 (129)
T ss_dssp SCCS
T ss_pred EEec
Confidence 8764
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=131.54 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS---CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999988633 5677799999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 88 ~a~ 90 (102)
T 2cqb_A 88 LAK 90 (102)
T ss_dssp ECC
T ss_pred eCC
Confidence 654
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.6e-19 Score=134.03 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCEEEEcCCCC------cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc-
Q 028098 132 SSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV- 204 (214)
Q Consensus 132 s~tLfVgnLp~------~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~- 204 (214)
+++|||+|||. ++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||+.|.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT---GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 68999999999 9999999999999999999999999843 6778899999999999999999999999999
Q ss_pred cccccccC
Q 028098 205 APNQYQSG 212 (214)
Q Consensus 205 ~P~~~~~~ 212 (214)
++++++..
T Consensus 83 r~l~V~~a 90 (100)
T 3ns6_A 83 HRLFLYTM 90 (100)
T ss_dssp CBCEEEES
T ss_pred eEEEEEEC
Confidence 99988754
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=130.38 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEE-EEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~v-rl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
++++|||+|||.++++++|+++|++||.|.+| +|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT---GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTT---CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 37899999999999999999999999999999 99998632 667779999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+...
T Consensus 81 ~~a~ 84 (96)
T 1x5t_A 81 SYAF 84 (96)
T ss_dssp EESC
T ss_pred EEec
Confidence 7653
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.7e-19 Score=131.02 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=69.6
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG--~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+|||+|||+++++++|+++|++|| .|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~---g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT---CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC---CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4899999999999999999999999 9999999999743 7888999999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 79 ~~ 80 (90)
T 3p5t_L 79 PS 80 (90)
T ss_dssp CC
T ss_pred EC
Confidence 64
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=131.31 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET---QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS---CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4789999999999999999999999999999999998733 5677799999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 88 ~a 89 (102)
T 1x5s_A 88 QA 89 (102)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 44
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=129.56 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcC-CCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe-eccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS-KVVAPN 207 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~-fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~-l~~~P~ 207 (214)
.++++|||+|||+++++++|+++|++ ||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||.. |.++++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34789999999999999999999999 99999999999973 6788899999999999999999999999 999999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
.+...+
T Consensus 83 ~v~~a~ 88 (104)
T 2dhg_A 83 RLSVAI 88 (104)
T ss_dssp CCCBCC
T ss_pred EEEEcc
Confidence 988753
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=6.9e-19 Score=130.90 Aligned_cols=79 Identities=23% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||+++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3478999999999999999999999999999999999973 677889999999999999999999999999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
+..
T Consensus 103 ~~a 105 (107)
T 3ulh_A 103 QLV 105 (107)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=131.43 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4789999999999999999999999999999999998743 6788899999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 99 ~a 100 (106)
T 1p27_B 99 WC 100 (106)
T ss_dssp ES
T ss_pred ee
Confidence 65
No 47
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=129.55 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 127 ~p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.|..+.++|||+|||+++++++|+++|++|| |.+|+|+.++.+ .|+++|||||+|.+.++|++|| .|||..|.+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 3444579999999999999999999999999 999999988732 1566779999999999999999 99999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
++++...
T Consensus 86 l~V~~a~ 92 (104)
T 1wi8_A 86 IRVDVAD 92 (104)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9987643
No 48
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=132.51 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCcCCHHHHH---HhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~---~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.....++++|||||+|.+.++|++|++.|||..|.+++++
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 7899999999999999999 9999999999999998874322245678999999999999999999999999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
++++.
T Consensus 95 V~~a~ 99 (111)
T 2cpi_A 95 ASLGT 99 (111)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 98765
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=129.70 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.....|+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 37899999999999999999999999999999999886411013778899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 84 ~a~ 86 (98)
T 2cpf_A 84 ISE 86 (98)
T ss_dssp CSS
T ss_pred Ecc
Confidence 654
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=131.01 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET---GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT---TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34789999999999999999999999999999999998643 678889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
...+
T Consensus 101 ~~a~ 104 (108)
T 2jrs_A 101 GHVT 104 (108)
T ss_dssp ECSC
T ss_pred EEcc
Confidence 7654
No 51
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=126.30 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCcC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~------te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
+++|||+|||.++ ++++|+++|++||.|.+|+|+... |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEED-----GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBT-----TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCC-----CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4699999999999 789999999999999999988332 67778999999999999999999999999999
Q ss_pred -cccc
Q 028098 206 -PNQY 209 (214)
Q Consensus 206 -P~~~ 209 (214)
++++
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 8876
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=7.5e-19 Score=131.51 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT---SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999988733 6777899999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 102 ~a 103 (110)
T 1oo0_B 102 WC 103 (110)
T ss_dssp ES
T ss_pred Ec
Confidence 65
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=129.11 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++. ||..|.++++.+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT---NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---CCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 4789999999999999999999999999999999998643 67888999999999999999999 9999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
...
T Consensus 91 ~a~ 93 (105)
T 2dh8_A 91 PCT 93 (105)
T ss_dssp CSC
T ss_pred Ecc
Confidence 653
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=129.02 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS---SCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3689999999999999999999999999998888877633 6788899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 91 ~a~ 93 (98)
T 2cqp_A 91 LGS 93 (98)
T ss_dssp ESS
T ss_pred EcC
Confidence 653
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=132.90 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+..++|||+|||.++++++|+++|++||.|++|+|+.+++ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3478999999999999999999999999999999999873 667779999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 81 ~~a~ 84 (116)
T 2fy1_A 81 EQAK 84 (116)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=130.58 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 128 p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
|++++++|||+|||+++++++|+++|++||.|.+|+|+.+. +++|||||+|.+.++|++|++.|||..+.++++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45568999999999999999999999999999999999763 345699999999999999999999999999999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
.+.+.+
T Consensus 78 ~v~~a~ 83 (115)
T 3lqv_A 78 VVLYYN 83 (115)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 887653
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=132.07 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC--Ceecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--QSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG--~~l~~~P~~ 208 (214)
++++|||+|||+++|+++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.|++ ..|.+++++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 47899999999999999999999999999999999874 4 999999999999999999874 789999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+++.+
T Consensus 86 V~~A~ 90 (105)
T 1sjq_A 86 IQFSN 90 (105)
T ss_dssp BCCCS
T ss_pred EEEcC
Confidence 98765
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.18 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.||+ .|.++++.+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---GKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS---CCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4789999999999999999999999999999999998743 56777999999999999999999999 8999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 92 ~a 93 (116)
T 2cqd_A 92 LA 93 (116)
T ss_dssp ES
T ss_pred Ec
Confidence 64
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.5e-18 Score=132.76 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.++
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---SSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4789999999999999999999999999999999988733 6777899999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 98 ~a 99 (126)
T 3ex7_B 98 WC 99 (126)
T ss_dssp ES
T ss_pred Ee
Confidence 64
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.3e-19 Score=127.93 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.++++|++|++.|||..|.++++++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC---CCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 689999999999999999999999999998888887633 67888999999999999999999999999999999876
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=127.50 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh--CCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L--nG~~l~~~P~~ 208 (214)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.| ++..|.++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 48899999999999999999999999999999998763 4 9999999999999999987 57889999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+++.+
T Consensus 85 V~~a~ 89 (101)
T 2cq1_A 85 IQYSN 89 (101)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 88764
No 62
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-19 Score=131.39 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++ +||..|.++++.+++
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 68999999999999999999999999999999999874 5667799999999999999998 999999999998875
No 63
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=129.23 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
....++|||+|||+++++++|+++|++|| |.+|+|+.++ .. |+++|||||+|.+.++|++|+ .|||..|.++++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTT---CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcC---CccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34589999999999999999999999999 9999999886 22 677789999999999999999 999999999999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
.+...+
T Consensus 91 ~V~~a~ 96 (100)
T 2j76_E 91 RVDVAD 96 (100)
T ss_dssp CCEECC
T ss_pred EEEecc
Confidence 987654
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-19 Score=130.88 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET---GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT---TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4689999999999999999999999999999999998743 6788899999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+..
T Consensus 84 ~a~ 86 (104)
T 1p1t_A 84 NAA 86 (104)
T ss_dssp ETT
T ss_pred eCC
Confidence 654
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=139.34 Aligned_cols=79 Identities=9% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG--~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..++|||+|||+++++++|+++|++|| .|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.++++.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t---g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN---GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 368999999999999999999999999 9999999999743 78889999999999999999999999999999999
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
++..
T Consensus 131 V~~a 134 (156)
T 3n9u_C 131 VRPA 134 (156)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8765
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=135.24 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+..++|||+|||.++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999999999999999999998743 678889999999999999999999999999999988
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
...+
T Consensus 117 ~~a~ 120 (139)
T 1u6f_A 117 ALAA 120 (139)
T ss_dssp EESS
T ss_pred EECC
Confidence 7653
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=1.8e-18 Score=124.16 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|+ .|||..+.+++++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS---GHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS---SSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEE
Confidence 579999999999999999999999999999999998633 667789999999999999999 9999999999999887
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 82 a~ 83 (89)
T 3ucg_A 82 KR 83 (89)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=130.08 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|.+|+|+.++. +++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-----BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 478999999999999999999999999999999999863 356699999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 103 ~a~ 105 (109)
T 2err_A 103 NAT 105 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 69
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.5e-18 Score=136.51 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||.++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.++++++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK---KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35789999999999999999999999999999999999743 677889999999999999999999999999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
.+.
