BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028106
         (213 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O33507|OMPC_RAHAQ Outer membrane protein C (Fragment) OS=Rahnella aquatilis GN=ompC
           PE=3 SV=1
          Length = 342

 Score = 31.2 bits (69), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 95  VVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRSHGGR--VRARGSSY 139
           V+   N+DFF L  D LDV++ Y+G+   +  S  GR  +R  G  Y
Sbjct: 128 VLTYRNKDFFGL-VDGLDVAVQYQGKNGSATESTMGRDVLRQNGDGY 173


>sp|A0RQ71|SYD_CAMFF Aspartate--tRNA ligase OS=Campylobacter fetus subsp. fetus (strain
           82-40) GN=aspS PE=3 SV=1
          Length = 584

 Score = 30.8 bits (68), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 130 GRVRARGSSYVNASLKLNGLEVIHDVIYL 158
           G +RARG   +N  LK   +EVI D +Y+
Sbjct: 74  GTIRARGEGLINPKLKTGEIEVIVDELYI 102


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,353,621
Number of Sequences: 539616
Number of extensions: 3073114
Number of successful extensions: 6431
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6430
Number of HSP's gapped (non-prelim): 2
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)