Query 028100
Match_columns 214
No_of_seqs 184 out of 463
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 6.5E-65 1.4E-69 448.9 25.5 214 1-214 67-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 5.3E-53 1.1E-57 378.8 25.8 209 2-214 98-306 (308)
3 TIGR01476 chlor_syn_BchG bacte 99.8 1.7E-19 3.7E-24 159.4 20.2 144 2-155 83-226 (283)
4 PRK12872 ubiA prenyltransferas 99.8 1.1E-18 2.4E-23 153.6 21.1 152 7-167 86-238 (285)
5 PRK13105 ubiA prenyltransferas 99.8 2.2E-18 4.7E-23 153.5 21.2 130 14-154 95-224 (282)
6 PRK13595 ubiA prenyltransferas 99.8 3.1E-18 6.8E-23 153.1 19.7 167 13-204 107-273 (292)
7 PRK12392 bacteriochlorophyll c 99.8 4.7E-18 1E-22 154.4 19.8 147 2-158 95-248 (331)
8 TIGR02056 ChlG chlorophyll syn 99.8 9E-18 1.9E-22 150.7 21.1 141 2-152 99-245 (306)
9 PF01040 UbiA: UbiA prenyltran 99.8 1.6E-17 3.5E-22 141.9 20.6 124 2-137 70-193 (257)
10 COG0382 UbiA 4-hydroxybenzoate 99.8 5.9E-17 1.3E-21 143.7 22.7 191 2-210 94-284 (289)
11 PRK06080 1,4-dihydroxy-2-napht 99.8 2.4E-17 5.2E-22 146.1 20.0 144 3-157 88-235 (293)
12 PRK05951 ubiA prenyltransferas 99.8 1.1E-16 2.5E-21 142.8 23.8 164 24-198 115-278 (296)
13 PRK13591 ubiA prenyltransferas 99.8 1.8E-17 4E-22 148.9 18.1 176 2-189 99-278 (307)
14 PRK07566 bacteriochlorophyll/c 99.8 6.5E-17 1.4E-21 145.6 21.1 141 2-151 110-250 (314)
15 PLN00012 chlorophyll synthetas 99.8 8.1E-17 1.8E-21 148.5 21.5 139 3-151 169-313 (375)
16 PRK07419 1,4-dihydroxy-2-napht 99.8 5.7E-17 1.2E-21 145.8 18.1 140 7-157 102-241 (304)
17 PRK12884 ubiA prenyltransferas 99.7 2.6E-16 5.6E-21 138.5 21.1 140 2-156 82-221 (279)
18 PRK12882 ubiA prenyltransferas 99.7 2.3E-16 5E-21 139.0 20.7 132 2-147 83-214 (276)
19 TIGR02235 menA_cyano-plnt 1,4- 99.7 1.2E-16 2.6E-21 142.4 18.9 140 7-157 89-228 (285)
20 TIGR00751 menA 1,4-dihydroxy-2 99.7 6.6E-16 1.4E-20 137.6 21.8 137 10-157 89-231 (284)
21 PLN02922 prenyltransferase 99.7 7.3E-16 1.6E-20 139.2 20.8 131 23-157 121-255 (315)
22 PRK13387 1,4-dihydroxy-2-napht 99.7 5.4E-16 1.2E-20 140.0 19.7 145 7-156 97-255 (317)
23 TIGR01475 ubiA_other putative 99.7 3.4E-15 7.4E-20 132.0 20.8 177 2-194 83-259 (282)
24 PLN02809 4-hydroxybenzoate non 99.7 4.8E-15 1E-19 132.4 19.5 181 2-200 92-273 (289)
25 PRK09573 (S)-2,3-di-O-geranylg 99.7 8.5E-15 1.8E-19 129.3 20.2 132 2-149 82-213 (279)
26 PRK12875 ubiA prenyltransferas 99.6 5.9E-15 1.3E-19 131.5 16.5 130 11-154 100-229 (282)
27 PRK13106 ubiA prenyltransferas 99.6 3.7E-14 7.9E-19 127.4 19.9 188 2-201 96-283 (300)
28 PRK12888 ubiA prenyltransferas 99.6 1.1E-13 2.4E-18 123.2 22.0 177 2-196 86-263 (284)
29 PRK12847 ubiA 4-hydroxybenzoat 99.6 5.9E-14 1.3E-18 124.4 19.6 173 2-194 92-265 (285)
30 PRK12895 ubiA prenyltransferas 99.6 1.3E-13 2.8E-18 123.1 20.9 178 2-196 84-262 (286)
31 TIGR01474 ubiA_proteo 4-hydrox 99.6 1.4E-13 3.1E-18 122.1 20.1 175 2-195 87-261 (281)
32 PRK12883 ubiA prenyltransferas 99.6 1.7E-13 3.8E-18 120.8 20.3 125 2-142 82-206 (277)
33 PRK12886 ubiA prenyltransferas 99.5 1.6E-12 3.5E-17 116.1 20.8 175 2-194 89-264 (291)
34 PRK12876 ubiA prenyltransferas 99.5 5E-12 1.1E-16 113.8 22.0 186 2-200 94-283 (300)
35 PRK12874 ubiA prenyltransferas 99.5 4.5E-12 9.8E-17 113.3 20.9 176 2-195 94-269 (291)
36 PRK12870 ubiA 4-hydroxybenzoat 99.5 1.6E-12 3.4E-17 116.1 17.9 181 2-201 93-276 (290)
37 PRK12848 ubiA 4-hydroxybenzoat 99.5 6.1E-12 1.3E-16 111.6 19.5 180 2-200 89-269 (282)
38 PRK12878 ubiA 4-hydroxybenzoat 99.5 8.5E-12 1.8E-16 112.7 20.2 177 2-197 119-295 (314)
39 PRK12871 ubiA prenyltransferas 99.4 8E-11 1.7E-15 105.7 19.7 167 2-192 97-273 (297)
40 PRK12869 ubiA protoheme IX far 99.4 2.3E-10 5E-15 101.4 21.1 129 2-143 83-212 (279)
41 COG1575 MenA 1,4-dihydroxy-2-n 99.3 5.2E-11 1.1E-15 107.0 16.6 138 8-156 105-242 (303)
42 PRK13592 ubiA prenyltransferas 99.3 4.6E-11 1E-15 107.2 15.6 131 2-146 91-229 (299)
43 TIGR01473 cyoE_ctaB protoheme 99.2 2.1E-09 4.6E-14 95.0 20.7 184 2-201 82-269 (280)
44 PRK04375 protoheme IX farnesyl 99.2 2.8E-09 6.1E-14 95.3 20.0 130 2-145 91-222 (296)
45 PRK12873 ubiA prenyltransferas 99.2 2.1E-09 4.4E-14 96.6 19.1 184 2-201 91-280 (294)
46 PRK13362 protoheme IX farnesyl 99.0 6.2E-08 1.3E-12 87.4 20.6 125 2-139 94-219 (306)
47 PLN02776 prenyltransferase 97.7 0.01 2.2E-07 54.7 20.8 124 2-142 76-205 (341)
48 PRK08238 hypothetical protein; 97.1 0.012 2.6E-07 56.4 13.5 105 2-123 273-377 (479)
49 PRK12324 phosphoribose diphosp 97.0 0.0054 1.2E-07 55.4 10.1 59 2-66 93-151 (295)
50 KOG4581 Predicted membrane pro 94.0 0.079 1.7E-06 46.9 4.4 55 105-159 244-298 (359)
51 COG0109 CyoE Polyprenyltransfe 90.7 5.8 0.00013 36.2 12.2 120 2-139 99-224 (304)
52 KOG1381 Para-hydroxybenzoate-p 88.7 3.8 8.3E-05 37.3 9.3 178 5-201 151-332 (353)
53 PRK12884 ubiA prenyltransferas 76.8 10 0.00022 33.2 7.1 39 101-140 48-89 (279)
54 TIGR02056 ChlG chlorophyll syn 75.5 24 0.00053 31.7 9.3 43 100-143 64-109 (306)
55 COG0382 UbiA 4-hydroxybenzoate 74.9 24 0.00053 31.2 9.0 34 100-133 57-93 (289)
56 PRK12324 phosphoribose diphosp 74.8 21 0.00045 32.3 8.6 45 100-144 56-104 (295)
57 PF01040 UbiA: UbiA prenyltran 69.4 47 0.001 27.8 9.2 34 101-134 34-68 (257)
58 PRK13362 protoheme IX farnesyl 65.4 1.1E+02 0.0023 27.7 13.1 41 100-140 57-101 (306)
59 PRK12872 ubiA prenyltransferas 65.2 86 0.0019 27.3 10.3 25 99-123 45-69 (285)
60 PRK12882 ubiA prenyltransferas 62.7 81 0.0018 27.6 9.6 41 102-143 50-93 (276)
61 PRK13595 ubiA prenyltransferas 61.3 1.3E+02 0.0028 27.3 11.6 41 98-139 55-98 (292)
62 TIGR01476 chlor_syn_BchG bacte 58.7 46 0.001 29.2 7.4 38 102-140 50-90 (283)
63 PLN00012 chlorophyll synthetas 56.9 76 0.0016 29.7 8.8 30 101-131 134-163 (375)
64 PRK09573 (S)-2,3-di-O-geranylg 56.5 73 0.0016 28.0 8.3 41 101-142 48-91 (279)
65 TIGR01475 ubiA_other putative 56.5 33 0.00071 30.2 6.1 40 100-139 46-89 (282)
66 PRK12869 ubiA protoheme IX far 56.2 84 0.0018 27.8 8.6 40 101-140 47-90 (279)
67 PRK12887 ubiA tocopherol phyty 54.2 96 0.0021 28.0 8.8 23 109-132 72-94 (308)
68 PRK12875 ubiA prenyltransferas 52.5 1.1E+02 0.0024 27.3 8.9 19 107-125 62-80 (282)
69 cd00867 Trans_IPPS Trans-Isopr 52.3 13 0.00027 31.3 2.6 32 107-138 163-204 (236)
70 PLN02809 4-hydroxybenzoate non 51.2 82 0.0018 28.2 7.8 27 106-132 61-88 (289)
71 PRK13106 ubiA prenyltransferas 51.2 87 0.0019 28.3 8.0 21 102-122 61-81 (300)
72 PRK07566 bacteriochlorophyll/c 50.5 46 0.00099 30.0 6.1 40 102-142 77-119 (314)
73 PRK12883 ubiA prenyltransferas 49.2 68 0.0015 28.1 6.9 35 104-139 51-88 (277)
74 PRK12888 ubiA prenyltransferas 46.5 2.1E+02 0.0046 25.4 10.4 20 103-122 52-71 (284)
75 PRK04375 protoheme IX farnesyl 44.1 1.4E+02 0.0031 26.5 8.2 38 103-140 57-98 (296)
76 PF09964 DUF2198: Uncharacteri 43.4 46 0.00099 24.3 4.0 39 4-43 27-65 (74)
77 TIGR01473 cyoE_ctaB protoheme 42.3 2.1E+02 0.0046 25.0 9.0 41 101-141 46-90 (280)
78 PRK10133 L-fucose transporter; 42.3 2E+02 0.0043 26.6 9.2 77 126-202 84-164 (438)
79 PRK13591 ubiA prenyltransferas 41.5 2.8E+02 0.0061 25.4 10.9 22 100-121 68-89 (307)
80 TIGR01474 ubiA_proteo 4-hydrox 40.6 83 0.0018 27.8 6.1 38 103-140 53-94 (281)
81 TIGR00886 2A0108 nitrite extru 40.0 2.1E+02 0.0045 24.6 8.5 20 129-148 63-82 (366)
82 PRK12847 ubiA 4-hydroxybenzoat 37.9 2.8E+02 0.0061 24.3 10.1 39 102-140 57-99 (285)
83 PRK12873 ubiA prenyltransferas 37.7 1.8E+02 0.0039 26.3 7.9 39 101-139 55-97 (294)
84 PRK12895 ubiA prenyltransferas 37.1 1.7E+02 0.0036 26.3 7.5 15 107-121 54-68 (286)
85 PRK08238 hypothetical protein; 36.5 2E+02 0.0043 27.8 8.4 46 100-145 236-285 (479)
86 PF06645 SPC12: Microsomal sig 35.2 1.4E+02 0.003 21.5 5.5 24 5-28 14-37 (76)
87 PRK12392 bacteriochlorophyll c 32.5 3.7E+02 0.0079 24.6 9.1 38 107-145 67-107 (331)
88 PRK10581 geranyltranstransfera 32.2 38 0.00082 30.5 2.6 43 102-144 213-268 (299)
89 PRK13592 ubiA prenyltransferas 31.6 4.1E+02 0.0088 24.3 13.4 41 101-142 57-100 (299)
90 TIGR00899 2A0120 sugar efflux 29.2 3.7E+02 0.008 23.1 10.0 19 183-201 315-333 (375)
91 TIGR00890 2A0111 Oxalate/Forma 29.2 3.5E+02 0.0077 22.9 8.3 20 129-148 64-83 (377)
92 TIGR00880 2_A_01_02 Multidrug 28.8 2.1E+02 0.0046 20.1 8.8 17 130-146 25-41 (141)
93 PF07178 TraL: TraL protein; 28.2 1.3E+02 0.0028 22.4 4.5 36 12-55 26-61 (95)
94 PF06645 SPC12: Microsomal sig 28.1 2.3E+02 0.005 20.3 7.0 30 131-160 5-34 (76)
95 COG2119 Predicted membrane pro 27.9 3.9E+02 0.0085 22.9 8.1 119 34-172 20-145 (190)
96 KOG4112 Signal peptidase subun 24.7 2.8E+02 0.0062 21.3 5.7 45 3-49 27-72 (101)
97 PRK12870 ubiA 4-hydroxybenzoat 23.0 5.4E+02 0.012 22.8 8.4 21 102-122 58-78 (290)
98 PRK06099 F0F1 ATP synthase sub 22.7 3.9E+02 0.0085 21.2 8.4 27 167-197 49-75 (126)
99 PRK12876 ubiA prenyltransferas 22.7 3.9E+02 0.0085 24.3 7.4 16 107-122 64-79 (300)
100 TIGR00769 AAA ADP/ATP carrier 22.4 7E+02 0.015 24.0 11.4 25 127-151 68-92 (472)
101 TIGR02332 HpaX 4-hydroxyphenyl 22.2 4.9E+02 0.011 23.5 8.0 73 128-200 68-141 (412)
102 PRK10473 multidrug efflux syst 21.8 5.1E+02 0.011 22.7 8.0 70 129-201 64-137 (392)
103 PRK12871 ubiA prenyltransferas 21.7 5.9E+02 0.013 22.8 9.0 14 107-120 58-71 (297)
104 PRK09705 cynX putative cyanate 21.5 4.5E+02 0.0098 23.5 7.6 45 129-173 70-114 (393)
105 PRK12886 ubiA prenyltransferas 21.0 4.8E+02 0.01 23.2 7.5 32 106-138 58-94 (291)
106 PRK11102 bicyclomycin/multidru 20.3 5.7E+02 0.012 22.1 9.5 17 129-145 256-272 (377)
107 TIGR00900 2A0121 H+ Antiporter 20.1 5.3E+02 0.012 21.7 8.7 21 129-149 60-80 (365)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=6.5e-65 Score=448.93 Aligned_cols=214 Identities=50% Similarity=0.905 Sum_probs=207.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100 1 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 80 (214)
Q Consensus 1 ~~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~ 80 (214)
.++|+.++.++.++|+.+++..|++|+++++..++++|++||+|+||+|+||+|+++++|+.++|+.++|+|+|.|++++
T Consensus 67 ~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~ 146 (280)
T PLN02878 67 VATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence 37899999999999999999999889999998999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 028100 81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 160 (214)
Q Consensus 81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~ 160 (214)
++|++..+++++++.+.++++|+.+++++||+||+||||++|+||+|+++|+|+++++|+.++.+||++++.+|++++..