T Consensus 114 ~~a 116 (156)
T 1h2v_Z 114 DWD 116 (156)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=2.2e-18 Score=123.59 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++ +++..|.++++.++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT---GRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999998743 6788899999999999999995 58888999988876
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 71
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=131.08 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC--eecccc
Q 028098 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ--SKVVAP 206 (214)
Q Consensus 130 ~~s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~--~l~~~P 206 (214)
+++++|||+|||+ ++++++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.||+. .|.+++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3588999999999 99999999999999999999998775 4 9999999999999999999875 599999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+.++..+
T Consensus 84 l~V~~a~ 90 (102)
T 1x4d_A 84 VRVHLSQ 90 (102)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 9987654
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=124.41 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||.++++++|+++|++||.|.+|+|+.++.+ +++++|||||+|.+.++|++|++.|||..+.++++.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--EEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 679999999999999999999999999999999998732 123667999999999999999999999999999998875
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 82 a 82 (88)
T 4a8x_A 82 V 82 (88)
T ss_dssp E
T ss_pred C
Confidence 4
No 73
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=132.23 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT---CCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3789999999999999999999999999999999998633 5677799999999999999999999999999999886
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 139 ~ 139 (140)
T 2ku7_A 139 L 139 (140)
T ss_dssp C
T ss_pred e
Confidence 5
No 74
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=124.71 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.+.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 478999999999999999999999999999999999973 677889999999999999999999999996544333
No 75
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=134.72 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE--EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC----eecc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ----SKVV 204 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~--vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~----~l~~ 204 (214)
.+++|||+|||+++|+++|+++|++||.|.. |+|+.++.+ |++||||||+|.+. +|++|++.|||. .|.+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t---g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT---QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS---SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC---CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4789999999999999999999999999977 999999843 67788999999999 999999999999 9999
Q ss_pred cccccccCC
Q 028098 205 APNQYQSGS 213 (214)
Q Consensus 205 ~P~~~~~~~ 213 (214)
++++++..+
T Consensus 98 r~l~V~~a~ 106 (131)
T 2m2b_A 98 KTINVEFAK 106 (131)
T ss_dssp CCCCCEECC
T ss_pred EEEEEEECC
Confidence 999987653
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=127.41 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~-vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..++|||+|||+++++++|+++|++||.|.+ |+|+.++. |+++|||||+|.++++|++||+. ||..|.++++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 4789999999999999999999999999987 88888753 66777999999999999999998 999999999887
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
..
T Consensus 89 ~~ 90 (104)
T 1wg5_A 89 FK 90 (104)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 77
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=129.54 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCcC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 131 ASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 131 ~s~tLfVgnLp~~~------te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
.+++|||+|||+++ ++++|+++|++||.|.+|+|+.. + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~-~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB-T----TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC-C----CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 47899999999999 78999999999999999999832 2 6777899999999999999999999999999
Q ss_pred c-ccccccCC
Q 028098 205 A-PNQYQSGS 213 (214)
Q Consensus 205 ~-P~~~~~~~ 213 (214)
+ ++++++..
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99887653
No 78
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=133.96 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCcCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~----~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
++++|||+|||+++++++|+ ++|++||.|.+|.+..+ |+++|||||+|.+.++|+.|++.|||..|.+++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 47899999999999999876 69999999999988543 456679999999999999999999999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+++++.+
T Consensus 102 l~V~~a~ 108 (127)
T 2a3j_A 102 LVITFSE 108 (127)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9998765
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=128.50 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++|+++|+++|++|| +++|+|+.+++ |++||||||+|.+.++|++|| .+|+..|.++++.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 368999999999999999999999999 55999999973 788889999999999999999 579999999998875
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 88 ~ 88 (102)
T 1wez_A 88 L 88 (102)
T ss_dssp E
T ss_pred E
Confidence 4
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.3e-18 Score=121.49 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=68.8
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
+|||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ |||..|.++++.+++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT---NRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS---TTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999999988732 6777899999999999999998 9999999999988753
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=129.36 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe--ecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS--KVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~--l~~~P~~ 208 (214)
++++|||+|||+++|+++|+++|++||.|.+|+++..+ | ||||+|++.++|++|++.|||.. |.++|+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 48999999999999999999999999999999998653 4 99999999999999999999986 7799999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
++..+
T Consensus 91 V~~S~ 95 (100)
T 3r27_A 91 VNYST 95 (100)
T ss_dssp EEECS
T ss_pred EEecc
Confidence 88654
No 82
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=132.95 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 128 p~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
+....++|||+|||+++++++|+++|++||.|.++.++.++.+ |+++|||||+|.+.++|++||+ |||..|.++++
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~---g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN---GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT---SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC---CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 3445789999999999999999999999999988655555422 7788899999999999999999 99999999999
Q ss_pred cccc
Q 028098 208 QYQS 211 (214)
Q Consensus 208 ~~~~ 211 (214)
.+..
T Consensus 97 ~V~~ 100 (124)
T 1wel_A 97 QVHP 100 (124)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=2.3e-18 Score=131.69 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~---i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
...++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++||+ |||..|.+++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34789999999999999999999999999 89999999874 6778899999999999999999 9999999999
Q ss_pred ccccc
Q 028098 207 NQYQS 211 (214)
Q Consensus 207 ~~~~~ 211 (214)
+.+..
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=129.46 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|+ .|||+.|.++++.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS---RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS---SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC---CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3589999999999999999999999999999999998743 566779999999999999999 999999999999886
Q ss_pred c
Q 028098 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
+
T Consensus 100 ~ 100 (114)
T 2cq4_A 100 A 100 (114)
T ss_dssp E
T ss_pred e
Confidence 5
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=122.86 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++| .|.+|+|+.+.. |+++|||||+|.+.++|++|++ |||..|.++++.+.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 47899999999999999999999999 999999999843 6788899999999999999999 99999999999886
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 83 ~a 84 (91)
T 2dgw_A 83 RE 84 (91)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=127.08 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+.+++|||+|||.++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4588999999999999999999999999999999999873 566779999999999999999999999999999988
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
+..
T Consensus 109 ~~a 111 (124)
T 2kt5_A 109 QLV 111 (124)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=119.46 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh-CCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L-nG~~l~~~P~~~ 209 (214)
.+++|||+|||.++++++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| ||..+.++++++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-----g----~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-----Q----CAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-----C----EEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 47899999999999999999999999999999999764 4 9999999999999999999 999999999999
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8764
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=124.36 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCcCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~----~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||..|.+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 47899999999999999999 99999999999999998743 349999999999999999999999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
++++..+
T Consensus 82 l~V~~a~ 88 (96)
T 2dgx_A 82 ILVSLAT 88 (96)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9987654
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.89 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC--eecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ--SKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~--~l~~~P~~ 208 (214)
++++|||+|||+++++++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.||+. .|.+++++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 37899999999999999999999999999999998753 4 9999999999999999998765 48999998
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
++..+
T Consensus 85 V~~a~ 89 (104)
T 1wex_A 85 FNYST 89 (104)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 87654
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=122.94 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||+++++++|+++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++|++ ++..|.++++.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT---GHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC---CCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4789999999999999999999999999999999998743 6788899999999999999998 4677888887776
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 89 ~a 90 (103)
T 2cqg_A 89 LP 90 (103)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 91
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=1.7e-18 Score=135.56 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+++++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS---SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999988732 6677799999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 123 ~a~ 125 (135)
T 2lea_A 123 MAR 125 (135)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=129.56 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i-~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
.+.++|||+|||+++++++|+++|++||.| ..|+|+.+++ |+++|||||+|.+.++|++||+. ||..|.++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----GQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----SSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 347899999999999999999999999999 8899999873 66777999999999999999987 99999999998
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
+...
T Consensus 88 v~~a 91 (114)
T 2cpy_A 88 VHVV 91 (114)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8653
No 93
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=124.99 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc-----
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV----- 204 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~----- 204 (214)
...++|||+|||+++++++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||+.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34789999999999999999999999999999999887 3 99999999999999999999999999
Q ss_pred cccccccC
Q 028098 205 APNQYQSG 212 (214)
Q Consensus 205 ~P~~~~~~ 212 (214)
++++++..
T Consensus 83 ~~i~V~~a 90 (108)
T 1x4c_A 83 AYIRVKVD 90 (108)
T ss_dssp EEEEEEES
T ss_pred eEEEEEeC
Confidence 88887654
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=121.12 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec--ccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV--VAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~--~~P~~ 208 (214)
++++|||+|||.++++++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.|||..|. +++++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----S----FAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-----C----CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-----C----EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 37899999999999999999999999999999998763 4 9999999999999999999999999 99999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+++.+
T Consensus 87 V~~a~ 91 (97)
T 1why_A 87 VDFAK 91 (97)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87754
No 95
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=8.1e-18 Score=139.66 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..+++||||+|||+++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+.+++++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT---RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC---CCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 345789999999999999999999999999999999998743 67888999999999999999999999999999988
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
+.+.
T Consensus 89 ~~~~ 92 (213)
T 4f02_A 89 IMWS 92 (213)
T ss_dssp EEEC
T ss_pred cccc
Confidence 7653
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=122.65 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|||.++++++|+++|++|+ +|+++.++.. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3589999999999999999999999874 6778877633 678889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 87 ~~a~ 90 (102)
T 2fc8_A 87 DWAK 90 (102)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=9.7e-18 Score=134.68 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+.+|++||.|..|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.++++.+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC---CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999998743 6788899999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 148 ~a 149 (165)
T 1rk8_A 148 WC 149 (165)
T ss_dssp ES
T ss_pred Ee
Confidence 64
No 98
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.2e-18 Score=124.97 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCcCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~----~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
++++|||+|||.++++++|+ ++|++||.|.+|+++.. |+++|||||+|.+.++|++|++.|||..+.+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 47899999999999999999 99999999999998743 455669999999999999999999999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+++++.+
T Consensus 81 l~v~~a~ 87 (97)
T 1nu4_A 81 MRIQYAK 87 (97)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 9988764
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=123.04 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.| +++.+.. |+++|||||+|.+.++|++|++.|||..|.++++++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 47899999999999999999999999976 5666543 5667799999999999999999999999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 653
No 100
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-18 Score=120.53 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=69.3
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.++ ..+.++++.+++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS---SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC---CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 48999999999999999999999999999999998733 5677799999999999999999999 9999999987653
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=121.98 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|++|+++.++ | ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 47899999999999999999999999999999998663 4 99999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 85 ~a~ 87 (99)
T 2cpj_A 85 FAC 87 (99)
T ss_dssp ESS
T ss_pred EcC
Confidence 654
No 102
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.4e-18 Score=125.49 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=70.6
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.+ |++|++.|||..+.+++++++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET---KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS---CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC---CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 58999999999999999999999999999999998743 677789999999999 99999999999999999998765
Q ss_pred C
Q 028098 213 S 213 (214)
Q Consensus 213 ~ 213 (214)
.
