Query 028100
Match_columns 214
No_of_seqs 184 out of 463
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 09:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028100.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028100hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 36.1 35 0.0026 26.9 6.4 52 100-151 74-126 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 32.1 21 0.0015 28.3 4.2 49 101-149 72-121 (290)
3 d1rtra_ a.128.1.1 (A:) Farnesy 29.4 7.9 0.00057 30.9 1.1 30 107-136 214-254 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 21.4 14 0.001 29.4 1.2 37 102-138 213-262 (299)
5 d1sr9a1 a.5.7.1 (A:437-491) 2- 17.6 25 0.0018 21.5 1.4 12 197-208 42-53 (55)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 17.2 1.7E+02 0.012 22.0 7.1 74 129-202 85-163 (447)
7 d1v4ea_ a.128.1.1 (A:) Octopre 11.8 2.9E+02 0.021 20.8 7.9 46 102-148 65-110 (280)
8 d1wvia_ c.108.1.14 (A:) Putati 9.1 43 0.0031 24.9 0.8 25 108-132 202-228 (253)
9 d2j3wa1 d.110.4.3 (A:1-140) Se 8.4 1.3E+02 0.0095 20.9 3.3 28 185-213 88-115 (140)
10 d1b24a2 d.95.2.1 (A:100-179) D 7.9 19 0.0014 23.4 -1.5 15 107-121 9-23 (80)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=36.09 E-value=35 Score=26.90 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCChhh-hHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100 100 STISAVMSLLKDIPDEDG-DKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 151 (214)
Q Consensus 100 ~~fa~~i~i~KDipDieG-Dr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i 151 (214)
=++-.+-.+--|+||.+. |.+.|..|.-.++|.+.+...+-.++..++-...
T Consensus 74 EllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 74 ECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 344444457889999988 4799999999999999988888777776655543
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=32.10 E-value=21 Score=28.27 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCChhhh-HhcCCccchhhhchHHHHHHHHHHHHHHHHH
Q 028100 101 TISAVMSLLKDIPDEDGD-KQFGFQSISSKLGKENVLRLCVYALFFAYGV 149 (214)
Q Consensus 101 ~fa~~i~i~KDipDieGD-r~~GirTl~v~lG~k~~~~l~~~ll~~~y~~ 149 (214)
++-.+--+--||||+++| .+.|..|.-.+.|.+.+...+-.++..++-.
T Consensus 72 llH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 72 MIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 444444588999999876 5889999999999998887777666655443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.36 E-value=7.9 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHhcCCChhhhH-----------hcCCccchhhhchHHHH
Q 028100 107 SLLKDIPDEDGDK-----------QFGFQSISSKLGKENVL 136 (214)
Q Consensus 107 ~i~KDipDieGDr-----------~~GirTl~v~lG~k~~~ 136 (214)
-+..|+-|+.||. +.|+.|+|+.+|.+++.
T Consensus 214 Qi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~ 254 (290)
T d1rtra_ 214 QIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 254 (290)
T ss_dssp HHHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence 4899999887654 56889999999987753
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=21.42 E-value=14 Score=29.44 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=27.3
Q ss_pred HHHHHH--HHhcCCChhh-----------hHhcCCccchhhhchHHHHHH
Q 028100 102 ISAVMS--LLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRL 138 (214)
Q Consensus 102 fa~~i~--i~KDipDieG-----------Dr~~GirTl~v~lG~k~~~~l 138 (214)
..+|++ |..|+-|+.| |-+.|..|+|+.+|.+++..-
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 344444 8889988876 555688999999999876543
No 5
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.58 E-value=25 Score=21.51 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 028100 197 MFIWKLFYAEYL 208 (214)
Q Consensus 197 ~~iwklf~~ey~ 208 (214)
.-||++|--||+
T Consensus 42 ~~I~~~F~~~Yl 53 (55)
T d1sr9a1 42 KEMWDAFAEEYL 53 (55)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 469999999985
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.17 E-value=1.7e+02 Score=22.03 Aligned_cols=74 Identities=4% Similarity=-0.199 Sum_probs=37.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhh----hHhHHHHHHHHHHHHHH-HHHHHHHhhccCCCchhHHHHHHHHHHH
Q 028100 129 KLGKENVLRLCVYALFFAYGVSVIVGASS----SFQLVKLVSIIGHSTLA-FLLWLRAQTVDLSNNASTYSFYMFIWKL 202 (214)
Q Consensus 129 ~lG~k~~~~l~~~ll~~~y~~~i~~g~~~----~~~~~~~~~~~~h~~l~-~~l~~~~~~vd~~~~~~~~~fy~~iwkl 202 (214)
|.|+|++..++..+..+.......+.... .......+.+.++.... ...-.-++..+.+++....+.++..+.+
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 163 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 163 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch
Confidence 68999998888776665544333222111 12233444455544322 2222334444555555556666655543
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=11.81 E-value=2.9e+02 Score=20.84 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHH
Q 028100 102 ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 148 (214)
Q Consensus 102 fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~ 148 (214)
+-.+--|-.|+.| +.|.+.|..|.-.+.|.+.+...+-.++..++-
T Consensus 65 iH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~ 110 (280)
T d1v4ea_ 65 VHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 110 (280)
T ss_dssp HHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhh
Confidence 3334447899988 678899999999999999988777766666543
No 8
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=9.15 E-value=43 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.8
Q ss_pred HHhc-CC-ChhhhHhcCCccchhhhch
Q 028100 108 LLKD-IP-DEDGDKQFGFQSISSKLGK 132 (214)
Q Consensus 108 i~KD-ip-DieGDr~~GirTl~v~lG~ 132 (214)
.+-| +. |++|=++.|++|.-|+-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 3446 66 9999999999999998774
No 9
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.44 E-value=1.3e+02 Score=20.94 Aligned_cols=28 Identities=14% Similarity=0.479 Sum_probs=22.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhc
Q 028100 185 DLSNNASTYSFYMFIWKLFYAEYLLIHFL 213 (214)
Q Consensus 185 d~~~~~~~~~fy~~iwklf~~ey~l~p~~ 213 (214)
|.++.+.+..|.+-+++++ .+|++=||.
T Consensus 88 d~~~~~~i~~~~~~v~~lY-v~~v~NPfy 115 (140)
T d2j3wa1 88 DVRQEDGIKNFFTDVYDLY-IKFAMNPFY 115 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHH-HHHHHSTTC
T ss_pred CCCcchHHHHHHHHHHHHH-HHHhhCccC
Confidence 4456678999999999876 899998874
No 10
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=7.95 E-value=19 Score=23.38 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.3
Q ss_pred HHHhcCCChhhhHhc
Q 028100 107 SLLKDIPDEDGDKQF 121 (214)
Q Consensus 107 ~i~KDipDieGDr~~ 121 (214)
+.++..-|-||||..
T Consensus 9 AFI~GLYdAEGDKtg 23 (80)
T d1b24a2 9 AFIKGLYVAEGDKTL 23 (80)
T ss_dssp HHHHHHHHHHSCTTC
T ss_pred HHHHhhhhccccchh
Confidence 457777899999854
Done!