T Consensus 147 ~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~ 226 (280)
T PLN02878 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFL 226 (280)
T ss_pred HhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99988888889999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 028100 161 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214 (214)
Q Consensus 161 ~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~p~~~ 214 (214)
+++.+|+.||++++..+|+|+++||++||++++|||||||||||+||+++|+.|
T Consensus 227 ~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 227 WSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=5.3e-53 Score=378.80 Aligned_cols=209 Identities=34% Similarity=0.611 Sum_probs=195.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++++.++.++.++|+.+++..| ++.++..+++.+++++|| .||+|+||+|+++++|++.++|.++++|.|.|.+...
T Consensus 98 ~~a~~~~~~~~~lal~la~~~~-~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~ 174 (308)
T PRK12887 98 RQGQRIVIITGILALILAALLG-PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL 174 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999865 677777778999999999 5999999999999999999999999999998876544
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
+.+..+++++++.++++.+++.+++++||+||+||||+.|+||+|+++|+|++.++|+.++.++|+..++.|+.+...+
T Consensus 175 -~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~ 253 (308)
T PRK12887 175 -GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV 253 (308)
T ss_pred -hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5555677888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~p~~~ 214 (214)
++..++.||++++..+|+|++++|++||+||+|||||||||||+||+++|+.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 254 NPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999975
No 3
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.84 E-value=1.7e-19 Score=159.39 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++..+...+..+++.++...+.+.......++.+++++|| .||+|+||++++++..+....+.....+ +...
T Consensus 83 ~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~-----~~~~ 155 (283)
T TIGR01476 83 REVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMA-----GHAI 155 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHH-----HHHH
Confidence 57788888889999999888776654544557888899999 5999999999988876554322111111 1111
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 155 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~ 155 (214)
.+ + .+...++....+++++.+++..||+||+||||+.|+||+|+++|+|++.+++..++.++|...+....
T Consensus 156 ~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 226 (283)
T TIGR01476 156 FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL 226 (283)
T ss_pred hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2 33444555566778899999999999999999999999999999999999999999888877764333
No 4
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=1.1e-18 Score=153.65 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCcc-ccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Q 028100 7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 85 (214)
Q Consensus 7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPl-RlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~ 85 (214)
.......+|+.+.....+++......++.++++.||. ||. |+||.|..+|.++...+|.....+.+.+. +
T Consensus 86 l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-----~-- 156 (285)
T PRK12872 86 LNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-----Q-- 156 (285)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-----c--
Confidence 3444445555554444557666666678889999995 665 79999999999999888755544332221 1
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 028100 86 VVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLV 165 (214)
Q Consensus 86 ~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~ 165 (214)
..++...+....+.....+..++.||+||+||||+.|+||+|+++|+|++.+++..+....++..+........++....
T Consensus 157 ~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (285)
T PRK12872 157 LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLV 236 (285)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 12334455566677778899999999999999999999999999999999999999999988888765555433333333
Q ss_pred HH
Q 028100 166 SI 167 (214)
Q Consensus 166 ~~ 167 (214)
..
T Consensus 237 ~~ 238 (285)
T PRK12872 237 LL 238 (285)
T ss_pred HH
Confidence 33
No 5
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=2.2e-18 Score=153.51 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=98.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHHH
Q 028100 14 TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 93 (214)
Q Consensus 14 lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l~ 93 (214)
.++.+... ++++.+....++++.++.|| .||.|+|++|+.++++..........+|.+.. +. ..+...+
T Consensus 95 ~~l~l~~~-~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~------~~--~~~~~~~ 163 (282)
T PRK13105 95 FLVVLLAV-GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVLA------GA--PFTAALW 163 (282)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHHh------hc--cccHHHH
Confidence 45555443 45665555568999999999 59999999999999765554332222333221 22 2334556
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100 94 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 154 (214)
Q Consensus 94 ~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g 154 (214)
+....+.+++.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..|
T Consensus 164 l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 164 AVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778889999999999999999999999999999999999999999999988877544
No 6
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.81 E-value=3.1e-18 Score=153.07 Aligned_cols=167 Identities=22% Similarity=0.308 Sum_probs=103.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHH
Q 028100 13 LTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 92 (214)
Q Consensus 13 ~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l 92 (214)
.+++++++..+ +.......++.+++++|| .||+|+|++|+++|+|... .+ .+.+. +..+.|.+. +...
T Consensus 107 ~~~l~la~~l~-~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g--~p~~~----~~~~~g~~~--~~~~ 174 (292)
T PRK13595 107 PFLLYLALLLP-PAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAA-YA--LPLAL----PALALGAPV--PWPP 174 (292)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHH-HH--HHHHH----HHHHcCCcc--hHHH
Confidence 34667777755 444445557889999999 5999999999999998632 22 12211 222223221 1122
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 028100 93 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHST 172 (214)
Q Consensus 93 ~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~ 172 (214)
+ ....+++.+.+++||+||+||||+.|+||+|+++|+|++.++|..+..++-.... ....+.... ......+
T Consensus 175 -l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~--~~~~~~~~~---~~~~~~~ 246 (292)
T PRK13595 175 -L--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW--PVSRLTALA---LWLICGG 246 (292)
T ss_pred -H--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH--HhcchHHHH---HHHHHHH
Confidence 2 2235677999999999999999999999999999999999999866655422222 111222221 2222222
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 028100 173 LAFLLWLRAQTVDLSNNASTYSFYMFIWKLFY 204 (214)
Q Consensus 173 l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~ 204 (214)
.+.-+| -|.+..++=..+=.|+|--+-
T Consensus 247 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 273 (292)
T PRK13595 247 MALALW-----RRPTPETAHRLYPLSIVTPWI 273 (292)
T ss_pred HHHHHh-----cCCCHHHHhccchHHHHHhHH
Confidence 222233 555555555556666775443
No 7
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.80 E-value=4.7e-18 Score=154.37 Aligned_cols=147 Identities=16% Similarity=0.269 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 74 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g-------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f 74 (214)
++++.....+..+|+.++..++ +++.+...+++.+++++||. ||+|+||+++.++..+....+.....+
T Consensus 95 ~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~-- 170 (331)
T PRK12392 95 KEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLS-- 170 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHH--
Confidence 4566777777777766666543 23333444578889999995 999999999888776444433222111
Q ss_pred HHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100 75 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 154 (214)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g 154 (214)
.....+ ..+.+.+.......+++.+++++||++|+||||+.|+||+|+++|+|++++++.....+..+..+..+
T Consensus 171 ---~~a~~g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~ 244 (331)
T PRK12392 171 ---ANALFS---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLA 244 (331)
T ss_pred ---HHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111223 23445555666677889999999999999999999999999999999999999877767766666666
Q ss_pred Hhhh
Q 028100 155 ASSS 158 (214)
Q Consensus 155 ~~~~ 158 (214)
....
T Consensus 245 ~~~~ 248 (331)
T PRK12392 245 WSWG 248 (331)
T ss_pred HHhc
Confidence 6543
No 8
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.80 E-value=9e-18 Score=150.65 Aligned_cols=141 Identities=19% Similarity=0.296 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQ------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 75 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~ 75 (214)
+++......+..+|+.++.... +++.+...+++.+++++||. ||+|+||++++|+..+....+.....+.+
T Consensus 99 ~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~~- 175 (306)
T TIGR02056 99 PEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAGH- 175 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence 3555566666666666655432 24445555678889999995 99999999999987655443322222211
Q ss_pred HHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 028100 76 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 152 (214)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~ 152 (214)
. +.+ .++...++....+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++...|...+.
T Consensus 176 -a---~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~ 245 (306)
T TIGR02056 176 -A---LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA 245 (306)
T ss_pred -H---HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 234455566667788999999999999999999999999999999999999999888887766554
No 9
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.79 E-value=1.6e-17 Score=141.88 Aligned_cols=124 Identities=29% Similarity=0.459 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++++.....+.++++.+++..+ ++......++.+++++|| ||+|+||++++++.++..+.+.....|.+..
T Consensus 70 ~~~~~~~~~~~~l~l~l~~~~~-~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~----- 140 (257)
T PF01040_consen 70 RQALIFALILLLLGLLLALLLG-PWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA----- 140 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc-----
Confidence 4677788888899999887766 555555556777889999 9999999999999988887765544444421
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 137 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~ 137 (214)
+. ..+.+.+....+..++...+...+|++|+||||+.|+||+|+++|+|++..
T Consensus 141 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 141 -GG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred -CC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 22 124455566566678888888999999999999999999999999999998
No 10
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.78 E-value=5.9e-17 Score=143.73 Aligned_cols=191 Identities=20% Similarity=0.271 Sum_probs=148.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++|+.+.+.+.++++.+++..+... +.....+.++.++|. ++||.+.+++.++..+.+.....|....