T Consensus 78 ~ 78 (90)
T 2ki2_A 78 N 78 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=129.62 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln--G~~l~~~P~~ 208 (214)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|+ +..|.+++++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 47899999999999999999999999999999999874 4 99999999999999999998 4689999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
++..+
T Consensus 101 V~~a~ 105 (119)
T 2ad9_A 101 IQFSN 105 (119)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 87654
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.7e-18 Score=126.30 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCC-eEEEEEe-eCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~-i~~vrl~-~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln--G~~l~~~P 206 (214)
++++|||+|||+++++++|+++|++||. |.+|+++ .++.+ |+++|||||+|.+.++|++|++.|| +..+.+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCC---CCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3789999999999999999999999998 9999998 55532 5677799999999999999999996 59999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+++.+.+
T Consensus 84 l~V~~a~ 90 (109)
T 2dis_A 84 IAVDWAE 90 (109)
T ss_dssp CEEEESC
T ss_pred EEEEEcC
Confidence 9987654
No 105
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=127.03 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~---i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
+..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++||+ |||..|.+++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45789999999999999999999999988 89999998874 5667799999999999999999 9999999999
Q ss_pred cccccC
Q 028098 207 NQYQSG 212 (214)
Q Consensus 207 ~~~~~~ 212 (214)
+.+...
T Consensus 84 i~V~~a 89 (107)
T 2lmi_A 84 VEVYEI 89 (107)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 988654
No 106
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=7.7e-18 Score=128.47 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=72.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||.++++++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|+ .|||..|.++++.+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS---GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT---SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 689999999999999999999999999999999998633 677889999999999999999 8999999999999876
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 112 a~ 113 (124)
T 2jwn_A 112 KR 113 (124)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 107
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=5.8e-18 Score=134.05 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC---TTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4789999999999999999999999999999999998632 6677799999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 146 ~a~ 148 (158)
T 2kn4_A 146 MAR 148 (158)
T ss_dssp EEC
T ss_pred ECC
Confidence 643
No 108
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9e-18 Score=127.69 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.++++|++|| .|||..|.++++.+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 5799999999999999999999999 899999999864 566779999999999999999 7999999999988754
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 90 a 90 (109)
T 2dnn_A 90 A 90 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=6e-18 Score=133.54 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~---i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|.++++
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4789999999999999999999999999 88999999874 6788899999999999999999 99999999999
Q ss_pred ccccC
Q 028098 208 QYQSG 212 (214)
Q Consensus 208 ~~~~~ 212 (214)
.+...
T Consensus 118 ~V~~a 122 (136)
T 2hgl_A 118 EVFKS 122 (136)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88654
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=6.4e-18 Score=143.50 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG--~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |++||||||+|.+.++|++||+.|||+.|.++++.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t---g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT---CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 367999999999999999999999999 9999999999743 78889999999999999999999999999999999
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
++..
T Consensus 144 V~~a 147 (229)
T 3q2s_C 144 VTPV 147 (229)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
No 111
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.5e-17 Score=121.38 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|.+|+++..+ | ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-----G----CCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 37899999999999999999999999999999998432 4 99999999999999999999999999999999
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+++
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 875
No 112
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3e-18 Score=135.83 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
...++|||+|||+++|+++|+++|++|| |++|+|+.++. |+++|||||+|.+.++|++|| .||+..|.++++.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3478999999999999999999999999 77999999874 667779999999999999999 89999999999988
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 118 ~~a 120 (139)
T 2hgn_A 118 FLN 120 (139)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=126.05 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
+.+++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.+ |..|.++++.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT---CCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC---CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 35789999999999999999999999999999999998743 667779999999999999999886 48899988887
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 99 ~~a 101 (109)
T 2rs2_A 99 KVA 101 (109)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 114
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=118.38 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+++ + | ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--K-----N----YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--T-----T----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 47899999999999999999999999999999998 2 3 99999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 76 ~a~ 78 (90)
T 2dnq_A 76 ASK 78 (90)
T ss_dssp CSS
T ss_pred ECC
Confidence 653
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=119.65 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||+++++++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..|.+++++++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4789999999999999999999999999999999733 99999999999999999999999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 653
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=125.76 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|++||+. ||..|.++++.+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT---SSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC---CCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 4689999999999999999999999999999999998743 56777999999999999999988 9999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
...
T Consensus 102 ~a~ 104 (116)
T 1x4b_A 102 RAV 104 (116)
T ss_dssp CCS
T ss_pred ECC
Confidence 653
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=124.55 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i----~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
.++++|||+|||.++++++|+++|++||.| ..+++.. |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 357999999999999999999999999999 5555552 45566999999999999999999999999999
Q ss_pred ccccccCC
Q 028098 206 PNQYQSGS 213 (214)
Q Consensus 206 P~~~~~~~ 213 (214)
++.+++.+
T Consensus 96 ~l~v~~a~ 103 (115)
T 2cpx_A 96 ILVIEFGK 103 (115)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcc
Confidence 99988754
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=119.43 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+++|||+|||+++++++|+++|++||.|. ++++.++ ++|||||+|.+.++|++|++.|||..|.++++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG-------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC-------CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3478999999999999999999999999997 7777653 3349999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
...+
T Consensus 89 ~~a~ 92 (97)
T 2e5j_A 89 ALAR 92 (97)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7654
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-18 Score=126.21 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|.. +++.++.. |+++|||||+|.+.++|++|++ |||..|.++++++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT---GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE---ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC---CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 5789999999999999999999999999888 55555422 5666799999999999999998 99999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 91 ~a~ 93 (101)
T 1fj7_A 91 KPK 93 (101)
T ss_dssp CCS
T ss_pred EcC
Confidence 653
No 120
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.6e-17 Score=132.65 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+++|||+|||+++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++++.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4579999999999999999999999999999999999873 566779999999999999999999999999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
++.
T Consensus 162 ~~a 164 (177)
T 2f3j_A 162 QLV 164 (177)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=122.41 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||.++++++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 47899999999999999999999999999999999873 4 99999999999999999999999999999998
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 95 ~a~ 97 (109)
T 1x4g_A 95 WGK 97 (109)
T ss_dssp CCC
T ss_pred ecC
Confidence 764
No 122
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2.4e-17 Score=128.73 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeE--EEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~--~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..++|||+|||+++|+++|+++|++| .|+ +|+|+.++. |+++|||||+|.++++|++||+. ++..|.++++.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 47899999999999999999999999 777 899998874 66777999999999999999985 77999999998
Q ss_pred ccc
Q 028098 209 YQS 211 (214)
Q Consensus 209 ~~~ 211 (214)
+..
T Consensus 115 V~~ 117 (126)
T 2hgm_A 115 VFK 117 (126)
T ss_dssp CEE
T ss_pred EEE
Confidence 764
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=6.1e-17 Score=126.64 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||.++++++|+++|++||.|.+|+++.++.. |+++|||||+|.++++|++|++.|||..+.+++++++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 689999999999999999999999999999999998733 67888999999999999999999999999999998876
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 79 ~ 79 (167)
T 1fxl_A 79 A 79 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.1e-17 Score=122.07 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+..|||+||++.+||++|+++|.+||.|++++++..+ | ||||+|.++++|++|++.|||.+|.+++|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k-----G----faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ-----G----IALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC-----c----EEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 6799999999999999999999999999999997632 4 999999999999999999999999999999876
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=118.35 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4789999999999999999999999999999999743 99999999999999999999999999999987
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 77 ~a~ 79 (90)
T 2dnp_A 77 LST 79 (90)
T ss_dssp ESC
T ss_pred ECC
Confidence 653
No 126
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=125.44 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||+++++++|+++|++||.|..|+|+..+ | ||||+|.+.++|++|++.|||+.|.++++.+++
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----I----TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-----S----CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 6799999999999999999999999999999987543 4 999999999999999999999999999999876
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 81 a 81 (111)
T 1whx_A 81 A 81 (111)
T ss_dssp E
T ss_pred C
Confidence 4
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-16 Score=124.77 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..+.++++++.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4789999999999999999999999999999999998633 6788899999999999999999999999999999998
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 765
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=124.76 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC--Ceeccccc
Q 028098 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--QSKVVAPN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG--~~l~~~P~ 207 (214)
++++|||+|||++ +++++|+++|++||.|.+|+|+..+ | ||||+|.+.++|++|++.||+ ..|.++++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4889999999998 9999999999999999999997543 4 999999999999999998865 56999999
Q ss_pred ccccCC
Q 028098 208 QYQSGS 213 (214)
Q Consensus 208 ~~~~~~ 213 (214)
.++..+
T Consensus 95 ~V~~a~ 100 (112)
T 1x4f_A 95 KVDLSE 100 (112)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 887643
No 129
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=7e-18 Score=117.62 Aligned_cols=74 Identities=16% Similarity=0.325 Sum_probs=67.5
Q ss_pred EEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 134 tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
||||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++. ++..+.++++.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT---NKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC---SSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 6999999999999999999999999999999988643 56777999999999999999985 99999999998865
No 130
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=117.29 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~f--G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
++++|||+|||+++++++|+++|++| |.|..|+++. | ||||+|.+.++|++|++.|||..|.+++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------D----YAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------S----EEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------C----eEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 47899999999999999999999999 9999998752 3 999999999999999999999999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+.+.+
T Consensus 83 v~~a~ 87 (99)
T 2cpd_A 83 VTLAK 87 (99)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 87654
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=122.05 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=67.1
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
++|||+|||.++++++|+++|++||.|.+|+++.+ +.| ||||+|.+.++|++|++.|||..+.++++.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPG----FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSS----EEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCC----EEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 58999999999999999999999999999999987 114 9999999999999999999999999999988765
Q ss_pred C
Q 028098 213 S 213 (214)
Q Consensus 213 ~ 213 (214)
+
T Consensus 73 ~ 73 (101)
T 2hvz_A 73 T 73 (101)
T ss_dssp S
T ss_pred c
Confidence 3
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=9.1e-17 Score=118.60 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 130 ~~s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
.++++|||+|||+ ++++++|+++|++||.|.+|++. + | ||||+|.+.++|++|++.|||..+.+++++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N-----A----FGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--S-----S----EEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C-----C----EEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3589999999998 99999999999999999999984 1 3 999999999999999999999999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
