Query 028100
Match_columns 214
No_of_seqs 184 out of 463
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 37.9 26 0.00088 30.3 3.7 40 107-146 213-263 (297)
2 3kra_B Geranyl diphosphate syn 36.8 20 0.00068 30.6 2.8 48 102-149 72-119 (274)
3 3llw_A Geranyltranstransferase 36.1 18 0.00063 31.5 2.5 40 107-146 227-275 (311)
4 4f62_A Geranyltranstransferase 34.5 17 0.00059 31.8 2.1 44 103-146 213-269 (317)
5 2h8o_A Geranyltranstransferase 33.5 18 0.00062 31.9 2.0 40 107-146 259-309 (335)
6 2j1p_A Geranylgeranyl pyrophos 33.3 12 0.00041 32.2 0.8 33 107-142 230-262 (293)
7 2hdi_B Colicin-IA; outer membr 32.9 13 0.00046 27.0 0.9 19 102-120 69-92 (113)
8 3p8r_A Geranyltranstransferase 31.7 19 0.00064 31.2 1.8 40 107-146 226-276 (302)
9 3lsn_A Geranyltranstransferase 31.7 24 0.00083 30.6 2.5 40 107-146 220-270 (304)
10 3ts7_A Geranyltranstransferase 31.3 22 0.00076 31.2 2.2 40 107-146 226-276 (324)
11 3o7q_A L-fucose-proton symport 30.3 2.4E+02 0.0081 23.4 9.1 74 129-202 87-164 (438)
12 1rqj_A Geranyltranstransferase 29.6 25 0.00086 30.2 2.2 44 103-146 214-270 (299)
13 3lom_A Geranyltranstransferase 29.2 23 0.00079 30.9 2.0 40 107-146 227-277 (313)
14 1rtr_A Geranyltranstransferase 28.5 27 0.00094 30.1 2.3 44 103-146 209-265 (301)
15 4gnt_B Carbohydrate-responsive 25.9 32 0.0011 19.0 1.4 12 197-208 8-19 (26)
16 1pw4_A Glycerol-3-phosphate tr 25.4 2.5E+02 0.0085 23.3 7.9 73 129-201 88-165 (451)
17 3pde_A Farnesyl-diphosphate sy 24.5 35 0.0012 29.7 2.3 45 103-147 216-273 (309)
18 3p8l_A Geranyltranstransferase 24.4 32 0.0011 29.8 2.0 44 103-146 217-273 (302)
19 3npk_A Geranyltranstransferase 24.2 34 0.0012 29.5 2.1 45 103-147 206-261 (291)
20 2gfp_A EMRD, multidrug resista 23.1 2.4E+02 0.0081 23.0 7.2 73 129-201 61-134 (375)
21 3uca_A Geranyltranstransferase 22.8 32 0.0011 30.1 1.7 44 103-146 242-298 (324)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=37.87 E-value=26 Score=30.30 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.|| -+.|+.|+|+.+|.+++...+--...-+
T Consensus 213 QI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 213 QIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999886 4578999999999999887766555544
No 2
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=36.79 E-value=20 Score=30.60 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 149 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~ 149 (214)
+-..--+-.|+|+.+.|.+.|..|.=.++|.+.+...+-.++..++-.
T Consensus 72 iH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 72 VHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 334445889999666677799999999999998887777777776543
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=36.10 E-value=18 Score=31.46 Aligned_cols=40 Identities=23% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHhcCCChhhhH---------hcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGDK---------QFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGDr---------~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.||. +.|+.|+|+.+|.+++..-.--++.-+
T Consensus 227 QI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a 275 (311)
T 3llw_A 227 QVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEV 275 (311)
T ss_dssp HHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999876 579999999999999876665555444
No 4
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=34.48 E-value=17 Score=31.80 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhhhH-----------hcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDGDK-----------QFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 103 a~~i~--i~KDipDieGDr-----------~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.+|++ |..|+-|+.||. +.|+.|+|+.+|.+++...+--...-+
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
No 5
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=33.50 E-value=18 Score=31.87 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=26.2
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.|| -+.|+.|+|+.+|.+++...+--...-+
T Consensus 259 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 489999998876 4578999999999887776655444433
No 6
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=33.31 E-value=12 Score=32.22 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.9
Q ss_pred HHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 142 (214)
Q Consensus 107 ~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~l 142 (214)
-|..|+-|+.||. +.|+|+.+|.+++...+--.