T Consensus 94 ~~a~~~~~~~~~~~~~~a~~l~~~~-~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~----- 161 (289)
T COG0382 94 KEALLLAILLLLLGLALALLLNPLA-FLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAAV----- 161 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHHH-----
Confidence 5789999999999999999977433 555568999999994 8999999999999888776655555422
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
+.. .+.+.+++..+..+++.+.+++||+||+||||+.|+||.|+++|+|++.+++.... .........+......
T Consensus 162 -~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~- 236 (289)
T COG0382 162 -GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL- 236 (289)
T ss_pred -hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc-
Confidence 211 33455666677789999999999999999999999999999999999999998777 4444444444432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhh
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI 210 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~ 210 (214)
...-..++...+..+++|.+.+|.++++....++..-..+-.......
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T COG0382 237 -GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284 (289)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence 146677888888999999999999988888888888777666655543
No 11
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.78 E-value=2.4e-17 Score=146.13 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=106.9
Q ss_pred hHHHHHHHHHH----HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHH
Q 028100 3 TGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 78 (214)
Q Consensus 3 ~~~~iv~~~~~----lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~ 78 (214)
+++.....+.. +|+++.... +++.....+++.+++++|| .||.|+|+++ +|+..+....|.....+.+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~~~~~~~~~-~ 162 (293)
T PRK06080 88 QVKRAAIAFFGLAALLGLYLVAVS-GWWLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLVIVLGTYYL-Q 162 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHHHHHHHHHH-h
Confidence 44444444444 445554443 3555655567888999999 5999999998 577766666664444433211 2
Q ss_pred HHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 79 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
+ ...+.+.++......+++..+.+.||+||+||||+.|+||+|+++|+|++.+++..+..++|+..+...+..
T Consensus 163 ~------~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 163 A------GTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred c------CCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123456667777888999999999999999999999999999999999999999999999999888776654
No 12
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.78 E-value=1.1e-16 Score=142.82 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Q 028100 24 SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 103 (214)
Q Consensus 24 ~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l~~~~~f~~~fa 103 (214)
+++.+...+++..+++.||. ||+|+|+++ +|...+....|.....|.+.. ++ + .++.+.+.......+.+
T Consensus 115 ~~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~ 184 (296)
T PRK05951 115 GIGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WL---G---NLSSPNLLAGVPLGLLM 184 (296)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-Hh---C---cccHHHHHHHHHHHHHH
Confidence 35555555688999999995 999999987 777666666665555555433 22 1 12334445555667778
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 104 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQT 183 (214)
Q Consensus 104 ~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 183 (214)
..+...||+||+|+||+.|+||+|+++|+|++ ++.......+|+..+...+....++.......++-.....+.++.++
T Consensus 185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~ 263 (296)
T PRK05951 185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRK 263 (296)
T ss_pred HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999 77667777788877766666533444455566666666666677777
Q ss_pred ccCCCchhHHHHHHH
Q 028100 184 VDLSNNASTYSFYMF 198 (214)
Q Consensus 184 vd~~~~~~~~~fy~~ 198 (214)
.|.++++...+.++.
T Consensus 264 ~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 264 FPPDPDEATVQLFML 278 (296)
T ss_pred CcccccHHHHHHHHH
Confidence 787777777777765
No 13
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.77 E-value=1.8e-17 Score=148.95 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC--CCCc--cccccchhhHHHHHHHHhhhhhhHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV--DLPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 77 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~--~lPP--lRlKr~pll~~l~I~~v~~~iv~~g~f~~~ 77 (214)
+.+....+.+.++|+++++..| ++.+ .+++.+.++.||. ..|| +|+|+.+..||+.++...|.....+ .
T Consensus 99 ~~a~~ls~la~llGl~La~~~g-~~ll--~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~ 171 (307)
T PRK13591 99 KIGLLVSLLAFLLGTYILAMDG-MLLL--AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----A 171 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHH--HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----H
Confidence 3467778888899999998855 4432 3578889999994 2225 5999999999999988887533211 1
Q ss_pred HHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 78 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
+... +. + .+......+.....++++++||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus 172 g~~~-~~---~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g 246 (307)
T PRK13591 172 GSYC-GS---L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG 246 (307)
T ss_pred Hhhh-hh---H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 10 1 11112222333344788899999999999999999999999999999999999999998888666665
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 028100 158 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNN 189 (214)
Q Consensus 158 ~~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~~ 189 (214)
-.++...+.+-+-.+-...+|+-+++.|-+++
T Consensus 247 ~l~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 278 (307)
T PRK13591 247 VIAFEPIILLYSFVCGLICIQVYSSPFENEPS 278 (307)
T ss_pred HhccCchhhHHHHHHHHHHHHHHcCCcccCcH
Confidence 44555555555555555666766766655543
No 14
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.77 E-value=6.5e-17 Score=145.55 Aligned_cols=141 Identities=21% Similarity=0.285 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+..+|+.++...+ ++.....+++.+++++||. ||+++||++++++..+....+.+...+- +..
T Consensus 110 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g-----~~~ 181 (314)
T PRK07566 110 RWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG-----AAA 181 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH-----HHH
Confidence 5677788888888988888866 5545444567888999995 9999999999898876554432222211 111
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 151 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i 151 (214)
.+ +...+...++.....++.+.++...||++|+|+||+.|+||+|+++|+|++.+++..++...|...+
T Consensus 182 ~~-~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 182 FG-AGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred hc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 12 1123445556666667788899999999999999999999999999999999999888888887764
No 15
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.77 E-value=8.1e-17 Score=148.50 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHH
Q 028100 3 TGLAITLTLSLTSLAIALSLQ------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 76 (214)
Q Consensus 3 ~~~~iv~~~~~lg~~la~~~g------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~ 76 (214)
++......+..+++.++..+. ++..+...+++.+++++||. ||+++||++++|++.+.+..+.+..++. +
T Consensus 169 ~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~lp~~~g--~ 244 (375)
T PLN00012 169 EVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAG--Q 244 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHHHHHHHH--H
Confidence 344433444444444444431 23344444568888999995 9999999999999764333321111111 1
Q ss_pred HHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100 77 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 151 (214)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i 151 (214)
.+.| .++...++....+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++.+.+...+
T Consensus 245 ---a~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 245 ---ALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred ---HHcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 1212 23445556666778899999999999999999999999999999999999999876766655433
No 16
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.75 E-value=5.7e-17 Score=145.78 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 028100 7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPV 86 (214)
Q Consensus 7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~ 86 (214)
......++|+++.... +|+++....++.+++++||. ||+|+|++| +|...+....|.+...|.|.. |+ .
T Consensus 102 ~~~~a~~~Gl~L~~~~-g~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv-~t------~ 170 (304)
T PRK07419 102 FLLLGLLGILAIALQS-DWTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAALYS-QT------P 170 (304)
T ss_pred HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-hc------C
Confidence 3344556667777664 47777666789999999995 999999999 588777777775555555422 32 2
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 87 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 87 ~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
.++...+......++.+..+...||+||+|.||+.|+||+|+++|+|++.++...+...+|+..+......
T Consensus 171 ~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g 241 (304)
T PRK07419 171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG 241 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777788899999999999999999999999999999999999999999999999888665554
No 17
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=2.6e-16 Score=138.51 Aligned_cols=140 Identities=20% Similarity=0.280 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++++.....+.++|+.++...+ +......+++.++++.||. ++||++++++.++....+.....|.. ..
T Consensus 82 ~~a~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~-----~~ 150 (279)
T PRK12884 82 REALLLAILLFILGLIAAYLIS-PLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGI-----AV 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHH-----Hh
Confidence 5678888888999999888876 4444444567888999995 79999999998877766533332222 11
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 156 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~ 156 (214)
+... .+.+.......+++.+.++.||+||+||||+.|+||+|+++|+|++.+++.......++..+..+..
T Consensus 151 -~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12884 151 -GELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF 221 (279)
T ss_pred -CCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1344444556677888899999999999999999999999999999999988887777665544443
No 18
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=2.3e-16 Score=139.02 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++|+.+++.++ +.......++.+++++||. |+||+|.++|.++....|....+|.. .
T Consensus 83 ~~a~~~~~~l~~~g~~~~~~l~-~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~------~ 150 (276)
T PRK12882 83 RGALAFSILLFAAGVALAFLLP-PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA------A 150 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH------H
Confidence 5788888999999999988866 4334434466777999995 89999999999877666543333321 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 147 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y 147 (214)
.+... +.+.+.......+.....++.||+||+||||+.|+||+|+++|+|++.+++........
T Consensus 151 ~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~ 214 (276)
T PRK12882 151 VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAV 214 (276)
T ss_pred hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHH
Confidence 13111 11222333344456778899999999999999999999999999999998776655443
No 19
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.75 E-value=1.2e-16 Score=142.41 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 028100 7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPV 86 (214)
Q Consensus 7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~ 86 (214)
...+..++|.++....| |+++....++.+.++.||. ||+++|++| +|...+....|.+...|.|. .|+ .
T Consensus 89 ~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt------~ 157 (285)
T TIGR02235 89 FLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQS------Q 157 (285)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhC------C
Confidence 33445566677777644 7777666789999999995 999999999 57777777777555555542 233 2
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 87 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 87 ~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
.++...+......++.+..+...||+||+|.||+.|+||+|+++|+|++.++...++..+|+..+..-...
T Consensus 158 ~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 228 (285)
T TIGR02235 158 SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG 228 (285)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777888999999999999999999999999999999999999999999999999877554543
No 20
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.74 E-value=6.6e-16 Score=137.59 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 028100 10 TLSLTSLAIALSLQSP------PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLG 83 (214)
Q Consensus 10 ~~~~lg~~la~~~g~~------~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~ 83 (214)
.+.++|+++.+..| + ++.....++.+.+++||. ||.|+|++| +|...+....|.+...|.+. .|+
T Consensus 89 ~a~~~Gi~l~~~~~-~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~---- 159 (284)
T TIGR00751 89 LGALSGLVLALLAA-PNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQA---- 159 (284)
T ss_pred HHHHHHHHHHHhcc-cchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH-Hhc----
Confidence 34456677766644 4 454555588999999995 999999999 67777777777555555542 233
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 84 RPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 84 ~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
..++...++......+.+..+...|++||+|+||+.|+||+|+++|+|++.++...++..+|...+......
T Consensus 160 --~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~ 231 (284)
T TIGR00751 160 --HRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLAT 231 (284)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123444555566677888999999999999999999999999999999999999999999998777655543
No 21
>PLN02922 prenyltransferase
Probab=99.73 E-value=7.3e-16 Score=139.21 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC-CC---cCcHHHHHHHHH
Q 028100 23 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGR-PV---VITRPLIFAAAI 98 (214)
Q Consensus 23 g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~-~~---~~~~~l~~~~~f 98 (214)
++|+++....++.+.+++||. ||+|+|++|+ |-..+....|.+...|.| ..|+..++. +. .++...+.....
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp 196 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL 196 (315)
T ss_pred cChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence 457777766789999999995 9999999995 555555555644445544 223311111 01 234566778888
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100 99 ISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 157 (214)
Q Consensus 99 ~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~ 157 (214)
+.+.+..+...||+||+|.||+.|+||+|+++|+|++.++...++..+|+..+...+..
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 255 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK 255 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999888666554
No 22
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.72 E-value=5.4e-16 Score=140.05 Aligned_cols=145 Identities=13% Similarity=0.124 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC--
Q 028100 7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGR-- 84 (214)
Q Consensus 7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~-- 84 (214)
...++.++|++++...| ++.+....++.+++++||. ||+++||+| +|...+....|.....|.+. .|+...+.
T Consensus 97 ~~~ia~~~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~ 171 (317)
T PRK13387 97 MYVVAAILGVYLCMNTS-WLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIES 171 (317)
T ss_pred HHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHH
Confidence 34455556666887755 6666666689999999995 999999999 88887777777554444432 23211010
Q ss_pred -----C-CcC--c----HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 028100 85 -----P-VVI--T----RPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 152 (214)
Q Consensus 85 -----~-~~~--~----~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~ 152 (214)
+ .++ + .++++......+....+...||+||+|+||+.|+||+|+++|+|++.++...+...+|+..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~ 251 (317)
T PRK13387 172 LLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAV 251 (317)
T ss_pred HHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHH
Confidence 0 000 0 012235666778888899999999999999999999999999999999999999999987765
Q ss_pred HHHh
Q 028100 153 VGAS 156 (214)
Q Consensus 153 ~g~~ 156 (214)
.-..