++..+
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87654
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=6.4e-17 Score=121.25 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 130 DASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 130 ~~s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..+++|||+|||++ +++++|+++|++||.|.+|+| .+ | ||||+|.+.++|++|++.|||..|.+++++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HK-----G----YAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ET-----T----EEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eC-----C----EEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34689999999999 999999999999999999998 11 3 999999999999999999999999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+...+
T Consensus 94 V~~a~ 98 (110)
T 1wf1_A 94 INMAG 98 (110)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87653
No 134
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=128.54 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEE--------EEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV--------RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS 201 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~v--------rl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~ 201 (214)
.++++|||+|||+++|+++|+++|++||.|..| ++... |+++|||||+|.+.++|++|++.|||+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 347899999999999999999999999998764 33332 5677899999999999999999999999
Q ss_pred ecccccccccCC
Q 028098 202 KVVAPNQYQSGS 213 (214)
Q Consensus 202 l~~~P~~~~~~~ 213 (214)
|.++++.++..+
T Consensus 117 ~~g~~l~V~~a~ 128 (143)
T 3egn_A 117 LFGKPMVVQFAR 128 (143)
T ss_dssp ETTEECEEEECC
T ss_pred eCCcEEEEEECC
Confidence 999999998764
No 135
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=5.3e-17 Score=120.36 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+++. | ||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------D----YAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------S----CEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------C----EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 378999999999999999999999999999999873 2 99999999999999999999999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 79 ~a~ 81 (103)
T 2dgu_A 79 FAK 81 (103)
T ss_dssp ECC
T ss_pred EcC
Confidence 653
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=6.8e-17 Score=126.94 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||+++++++|+++|++||.|.+|+++.++.. |+++|||||+|.++++|++|++.|||..+.++++.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT---GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC---CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 3789999999999999999999999999999999998632 5677799999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 79 ~~ 80 (168)
T 1b7f_A 79 YA 80 (168)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 137
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=123.95 Aligned_cols=70 Identities=26% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHh---CCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL---QVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~L---nG~~l 202 (214)
+++|||+|||+++++++|+++|++||.|. ++++.++.++..|+++|||||+|.+.++|++|++.| +|..|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 78999999999999999999999999999 888887744333677889999999999999999998 77744
No 138
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.2e-16 Score=126.27 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=91.9
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHH
Q 028098 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (214)
Q Consensus 73 ~~~~~~~-~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~~~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~ 151 (214)
+..|.+. ++..++ .++|..+.++.+...-. ....++...++|||+|||.++++++|++
T Consensus 55 fV~f~~~~~A~~A~--~~~~~~~~g~~i~v~~~-------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 55 FLEFRSVDETTQAM--AFDGIIFQGQSLKIRRP-------------------HDYQPLPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp EEEESSHHHHHHHG--GGTTCEETTEECEEECC-------------------SSCCCCTTTTCEEEECCCTTCCHHHHHH
T ss_pred EEEeCCHHHHHHHH--HhCCcEecCceeeecCC-------------------cccCCCCCCCEEEEEcCCCcCCHHHHHH
Confidence 5567775 444566 58887776654432110 0011222378999999999999999999
Q ss_pred hhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccCC
Q 028098 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSGS 213 (214)
Q Consensus 152 lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~~ 213 (214)
+|++||.|..|+++.++.. |+++|||||+|.+.++|++|++.|||..+.++++.+++.+
T Consensus 114 ~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEECTTT---CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHhcCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999998633 6788899999999999999999999999999999988754
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-18 Score=130.14 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~--------vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
++++|||+|||.++++++|+++|++||.|.. |+|+.++.+ |+++|||||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4789999999999999999999999999998 889888632 56777999999999999999999999999
Q ss_pred cccccccccCC
Q 028098 203 VVAPNQYQSGS 213 (214)
Q Consensus 203 ~~~P~~~~~~~ 213 (214)
.++++.++..+
T Consensus 83 ~g~~l~V~~a~ 93 (116)
T 2lcw_A 83 SGNPIKVSFAT 93 (116)
Confidence 99999987653
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-17 Score=119.82 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
++++|||+|||.++++++|+++|++||.|..+ .. . |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~-~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ-D----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EE-T----TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CC-C----CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 47899999999999999999999999987665 22 1 5677899999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 87 ~a 88 (96)
T 1fjc_A 87 YT 88 (96)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 141
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8e-18 Score=130.72 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i----~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
....+|||+|||+++|+++|+++|++||.| ..|+|+.+++ |+++|||||+|.+.++|++||+. |+..|.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 347899999999999999999999999875 6899998853 77888999999999999999986 99999998
Q ss_pred cccccc
Q 028098 206 PNQYQS 211 (214)
Q Consensus 206 P~~~~~ 211 (214)
.+.+..
T Consensus 96 ~i~V~~ 101 (123)
T 2dha_A 96 YIELFR 101 (123)
T ss_dssp EECCEE
T ss_pred EEEEEE
Confidence 887753
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=3.4e-17 Score=125.06 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
...+|||+|||+++++++|+++|++|| .|..|+++.++ ++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------FDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 478999999999999999999999999 89999886442 3349999999999999999999999999999988
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 100 ~~a 102 (111)
T 2jvr_A 100 ERD 102 (111)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 143
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.7e-16 Score=119.56 Aligned_cols=72 Identities=31% Similarity=0.522 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|++|+++ + | ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N-----G----FAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T-----T----EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 47899999999999999999999999999999998 2 4 99999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
..+
T Consensus 99 ~a~ 101 (108)
T 2jvo_A 99 YSK 101 (108)
T ss_dssp SCS
T ss_pred Eec
Confidence 764
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=117.37 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
++++|||+|||+ ++++++|+++|++||.|.+|+|. + | ||||+|.+.++|++|++.|||..+.++++++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N-----A----FGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--T-----T----EEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C-----C----EEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 488999999999 99999999999999999999984 1 3 9999999999999999999999999999988
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 78 ~~a 80 (96)
T 2kvi_A 78 EVS 80 (96)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=115.67 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEE-EeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vr-l~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+++|||+|||+++++++|+++|++||.|.+|+ |+.++.+ | .|||+|.+.++|++|++.|||..|.++++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---A----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---E----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---C----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 478999999999999999999999999999995 7777532 3 5999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
...+
T Consensus 87 ~~a~ 90 (96)
T 2e44_A 87 AYIP 90 (96)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7653
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.5e-16 Score=132.02 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++++++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++|++.|||..|.++++.+.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5799999999999999999999999999999999986 34577999999999999999999999999999999876
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
..
T Consensus 178 a~ 179 (213)
T 4f02_A 178 FK 179 (213)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 147
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.5e-16 Score=128.19 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++. ++..+.++++.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT---KRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC---CCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 45899999999999999999999999999999999998743 67888999999999999999976 899999999887
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 87 ~~~ 89 (196)
T 1l3k_A 87 KRA 89 (196)
T ss_dssp EEC
T ss_pred ecc
Confidence 654
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=2.7e-16 Score=128.48 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||.++++++|+++|++||.|..|+++.++.. |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT---GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 3689999999999999999999999999999999998643 6788899999999999999999999999999999887
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+..
T Consensus 201 ~a~ 203 (216)
T 2qfj_A 201 KAV 203 (216)
T ss_dssp ECS
T ss_pred Eec
Confidence 654
No 149
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=9.9e-17 Score=121.85 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~ 208 (214)
..++|||+|||+++++++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||+.|.+++++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4689999999999999999999999999999999876 3 999999999999999999999999999843
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=116.40 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCC-eEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC-Ceecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-QSKVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~-i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG-~~l~~~P~~ 208 (214)
.+++|||+|||+++++++|+++|++||. |..+.+.. + | ||||+|.+.++|++|++.||| ..|.+++++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~-~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-S-----G----YAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-T-----T----EEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC-C-----C----EEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4789999999999999999999999999 66565532 1 4 999999999999999999999 999999999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+.+.+
T Consensus 77 v~~a~ 81 (93)
T 2cqh_A 77 VDYSV 81 (93)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 87653
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=3.6e-17 Score=120.75 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++ +|..+.++++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 468999999999999999999999999999999999973 6788899999999999999998 666666666554
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-16 Score=113.34 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|| ++++++|+++|++||.|.+|+|... +|||||+|.+.++|++|++.|||..|.++++.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP---------RNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC---------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34789999996 8999999999999999999998532 239999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+..
T Consensus 82 ~~a~ 85 (97)
T 1x5p_A 82 NIAR 85 (97)
T ss_dssp ECCS
T ss_pred EECC
Confidence 8754
No 153
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=1.5e-16 Score=146.84 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+.++|||+|||+++|+++|.++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++||+.|||+.|.+++|.+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC---CCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4789999999999999999999999999999999998633 6777899999999999999999999999999999987
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 178 ~a 179 (437)
T 3pgw_S 178 VE 179 (437)
T ss_pred Ee
Confidence 64
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-16 Score=123.83 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=70.1
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSG 212 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~ 212 (214)
++|||+|||.++++++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|||..+.++++.+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 4899999999999999999999999999999999874 556779999999999999999999999999999988754
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.3e-16 Score=120.88 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccE-EEEEecCHHHHHHHHHHhCCCeecc--ccccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVQSKVV--APNQY 209 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~-aFVeF~~~~~A~~Al~~LnG~~l~~--~P~~~ 209 (214)
-.|||+||++.+++++|+++|++||.|++|+|+.. + | | |||+|.+.++|++|++.|||..|.+ .++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-G----f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-G----IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-S----EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-C----CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34679999999999999999999999999999653 1 3 7 9999999999999999999999988 57887
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
+..+
T Consensus 97 ~~Ak 100 (124)
T 2e5i_A 97 EYAR 100 (124)
T ss_dssp ECCS
T ss_pred EEec
Confidence 7654
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=2.7e-16 Score=123.92 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||+++++++|+++|++||.|.+|+|+.+. +| ||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP----PG----FAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS----CS----EEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC----Cc----EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 47899999999999999999999999999999998872 14 99999999999999999999999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+.+
T Consensus 144 ~a~ 146 (150)
T 2i2y_A 144 LSN 146 (150)
T ss_dssp ECC
T ss_pred EcC
Confidence 754
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.7e-16 Score=123.27 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc---ccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV---APN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~---~P~ 207 (214)
..++|||+|||.++|+++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|||..+.. +|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 478999999999999999999999999999999999864 6778899999999999999999999998874 899
Q ss_pred ccccC
Q 028098 208 QYQSG 212 (214)
Q Consensus 208 ~~~~~ 212 (214)
++++.
