BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028100
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 146/214 (68%)
Query: 1 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
+ TG+AI + S+ S + + S PL + L V F+LGTAYS++LP LRWK +A MC
Sbjct: 180 VNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMC 239
Query: 61 MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
++ V ++ Q +F++H Q +V GRP++ TRPLIFA A +S S V++L KDIPD +GDK
Sbjct: 240 ILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKI 299
Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
FG +S S LG++ V CV L AY V+++VGA+S F K++S++GH LA LW R
Sbjct: 300 FGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWAR 359
Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
A++VDLS+ S YMFIWKLFYAEYLL+ FL+
Sbjct: 360 AKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 200 bits (508), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 145/213 (68%)
Query: 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 61
TG+A+ + S + ++ S PL L + F+LGTAYS++LPFLRWK +A +C+
Sbjct: 192 ATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCI 251
Query: 62 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQF 121
+ V ++ Q +FF+H Q +V RP V TRPLIFA A ++ S V++L KDIPD +GD+ F
Sbjct: 252 LAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIF 311
Query: 122 GFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRA 181
G +S S +LG++ V +CV L AY V++++GA+S+ K +++GH+ LA +LW R+
Sbjct: 312 GIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRS 371
Query: 182 QTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
+++DL++ + SFYMFIWKLFYAEYLLI +R
Sbjct: 372 RSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 129/208 (62%)
Query: 7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 66
IT + + L A + S PL + + + ++ +AY+VDLP LRWK P L + +
Sbjct: 203 ITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVA 262
Query: 67 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSI 126
+ FF+H Q V RP RPLIF AI+S + V++L KDIPD +GD++FG QS+
Sbjct: 263 VTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSL 322
Query: 127 SSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL 186
S +LG + V +CV L YGV+++VGA+S K+++++GH+ LA +LW A++VDL
Sbjct: 323 SLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDL 382
Query: 187 SNNASTYSFYMFIWKLFYAEYLLIHFLR 214
++N +SFYMFIWKL AEY LI R
Sbjct: 383 TSNVVLHSFYMFIWKLHTAEYFLIPLFR 410
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 127/212 (59%)
Query: 3 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 62
TG+ I+ S S PLI L+V TAYS+D+P LRWK PF+A MCM+
Sbjct: 198 TGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMI 257
Query: 63 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFG 122
+ + L S+F H Q VL RP+ R L F A ++ S ++L KDIPD +GDK+ G
Sbjct: 258 STWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHG 317
Query: 123 FQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ 182
S + +LG++ +CV A+GV ++ GAS S K+ + +G++ LA +LW +A+
Sbjct: 318 IDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAK 377
Query: 183 TVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
+VDLS+ AST SFYMFIWKL YA + L+ +R
Sbjct: 378 SVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 37 LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAA 96
LGT YSV P LR K P A + + TV G + F + H + LG P + P+ F
Sbjct: 211 LGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFIT 267
Query: 97 AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 156
+ ++ + V+++ KD+PD +GD++F ++++KLG N+ L L Y VS I A
Sbjct: 268 SFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAF 326
Query: 157 SSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWKLFYAEYLLIHFL 213
Q+ + + I H LA L + ++ +N + +Y FIW LFYAEYLL FL
Sbjct: 327 YMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 37 LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAA 96
LGT YSV P R K P A + + TV G + F + + + LG + P+ F
Sbjct: 204 LGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFIT 260
Query: 97 AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG-- 154
++ + V+++ KD+PD +GD+++ ++++KLG N+ L L Y ++ V
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320
Query: 155 ASSSFQLVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 208
+F+ +V + H+ LA F W+ Q + S Y Y FIW LFYAEY+
Sbjct: 321 MPQAFRRTVMVPV--HAALAVGIIFQTWVLEQAKYTKDAISQY--YRFIWNLFYAEYI 374
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 103 SAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 152
+A ++KDI D DGD++ G Q++ +G R+ L A S++
Sbjct: 175 TATREIIKDIEDLDGDRKEGLQTLPIVIGVTPAYRVATGVLLVAVIASIV 224
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Query: 49 RWKTKPFLAGMCMVTVFGLVYQFS-FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 107
++K PFL + + + G ++ F F + + +++ P +FA T++
Sbjct: 121 KFKGIPFLGNLSVAYLSGSIFLFGGFLVGPESFLVMLP-------LFAITFFGTLA--RE 171
Query: 108 LLKDIPDEDGDKQFGFQSISSKLG--KENVLR--------LCVYALFFAYGVS--VIVGA 155
LLKD D +GD+ G +++ ++G K +VL LC + F +GV V++G
Sbjct: 172 LLKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVIFVLFAVLCSFVPFLTWGVVYLVLIGV 231
Query: 156 SSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFL 213
+F L+ + + T T ++N +TY Y LF +LL+ L
Sbjct: 232 VDAFILLVTLRALKFET---------STELTASNCTTYLKYGMFAALFV--FLLMEIL 278
>sp|Q9X1I9|SECY_THEMA Protein translocase subunit SecY OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=secY PE=1
SV=1
Length = 431
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 36/135 (26%)
Query: 40 AYSVDLPFLRWKTKPFLAGMCMVTVFGLVY----QFSFFIHFQKYVLGR----------P 85
AY L L W FL + ++T+FG++ + I + + V GR P
Sbjct: 206 AYLGGLNLLEWI---FLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLP 262
Query: 86 VVITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY 141
+ + + P+IFA+AI+S SA+ S+ + ++ + GF L L +Y
Sbjct: 263 IKVNQGGVIPIIFASAIVSIPSAIASITNNETLKNLFRAGGF------------LYLLIY 310
Query: 142 AL---FFAYGVSVIV 153
L FF Y SV++
Sbjct: 311 GLLVFFFTYFYSVVI 325
>sp|Q9B6D0|CYB_YARLI Cytochrome b OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=COB PE=3 SV=1
Length = 385
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP--VVITRPLIF 94
LG +VD + P+ + ++TVF + F+ F+ F LG P + P++
Sbjct: 210 LGITSNVD----KLSMHPYYSFKDLITVFAFLLMFTLFVFFSPDKLGHPDNYIPANPMVT 265
Query: 95 AAAIIST--ISAVMSLLKDIPDEDG 117
A+I+ + ++L+ IPD+ G
Sbjct: 266 PASIVPEWYLLPFYAILRAIPDKLG 290
>sp|Q7GEV4|CYB_CANPA Cytochrome b OS=Candida parapsilosis GN=COB PE=3 SV=1
Length = 384
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 37 LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP--VVITRPLIF 94
LG +VD R P+ +VTVF + FS F+ + LG P + PL+
Sbjct: 210 LGITGNVD----RLPMHPYFIFKDLVTVFVFLLVFSLFVFYSPNTLGHPDNYIPGNPLVT 265
Query: 95 AAAIIST--ISAVMSLLKDIPDEDG 117
+I+ + ++L+ IPD+ G
Sbjct: 266 PPSIVPEWYLLPFYAILRSIPDKLG 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,767,844
Number of Sequences: 539616
Number of extensions: 2606789
Number of successful extensions: 7239
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7225
Number of HSP's gapped (non-prelim): 37
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)