T Consensus 252 ~v~~ 255 (317)
T PRK13387 252 IVLM 255 (317)
T ss_pred HHHH
Confidence 5444
No 23
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.70 E-value=3.4e-15 Score=132.05 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=120.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++++.++...+......+ ..+..+.+.|+ .+||+..+++++.....+.....|.... +
T Consensus 83 ~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a~--~-- 151 (282)
T TIGR01475 83 KEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVAV--I-- 151 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHHH--h--
Confidence 46667777777777777776553333333 35666789998 4899999999876655554333333211 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
|. .......+.......+++...++.||++|+||||+.|+||+|+++|+|++.+++.....+.+......+......+
T Consensus 152 -g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (282)
T TIGR01475 152 -GT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY 229 (282)
T ss_pred -CC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 22 1111223334445567888899999999999999999999999999999999988888777777776666543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS 194 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~ 194 (214)
.-..+..+.+..++++.+.+|.+|+++..+
T Consensus 230 ---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 230 ---IALLALILIGLILAYEHYIVDPGDQSKIQR 259 (282)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 122355555667788888999888876654
No 24
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.68 E-value=4.8e-15 Score=132.40 Aligned_cols=181 Identities=20% Similarity=0.132 Sum_probs=123.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++..+...+.++|+.+.+..+. .......++.++...|+ .+||+..++++..... .+.+...+.. .+
T Consensus 92 ~~A~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~----~~~~~l~g~~-av 159 (289)
T PLN02809 92 FQGVGFLGAQLLLGLGILLQLNN-YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLT----FNWGALLGWA-AV 159 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHH----HHHHHHHHHH-HH
Confidence 57888899999999999988764 33333446777889998 4999999888753332 2233322211 12
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
-|.. .. .+.........+++.+-.+.++.+|+|+||+.|++|+|+++|+|+..+++. ....++......|... ..
T Consensus 160 ~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~ 234 (289)
T PLN02809 160 KGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GL 234 (289)
T ss_pred hCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cC
Confidence 1321 11 222223333445677778999999999999999999999999998888875 5555666666666543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH-HHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIW 200 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~-fy~~iw 200 (214)
+.... .+|++.+..+++|.+.+|++|+++..+ |.+..|
T Consensus 235 ~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 235 GWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKW 273 (289)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence 33333 489999999999999999999887644 444333
No 25
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.67 E-value=8.5e-15 Score=129.34 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++|+.++...+ +.......++.+++++||. ++||++.++|.++....|.....|....
T Consensus 82 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~----- 150 (279)
T PRK09573 82 KEAKIFSITLFIVGLILSIFIN-IYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV----- 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5788888899999999888766 4434334467778999995 7999999999998888775544443221
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 149 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~ 149 (214)
+. ...+. +......+++.++++.||+||+|+||+.|+||+|+++|+|++.+++.....+....
T Consensus 151 -~~---~~~~~-~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~ 213 (279)
T PRK09573 151 -FN---VLRII-ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL 213 (279)
T ss_pred -cc---chHHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH
Confidence 21 11222 33334456778899999999999999999999999999999999886555544333
No 26
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.65 E-value=5.9e-15 Score=131.50 Aligned_cols=130 Identities=23% Similarity=0.369 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcH
Q 028100 11 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 90 (214)
Q Consensus 11 ~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~ 90 (214)
+..+++.+....+ +......+...+++++||. ||+|+|++|+.+..+ .... .+...+-|. .++ + ..++
T Consensus 100 ~~~l~l~l~~~~~-~~~~~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~-~g~~-~~~~~~~y~-~~t---g---~~~~ 167 (282)
T PRK12875 100 SGALALAFLLVLP-PAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLS-NGLY-ILPGVAAYA-LVS---G---SLPP 167 (282)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcC--CCccchhccHHHHHH-HHHH-HHHHHHHHH-HHc---C---CCcH
Confidence 4455555554422 3333334567899999995 999999999877643 1111 111111111 111 1 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100 91 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 154 (214)
Q Consensus 91 ~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g 154 (214)
..++.. ..+++.++.++||+||+|+||+.|+||+|+++|+|++.+++......+-...+.+|
T Consensus 168 ~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 168 LLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 443333 25788999999999999999999999999999999999888766555544444444
No 27
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=3.7e-14 Score=127.40 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=118.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++..+.....+.++.++...+......+. ++.++...|+ .+||+..++++.+....+.....|.....+...
T Consensus 96 ~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~ 168 (300)
T PRK13106 96 SEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVAVLGLYA 168 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 467777766667777777766643433333 4556677898 489999999998777766544444432211100
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
.......+.+.++......+++.+.+++||++|+|+||+.|+||+|+++| |++.+++..+....-......|......+
T Consensus 169 ~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~ 247 (300)
T PRK13106 169 NSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP 247 (300)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 00000111222233334567889999999999999999999999999999 88888877666665555555555432111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 201 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwk 201 (214)
.-. .+=.+....+.+|.+.+|.+ ++.-+.|.+..|-
T Consensus 248 ~y~---~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 248 IAI---AATILHGLIMAYAYYLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHH---HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence 111 12224455566788888877 6666777776654
No 28
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=1.1e-13 Score=123.24 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++++.....+...++.++...+..... ...++++....|+ ..||+..+++.......+.....|....
T Consensus 86 ~~a~~~~~~~~~~~l~l~~~l~~~~~~-l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a~----- 153 (284)
T PRK12888 86 RTAWTGALVALAVFLGAAALLNPLCLA-LAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIAV----- 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHHH-----
Confidence 466777777777777777665532232 2335566678998 5899988888765544443332332211
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
... .+.+.++......+++.+.++.+|++|+|+||+.|+||+|+++|+|++.+++.....+.++.....|......+
T Consensus 154 -~g~--~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~ 230 (284)
T PRK12888 154 -TGT--WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA 230 (284)
T ss_pred -cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 112 23334455556678899999999999999999999999999999999998776665555555555555532221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHH-HHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY 196 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~-~fy 196 (214)
.-.+ +=.+.+..+.+|.+.+|.+|++... .|+
T Consensus 231 ~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 231 LWWI---GLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHH---HHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 1111 2235566677899999999877664 654
No 29
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.62 E-value=5.9e-14 Score=124.42 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=115.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++..+...+.++|+.+++..+ +..+....++.++.+.|+ -.||+..++........+.....|....
T Consensus 92 ~~a~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~l~~~~a~----- 159 (285)
T PRK12847 92 KQALILLFILLLIALVILLLLN-KTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMGILMAFAAV----- 159 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHHHHHHHHHH-----
Confidence 5778888889999998888765 444444557778899998 3888887777654333332222222111
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-hHh
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS-SFQ 160 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~-~~~ 160 (214)
+. ..+.+.++......+++.+.++.+|++|+|+||+.|++|+|+++|+|++.+++.......++..+. +... ...
T Consensus 160 -~g--~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 235 (285)
T PRK12847 160 -QN--QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLHN 235 (285)
T ss_pred -cC--CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCcH
Confidence 22 233444455556678899999999999999999999999999999999999887776666555442 3222 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 028100 161 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS 194 (214)
Q Consensus 161 ~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~ 194 (214)
+. -.++++....++++.+.+|.+|+++..+
T Consensus 236 ~~----y~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (285)
T PRK12847 236 IF----YLAILAAAGIFYYQYKLLDFDNPANCMY 265 (285)
T ss_pred HH----HHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11 1233344456777888898887654433
No 30
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.61 E-value=1.3e-13 Score=123.15 Aligned_cols=178 Identities=17% Similarity=0.103 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++++.....+.++++.++..++......+ ..+..+...|+ .+||+..+.++.+..+.+.....|... +
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v 151 (286)
T PRK12895 84 REAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----V 151 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----H
Confidence 57888888999999888887664333322 34555556666 799999999886655555322222211 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
+.+..++...++......+++.+.++++|.+|+|+||+.|+||+|+++|+|+..+++......+-......|....
T Consensus 152 -~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~--- 227 (286)
T PRK12895 152 -IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR--- 227 (286)
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 2222222222334445567899999999999999999999999999999999987775555444444444554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFY 196 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy 196 (214)
...--.|=.+.+..+.+|.+.+|.+|.++. .+|+
T Consensus 228 -~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 228 -TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 122234555666778889999999988877 5533
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.60 E-value=1.4e-13 Score=122.06 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++|+.+++..+ +........+.++.+.|+ .+||+..+++.......+.....|.+. +
T Consensus 87 ~~a~~~~~~~~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~ 154 (281)
T TIGR01474 87 RQAILFLLVQLLVALGVLLQLN-PLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMGWAA-----V 154 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHHHHH-----H
Confidence 5778888999999999988866 444444457788899998 499999888875444333333333221 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
.. ..+.+.++......+++.+.++.+|++|+|+||+.|+||+|+++|+|+..+.+.......+.. ...+.....
T Consensus 155 -~g--~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 228 (281)
T TIGR01474 155 -TG--DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAGL-- 228 (281)
T ss_pred -cC--CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhCC--
Confidence 11 223333334445567888999999999999999999999999999998765544433333332 233333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF 195 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~f 195 (214)
+.... .+-.+.+..+.++...+|.+|+++..++
T Consensus 229 ~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (281)
T TIGR01474 229 GPVYY-LGLAAAALLLIRQIATLDIRDPENCLKL 261 (281)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 11111 2222345555566777777666654433
No 32
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.60 E-value=1.7e-13 Score=120.77 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++..+...+.++|+.++...|. ..+.....+..++++||. |+||++.++|..+....|.....|... +
T Consensus 82 ~~a~~~~~~l~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~ 150 (277)
T PRK12883 82 KAALYYSLLLFAVGLALAYLINI-EAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V 150 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h
Confidence 46777788888899888887664 434334456778999995 899999889998877776443333321 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 142 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~l 142 (214)
+. .+...+.. .+..++.+.+++.||++|+||||+.|+||+|+++|+|++.+++...
T Consensus 151 -~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 151 -GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred -cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 21 11222221 2234556788999999999999999999999999999998876544
No 33
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.53 E-value=1.6e-12 Score=116.07 Aligned_cols=175 Identities=19% Similarity=0.156 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.+.++.++...+...... ...+..+...|+ .+||+..+++.......+.....|.+ . +
T Consensus 89 ~~A~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~~l~g~~-a-~--- 156 (291)
T PRK12886 89 GSAILFIVLSSLLMLFAAWFLNPLCLYL-SPPALFFLLLYS------YCKRFTALAHVVLGFCLALAPLGAWI-A-I--- 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh------hhhccccccHHHHHHHHHHHHHHHHH-H-H---
Confidence 4566665556666666655555333333 334666789999 37999999987655554433222222 1 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
... .+.+.++......++..+.++.++++|.|+||+.|+||+|+++|+|++.+++.......+......+......+
T Consensus 157 -~g~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (291)
T PRK12886 157 -RGT--IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP 233 (291)
T ss_pred -cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 112 23333344444566788888999999999999999999999999999998876666666565555554432111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC-chhHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYS 194 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~-~~~~~~ 194 (214)
.-.+ +-.+....+.++.+.++.+| +++-.+
T Consensus 234 ~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (291)
T PRK12886 234 WFLA---GLAVTGILLLYEHWLLRGGDLTRLDAA 264 (291)
T ss_pred HHHH---HHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 1111 11123333335677777766 334434
No 34
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.51 E-value=5e-12 Score=113.75 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.+.++.++..++...... ..+++++...|| .+||+..+++.....+.+. -+++.+.. +
T Consensus 94 ~~A~~~~~~~~~~~~~l~~~ln~l~~~l-~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~-~~l~~~~A----v 161 (300)
T PRK12876 94 NFSMLLLTLCSFLFLSLCWLLNPLCFSL-AVLSTLLMIIYP------YTKRVTFLCHWILGLVYYL-AILMNFFA----I 161 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------hHhcCCchhHHHHHHHHHH-HHHHHHHH----H
Confidence 5677777777777777777766333333 336677779999 6999999998743333332 22222211 1
Q ss_pred hcCCCcCcH--HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100 82 LGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 159 (214)
Q Consensus 82 ~~~~~~~~~--~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~ 159 (214)
-+.+..+.. ..++.+.....+..+..++++.+|+|+||+.|+||+|+++|+|++.+++.....+.-...+..|.....