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88764
No 158
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=1.6e-16 Score=113.46 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~f----G-------~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
++++|||+|||+++++++|+++|++| | .|.+|++..++ | ||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-----g----~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-----S----EEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-----c----EEEEEcCCHHHHHHHH-hcCC
Confidence 37899999999999999999999999 8 89999998663 4 9999999999999999 9999
Q ss_pred Ceecccccccc
Q 028098 200 QSKVVAPNQYQ 210 (214)
Q Consensus 200 ~~l~~~P~~~~ 210 (214)
..+.+++++++
T Consensus 75 ~~~~g~~l~V~ 85 (87)
T 2hzc_A 75 IIFQGQSLKIR 85 (87)
T ss_dssp CEETTEECEEE
T ss_pred CEECCeEEEEe
Confidence 99999998875
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.4e-16 Score=123.49 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec---cccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV---VAPN 207 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~---~~P~ 207 (214)
.+++|||+|||+++++++|+++|++||.|.+|+|+.++.+.. ++++|||||+|.+.++|++|++.|||..+. ..++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP-PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS-CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-CCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 378999999999999999999999999999999999974310 267889999999999999999999998876 4555
Q ss_pred ccc
Q 028098 208 QYQ 210 (214)
Q Consensus 208 ~~~ 210 (214)
.+.
T Consensus 81 ~~~ 83 (175)
T 3nmr_A 81 QMK 83 (175)
T ss_dssp EEE
T ss_pred EEc
Confidence 544
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.2e-16 Score=113.95 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||+++++++|+++|++| .|.+|++.. ++|||||+|.++++|++|++.|||..+.++++++++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR---------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG---------GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC---------CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 6899999999999999999999999 999999851 234999999999999999999999999999999877
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
..
T Consensus 75 a~ 76 (88)
T 1wg1_A 75 QP 76 (88)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=111.99 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++++++|+++|++||.|.+| +.++.+ |+ ||||+|.+.++|++|++ |||..|.++++.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~---g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDK---GV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSS---CC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCC---Cc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 6799999999999999999999999999987 444322 33 99999999999999999 999999999999876
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 79 a 79 (94)
T 2e5g_A 79 R 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=4.7e-16 Score=125.43 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
...++|||+|||.++++++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..|.++++++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT---CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45799999999999999999999999999999999998633 677889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 189 ~~a~ 192 (198)
T 2yh0_A 189 QRAS 192 (198)
T ss_dssp EESC
T ss_pred EECC
Confidence 7654
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=5.1e-16 Score=126.85 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT---MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 3689999999999999999999999999999999988732 5667799999999999999999999999999999886
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 104 ~~ 105 (216)
T 2qfj_A 104 RP 105 (216)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.3e-15 Score=119.51 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc--cccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV--APNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~--~P~~ 208 (214)
.+++|||+|||.++++++|+++|++||.|..++++.++.. |+++|||||+|.+.++|++|++.|||..+.+ +|++
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT---GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 3689999999999999999999999999999999998732 6778899999999999999999999999988 8888
Q ss_pred ccc
Q 028098 209 YQS 211 (214)
Q Consensus 209 ~~~ 211 (214)
+..
T Consensus 165 V~~ 167 (168)
T 1b7f_A 165 VRL 167 (168)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=3.9e-16 Score=127.23 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc--cccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV--APNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~--~P~~ 208 (214)
...+|||+||++.+|+++|+++|++||.|++|+|..++ ++|||||+|.+.++|++|++.|||..|.+ ++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 35679999999999999999999999999999987653 23499999999999999999999999976 8888
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+++.+
T Consensus 118 V~~Ak 122 (164)
T 1sjr_A 118 IDFSK 122 (164)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 87654
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=120.68 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCEEEE--cCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee-----c
Q 028098 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK-----V 203 (214)
Q Consensus 131 ~s~tLfV--gnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l-----~ 203 (214)
++++||| +||++++++++|+++|++||.|.+|.|+.++ | ||||+|.+.++|++|++.|||..| .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----S----CEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4789999 7799999999999999999999999887543 4 999999999999999999999988 5
Q ss_pred ccccccc
Q 028098 204 VAPNQYQ 210 (214)
Q Consensus 204 ~~P~~~~ 210 (214)
++|+.+.
T Consensus 95 g~~l~v~ 101 (114)
T 2cq2_A 95 KITLYLN 101 (114)
T ss_dssp EEECEEE
T ss_pred CcEEEEE
Confidence 6665543
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=7.7e-16 Score=121.03 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccE-EEEEecCHHHHHHHHHHhCCCeecc--cccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVQSKVV--APNQ 208 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~-aFVeF~~~~~A~~Al~~LnG~~l~~--~P~~ 208 (214)
--.|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|++|++.|||..|.+ .+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3467799999999999999999999999999987653 237 9999999999999999999999998 8888
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
|++.+
T Consensus 100 I~~ak 104 (130)
T 3zzy_A 100 IDFSK 104 (130)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 87754
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=9.1e-16 Score=127.84 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=67.5
Q ss_pred CCEEEEcCCC-CcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLP-SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp-~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+++|||+||| +.+++++|+++|++||.|.+|+|+.++ +| ||||+|.+.++|++|++.|||..|.++++++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PG----AAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TT----CEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 7899999999 899999999999999999999998763 13 99999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
..
T Consensus 76 ~s 77 (205)
T 3tyt_A 76 VS 77 (205)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.80 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=62.2
Q ss_pred CCE-EEEcCCCCcCCHHH----HHHhhcCC-CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SST-LFVEGLPSDCSRRE----VAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~t-LfVgnLp~~~te~e----L~~lF~~f-G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
+.| |||+|||+.+++++ |+++|++| |.|.+|. +| +|||+|.+.++|++|++.|||..+.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG----~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GC----SAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TT----CEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cC----EEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 556 99999999999988 55899999 5999881 13 999999999999999999999999999
Q ss_pred ccccccCCC
Q 028098 206 PNQYQSGST 214 (214)
Q Consensus 206 P~~~~~~~~ 214 (214)
||+++..++
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 999987654
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.3e-15 Score=130.28 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCcCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~----~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
++++|||+|||+++++++|+ ++|++||.|++|+++.+ |+++|||||+|.+.++|++|++.|||..|.+++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 48899999999999999976 99999999999998863 566779999999999999999999999999999
Q ss_pred cccccCC
Q 028098 207 NQYQSGS 213 (214)
Q Consensus 207 ~~~~~~~ 213 (214)
+++.+.+
T Consensus 82 l~v~~a~ 88 (282)
T 3pgw_A 82 MRIQYAK 88 (282)
T ss_pred EEEEEec
Confidence 9987653
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.6e-15 Score=122.14 Aligned_cols=78 Identities=12% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
..++|||+|||.++++++|+++|++||.|..|+|+.++.. |+++|||||+|.+.++|++|++. +|..|.++++.+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS---GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3689999999999999999999999999999999998733 67888999999999999999976 7999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 179 ~a 180 (196)
T 1l3k_A 179 KA 180 (196)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.4e-15 Score=117.45 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc--ccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP--NQY 209 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P--~~~ 209 (214)
.++|||+|||.++++++|+++|++||.|.+++++.++.. |+++|||||+|.+.++|++|++.|||..+.++. +++
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 679999999999999999999999999999999998733 677889999999999999999999999999964 555
Q ss_pred cc
Q 028098 210 QS 211 (214)
Q Consensus 210 ~~ 211 (214)
.+
T Consensus 165 ~~ 166 (167)
T 1fxl_A 165 KF 166 (167)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=4.8e-16 Score=122.18 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ |+|..+.++++.++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT---GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS---STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 3679999999999999999999999999999999998633 6777899999999999999998 89999999999988
Q ss_pred cCC
Q 028098 211 SGS 213 (214)
Q Consensus 211 ~~~ 213 (214)
+..
T Consensus 162 ~a~ 164 (167)
T 2cjk_A 162 RAE 164 (167)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.5e-15 Score=119.32 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=65.3
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++. +..+.++++.++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT---GRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT---SSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC---CCccceEEEEEccHHHHHHHHhc--ccccCCeEccccc
Confidence 689999999999999999999999999999999998633 66777999999999999999985 5566666666554
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=9.2e-16 Score=127.81 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCe--EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i--~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
++++|||+|||+++|+++|+++|++||.| .+|+++.++ |+++|||||+|.+.++|.+||+.|||+.|.+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 37899999999999999999999999999 899998886 34456999999999999999999999999887
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.6e-15 Score=115.50 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.++++|||+|| ++++++|+++|++||.|.+|+|...+ | ||||+|.+.++|++|++.|||..|.++++.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~k-----g----~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35899999996 69999999999999999999996322 4 9999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+.+
T Consensus 106 ~~a~ 109 (121)
T 2bz2_A 106 NIAR 109 (121)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8754
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=2.5e-15 Score=124.32 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++++++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++.++ ..+.++++.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEE
Confidence 58999999999999999999999999999999999864 6778899999999999999997665 589999999887
Q ss_pred CC
Q 028098 212 GS 213 (214)
Q Consensus 212 ~~ 213 (214)
.+
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=3.3e-15 Score=125.12 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
++++|||+|||+ ++++++|+++|++||.|.+|+|+.++. | ||||+|.+.++|++|++.|||..+.++++++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~----g----~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK----E----NALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTS----C----CEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCC----C----EEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 489999999999 999999999999999999999998851 3 9999999999999999999999999999998
Q ss_pred ccC
Q 028098 210 QSG 212 (214)
Q Consensus 210 ~~~ 212 (214)
...
