BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028106
MGSGSTHDHVAYAPLPTENVIVLPVYYQPDLRRWRRRRNLSRCLCTAAAIASLLAVLVFI
FYPSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGR
ELGSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMVKGELG
VLFFEIPLKAKVSCEVYVNTSNQTIVRQDCYPE

High Scoring Gene Products

Symbol, full name Information P value
AT4G13270 protein from Arabidopsis thaliana 2.7e-52
AT1G52330 protein from Arabidopsis thaliana 6.0e-32
AT3G54200 protein from Arabidopsis thaliana 1.9e-12
AT3G44380 protein from Arabidopsis thaliana 8.7e-08
AT3G05975 protein from Arabidopsis thaliana 1.9e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028106
        (213 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142040 - symbol:AT4G13270 "AT4G13270" species...   542  2.7e-52   1
TAIR|locus:2018154 - symbol:AT1G52330 "AT1G52330" species...   350  6.0e-32   1
TAIR|locus:2080320 - symbol:AT3G54200 "AT3G54200" species...   166  1.9e-12   1
TAIR|locus:2100177 - symbol:AT3G44380 "AT3G44380" species...   128  8.7e-08   1
TAIR|locus:504955821 - symbol:AT3G05975 "AT3G05975" speci...   114  1.9e-05   1


>TAIR|locus:2142040 [details] [associations]
            symbol:AT4G13270 "AT4G13270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000902 "cell morphogenesis" evidence=RCA]
            [GO:0016049 "cell growth" evidence=RCA] [GO:0048193 "Golgi vesicle
            transport" evidence=RCA] InterPro:IPR004864 EMBL:CP002687
            UniGene:At.33396 UniGene:At.70329 Pfam:PF03168 EMBL:BT021984
            EMBL:BT023476 IPI:IPI00523539 RefSeq:NP_193063.2
            ProteinModelPortal:Q52K84 SMR:Q52K84 PRIDE:Q52K84
            EnsemblPlants:AT4G13270.1 GeneID:826957 KEGG:ath:AT4G13270
            TAIR:At4g13270 HOGENOM:HOG000005936 InParanoid:Q52K84 OMA:SCEVYVN
            PhylomeDB:Q52K84 ProtClustDB:CLSN2690897 Genevestigator:Q52K84
            Uniprot:Q52K84
        Length = 215

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 113/216 (52%), Positives = 145/216 (67%)

Query:     1 MGSGSTHDH-VAYAPLPT----ENVIVLPVYYQPDXXXXXXXXXXXXXXXXXXXXXXXXX 55
             M S    D+ + Y PLP+    ++VI+L  Y +                           
Sbjct:     1 MASSKHEDYGIPYTPLPSSQPSQSVILLTPYRR---HRRPSLLRNLRCSLLFTAVILLLS 57

Query:    56 XXVFIFYPSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSI 115
               V++ YPSDP + ++RI+LNHI V  S +  LDLSFSL +KV NRDFFSL+YDSL VSI
Sbjct:    58 AAVYLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVSI 117

Query:   116 GYRGRELGSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMV 175
             GYRGRELG V+S GG ++AR SSY++A+L+L+GLEV+HDVIYLI DL KGVIPFDT+  V
Sbjct:   118 GYRGRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQV 177

Query:   176 KGELGVLFFEIPLKAKVSCEVYVNTSNQTIVRQDCY 211
             +G+LGVL F IP++ KVSCEVYVN +NQ I  QDC+
Sbjct:   178 QGDLGVLLFNIPIQGKVSCEVYVNVNNQKISHQDCH 213


>TAIR|locus:2018154 [details] [associations]
            symbol:AT1G52330 "AT1G52330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004864 EMBL:CP002684 UniGene:At.37618
            UniGene:At.66802 Pfam:PF03168 HOGENOM:HOG000005936 EMBL:AY924709
            EMBL:DQ132677 IPI:IPI00555530 RefSeq:NP_001077704.1
            ProteinModelPortal:Q5BPW9 PRIDE:Q5BPW9 EnsemblPlants:AT1G52330.2
            GeneID:841664 KEGG:ath:AT1G52330 TAIR:At1g52330 eggNOG:NOG284882
            PhylomeDB:Q5BPW9 ProtClustDB:CLSN2679483 Genevestigator:Q5BPW9
            Uniprot:Q5BPW9
        Length = 227

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 64/134 (47%), Positives = 95/134 (70%)

Query:    58 VFIFYPSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGY 117
             ++IF+PSDP +++ R+ ++H+ V+  P P++D++  + +KV N D +S ++  LDV+I Y
Sbjct:    59 IYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDY 118

Query:   118 RGRELGSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMVKG 177
             RG+ LG V S GG V A GSSY++A  +L+G+ V  DVI+LI DL KG + FDTVT   G
Sbjct:   119 RGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNG 178