T Consensus 162 ~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l 241 (300)
T PRK12876 162 IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSN 241 (300)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122211100 112223334455667889999999999999999999999999998777765555554555555555322
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH-HHHH
Q 028100 160 QLV-KLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIW 200 (214)
Q Consensus 160 ~~~-~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy-~~iw 200 (214)
.+. -.....+.+ ......+|.+.+|-++++.-.+|+ +..|
T Consensus 242 ~~~~y~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ 283 (300)
T PRK12876 242 KKIFYLCSLVPLT-VILKTIKHYSLIDKKKSTLEQKFFLGNIY 283 (300)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHhcCH
Confidence 221 111221222 222234555767665555444444 3344
No 35
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.50 E-value=4.5e-12 Score=113.31 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++++.++..++....... +..+.....|+ .+||+..++++......+.....|... +
T Consensus 94 ~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G~~a-----v 161 (291)
T PRK12874 94 KSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAGVVA-----V 161 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHHHHH-----H
Confidence 46777777777888888877665444444 45666788999 389999999887666555443344322 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
++. .+.+.++......+++.+.++.++++|+|+||+.|++|+|+++|+|++.++...............|......
T Consensus 162 -~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (291)
T PRK12874 162 -LGE--IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG- 237 (291)
T ss_pred -cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence 222 2222334444557899999999999999999999999999999999988775443333333333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF 195 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~f 195 (214)
.....+-.+-+..++++.+.++.+++++-+.|
T Consensus 238 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f 269 (291)
T PRK12874 238 --LFAYLGVIVSALILLYEHYLVRKDFKKIDKAF 269 (291)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 11223444445566777777776555544443
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.50 E-value=1.6e-12 Score=116.07 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++........++|+.++..++......+ ..+.++...|+ -.||+..++++......+..+..|... +
T Consensus 93 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~a-----~ 160 (290)
T PRK12870 93 KVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFAVLISWSA-----V 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhh------hhhhccccceeeehHHHHhHHHHHHHH-----H
Confidence 57788888889999988888764333333 35666788998 278887777765555545433333221 1
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
... .+.+.++......+++.+.++.++++|+|+|++.|++|+|+++|+|+..+++.....+. ......|......
T Consensus 161 -~g~--~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~-~~l~~~~~~~~~~- 235 (290)
T PRK12870 161 -TGH--LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTV-GFLAILGVLLELH- 235 (290)
T ss_pred -cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHH-HHHHHHHHHhCCc-
Confidence 111 23334455556678899999999999999999999999999999999988776333222 2222334432111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCCchh-HHHHHHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTV--DLSNNAS-TYSFYMFIWK 201 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~v--d~~~~~~-~~~fy~~iwk 201 (214)
.... .+-......+.++.+++ |.+|+++ -+-|.+..|-
T Consensus 236 -~~y~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 236 -LPFW-IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence 1111 12223344556677778 7777754 4556555554
No 37
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.47 E-value=6.1e-12 Score=111.61 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++|+.++...+ +......+.+.++.+.|+ ..||+..++++......+..+..|....
T Consensus 89 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g~~a~----- 156 (282)
T PRK12848 89 KEALALFVVLVLVAFLLVLTLN-TLTIWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMAFAAV----- 156 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHHHHHH-----
Confidence 5677888888888888887765 333333346777789996 3788887887755555554333333221
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
+. ..+.+.++......++........+++|+|+||+.|++|+|+++|+|++.+++....... ......+.....
T Consensus 157 -~~--~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 230 (282)
T PRK12848 157 -QG--SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATL-ALLAWAGWLLGL-- 230 (282)
T ss_pred -hC--CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHH-HHHHHHHHHhcC--
Confidence 22 223333344344556677777888999999999999999999999999887764333332 222233333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIW 200 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy~~iw 200 (214)
+... ..+-.+....+.++.+.+|.+|+++. ..|++..|
T Consensus 231 ~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~ 269 (282)
T PRK12848 231 GWAY-YWGLLVAAALFVYQQKLIRDREREACFKAFLNNNW 269 (282)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence 1111 12223455556677889998877654 55555444
No 38
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.47 E-value=8.5e-12 Score=112.69 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
+++......+.++|+.+....| ++.....+++.++.+.|+ -.||+..++......+.+.....|++. ++
T Consensus 119 ~~a~~~~~~~~~~g~~l~~~~~-~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g~~a--~~-- 187 (314)
T PRK12878 119 KQAKVFMVLQALVGLAVLLQFN-WFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMGWAA--HF-- 187 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHHHHH--Hh--
Confidence 4677778888888988888754 544444457788899997 388866555443222222222223222 11
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 161 (214)
| . ++...+.......++..+.+..++++|+|+||+.|+||+|+++|+|++.+++.......... ...+......+
T Consensus 188 -g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 262 (314)
T PRK12878 188 -G-S--LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM-GLAFWLAGVPL 262 (314)
T ss_pred -C-C--CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH-HHHHHHhcCcH
Confidence 2 2 22233333334566788888999999999999999999999999999988875544444332 22332221122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 197 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~ 197 (214)
.-.+.... +...+.+|.+++|.+++++-.++++
T Consensus 263 ~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 263 LALLGLLA---AAAHLAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHHHH---HHHHHHHHHHHcccCChHHHHHHHH
Confidence 22222222 2233667888888887776444443
No 39
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.37 E-value=8e-11 Score=105.65 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHHHHHHHHcCCCCccccccc----h---hhHHHHHHHHhhhhhhH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTK----P---FLAGMCMVTVFGLVYQF 71 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~---~l~~~~~~~~~lg~~YS~~lPPlRlKr~----p---ll~~l~I~~v~~~iv~~ 71 (214)
+++..+...+.++|+.++.....+ ..+...+.+.++++.|+ +||+ | +.|+... +. .+.
T Consensus 97 ~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~-------~~kr~~~~p~~~l~G~~~~----~~-~~~ 164 (297)
T PRK12871 97 KNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQ-------VKKRNQKYPVAQLLGRTDF----TL-FPA 164 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccccccHHHHHHHHHH----HH-HHH
Confidence 456667777777777776654432 23333346778888998 4554 5 3454432 11 121
Q ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100 72 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 151 (214)
Q Consensus 72 g~f~~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i 151 (214)
..+. ++ | ..+...+....+..+++...++.||++|+|||++.|+||+|+++|+|++.+.......+.....+
T Consensus 165 ~g~~--~~---g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~ 236 (297)
T PRK12871 165 AGYL--CY---G---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI 236 (297)
T ss_pred HHHH--Hh---C---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH
Confidence 1122 11 2 22344455556667789999999999999999999999999999999998665544444433332
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH
Q 028100 152 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST 192 (214)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~ 192 (214)
+... ..........=.+.+..+.+|.+..+-+||++.
T Consensus 237 --~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 237 --FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred --HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 2222 112111111113344456677777777777654
No 40
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.35 E-value=2.3e-10 Score=101.44 Aligned_cols=129 Identities=12% Similarity=0.193 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 80 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~-~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~ 80 (214)
+++..+...+.++|+.++.. .+..+.....+........||. ++||++. .|..+....|...+++-+.. +
T Consensus 83 ~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g~~a-~-- 153 (279)
T PRK12869 83 KEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAGYAS-G-- 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHHHHH-H--
Confidence 56777888888888888876 5533333333455567889995 7999997 46666666554444433322 1
Q ss_pred HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHH
Q 028100 81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 143 (214)
Q Consensus 81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll 143 (214)
.+. .+...++......++..+.....+..|.|.||+.|+||+|++.|+|++.+.+....
T Consensus 154 --~g~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~ 212 (279)
T PRK12869 154 --TGS--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISN 212 (279)
T ss_pred --hCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHH
Confidence 111 23333444445555666665556778999999999999999999999987765443
No 41
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.34 E-value=5.2e-11 Score=106.98 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 028100 8 TLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVV 87 (214)
Q Consensus 8 v~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~ 87 (214)
...+.++++...... +|..+....+|.+.|+.|+ -+|.++.+.| +|-+.+....|.+...|.| +.|+ ..
T Consensus 105 ~~g~~llg~~~~~~s-~~~~l~lG~l~~~~g~~YT--gGp~PlgY~g-LGEi~~~vffG~l~v~g~~-yiqt------~~ 173 (303)
T COG1575 105 LAGLALLGVILAALS-DWLVLLLGLLCIAAGILYT--GGPFPLGYMG-LGEIFVGVFFGPLIVLGAY-YIQT------GR 173 (303)
T ss_pred HHHHHHHHHHHHHHh-hhHHHHHHHHHHHheeeec--cCCcCcccCC-HHHHHHHHHHHHHHHHHHH-HHhc------cc
Confidence 334445555555553 3554555568999999999 5999999999 4544444445544333333 2232 23
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028100 88 ITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 156 (214)
Q Consensus 88 ~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~ 156 (214)
++...........+.+..+...|++.|+|-|++.|++|+|+|+|+|++..+-..++..+|+..++.-+.
T Consensus 174 ~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~ 242 (303)
T COG1575 174 LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL 242 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888999999999999999999999999999999999999999999998877754333
No 42
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.33 E-value=4.6e-11 Score=107.22 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-----cCCCCccccccchhhHHHHHHHHhhhhhhHH--HH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FF 74 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~Y-----S~~lPPlRlKr~pll~~l~I~~v~~~iv~~g--~f 74 (214)
++++.......++++.++... ...+...+..+.| +. ++||.++.+|+.++.+.+..+..| ++
T Consensus 91 ~~A~~~si~L~~~~l~L~~l~------~i~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~ 159 (299)
T PRK13592 91 KDLAIALSFIVAVSVLLNVLF------MNNVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLY 159 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhh
Confidence 345555555655565555442 1122455567888 87 899999999999999888544333 22
Q ss_pred HH-HHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 75 IH-FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.. .+....|.|.. ....+.+.....+.+.++|+.||+|| ||||+. .+|+|+++|+|++.+++..+..+.
T Consensus 160 ~~~fg~~~~g~~~~-~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~ 229 (299)
T PRK13592 160 TISFVCYKYNLPLL-SLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLD 229 (299)
T ss_pred hhhhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHH
Confidence 11 11112233321 11112334455677899999999999 899965 999999999999999988776555
No 43
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.24 E-value=2.1e-09 Score=95.02 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH-HHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLL-GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 79 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~-~g~~~l~~~~~~~~~l-g~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~ 79 (214)
+++......+.++|+.+... .+ +.......++.++ .++||. .+||++.. +..+....+...+++-+.. +
T Consensus 82 ~~a~~~~~~~~~~g~~il~~~~~-~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~- 152 (280)
T TIGR01473 82 REALAFGLLLGVLGVAILAAFVN-PLAALLGLFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA-V- 152 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH-h-
Confidence 56777888888888874443 44 4433333345544 889995 58999866 5555555553333333211 1
Q ss_pred HHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100 80 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 159 (214)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~ 159 (214)
+.. .+.+.++......++...-...-..+|.|.||+.|+||+|+++|+|++.+++.......-....+.+.....
T Consensus 153 ---~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 227 (280)
T TIGR01473 153 ---TGS--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGT 227 (280)
T ss_pred ---cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 223333333333333333322335689999999999999999999998876654443332333322322111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCC-Cc-hhHHHHHHHHHH
Q 028100 160 QLVKLVSIIGHSTLAFLLWLRAQTVDLS-NN-ASTYSFYMFIWK 201 (214)
Q Consensus 160 ~~~~~~~~~~h~~l~~~l~~~~~~vd~~-~~-~~~~~fy~~iwk 201 (214)
+......+=..-+..++++.+.+|.+ |+ ++-+.|+.-.|-
T Consensus 228 --~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~ 269 (280)
T TIGR01473 228 --GWLYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIY 269 (280)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 11111111122333445556666554 33 234445444444
No 44
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.20 E-value=2.8e-09 Score=95.29 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhh-hhHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSL-QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV-YQFSFFIHFQK 79 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~-g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~i-v~~g~f~~~~~ 79 (214)
+++........++|+.++... +.................||. ++||++ .+|..+..+.+.. +..|.+.