T Consensus 105 ~~a 107 (229)
T 2adc_A 105 TLS 107 (229)
T ss_dssp ECC
T ss_pred EEe
Confidence 754
No 179
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-15 Score=120.20 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=67.2
Q ss_pred CEEEEcCC----CCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecC----HHH----HHHHHH--HhC
Q 028098 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAH----AATAMD--ALQ 198 (214)
Q Consensus 133 ~tLfVgnL----p~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~----~~~----A~~Al~--~Ln 198 (214)
++|||+|| |+.+++.+|+++|++||+|.+|+++.|+.+ |.|+|||||+|.+ +++ |.+|++ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T---g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS---ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT---CCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999999965 8899999999996 433 788888 799
Q ss_pred CCeecccccccc
Q 028098 199 VQSKVVAPNQYQ 210 (214)
Q Consensus 199 G~~l~~~P~~~~ 210 (214)
|..|.++++++.
T Consensus 80 g~~I~Gr~irV~ 91 (136)
T 2j8a_A 80 GCFIMGFKFEVI 91 (136)
T ss_dssp CEEETTEEEEEE
T ss_pred CCeecCcEEEEE
Confidence 999999998864
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=6e-15 Score=107.37 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec--ccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV--VAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~--~~P~~ 208 (214)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|.++++|+ .|+|..+. ++++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 4789999999999999999999999999999999875 2239999999999988 36676554 66665
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
+...
T Consensus 78 v~~a 81 (89)
T 3d2w_A 78 ISNA 81 (89)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=4.3e-15 Score=127.67 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCcC---------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe
Q 028098 131 ASSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS 201 (214)
Q Consensus 131 ~s~tLfVgnLp~~~---------te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~ 201 (214)
.+++|||+||+.++ ++++|+++|++||.|.+|+|+..+ | ||||+|.+.++|+.|+++|||..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 47899999999998 799999999999999999999764 4 99999999999999999999999
Q ss_pred e------------cccccccccCC
Q 028098 202 K------------VVAPNQYQSGS 213 (214)
Q Consensus 202 l------------~~~P~~~~~~~ 213 (214)
| .++++.+++++
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC
T ss_pred EeccccccccccCCCCEEEEEEcc
Confidence 9 89999998875
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.8e-14 Score=108.59 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCC-----cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 131 ~s~tLfVgnLp~-----~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.. .++++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 488999999963 3478999999999999999999988621 145677999999999999999999999999999
Q ss_pred ccccccC
Q 028098 206 PNQYQSG 212 (214)
Q Consensus 206 P~~~~~~ 212 (214)
++.+...
T Consensus 85 ~i~v~~a 91 (105)
T 2pe8_A 85 VVKACFY 91 (105)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9987643
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=9.6e-15 Score=124.82 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec-cccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV-VAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~-~~P~~~ 209 (214)
++++|||+|||.++++++|+++|++||.|++|+|+.++. | ||||+|.+.++|++|++.|||+.|. ++++++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~----g----~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH----D----IAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC----c----EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 478999999999999999999999999999999997651 3 9999999999999999999999999 999999
Q ss_pred ccCCC
Q 028098 210 QSGST 214 (214)
Q Consensus 210 ~~~~~ 214 (214)
.+.++
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 88763
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=7.7e-15 Score=116.49 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHHHHH
Q 028098 73 ISSYSGGQ-SARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (214)
Q Consensus 73 ~~~~~~~~-~~r~~~gg~~G~~~~~~~~~~~gg~~~~~~~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~eL~~ 151 (214)
+..|.+.+ +..++ .++|..+.++.+...-... ........+++|||+|||.++++++|++
T Consensus 58 fV~f~~~~~a~~A~--~l~g~~~~g~~l~v~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 118 (175)
T 1fje_B 58 YVDFESAEDLEKAL--ELTGLKVFGNEIKLEKPKG-----------------RDSKKVRAARTLLAKNLSFNITEDELKE 118 (175)
T ss_dssp EEEESSHHHHHHHH--HGGGEEETTEEEEEECCCC-----------------SSCSTTGGGGEEEEESCCSSCCHHHHHH
T ss_pred EEEECCHHHHHHHH--hcCCCEeCCeEEEEecCCC-----------------ccccccccCCEEEEeCCCCCCCHHHHHH
Confidence 55777753 43566 3888777765543321100 0011122478999999999999999999
Q ss_pred hhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccccCC
Q 028098 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQSGS 213 (214)
Q Consensus 152 lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~~~ 213 (214)
+|++||.|..+ ... |+++|||||+|.+.++|++|++.|||..|.++++++.+.+
T Consensus 119 ~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 119 VFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 99999987665 222 5666799999999999999999999999999999987653
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.6e-14 Score=123.60 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCcC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~~-te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..++|||+|||.++ ++++|+++|++||.|.+|+|+.++. |+++|+|||+|.+.++|++|++.|||..|.++++++
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 37899999999995 9999999999999999999999874 677889999999999999999999999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+..
T Consensus 259 ~~a~ 262 (284)
T 3smz_A 259 SFCA 262 (284)
T ss_dssp EECC
T ss_pred EEec
Confidence 7653
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.7e-15 Score=106.18 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe--ecccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS--KVVAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~--l~~~P~~ 208 (214)
.+++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++| ++.. +.+.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQSL----CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHHT----TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHHH----hcCCceeCCEEEE
Confidence 3789999999999999999999999999999999865 223999999999999754 4443 3666666
Q ss_pred cccC
Q 028098 209 YQSG 212 (214)
Q Consensus 209 ~~~~ 212 (214)
+.+.
T Consensus 72 v~~a 75 (88)
T 1wf0_A 72 ISNA 75 (88)
T ss_dssp EECC
T ss_pred EEec
Confidence 6544
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=2.9e-14 Score=121.92 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQS 211 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~~ 211 (214)
.++|||+|||+++++++|+++|++||.|..|+++.++.. |+++|||||+|.+.++|++|++.|||..+.++++.+.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT---GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC---CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 579999999999999999999999999999999988733 67888999999999999999999999999999998875
Q ss_pred C
Q 028098 212 G 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 172 a 172 (284)
T 3smz_A 172 T 172 (284)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=3e-14 Score=121.66 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
.+++|||+|||+++|+++|+++|++||.|.+|+|..++ | ||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-----g----~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-----G----FGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----c----EEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 47899999999999999999999999999999996553 4 99999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 92 ~a 93 (261)
T 3sde_A 92 FA 93 (261)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=117.93 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCEEEEcCCCC-cCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~-~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+++|||+|||+ ++++++|+++|++||.|.+|+++.++. | ||||+|.+.++|++|++.|||..+.++++++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g----~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK----E----NALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCS----S----CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCC----C----EEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 68999999999 999999999999999999999998851 3 99999999999999999999999999999986
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 75 ~a 76 (198)
T 1qm9_A 75 LS 76 (198)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=2.7e-15 Score=119.13 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 130 ~~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
..+++|||+|||.++++++|+++|++||.+..+.+..... |+++|||||+|.+.++|++|+ .|||..|.++++.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE----ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC----CccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 4589999999999999999999999999876632222222 456669999999999999999 59999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+..
T Consensus 86 ~~~~ 89 (175)
T 1fje_B 86 EKPK 89 (175)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7653
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=111.47 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec-ccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV-VAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~-~~P~~ 208 (214)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. +| +|||+|.+.++|++|++.|||..+. +++++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SS----CEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----Cc----EEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 378999999999999999999999999 99999997653 13 9999999999999999999999999 99999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+.+.+
T Consensus 191 v~~a~ 195 (198)
T 1qm9_A 191 VSFSK 195 (198)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 88754
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=5.9e-14 Score=119.82 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC-Ceec---cccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-QSKV---VAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG-~~l~---~~P~ 207 (214)
+++|||+|||..+|+++|+++|++||.|..|+|+.+++ |+++|||||+|.+.++|.+|++.||+ ..+. ++|+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 67999999999999999999999999999999999963 67788999999999999999999954 4443 7887
Q ss_pred cccc
Q 028098 208 QYQS 211 (214)
Q Consensus 208 ~~~~ 211 (214)
.+.+
T Consensus 172 ~v~~ 175 (261)
T 3sde_A 172 IVEP 175 (261)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7654
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.3e-13 Score=115.35 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec-ccccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV-VAPNQ 208 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~-~~P~~ 208 (214)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. +| ||||+|.+.++|++|++.|||..+. +++++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TT----CEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----Cc----EEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 378999999999999999999999999 99999997642 13 9999999999999999999999999 99999
Q ss_pred cccCC
Q 028098 209 YQSGS 213 (214)
Q Consensus 209 ~~~~~ 213 (214)
+.+.+
T Consensus 222 v~~a~ 226 (229)
T 2adc_A 222 VSFSK 226 (229)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 98765
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.9e-13 Score=101.95 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCcC-----------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 028098 131 ASSTLFVEGLPSDC-----------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (214)
Q Consensus 131 ~s~tLfVgnLp~~~-----------te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG 199 (214)
++++|+|.||.... ++++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~------~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH------PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC------TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC------CCEEEEEEECCHHHHHHHHHHcCC
Confidence 48999999994433 26899999999999999966 4431 345999999999999999999999
Q ss_pred CeecccccccccC
Q 028098 200 QSKVVAPNQYQSG 212 (214)
Q Consensus 200 ~~l~~~P~~~~~~ 212 (214)
..|.++++++...
T Consensus 87 ~~~~gr~l~v~~a 99 (112)
T 2dit_A 87 RWFGGRQITAQAW 99 (112)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCcEEEEEEe
Confidence 9999999988754
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=6.8e-14 Score=120.09 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG-~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+++|||+|||.++++++|+++|++|| .|..|+++.++. |+++|||||+|.+.++|++|++.|||..|.++++.+.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 68999999999999999999999999 999999998874 4556699999999999999999999999999999887
Q ss_pred cC
Q 028098 211 SG 212 (214)
Q Consensus 211 ~~ 212 (214)
+.