T Consensus 230 QI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 230 QVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 4999999999999 88999999988877665444
No 7
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=32.90 E-value=13 Score=27.03 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=13.5
Q ss_pred HHHHHHHHhc-----CCChhhhHh
Q 028100 102 ISAVMSLLKD-----IPDEDGDKQ 120 (214)
Q Consensus 102 fa~~i~i~KD-----ipDieGDr~ 120 (214)
...-..|++| -+|+|||++
T Consensus 69 ldy~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 69 LDYKRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHHHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhhhhcCCCCeeecccccchh
Confidence 3444567777 489999986
No 8
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=31.74 E-value=19 Score=31.21 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.|| -+.|+.|+|+.+|.+++...+--...-+
T Consensus 226 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 226 QVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 488999888775 4678999999999988876665544433
No 9
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=31.69 E-value=24 Score=30.56 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHhcCCChhhhH-----------hcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGDK-----------QFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGDr-----------~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.||. +.|+.|+|+.+|.+++...+--...-+
T Consensus 220 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 220 QVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999998864 678999999999999987776655554
No 10
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=31.26 E-value=22 Score=31.20 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.|| -+.|+.|+|+.+|.+++...+--...-+
T Consensus 226 QI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 276 (324)
T 3ts7_A 226 QIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAA 276 (324)
T ss_dssp HHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 489999998875 4679999999999999987776665554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=30.25 E-value=2.4e+02 Score=23.44 Aligned_cols=74 Identities=7% Similarity=-0.074 Sum_probs=41.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhhhH---hHHHHHHHHHHHHHHHH-HHHHHhhccCCCchhHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGASSSF---QLVKLVSIIGHSTLAFL-LWLRAQTVDLSNNASTYSFYMFIWKL 202 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~---~~~~~~~~~~h~~l~~~-l~~~~~~vd~~~~~~~~~fy~~iwkl 202 (214)
|+|+|++..++..+..+........+...+. .....+.+.+....-.. .-.-++..+.+++....+.++..+.+
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 5799999999888887776655433333221 23344445554433222 22334445555555556677666553
No 12
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=29.62 E-value=25 Score=30.22 Aligned_cols=44 Identities=27% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhhhH-----------hcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDGDK-----------QFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 103 a~~i~--i~KDipDieGDr-----------~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.+|++ |..|+-|+.||. +.|+.|+|+.+|.+++...+--...-+
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 270 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA 270 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
No 13
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=29.21 E-value=23 Score=30.86 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=29.3
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 107 SLLKDIPDEDGD-----------KQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 107 ~i~KDipDieGD-----------r~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
-|..|+-|+.|| -+.|+.|+|+.+|.+++...+--...-+
T Consensus 227 QI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 227 QMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999885 4679999999999999887776555544
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=28.51 E-value=27 Score=30.07 Aligned_cols=44 Identities=25% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhhhHhc-----------CCccchhhhchHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDGDKQF-----------GFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 103 a~~i~--i~KDipDieGDr~~-----------GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.+|++ |..|+-|+.||.+. |+.|+|+.+|.+++...+--...-+
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
No 15
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=25.95 E-value=32 Score=19.03 Aligned_cols=12 Identities=33% Similarity=1.030 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 028100 197 MFIWKLFYAEYL 208 (214)
Q Consensus 197 ~~iwklf~~ey~ 208 (214)
.-||+-.|.+|+
T Consensus 8 naiwrawyiqyv 19 (26)
T 4gnt_B 8 NAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH
Confidence 458999999996
No 16
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.43 E-value=2.5e+02 Score=23.34 Aligned_cols=73 Identities=5% Similarity=-0.209 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHH-hh---hHhHHHHHHHHHHHHHHHH-HHHHHhhccCCCchhHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGA-SS---SFQLVKLVSIIGHSTLAFL-LWLRAQTVDLSNNASTYSFYMFIWK 201 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~-~~---~~~~~~~~~~~~h~~l~~~-l~~~~~~vd~~~~~~~~~fy~~iwk 201 (214)
|+|+|++..++..+..++.+....... .. .......+.+.+....... .-.-++..+.+++....+.++..+.
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 165 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 165 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH
Confidence 579999988887777666544432100 21 1233345555554432222 1122334444445555566655554
No 17
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=24.51 E-value=35 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhh-----------hHhcCCccchhhhchHHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYALFFAY 147 (214)
Q Consensus 103 a~~i~--i~KDipDieG-----------Dr~~GirTl~v~lG~k~~~~l~~~ll~~~y 147 (214)
.+|++ |..|+-|+.| |-+.|+.|+|+.+|.+++..-.--++.-|+
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~ 273 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQ 273 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHH
No 18
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=24.37 E-value=32 Score=29.78 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhh-----------hHhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 103 a~~i~--i~KDipDieG-----------Dr~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.+|++ |..|+-|+.| |-+.|+.|+|+.+|.+++...+--...-+
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A 273 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEG 273 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
No 19
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=24.24 E-value=34 Score=29.47 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhhhHh---------cCCccchhhhchHHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDGDKQ---------FGFQSISSKLGKENVLRLCVYALFFAY 147 (214)
Q Consensus 103 a~~i~--i~KDipDieGDr~---------~GirTl~v~lG~k~~~~l~~~ll~~~y 147 (214)
.+|++ |..|+-|+.||.+ .|..|+|+.+|.+++..-.--++.-+.
T Consensus 206 ~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~ 261 (291)
T 3npk_A 206 KLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECE 261 (291)
T ss_dssp HHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHH
No 20
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=23.07 E-value=2.4e+02 Score=23.00 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=30.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH-HHHHHhhccCCCchhHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFL-LWLRAQTVDLSNNASTYSFYMFIWK 201 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~l~~~-l~~~~~~vd~~~~~~~~~fy~~iwk 201 (214)
|.|+|++..++..+..+.........-.........+.+.+....... .-.-++..+.+++....+.++..+.
T Consensus 61 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 61 RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL 134 (375)
T ss_dssp TSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 456777766666655555433332211111122233333333322111 1122333444555555555555443
No 21
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=22.78 E-value=32 Score=30.14 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHH--HHhcCCChhh-----------hHhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100 103 SAVMS--LLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYALFFA 146 (214)
Q Consensus 103 a~~i~--i~KDipDieG-----------Dr~~GirTl~v~lG~k~~~~l~~~ll~~~ 146 (214)
.+|++ |..|+-|+.| |-+.|+.|+|+.+|.+++...+--...-+
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Done!