T Consensus 91 ~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~-~~~~~v~~~~g~~~~l~g~~a---- 160 (296)
T PRK04375 91 REALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRT-PQNIVIGGAAGAMPPLIGWAA---- 160 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCC-ccchHHHHHHHHhHHHHHHHH----
Confidence 567788888888888887553 322233222222335678984 799999 6777776665522 2223221
Q ss_pred HHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHH
Q 028100 80 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 145 (214)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~ 145 (214)
+ .. .++...++......++.........+.|.|.||+.|+||+|+++|+|++.+++.....+
T Consensus 161 -~-~g--~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~ 222 (296)
T PRK04375 161 -V-TG--SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVL 222 (296)
T ss_pred -h-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHH
Confidence 1 22 23333444444555566555555556777778999999999999999988766444333
No 45
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.20 E-value=2.1e-09 Score=96.64 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQS---PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 78 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~---~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~ 78 (214)
+++.....++.++++.+....+. +.......++++....|+ -+||+-.+..+......+.-...|+ ..
T Consensus 91 ~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a~~~l~gw-~A-- 161 (294)
T PRK12873 91 KTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP------SAKRWFAYPQAILALCWGFAVLIPW-AA-- 161 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH------HHHhccccchHHHHHHHHhHHHHHH-HH--
Confidence 57888888888888888766531 222222335566788999 3888877666643333332222222 11
Q ss_pred HHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028100 79 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 158 (214)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~ 158 (214)
+ .....+....+++.....+++.+-.++++++|.|+||+.|++|+|++.|++. ......+-.+........|....
T Consensus 162 --v-~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~-~~~~~~~~~~~~~ll~~~g~~~~ 237 (294)
T PRK12873 162 --A-EGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNA-LKTVQICYFLTSIFLALAAFIAQ 237 (294)
T ss_pred --H-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhh-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 2222222233333345567888889999999999999999999999999754 44444333333333444555432
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhccCCC---chhHHHHHHHHHH
Q 028100 159 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSN---NASTYSFYMFIWK 201 (214)
Q Consensus 159 ~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~---~~~~~~fy~~iwk 201 (214)
..+ ... .+=.+.+..+.+|.+.+|.++ ++..+.|.+..|-
T Consensus 238 l~~--~y~-~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~ 280 (294)
T PRK12873 238 VGF--IFW-PFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVIL 280 (294)
T ss_pred CcH--HHH-HHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHH
Confidence 211 111 122344556678899999887 4566888887764
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.03 E-value=6.2e-08 Score=87.39 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLI-FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 80 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~-~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~ 80 (214)
+++..+.....++|+.+....-++... ...+.......+|+. ++||++..++.......+.....|...
T Consensus 94 ~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a----- 163 (306)
T PRK13362 94 GEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA----- 163 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----
Confidence 467778888888888765442223322 222223345679995 799999988886555544333333322
Q ss_pred HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHH
Q 028100 81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 139 (214)
Q Consensus 81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~ 139 (214)
+ ++. .+...+++...+.++...-...+++.|.|.|++.|++|+|++.|+|++.+..
T Consensus 164 ~-~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 164 V-TGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred H-cCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 1 222 2334445555667777777788899999999999999999999999888744
No 47
>PLN02776 prenyltransferase
Probab=97.74 E-value=0.01 Score=54.75 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHH-HHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLL-GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 79 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la-~~~g~~~l~~~~~~~~~l-g~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~ 79 (214)
+++....+++.++|+.+. ...+......+ .++.++ ...|+ .+||+..+ |..+-.+.|.+-+++-|..
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~-~~~~~ly~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A--- 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLG-AGNILLYAFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA--- 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH---
Confidence 467777788888888554 34442222222 233444 45788 49999966 4444444443333333322
Q ss_pred HHhcCCCcCcHHHHHHHHHHHHHHH--HHHHHhcCCChhhhHhcCCccchhhh--chHHHHHHHHHH
Q 028100 80 YVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYA 142 (214)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~f~~~fa~--~i~i~KDipDieGDr~~GirTl~v~l--G~k~~~~l~~~l 142 (214)
+ +.. ++...+++...+.++.. .-.+. ..|.|-|++.|++.+|+.- |++.+..+....
T Consensus 145 -v-tg~--~~~~~~~Lf~~~~~Wq~pHf~~la--~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~ 205 (341)
T PLN02776 145 -A-SGQ--LDAGAMVLAAALYFWQMPHFMALA--YMCRDDYAAGGYRMLSLADATGRRTALVALRNC 205 (341)
T ss_pred -H-cCC--CCHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhCCCcccCccccchHHHHHHHHHHH
Confidence 1 222 22333333333344433 22221 2234468899999999865 456555555333
No 48
>PRK08238 hypothetical protein; Validated
Probab=97.09 E-value=0.012 Score=56.41 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 81 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~ 81 (214)
++|..+...+.++|+.+++..+ +......+..+++..+||. ++||++++++++++...+.-+..|.. .
T Consensus 273 ~~A~~~~~~l~~~~~~l~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~------a 340 (479)
T PRK08238 273 PFGLAAAPLLLLAGLALALALG-PAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAA------A 340 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHH------H
Confidence 5678888899999999998865 4555555577888899995 89999999999877665533333321 2
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 028100 82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 123 (214)
Q Consensus 82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~Gi 123 (214)
.+ .+.+-|+.. +..++....++.|.-.|+++|++.|-
T Consensus 341 ~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 341 IG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred hc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 12 223444432 33456778899999999999999886
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=97.04 E-value=0.0054 Score=55.35 Aligned_cols=59 Identities=32% Similarity=0.559 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhh
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 66 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~ 66 (214)
++|......+..+|+.+++..+ +.........+++.++||. ++||+|++++++++...+
T Consensus 93 ~~A~~~~~~l~~~~l~la~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 93 SLAYILAVVLLVASLALAYLLS-PKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFV 151 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHH
Confidence 5677888888888988888765 4444444577888899995 899999999998876654
No 50
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=93.95 E-value=0.079 Score=46.94 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100 105 VMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 159 (214)
Q Consensus 105 ~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~ 159 (214)
+|.=.|+-+|.|.||+.||-|+++..|+.....+...++...|....+.|.-.+.
T Consensus 244 ailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si 298 (359)
T KOG4581|consen 244 AILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI 298 (359)
T ss_pred HHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999999999999999888876543
No 51
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=5.8 Score=36.23 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhH-HHHHHHHH
Q 028100 2 GTGLAITLTLSLTSLAIALSLQSPPLIF-GLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF-SFFIHFQK 79 (214)
Q Consensus 2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~-~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~-g~f~~~~~ 79 (214)
+++.......+++|+.+.+....+...+ .+...++=...||. -+||+-.. |..|-...|...++ |+...
T Consensus 99 ~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~-NiviGg~aGa~PpliGwaAv--- 169 (304)
T COG0109 99 REALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQ-NIVIGGFAGAMPPLIGWAAV--- 169 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCccc-ceeeeeccccccccceeeee---
Confidence 5677778888888888874433333333 33344455678996 79998743 33333333333332 22111
Q ss_pred HHhcCCCcCcHHHHHHHHHH----HHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHH
Q 028100 80 YVLGRPVVITRPLIFAAAII----STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 139 (214)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~f~----~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~ 139 (214)
.+.......+.+...|. =+++.++..-+| =|+.|+--+|+.-|++++.+-.
T Consensus 170 ---tg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 170 ---TGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred ---eCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHH
Confidence 11122222222222111 123333333332 3689999999999999887644
No 52
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=88.75 E-value=3.8 Score=37.31 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 028100 5 LAITLTLSLTSLAIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLG 83 (214)
Q Consensus 5 ~~iv~~~~~lg~~la~~~g~~~l~~~~~-~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~ 83 (214)
+.|+...+-+...++...+-.+--+.+. -++.+-..|.. .||.-.+--.. -|.-.|+|... +..+.+
T Consensus 151 qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl------~kr~TY~pq~v----LgltfnwGAll--Gw~A~~ 218 (353)
T KOG1381|consen 151 QAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPL------MKRFTYWPQLV----LGLTFNWGALL--GWCALK 218 (353)
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeeh------hhhcchhHHHH----Hhhhcchhhhh--cchhhc
Confidence 3455555556666666655444444333 45555556663 77776555442 12233343321 111112
Q ss_pred CCCcCcHHHHHHHHHH-HHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHH-HHHHHHHHHHHHHHHhhhHhH
Q 028100 84 RPVVITRPLIFAAAII-STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV-YALFFAYGVSVIVGASSSFQL 161 (214)
Q Consensus 84 ~~~~~~~~l~~~~~f~-~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~-~ll~~~y~~~i~~g~~~~~~~ 161 (214)
... .++..+..-.- -.++..--.+-.=.|-+-|-+.|+++.+.|+|++.=.|++. ....++.+. ..|..+-..|
T Consensus 219 g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La--~aG~~s~q~~ 294 (353)
T KOG1381|consen 219 GSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLA--AAGIASDQTW 294 (353)
T ss_pred Ccc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHH--HhhhccCCCc
Confidence 221 12222211111 12333334556678999999999999999999998777763 222333222 3365554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHHHHHHH
Q 028100 162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWK 201 (214)
Q Consensus 162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy~~iwk 201 (214)
.-... -...+.=|-++-.+||+.|++.. +.|=..+|-
T Consensus 295 -pyy~~--lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~nt 332 (353)
T KOG1381|consen 295 -PYYAA--LGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNT 332 (353)
T ss_pred -hHHHH--HHHHHHHHHhheeeeecCChHHHHHHHHhcCcc
Confidence 11111 23344556788999999987755 344444443
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=76.84 E-value=10 Score=33.18 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhc---hHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCV 140 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~~ 140 (214)
+...+-.++||+-|.|=|++. .+.=|..-| ++.+...+.
T Consensus 48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~ 89 (279)
T PRK12884 48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAI 89 (279)
T ss_pred HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHH
Confidence 344455699999999999988 456666666 444544443
No 54
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=75.51 E-value=24 Score=31.68 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCCccchhhh---chHHHHHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDGDKQFGFQSISSKL---GKENVLRLCVYAL 143 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~GirTl~v~l---G~k~~~~l~~~ll 143 (214)
.+...+-.++||.-|.|-|++.+ ++=|+.- .+|.+...+..+.
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~ 109 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLF 109 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHH
Confidence 44555668999999999998776 3444444 4555555544333
No 55
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=74.88 E-value=24 Score=31.18 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCC---ccchhhhchH
Q 028100 100 STISAVMSLLKDIPDEDGDKQFGF---QSISSKLGKE 133 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~Gi---rTl~v~lG~k 133 (214)
.....+...+||+-|.|=||+.-- |.+|.-.-.+
T Consensus 57 ~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~ 93 (289)
T COG0382 57 FLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSV 93 (289)
T ss_pred HHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCH
Confidence 445556679999999999999865 4444433333
No 56
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=74.77 E-value=21 Score=32.29 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCChhhhHhc---CCccchh-hhchHHHHHHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDGDKQF---GFQSISS-KLGKENVLRLCVYALF 144 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~---GirTl~v-~lG~k~~~~l~~~ll~ 144 (214)
++.+.+..++||+-|.|=||++ .-|.+|- ++.++.+..++..++.
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 3445566799999999999996 2233332 3444555554444333
No 57
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=69.39 E-value=47 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCChhhhHhc-CCccchhhhchHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGKEN 134 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~-GirTl~v~lG~k~ 134 (214)
.........||.-|.|=||.. +.+.-|..-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 456666789999999999995 3334444344433
No 58
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=65.42 E-value=1.1e+02 Score=27.74 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCC---ccchh-hhchHHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDGDKQFGF---QSISS-KLGKENVLRLCV 140 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~Gi---rTl~v-~lG~k~~~~l~~ 140 (214)
.+.+.+-..+||+-|.|=||+... |.+|- ++.++.+..++.
T Consensus 57 ~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 57 SLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred HHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 344556679999999999987643 43332 334455554443
No 59
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=65.20 E-value=86 Score=27.34 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCC
Q 028100 99 ISTISAVMSLLKDIPDEDGDKQFGF 123 (214)
Q Consensus 99 ~~~fa~~i~i~KDipDieGDr~~Gi 123 (214)
..+...+...+||.-|.|-|+..+-
T Consensus 45 ~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 45 TFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHhhhhcCCchhhcCCC
Confidence 3455667789999999999987543
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=62.66 E-value=81 Score=27.58 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhc---hHHHHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL 143 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~~~ll 143 (214)
...+-.++||.-|.|-||+.. +.=|..-| +|.+..++..+.
