BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028101
MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNNEPADEFERRIFGGGY
GNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLREAAR
HFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDAD
FRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL

High Scoring Gene Products

Symbol, full name Information P value
AT1G07210 protein from Arabidopsis thaliana 2.8e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028101
        (214 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2007397 - symbol:AT1G07210 species:3702 "Arabi...   193  2.8e-20   2


>TAIR|locus:2007397 [details] [associations]
            symbol:AT1G07210 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            HAMAP:MF_00270 InterPro:IPR001648 Pfam:PF01084 PRINTS:PR00974
            ProDom:PD002239 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 EMBL:AC067971 Gene3D:4.10.640.10 PANTHER:PTHR13479
            SUPFAM:SSF46911 TIGRFAMs:TIGR00165 EMBL:AF332408 EMBL:AK228540
            IPI:IPI00546767 PIR:C86207 RefSeq:NP_172201.1 UniGene:At.17129
            UniGene:At.48162 ProteinModelPortal:Q9LML3 SMR:Q9LML3 STRING:Q9LML3
            PRIDE:Q9LML3 EnsemblPlants:AT1G07210.1 GeneID:837232
            KEGG:ath:AT1G07210 TAIR:At1g07210 HOGENOM:HOG000243519
            InParanoid:Q9LML3 OMA:TTMGTKA PhylomeDB:Q9LML3
            ProtClustDB:CLSN2682554 ArrayExpress:Q9LML3 Genevestigator:Q9LML3
            Uniprot:Q9LML3
        Length = 261

 Score = 193 (73.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 45/94 (47%), Positives = 61/94 (64%)

Query:   108 SDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPK-DLDLTKPGVRKTRRV 166
             SDG+ GKL+EAA  +  D  +  K+ Y+FRPD +   GM   P+    +  P    ++  
Sbjct:   107 SDGVDGKLKEAALAYNMDEGDGFKE-YSFRPDFNNSWGMNNFPRMQKQMQNPRQNNSKS- 164

Query:   167 EFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKR 200
               EVTT++VL++ADFRNV+FL  FITEAGIIIKR
Sbjct:   165 --EVTTEEVLKNADFRNVRFLANFITEAGIIIKR 196

 Score = 61 (26.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query:     1 MKLARFAFRSINANLSQESYRFSITRSLSTN 31
             M +ARFA RS+N       +R  ++RSL+TN
Sbjct:     1 MSIARFATRSLNNVTFLRPFRPIVSRSLATN 31


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       177   0.00084  109 3  11 22  0.40    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  115 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.20u 0.11s 14.31t   Elapsed:  00:00:01
  Total cpu time:  14.20u 0.11s 14.31t   Elapsed:  00:00:01
  Start:  Fri May 10 02:36:15 2013   End:  Fri May 10 02:36:16 2013

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