T Consensus 193 ~a 194 (292)
T 2ghp_A 193 VS 194 (292)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=8e-14 Score=109.88 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f----G-------~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
+++|||+|||.++|+++|+++|++| | .|.++++..++ | ||||+|.++++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-----g----~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-----T----EEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-----C----EEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 77777775443 3 9999999999999999 89999
Q ss_pred eecccccccccC
Q 028098 201 SKVVAPNQYQSG 212 (214)
Q Consensus 201 ~l~~~P~~~~~~ 212 (214)
.+.+++++++..
T Consensus 74 ~~~g~~i~v~~~ 85 (172)
T 2g4b_A 74 IFQGQSLKIRRP 85 (172)
T ss_dssp EETTEECEEECC
T ss_pred EecCceeeecCC
Confidence 999999988754
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=6.5e-14 Score=120.23 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccccc
Q 028098 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQY 209 (214)
Q Consensus 131 ~s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~ 209 (214)
.+++|||+|||.+ +++++|+++|++||.|..|+|+.+... .|.++|||||+|.+.++|++|+ .|||..|.++++.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 4789999999999 999999999999999999999988640 1566779999999999999999 99999999999998
Q ss_pred ccCC
Q 028098 210 QSGS 213 (214)
Q Consensus 210 ~~~~ 213 (214)
.+..
T Consensus 286 ~~a~ 289 (292)
T 2ghp_A 286 SLAD 289 (292)
T ss_dssp EECC
T ss_pred EEec
Confidence 8764
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=1.6e-13 Score=103.32 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred CCEEEEcCC--CCcC--------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCe
Q 028098 132 SSTLFVEGL--PSDC--------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQS 201 (214)
Q Consensus 132 s~tLfVgnL--p~~~--------te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~ 201 (214)
++.|.+.|+ |.+. .+++|+++|++||.|.+|+|+.++.++. ++++||+||+|.+.++|++|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 789999998 3333 3478999999999999999998874321 3567799999999999999999999999
Q ss_pred eccccccccc
Q 028098 202 KVVAPNQYQS 211 (214)
Q Consensus 202 l~~~P~~~~~ 211 (214)
+.+++++...
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 9999998653
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=4.6e-14 Score=105.98 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=62.6
Q ss_pred EEcCCCCcCCHHHHHHhh------------cCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 136 FVEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 136 fVgnLp~~~te~eL~~lF------------~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
.+.||++++++++|++.| ++||.|.+|+|+.++. |+++|||||+|.++++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888888988888777 9999999999998764 567789999999999999999999999999
Q ss_pred cccccccc
Q 028098 204 VAPNQYQS 211 (214)
Q Consensus 204 ~~P~~~~~ 211 (214)
++++.+..
T Consensus 95 Gr~i~v~~ 102 (104)
T 1jmt_A 95 GQPIHAEL 102 (104)
T ss_dssp TEECCEEE
T ss_pred CEEEEEEE
Confidence 99998754
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=1.5e-13 Score=110.61 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f----G-------~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
+++|||+|||+++++++|+++|++| | .|.++++... +|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~---------~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT---------TTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC---------CCEEEEEeCCHHHHHHHH-HhcCC
Confidence 7899999999999999999999999 5 5666666433 349999999999999999 89999
Q ss_pred eecccccccccC
Q 028098 201 SKVVAPNQYQSG 212 (214)
Q Consensus 201 ~l~~~P~~~~~~ 212 (214)
.|.+++++++..
T Consensus 74 ~~~g~~i~v~~~ 85 (198)
T 2yh0_A 74 IFQGQSLKIRRP 85 (198)
T ss_dssp EETTEEEEEECC
T ss_pred EEcCceEEEeCC
Confidence 999999988764
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=2.8e-13 Score=121.95 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCEEEEcC--CCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 130 DASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 130 ~~s~tLfVgn--Lp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
.++++|||+| |++.+||++|+++|++||.|++|+++..+ | ||||+|.+.++|++|++.|||..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k-----g----faFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC-----S----EEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCccc
Confidence 3588999999 58899999999999999999999886532 4 9999999999999999999999883
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.3e-12 Score=100.51 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCC-----cCCHHHHHHhhcCCCCeEEEEEeeCCCC-CCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESR-HPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 131 ~s~tLfVgnLp~-----~~te~eL~~lF~~fG~i~~vrl~~~k~~-~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
++++|++.|+-. +-.++||++.|++||.|.+|+|+.++.+ ...++++||+||+|.+.++|++|++.|||..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 388999999942 2247899999999999999999998631 1124667899999999999999999999999999
Q ss_pred cccccc
Q 028098 205 APNQYQ 210 (214)
Q Consensus 205 ~P~~~~ 210 (214)
++++..
T Consensus 99 R~i~v~ 104 (118)
T 3ue2_A 99 RKVVAE 104 (118)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 998764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.7e-12 Score=96.09 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=58.4
Q ss_pred CCEEEEcCCC-------CcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 132 s~tLfVgnLp-------~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
.++|-|.-.. .++++++|+++|++||.|++|+|+. +++|||||+|.+.++|+.|++.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3466665443 5689999999999999999999982 2344999999999999999998665 578
Q ss_pred cccccccCC
Q 028098 205 APNQYQSGS 213 (214)
Q Consensus 205 ~P~~~~~~~ 213 (214)
+|+++++.+
T Consensus 80 ~~l~V~~a~ 88 (100)
T 2d9o_A 80 NPLKISWLE 88 (100)
T ss_dssp SBCEEECSS
T ss_pred CeEEEEEcc
Confidence 899988764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=9.6e-11 Score=89.57 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCc----------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 129 PDASSTLFVEGLPSD----------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 129 ~~~s~tLfVgnLp~~----------~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
+.++++|.+.|+=.. -.+++|++.|++||.|.+|.|..+. ++||+||+|.+.++|++|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhC
Confidence 345889999998321 2356789999999999999986653 24499999999999999999999
Q ss_pred CCeeccccccccc
Q 028098 199 VQSKVVAPNQYQS 211 (214)
Q Consensus 199 G~~l~~~P~~~~~ 211 (214)
|..+.++++.+..
T Consensus 77 G~~f~GR~i~v~~ 89 (114)
T 3s6e_A 77 GRWFAGKMITAAY 89 (114)
T ss_dssp TCEETTEECEEEE
T ss_pred CCEECCEEEEEEE
Confidence 9999999988653
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.1e-10 Score=90.47 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCc-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecC-HHHHHHHHHHhC--CCeeccccc
Q 028098 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS-PAHAATAMDALQ--VQSKVVAPN 207 (214)
Q Consensus 132 s~tLfVgnLp~~-~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~-~~~A~~Al~~Ln--G~~l~~~P~ 207 (214)
+..|||+||+.+ +++++|+++|++||.|..|.++.+.. .|||.|.+ .++|+.|++.|| |..|++..+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 889999999999 99999999999999999999999874 79999999 899999999995 566665444
Q ss_pred c
Q 028098 208 Q 208 (214)
Q Consensus 208 ~ 208 (214)
+
T Consensus 89 ~ 89 (121)
T 1owx_A 89 T 89 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=5.1e-10 Score=82.68 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=58.7
Q ss_pred CCEEEEcCCCC----cCCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeec
Q 028098 132 SSTLFVEGLPS----DCSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKV 203 (214)
Q Consensus 132 s~tLfVgnLp~----~~te----~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (214)
..||+|.-++. +.-. .+|.+.|++||.|..+|++.++ +||+|.+.++|.+|++ |||+.+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeC
Confidence 34888877662 2333 6789999999999999999984 8999999999999998 9999999
Q ss_pred ccccccccCC
Q 028098 204 VAPNQYQSGS 213 (214)
Q Consensus 204 ~~P~~~~~~~ 213 (214)
++.++++--+
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999887543
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=5.8e-09 Score=86.53 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=58.2
Q ss_pred cCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccccccc
Q 028098 143 DCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPNQYQ 210 (214)
Q Consensus 143 ~~te~eL~~lF~~fG~i~~vrl~~~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~~~~ 210 (214)
+-.+++|.+.|++||.|.+|.|+.+. ..+..|.++|++||+|.+.++|++|++.|||..+.+++++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~ 208 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 208 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEE
Confidence 34678899999999999999998665 222335788899999999999999999999999999998754
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.7e-09 Score=79.33 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=58.4
Q ss_pred CCEEEEcCCCCc-----CCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 028098 132 SSTLFVEGLPSD-----CSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~-----~te----~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l 202 (214)
..||+|.-++.+ .-. .+|.+.|++||.|..+|++.++ +||+|.+.++|.+||+ |||+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeee
Confidence 349999888743 222 5688999999999999999994 8999999999999998 999999
Q ss_pred ccccccccc
Q 028098 203 VVAPNQYQS 211 (214)
Q Consensus 203 ~~~P~~~~~ 211 (214)
.++.++++-
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 999998864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.4e-06 Score=64.28 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCC-----CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~f-----G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
..++|-+-|||..+++..|+.|.+++ |.|+.+.|+.+.. -|+|+|.+...|.+|.-+|+|+.|.++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecCe
Confidence 36799999999999999999999999 9999999999973 599999999999999999999999988
Q ss_pred cccc
Q 028098 206 PNQY 209 (214)
Q Consensus 206 P~~~ 209 (214)
.++.