T Consensus 50 ~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~ 93 (276)
T PRK12882 50 ATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLF 93 (276)
T ss_pred HHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHH
Confidence 344446899999999999754 55566555 455554444333
No 61
>PRK13595 ubiA prenyltransferase; Provisional
Probab=61.35 E-value=1.3e+02 Score=27.34 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCCccchh---hhchHHHHHHH
Q 028100 98 IISTISAVMSLLKDIPDEDGDKQFGFQSISS---KLGKENVLRLC 139 (214)
Q Consensus 98 f~~~fa~~i~i~KDipDieGDr~~GirTl~v---~lG~k~~~~l~ 139 (214)
+..-....+.-+||.-|.|-|+++.- |=++ ++.++.+..++
T Consensus 55 ~~~p~n~~~~giND~fD~eiDa~Npr-~~~i~~G~is~~~~~~~~ 98 (292)
T PRK13595 55 LTLPFNLLIYGLNDLADRETDAASPR-KGGWQGARLSPGEVRPLL 98 (292)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCC-CCCCCcCccCHHHHHHHH
Confidence 43445566789999999999986543 2333 34444444443
No 62
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=58.69 E-value=46 Score=29.24 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhc---hHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCV 140 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~~ 140 (214)
...+-..+||.-|.|-|++.+ ++=|+.-| +|.+.+++.
T Consensus 50 ~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~ 90 (283)
T TIGR01476 50 GTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWL 90 (283)
T ss_pred HHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHH
Confidence 445556999999999999765 33343333 444544443
No 63
>PLN00012 chlorophyll synthetase; Provisional
Probab=56.89 E-value=76 Score=29.70 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhc
Q 028100 101 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG 131 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~GirTl~v~lG 131 (214)
+...+-.++||.-|.|-|++.+ ++=|+.-|
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG 163 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINE-PYRPIPSG 163 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCC-CCCCcCCC
Confidence 3344457999999999998876 44455445
No 64
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=56.49 E-value=73 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhh---hchHHHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFGFQSISSK---LGKENVLRLCVYA 142 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~GirTl~v~---lG~k~~~~l~~~l 142 (214)
+...+-.++||+-|.|-||+.. +.=|+. +-+|.+..++..+
T Consensus 48 l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l 91 (279)
T PRK09573 48 LVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL 91 (279)
T ss_pred HHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence 3445556999999999999764 444443 3455555555433
No 65
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=56.47 E-value=33 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCChhhhHhc---CCccchh-hhchHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDGDKQF---GFQSISS-KLGKENVLRLC 139 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~---GirTl~v-~lG~k~~~~l~ 139 (214)
.+...+-..+||+-|.|-||+. .-|.+|- ++.+|.+..++
T Consensus 46 ~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (282)
T TIGR01475 46 VSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMI 89 (282)
T ss_pred HHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3445556799999999999986 2344443 34555555554
No 66
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=56.23 E-value=84 Score=27.75 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCChhhhHhcC---Cccchh-hhchHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFG---FQSISS-KLGKENVLRLCV 140 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~G---irTl~v-~lG~k~~~~l~~ 140 (214)
+...+-..+||+-|.|-||+.. -|.+|. +..+|.+..++.
T Consensus 47 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (279)
T PRK12869 47 LASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS 90 (279)
T ss_pred HHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence 3345557999999999999865 244443 335555554443
No 67
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=54.21 E-value=96 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.4
Q ss_pred HhcCCChhhhHhcCCccchhhhch
Q 028100 109 LKDIPDEDGDKQFGFQSISSKLGK 132 (214)
Q Consensus 109 ~KDipDieGDr~~GirTl~v~lG~ 132 (214)
+||.-|.|=||.. .++-|+.=|+
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcc
Confidence 9999999999964 4666654443
No 68
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=52.52 E-value=1.1e+02 Score=27.30 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.6
Q ss_pred HHHhcCCChhhhHhcCCcc
Q 028100 107 SLLKDIPDEDGDKQFGFQS 125 (214)
Q Consensus 107 ~i~KDipDieGDr~~GirT 125 (214)
-.+||+-|.|-||+...|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 3479999999999887665
No 69
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=52.29 E-value=13 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=26.7
Q ss_pred HHHhcCCChhhhH----------hcCCccchhhhchHHHHHH
Q 028100 107 SLLKDIPDEDGDK----------QFGFQSISSKLGKENVLRL 138 (214)
Q Consensus 107 ~i~KDipDieGDr----------~~GirTl~v~lG~k~~~~l 138 (214)
-+.+|+.|+.+|. +.|..|+|....++.....
T Consensus 163 Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 163 QLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 4999999999998 8999999999985544443
No 70
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=51.18 E-value=82 Score=28.23 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHhcCCChhhhHhcCC-ccchhhhch
Q 028100 106 MSLLKDIPDEDGDKQFGF-QSISSKLGK 132 (214)
Q Consensus 106 i~i~KDipDieGDr~~Gi-rTl~v~lG~ 132 (214)
=..+||+-|.|=||+... +.=|.--|+
T Consensus 61 ~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 61 GCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 359999999999998643 345655564
No 71
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=51.16 E-value=87 Score=28.25 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCChhhhHhcC
Q 028100 102 ISAVMSLLKDIPDEDGDKQFG 122 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~G 122 (214)
...+-..+||+-|.|=|++..
T Consensus 61 ~~~a~~~~Nd~~D~diD~~~~ 81 (300)
T PRK13106 61 LRTAGMTNDNLADLEIDAKNP 81 (300)
T ss_pred HHHHHHHHHhhHHhccccCCC
Confidence 334445899999999999863
No 72
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=50.50 E-value=46 Score=30.03 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhh---hchHHHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGFQSISSK---LGKENVLRLCVYA 142 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~GirTl~v~---lG~k~~~~l~~~l 142 (214)
...+-.++||.-|.|-||+.+ ++=|+. +.++.+..++..+
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l 119 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVL 119 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHH
Confidence 445556999999999999754 344443 3445555554433
No 73
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=49.21 E-value=68 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=23.6
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhc---hHHHHHHH
Q 028100 104 AVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLC 139 (214)
Q Consensus 104 ~~i~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~ 139 (214)
.+-.++||.-|.|=||... ++=|+.-| ++.+...+
T Consensus 51 ~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~ 88 (277)
T PRK12883 51 SGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYS 88 (277)
T ss_pred HHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHH
Confidence 4557999999999999754 55555544 44554444
No 74
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=46.48 E-value=2.1e+02 Score=25.41 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCChhhhHhcC
Q 028100 103 SAVMSLLKDIPDEDGDKQFG 122 (214)
Q Consensus 103 a~~i~i~KDipDieGDr~~G 122 (214)
..+-..+||+-|.|-|++..
T Consensus 52 ~~a~~~~Nd~~Dr~iD~~~~ 71 (284)
T PRK12888 52 RTFAMAANRIIDREIDARNP 71 (284)
T ss_pred HHHHHHHHhHHhhCCCCCCC
Confidence 33345999999999999874
No 75
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=44.15 E-value=1.4e+02 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCChhhhHhcC---Cccchh-hhchHHHHHHHH
Q 028100 103 SAVMSLLKDIPDEDGDKQFG---FQSISS-KLGKENVLRLCV 140 (214)
Q Consensus 103 a~~i~i~KDipDieGDr~~G---irTl~v-~lG~k~~~~l~~ 140 (214)
..+-.++||+-|.|=||+.. -|.+|- ++.+|.+..++.
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 98 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGL 98 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 33335999999999999853 233332 345555655543
No 76
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=43.43 E-value=46 Score=24.32 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC
Q 028100 4 GLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 43 (214)
Q Consensus 4 ~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~ 43 (214)
|..++......|.+-+.- .+|+++..=..|+..|+.|+.
T Consensus 27 g~~lt~~Li~ASvykGyt-~~~~ii~iD~~Sl~aGf~~a~ 65 (74)
T PF09964_consen 27 GTILTVALIAASVYKGYT-HTWWIIFIDAVSLTAGFLYAK 65 (74)
T ss_pred HHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443 556666655678888888875
No 77
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=42.31 E-value=2.1e+02 Score=25.02 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCChhhhHhcC---Cccchh-hhchHHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFG---FQSISS-KLGKENVLRLCVY 141 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~G---irTl~v-~lG~k~~~~l~~~ 141 (214)
+...+-..+||.-|.|=|++.. -|.+|- ++-+|.+..++..
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~ 90 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLL 90 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3344446999999999999743 343333 3445556555443
No 78
>PRK10133 L-fucose transporter; Provisional
Probab=42.26 E-value=2e+02 Score=26.60 Aligned_cols=77 Identities=6% Similarity=-0.029 Sum_probs=42.1
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh---HhHHHHHHHHHHHHHHHHHHHHHhhccCCCch-hHHHHHHHHHH
Q 028100 126 ISSKLGKENVLRLCVYALFFAYGVSVIVGASSS---FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNA-STYSFYMFIWK 201 (214)
Q Consensus 126 l~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~---~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~-~~~~fy~~iwk 201 (214)
+.-|+|+|++..++..+..++.+.....+...+ ......+.+.|+...-...--...+...+++. ...++++..|.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 445779999999988777776544322222211 13445666777775544432222223222222 34677777765
Q ss_pred H
Q 028100 202 L 202 (214)
Q Consensus 202 l 202 (214)
+
T Consensus 164 ~ 164 (438)
T PRK10133 164 F 164 (438)
T ss_pred H
Confidence 3
No 79
>PRK13591 ubiA prenyltransferase; Provisional
Probab=41.51 E-value=2.8e+02 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.065 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCChhhhHhc
Q 028100 100 STISAVMSLLKDIPDEDGDKQF 121 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~ 121 (214)
.+........||.-|.|-||..
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHHHHhhhccchhhhcc
Confidence 3456677899999999999885
No 80
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=40.63 E-value=83 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCChhhhHhcCC-ccchhhhc---hHHHHHHHH
Q 028100 103 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCV 140 (214)
Q Consensus 103 a~~i~i~KDipDieGDr~~Gi-rTl~v~lG---~k~~~~l~~ 140 (214)
..+-..+||+-|.|=||+... +.=|+--| ++.+..++.
T Consensus 53 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 94 (281)
T TIGR01474 53 RGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLL 94 (281)
T ss_pred HHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHH
Confidence 344459999999999996542 12343334 444544443
No 81
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=40.01 E-value=2.1e+02 Score=24.65 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=13.3
Q ss_pred hhchHHHHHHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYG 148 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~ 148 (214)
|.|+|+...++..+..++..
T Consensus 63 r~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HhCchHHHHHHHHHHHHHHH
Confidence 56888887777666655543
No 82
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=37.85 E-value=2.8e+02 Score=24.34 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCChhhhHhcCC---ccchh-hhchHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGF---QSISS-KLGKENVLRLCV 140 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~Gi---rTl~v-~lG~k~~~~l~~ 140 (214)
...+-.++||.-|.|=|++... |.+|. ++-+|.+..++.
T Consensus 57 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 99 (285)
T PRK12847 57 MRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLF 99 (285)
T ss_pred HHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHH
Confidence 3444469999999999986432 33333 344455555443
No 83
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=37.66 E-value=1.8e+02 Score=26.26 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCChhhhHhcCC-ccchhhh---chHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFGF-QSISSKL---GKENVLRLC 139 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~Gi-rTl~v~l---G~k~~~~l~ 139 (214)
+.+.+-..+||+-|.|=||+... |.=|+-- .++.+..++
T Consensus 55 l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~ 97 (294)
T PRK12873 55 AVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLL 97 (294)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHH
Confidence 34444469999999999998775 3444443 444454444
No 84
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=37.10 E-value=1.7e+02 Score=26.33 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=13.7
Q ss_pred HHHhcCCChhhhHhc
Q 028100 107 SLLKDIPDEDGDKQF 121 (214)
Q Consensus 107 ~i~KDipDieGDr~~ 121 (214)
..+||+=|.|=||+.