Query:   178 ELGVLFFEIPLKAK 191
             +LGVLFF  PLK +
Sbjct:   179 KLGVLFFRFPLKVR 192


>TAIR|locus:2080320 [details] [associations]
            symbol:AT3G54200 "AT3G54200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR004864
            GO:GO:0009506 EMBL:CP002686 GO:GO:0046658 EMBL:AL132957
            Pfam:PF03168 EMBL:AK229134 IPI:IPI00521889 PIR:T47579
            RefSeq:NP_190988.1 UniGene:At.27525 ProteinModelPortal:Q9M386
            STRING:Q9M386 PRIDE:Q9M386 EnsemblPlants:AT3G54200.1 GeneID:824587
            KEGG:ath:AT3G54200 TAIR:At3g54200 InParanoid:Q9M386 OMA:NASSMET
            PhylomeDB:Q9M386 ProtClustDB:CLSN2685083 Genevestigator:Q9M386
            Uniprot:Q9M386
        Length = 235

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/155 (24%), Positives = 83/155 (53%)

Query:    60 IFYPSDPYLQLARIHLNHIRVNSSP---QPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIG 116
             +F P  P   +  + ++ ++ + +P   +  L+L+ ++ + + N +    +YDS    + 
Sbjct:    76 LFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLN 135

Query:   117 YRGRELGSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMVK 176
             YRG+ +G       R+ AR +  +N +L L    ++ +   L+ D++ GVIP +T   V 
Sbjct:   136 YRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSET-QLLSDVMAGVIPLNTFVKVT 194

Query:   177 GELGVL-FFEIPLKAKVSCEVYVNTSNQTIVRQDC 210
             G++ VL  F+I +++  SC++ ++ S++ +  Q C
Sbjct:   195 GKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHC 229


>TAIR|locus:2100177 [details] [associations]
            symbol:AT3G44380 "AT3G44380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009269 "response to
            desiccation" evidence=IEA] InterPro:IPR013990 SMART:SM00769
            InterPro:IPR004864 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0009269 EMBL:AL138641 Pfam:PF03168 UniGene:At.1345
            IPI:IPI00523939 PIR:T47428 RefSeq:NP_190024.1
            ProteinModelPortal:Q9M287 PaxDb:Q9M287 PRIDE:Q9M287
            EnsemblPlants:AT3G44380.1 GeneID:823563 KEGG:ath:AT3G44380
            TAIR:At3g44380 eggNOG:NOG299663 HOGENOM:HOG000006316
            InParanoid:Q9M287 OMA:VHVTNPN PhylomeDB:Q9M287
            ProtClustDB:CLSN2684481 Genevestigator:Q9M287 Uniprot:Q9M287
        Length = 186

 Score = 128 (50.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 36/147 (24%), Positives = 63/147 (42%)

Query:    63 PSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGREL 122
             P DP   L  I L  +++N    P LD    L V V N +  +++Y S  ++I Y G  L
Sbjct:    33 PKDPTFHLISIDLTSLKLNL---PVLDAELMLTVHVTNPNIAAIHYSSTKMTILYDGTVL 89

Query:   123 GSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMVKGELGVL 182
             GS     G   AR    +    +L+G+E+         D+    +  +    ++G   VL
Sbjct:    90 GSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFSDVANREMKLEAKLTIEGAAKVL 149

Query:   183 FFEIPLKAKVSCEVYVNTSNQTIVRQD 209
             +++   +  V   V V+     ++ Q+
Sbjct:   150 WWDHSFRVHVDSFVTVDPVFLDVIGQE 176


>TAIR|locus:504955821 [details] [associations]
            symbol:AT3G05975 "AT3G05975" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR004864 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC013454 Pfam:PF03168 EMBL:DQ446637
            IPI:IPI00547792 RefSeq:NP_683533.1 UniGene:At.65067
            ProteinModelPortal:Q3EBB9 EnsemblPlants:AT3G05975.1 GeneID:819768
            KEGG:ath:AT3G05975 TAIR:At3g05975 eggNOG:NOG266939
            HOGENOM:HOG000241501 InParanoid:Q3EBB9 OMA:RRICCIV PhylomeDB:Q3EBB9
            ProtClustDB:CLSN2917926 Genevestigator:Q3EBB9 Uniprot:Q3EBB9
        Length = 189

 Score = 114 (45.2 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 34/154 (22%), Positives = 74/154 (48%)

Query:    60 IFYPSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKV--HNRDFFSLNYDSLDVSIGY 117
             +F P  P LQ     ++ I  N S    + L+F+L +++   N +     Y +++  + Y
Sbjct:    30 VFKPKHPILQTVSSTVDGISTNISLPYEVQLNFTLTLEMLLKNPNVADFEYKTVENLVYY 89

Query:   118 RGRELGSVRSHGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKGVIPFDTVTMVKG 177
             R   +G++      + A+GS  +   L L   + + ++  +++D++ G I  +T   + G
Sbjct:    90 RDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMPG 149

Query:   178 ELGVL-FFEIPLKAKVSCEVYVNTSNQTIVRQDC 210
             ++ +L  F+IPL +   C + +   +  +  Q C
Sbjct:   150 KITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVC 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       186   0.00083  110 3  11 22  0.42    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  148 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.95u 0.12s 16.07t   Elapsed:  00:00:01
  Total cpu time:  15.95u 0.12s 16.07t   Elapsed:  00:00:01
  Start:  Mon May 20 15:14:29 2013   End:  Mon May 20 15:14:30 2013

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