T Consensus 91 ~Lr~ 94 (117)
T 2l9w_A 91 VIRS 94 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7754
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.97 E-value=4.5e-05 Score=56.83 Aligned_cols=55 Identities=16% Similarity=0.408 Sum_probs=49.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
...++| ++|.+....||.++|++||.| .|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 567777 999999999999999999965 78888885 89999999999999998773
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.0003 Score=52.87 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCcC-C----HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecccc
Q 028098 132 SSTLFVEGLPSDC-S----RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAP 206 (214)
Q Consensus 132 s~tLfVgnLp~~~-t----e~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P 206 (214)
.++|+|.||+.++ . .+.++++|..|+.+........-. =..|.|.++++|.+|...||++.+.+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCce
Confidence 4699999998865 2 257799999999988766555532 3689999999999999999999999999
Q ss_pred cccccC
Q 028098 207 NQYQSG 212 (214)
Q Consensus 207 ~~~~~~ 212 (214)
+++=.|
T Consensus 76 ~r~YFg 81 (104)
T 1wey_A 76 MKLYFA 81 (104)
T ss_dssp CEEECC
T ss_pred eEEEec
Confidence 887555
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00032 Score=52.30 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=47.9
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
..++| ++|.+....||.++|++||. ..|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999995 488888884 89999999999999999875
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00067 Score=50.88 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCC-----CCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHH----hCCCee
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA----LQVQSK 202 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~f-----G~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~----LnG~~l 202 (214)
.++|.|.|||.++.++-|.-+|+.- |.|..|..... -|+|+|.+.+.|++.|+. |+|+.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-----------~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-----------GGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-----------EEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-----------cEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 5799999999999999999999972 66777766441 699999999999999976 888888
Q ss_pred cccc
Q 028098 203 VVAP 206 (214)
Q Consensus 203 ~~~P 206 (214)
.+.|
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8877
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.34 E-value=0.0014 Score=48.00 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=58.9
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCC-cccEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGD-PLILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~-~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
++|.|.+||++.||+++.+.+++...+.....+..+... +. .-.-|||.|.+.+++..-.+.++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~--~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL--YPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS--TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC--CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 489999999999999999999999988777777776211 11 125799999999999999999999988754
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.0063 Score=46.65 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 131 ~s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
..+.|-|-+.|... ...|...|++||.|.+....... . +-.|.|.++.+|++||. .||..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~-----N----WihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG-----N----WMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS-----S----EEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC-----C----eEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 36788999999996 56677899999999988873221 1 99999999999999995 47766653
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.36 E-value=0.0069 Score=44.83 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcc-cEEEEEecCHHHHHHHHHHhCCCeeccc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPL-ILCFVDFVSPAHAATAMDALQVQSKVVA 205 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~k-g~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (214)
+-+|.|+.||+..||+++.+.++++-.+.....+..+. +.+.+. .-|||.|.+.++...-.+.++|+.+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~--s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADL--SLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCS--SSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCcc--CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 56899999999999999999888876654444443331 111111 3689999999999999999999987664
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.80 E-value=0.0036 Score=58.11 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=42.1
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHH
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~ 195 (214)
.++|||. .|..+++.+|.+.|++||.|..+.+-.++ | .|+.|||.+.++++++++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHHh
Confidence 4799997 79999999999999999999999887665 3 399999999999887754
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.24 E-value=0.0044 Score=47.70 Aligned_cols=38 Identities=11% Similarity=-0.065 Sum_probs=32.8
Q ss_pred CCcccEEEEEecCHHHHHHHHHHh-CCCeecccccccccC
Q 028098 174 GDPLILCFVDFVSPAHAATAMDAL-QVQSKVVAPNQYQSG 212 (214)
Q Consensus 174 G~~kg~aFVeF~~~~~A~~Al~~L-nG~~l~~~P~~~~~~ 212 (214)
.+.+|+++|+|.+.++|++|++.| ||..+.+ ++.+...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 356779999999999999999999 9999888 8776653
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.40 E-value=0.1 Score=48.69 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=48.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~Ln 198 (214)
...++|+ +|..+...+|.++|+.||. .+|+.+.+. +|||.|.+.+.|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4688887 8888899999999999995 478877774 89999999999999999985
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.52 E-value=0.14 Score=39.72 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=43.8
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEE-EEEee---------CC-CCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVS---------KE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVQ 200 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~-vrl~~---------~k-~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~ 200 (214)
...|.|=+.|.+.+.. +.+.|++||.|.+ +.+.. .+ .+-+.=.-..|-.|.|+++.+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4567788888776654 5578999999977 22111 00 000100002388999999999999994 4555
Q ss_pred eecc
Q 028098 201 SKVV 204 (214)
Q Consensus 201 ~l~~ 204 (214)
.|.+
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 5544
No 221
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.05 E-value=1.3 Score=32.05 Aligned_cols=98 Identities=10% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCcccccccccccccccCCCCCCCccccchhhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 028098 34 SGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (214)
Q Consensus 34 ~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~--~~~~~~~-~~~r~~~gg~~G~~~~~~~~~~~gg~~~~~~ 110 (214)
+..+++.--+++.|.. |-.|.+.+++. |.. .+++ |..|... ++-.|+. .|+|..+.++.+...-... .
T Consensus 13 Lp~~~te~~L~~~F~~-~G~v~~v~i~~---d~~-~~kg~afV~f~~~~~A~~Ai~-~l~~~~~~g~~i~V~~a~~-~-- 83 (115)
T 4f25_A 13 LDKSIDNKALYDTFSA-FGNILSCKVVC---DEN-GSKGYGFVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKS-R-- 83 (115)
T ss_dssp CCTTCCHHHHHHHHGG-GSCEEEEEEEE---ETT-EEEEEEEEEESCHHHHHHHHH-HHTTCEETTEECEEEESSC-C--
T ss_pred CCCCCCHHHHHHHHhc-cCCEEEEEEee---cCC-CCCceEEEEECCHHHHHHHHH-HcCCCEECCEEEEEEECCC-c--
Confidence 3344554445554432 45566666663 432 2343 5678775 4446776 7888888776543311100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCcCCHHH
Q 028098 111 AKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRRE 148 (214)
Q Consensus 111 ~~~r~~g~~~~~p~~~~p~~~s~tLfVgnLp~~~te~e 148 (214)
..+.. .........++|||+|||+++|++.
T Consensus 84 -~~~~~-------~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 -KEREA-------ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -CC-----------------------------------
T ss_pred -ccccc-------ccccccCCCCceEeCCCCCCccccc
Confidence 00000 0000111356899999999999874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=55.31 E-value=26 Score=23.18 Aligned_cols=67 Identities=6% Similarity=0.159 Sum_probs=40.3
Q ss_pred EEEEcCC-CCcCCHHHHHHhhcCCCCe-----EEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeccccc
Q 028098 134 TLFVEGL-PSDCSRREVAHIFRPFVGY-----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVVAPN 207 (214)
Q Consensus 134 tLfVgnL-p~~~te~eL~~lF~~fG~i-----~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~~P~ 207 (214)
+|||..= -..+...+|..++..-+.+ -.+++..+ |.||+-.. +.|+.+++.|++..+.++++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcCceE
Confidence 4555311 2345666777766655543 35555433 89999875 56888999999999999988
Q ss_pred ccccC
Q 028098 208 QYQSG 212 (214)
Q Consensus 208 ~~~~~ 212 (214)
.+...
T Consensus 70 ~v~~~ 74 (76)
T 2g0c_A 70 KVNKA 74 (76)
T ss_dssp CEEEC
T ss_pred EEEEC
Confidence 77543
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.81 E-value=24 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=37.0
Q ss_pred EEEEcCCCCc---------CCHHHHHHhh--cCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHH
Q 028098 134 TLFVEGLPSD---------CSRREVAHIF--RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190 (214)
Q Consensus 134 tLfVgnLp~~---------~te~eL~~lF--~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A 190 (214)
+..|-|+|.. .+..+|++.| ..|..++ |+.+.++.+|++ ++.|+|.+.-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g-----~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSG-----TAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEE-----EEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCce-----eEEEEecCChHH
Confidence 6777788862 3457899977 9998875 666666656664 999999875443
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=30.61 E-value=6.8 Score=35.43 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=12.3
Q ss_pred HHHhhcCCCCeEEE
Q 028098 149 VAHIFRPFVGYKEV 162 (214)
Q Consensus 149 L~~lF~~fG~i~~v 162 (214)
|..||.+++.|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 67899999998877
No 225
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=28.77 E-value=1.3e+02 Score=19.85 Aligned_cols=65 Identities=9% Similarity=0.222 Sum_probs=45.4
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecC----HHHHHHHHHHh--CCCeecccc
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAHAATAMDAL--QVQSKVVAP 206 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~----~~~A~~Al~~L--nG~~l~~~P 206 (214)
.+|.|.++....-...|...+...-.|..+.+-... + .+.|.|.. .+...++++.+ .||......
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~-----~----~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~ 75 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN-----R----SAIVVYNASSVTPESLRKAIEAVSPGLYRVSITS 75 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT-----T----EEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCC
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC-----C----EEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeC
Confidence 467788887665566788999999889888775553 2 68888863 45666777766 257665443
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.71 E-value=1.1e+02 Score=19.15 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecCHHHHHHHHHHhCCCeecc
Q 028098 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVQSKVV 204 (214)
Q Consensus 132 s~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (214)
..+|.|.++.-.-=...|...+.. ..|..+.+-... + -+.|+|.+.++..++++.+ ||.+..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-----~----~~~v~~~~~~~i~~~i~~~-Gy~~~~ 67 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-----A----VVAGNKEDVDKYIKAVEAA-GYQAKL 67 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-----E----EEEEEGGGHHHHHHHHHHT-TCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-----C----EEEEEECCHHHHHHHHHHc-CCceEe
Confidence 357889999887777888888888 888888765443 1 6788888666777777654 666543
No 227
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=28.04 E-value=1.4e+02 Score=22.21 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCCeEEEEEeeCCCCCCCCCcccEEEEE-ecCHHHHHHHHHHhC
Q 028098 156 FVGYKEVRLVSKESRHPGGDPLILCFVD-FVSPAHAATAMDALQ 198 (214)
Q Consensus 156 fG~i~~vrl~~~k~~~~gG~~kg~aFVe-F~~~~~A~~Al~~Ln 198 (214)
+-.|.+|++-.|-.- --.||. |-+.++.+.++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 578999999888631 134555 545555455555444
No 228
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.92 E-value=1.1e+02 Score=18.53 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=39.2
Q ss_pred CEEEEcCCCCcCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcccEEEEEecC---HHHHHHHHHH
Q 028098 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS---PAHAATAMDA 196 (214)
Q Consensus 133 ~tLfVgnLp~~~te~eL~~lF~~fG~i~~vrl~~~k~~~~gG~~kg~aFVeF~~---~~~A~~Al~~ 196 (214)
.++.|.++.-.--...+...+.....|..+.+-... + -+.|+|.. .+...++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL-----E----QAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC-----C----EEEEEECCCCCHHHHHHHHHH
Confidence 467888888777778889999999889888776554 2 57788743 4445555543
Done!