T Consensus 54 ~~~Ndi~Dr~iD~~~ 68 (286)
T PRK12895 54 MSINRIEGLRYDMIN 68 (286)
T ss_pred HHHHhHHHhcccCCC
Confidence 499999999999887
No 85
>PRK08238 hypothetical protein; Validated
Probab=36.53 E-value=2e+02 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCChhhhHhcC-Cccchhh---hchHHHHHHHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDGDKQFG-FQSISSK---LGKENVLRLCVYALFF 145 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieGDr~~G-irTl~v~---lG~k~~~~l~~~ll~~ 145 (214)
++.+.+..++||+-|.|=||+.- .|.=|+- +..+.+..++..++.+
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~ 285 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLA 285 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34556667999999999999983 2333433 3444555444444333
No 86
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.23 E-value=1.4e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHH
Q 028100 5 LAITLTLSLTSLAIALSLQSPPLI 28 (214)
Q Consensus 5 ~~iv~~~~~lg~~la~~~g~~~l~ 28 (214)
..+..+++++|+..++..++.-..
T Consensus 14 ~~il~~~~iisfi~Gy~~q~~~~~ 37 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQSFSYT 37 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776654433
No 87
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=32.49 E-value=3.7e+02 Score=24.63 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHhcCCChhhhHhcCCccchhhhc---hHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYALFF 145 (214)
Q Consensus 107 ~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~~~ll~~ 145 (214)
.++||.-|.|=|++.+ ||=|+.-| +|.+..++..+..+
T Consensus 67 ~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~l 107 (331)
T PRK12392 67 QSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLL 107 (331)
T ss_pred hHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHH
Confidence 5899999999998754 55555444 55565555444433
No 88
>PRK10581 geranyltranstransferase; Provisional
Probab=32.18 E-value=38 Score=30.49 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHH--HHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHH
Q 028100 102 ISAVMS--LLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALF 144 (214)
Q Consensus 102 fa~~i~--i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~ 144 (214)
..+|++ |..|+-|+.|| -+.|..|+|+.+|.+++...+--...
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444 89999999776 45689999999998877765544433
No 89
>PRK13592 ubiA prenyltransferase; Provisional
Probab=31.63 E-value=4.1e+02 Score=24.32 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhc---hHHHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYA 142 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGDr~~GirTl~v~lG---~k~~~~l~~~l 142 (214)
+++.+-.++||..|.|=||.+.= .=|+--| +|.+...+..+
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN~P-~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRLFP-HRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhcCC-CCCCCcCCCCHHHHHHHHHHH
Confidence 44566679999999999998753 2333333 34444444444
No 90
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=29.19 E-value=3.7e+02 Score=23.09 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=11.6
Q ss_pred hccCCCchhHHHHHHHHHH
Q 028100 183 TVDLSNNASTYSFYMFIWK 201 (214)
Q Consensus 183 ~vd~~~~~~~~~fy~~iwk 201 (214)
+...+++.+..+.|+...+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~ 333 (375)
T TIGR00899 315 DLMPGRAGAATTLYTNTGR 333 (375)
T ss_pred HhCcchhhHHHHHHHHHHH
Confidence 3333455567777777665
No 91
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=29.17 E-value=3.5e+02 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=14.0
Q ss_pred hhchHHHHHHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYG 148 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~ 148 (214)
|.|+|++..++..+..+...
T Consensus 64 ~~G~r~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 64 KFGPRAVAMLGGILYGLGFT 83 (377)
T ss_pred HcCccchhHHhHHHHHHHHH
Confidence 57888888877766665543
No 92
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=28.81 E-value=2.1e+02 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=10.0
Q ss_pred hchHHHHHHHHHHHHHH
Q 028100 130 LGKENVLRLCVYALFFA 146 (214)
Q Consensus 130 lG~k~~~~l~~~ll~~~ 146 (214)
.|+|+....+..+..++
T Consensus 25 ~g~~~~~~~~~~~~~~~ 41 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLS 41 (141)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 46677766665554444
No 93
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=28.19 E-value=1.3e+02 Score=22.37 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchh
Q 028100 12 SLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPF 55 (214)
Q Consensus 12 ~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pl 55 (214)
.++++.++...+. ....+++++++.+.|+ |+|+..-
T Consensus 26 ~~~~~~~gi~~~~--~~~g~i~g~~~~~~~~------k~K~~~~ 61 (95)
T PF07178_consen 26 ALILFVIGILSGH--FLIGLILGIVLWWGYR------KFKKGRG 61 (95)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHHHHH------HHHccCC
Confidence 4455555555554 3344557888999999 8998763
No 94
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.05 E-value=2.3e+02 Score=20.35 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 028100 131 GKENVLRLCVYALFFAYGVSVIVGASSSFQ 160 (214)
Q Consensus 131 G~k~~~~l~~~ll~~~y~~~i~~g~~~~~~ 160 (214)
|+|++-++...++.+.-..+.+.|......
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888888888889875443
No 95
>COG2119 Predicted membrane protein [Function unknown]
Probab=27.85 E-value=3.9e+02 Score=22.92 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCC
Q 028100 34 WFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIP 113 (214)
Q Consensus 34 ~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDip 113 (214)
+.++...+.. |.||.|...+..++...- |.-....|.....+.+--.....-...-...++.-++|
T Consensus 20 T~lia~llA~-----r~~~~~v~~g~~~a~~~m---------~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~e 85 (190)
T COG2119 20 TQLIAMLLAM-----RYRRWPVFAGIAIALFAM---------HALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIE 85 (190)
T ss_pred HHHHHHHHHH-----hcCCchhHHHHHHHHHHH---------HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcc
Q ss_pred ChhhhHhcCCccchhhhchHHHHHHHHHHHHHH------HHHHHHHHHhhhH-hHHHHHHHHHHHH
Q 028100 114 DEDGDKQFGFQSISSKLGKENVLRLCVYALFFA------YGVSVIVGASSSF-QLVKLVSIIGHST 172 (214)
Q Consensus 114 DieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~------y~~~i~~g~~~~~-~~~~~~~~~~h~~ 172 (214)
|-|-|.+.+ .-..+.++.-......++ ++..+..+..+.. ...-+=+..||.+
T Consensus 86 dk~~~~e~~------~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l 145 (190)
T COG2119 86 DKEDDEEAQ------AASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMIL 145 (190)
T ss_pred ccccccccc------ccccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHH
No 96
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.74 E-value=2.8e+02 Score=21.28 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHcCCCCccc
Q 028100 3 TGLAITLTLSLTSLAIALSLQSPPLIF-GLIVWFLLGTAYSVDLPFLR 49 (214)
Q Consensus 3 ~~~~iv~~~~~lg~~la~~~g~~~l~~-~~~~~~~lg~~YS~~lPPlR 49 (214)
+-+.|..+.++.|++.+....+.-... ++..++++..+-. +||=.
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~--LPpwP 72 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLIT--LPPWP 72 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCch
Confidence 346678888999999988866443222 3334554444444 56633
No 97
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.95 E-value=5.4e+02 Score=22.84 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCChhhhHhcC
Q 028100 102 ISAVMSLLKDIPDEDGDKQFG 122 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~G 122 (214)
...+-..+||+-|.|=||+..
T Consensus 58 ~~~a~~~~Nd~~D~~iD~~~~ 78 (290)
T PRK12870 58 TSAAGCVVNDLWDRDIDPQVE 78 (290)
T ss_pred HHHHHHHHHhHHHhccCCCCC
Confidence 344445999999999997643
No 98
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=22.74 E-value=3.9e+02 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 028100 167 IIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 197 (214)
Q Consensus 167 ~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~ 197 (214)
.+-|+.++....+|.+ ++++-.+|||.
T Consensus 49 ~LPn~~Fa~~aF~~~~----~~~~~~~sFy~ 75 (126)
T PRK06099 49 FLPFCLFVYWIFFRKQ----KNSSKLTAFYR 75 (126)
T ss_pred HHhHHHHHHHHHHhcc----chHHHHHHHHH
Confidence 3456666666654443 67777999997
No 99
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=22.72 E-value=3.9e+02 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=14.6
Q ss_pred HHHhcCCChhhhHhcC
Q 028100 107 SLLKDIPDEDGDKQFG 122 (214)
Q Consensus 107 ~i~KDipDieGDr~~G 122 (214)
..+||+-|.|=||+.-
T Consensus 64 ~~~Nd~~DrdiD~~~~ 79 (300)
T PRK12876 64 IIVNQIIDCAIDKKNP 79 (300)
T ss_pred HHHHhHHHhcccCCCC
Confidence 5899999999999887
No 100
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=22.44 E-value=7e+02 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHH
Q 028100 127 SSKLGKENVLRLCVYALFFAYGVSV 151 (214)
Q Consensus 127 ~v~lG~k~~~~l~~~ll~~~y~~~i 151 (214)
.-++++++.+.++......++++..
T Consensus 68 ~~~~~~~~lf~~~~~~F~~~f~lF~ 92 (472)
T TIGR00769 68 SNILSKEALFYTVISPFLGFFALFA 92 (472)
T ss_pred HhcCCHHHhHHHHHHHHHHHHHHHH
Confidence 4478888999888877777766544
No 101
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=22.22 E-value=4.9e+02 Score=23.54 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=35.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH-HHHhhccCCCchhHHHHHHHHH
Q 028100 128 SKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLW-LRAQTVDLSNNASTYSFYMFIW 200 (214)
Q Consensus 128 v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~l~~~l~-~~~~~vd~~~~~~~~~fy~~iw 200 (214)
-|+|+|++..++..+..++........-.......+.+.+.++........ .=++..+.+++....+.|+..+
T Consensus 68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 141 (412)
T TIGR02332 68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAM 141 (412)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 468889988777666665544433211111123445666667764332221 1122333333444555555444
No 102
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=21.84 E-value=5.1e+02 Score=22.74 Aligned_cols=70 Identities=14% Similarity=0.026 Sum_probs=32.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhhhH---hHHHHHHHHHHHHHHH-HHHHHHhhccCCCchhHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGASSSF---QLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNASTYSFYMFIWK 201 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~---~~~~~~~~~~h~~l~~-~l~~~~~~vd~~~~~~~~~fy~~iwk 201 (214)
|.|+|+...++..+..+...... ..... ...+.+...+....-. ..-.-++..|.+++....+.++..+.
T Consensus 64 r~g~r~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 137 (392)
T PRK10473 64 RSGRKPVAIPGAALFIIASLLCS---LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC 137 (392)
T ss_pred HhCChHHHHHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 46888888777665555543322 21111 1222233333322211 11122344455556666666666554
No 103
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=21.67 E-value=5.9e+02 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=12.4
Q ss_pred HHHhcCCChhhhHh
Q 028100 107 SLLKDIPDEDGDKQ 120 (214)
Q Consensus 107 ~i~KDipDieGDr~ 120 (214)
.++||.-|.|=|++
T Consensus 58 ~~iND~~D~~~D~~ 71 (297)
T PRK12871 58 FVLNDYVDRKRDRL 71 (297)
T ss_pred HHHhhHHHHhcCcc
Confidence 49999999999975
No 104
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=21.52 E-value=4.5e+02 Score=23.47 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=28.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTL 173 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~l 173 (214)
|.|+|++...+..+..++.+.....-=.......+.+.+.|++..
T Consensus 70 r~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~ 114 (393)
T PRK09705 70 HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGII 114 (393)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHH
Confidence 689999999998888777654432211112245566667777643
No 105
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=21.01 E-value=4.8e+02 Score=23.21 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHhcCCChhhhHhcCCcc--chhhhc---hHHHHHH
Q 028100 106 MSLLKDIPDEDGDKQFGFQS--ISSKLG---KENVLRL 138 (214)
Q Consensus 106 i~i~KDipDieGDr~~GirT--l~v~lG---~k~~~~l 138 (214)
-..+||+-|.|=|++.. || =|+.-| ++.+...
T Consensus 58 ~~~~Nd~~D~~iD~~~~-RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 58 AMGFNRLIDAEIDARNP-RTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHhHHhhccCCCCC-CCCCCCCCCCCcCHHHHHHH
Confidence 35899999999999765 33 355555 4444433
No 106
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=20.30 E-value=5.7e+02 Score=22.10 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=10.3
Q ss_pred hhchHHHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFF 145 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~ 145 (214)
|.|+|+...++..+..+
T Consensus 256 r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 256 RVGALNMLRFGLWIQFI 272 (377)
T ss_pred HhCHHHHHHHHHHHHHH
Confidence 56777777666554333
No 107
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=20.07 E-value=5.3e+02 Score=21.69 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=13.9
Q ss_pred hhchHHHHHHHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGV 149 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~ 149 (214)
|.|+|++..++..+..++...
T Consensus 60 r~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 60 RYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred hhchhHHHHHHHHHHHHHHHH
Confidence 468888888776665555433
Done!