Query 028106
Match_columns 213
No_of_seqs 168 out of 727
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.8 1.7E-08 5.9E-13 80.4 9.6 101 64-175 43-145 (174)
2 1xo8_A AT1G01470; structural g 98.7 8.9E-09 3E-13 80.3 5.4 101 64-175 20-122 (151)
3 3but_A Uncharacterized protein 98.4 2.6E-06 8.8E-11 65.1 11.0 74 89-165 17-91 (136)
4 2l0d_A Cell surface protein; s 44.7 82 0.0028 22.4 10.2 68 65-144 2-69 (114)
5 2kj1_A BM2 protein; cytoplasmi 26.7 15 0.00051 24.3 0.2 13 91-103 9-21 (89)
6 2l6w_A Beta-type platelet-deri 28.0 18 0.00063 21.0 0.0 14 56-69 26-39 (39)
7 3p5s_A CD38 molecule; cyclic A 21.2 20 0.00069 29.9 0.0 27 39-65 10-37 (278)
8 2v3s_A Serine/threonine-protei 18.2 1.2E+02 0.0041 21.0 3.4 17 92-108 3-21 (96)
9 3qde_A Cellobiose phosphorylas 18.1 1.8E+02 0.0062 27.6 5.9 57 58-129 741-797 (811)
10 2kut_A Uncharacterized protein 17.3 90 0.0031 22.6 2.8 65 77-145 2-72 (122)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.83 E-value=1.7e-08 Score=80.36 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCCeEEEEEEEEcceeecCCCCceeeEEEEEEEEEEcCCceEEEEcceEEEEEECCEEEeeeEeCC-CccCCCCeEEEEE
Q 028106 64 SDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRSHG-GRVRARGSSYVNA 142 (213)
Q Consensus 64 ~~P~~~V~~~~l~~f~~~~~p~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~-f~~~~r~tt~v~~ 142 (213)
+.|++++.++++.+++. ..++|.+.++++|||-+++.+.+++.++.-+|..++++.++. +.+++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l-------~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR-------DGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECS-------SSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEecccc-------ceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 78999999999998865 346789999999999999999999999999999999999875 7999999999999
Q ss_pred EEEEcceeeccchHHHHhhhhc-CeEeEEEEEEE
Q 028106 143 SLKLNGLEVIHDVIYLIEDLIK-GVIPFDTVTMV 175 (213)
Q Consensus 143 ~v~~~~~~l~~~~~~l~~D~~~-G~v~l~~~~~v 175 (213)
++++....+ .++++|+.. +.++.++++++
T Consensus 116 pv~v~~~~l----~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 116 PVKVAYSIA----VSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEEESHHHH----HHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEEHHHH----HHHHHhcCCCCccceEEEEEE
Confidence 988775332 234455543 45665554443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.75 E-value=8.9e-09 Score=80.28 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCCeEEEEEEEEcceeecCCCCceeeEEEEEEEEEEcCCceEEEEcceEEEEEECCEEEeeeEeC-CCccCCCCeEEEEE
Q 028106 64 SDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRSH-GGRVRARGSSYVNA 142 (213)
Q Consensus 64 ~~P~~~V~~~~l~~f~~~~~p~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~~~~r~tt~v~~ 142 (213)
+.|++++.++++.+++. ...+|.+.++++|||-+++.+.+.+.++.-+|..++++..+ ++.+++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 67999999999987754 34578999999999999999999999999999999999986 58999999999998
Q ss_pred EEEEcceeeccchHHHHhhhh-cCeEeEEEEEEE
Q 028106 143 SLKLNGLEVIHDVIYLIEDLI-KGVIPFDTVTMV 175 (213)
Q Consensus 143 ~v~~~~~~l~~~~~~l~~D~~-~G~v~l~~~~~v 175 (213)
++++.... ..++.+++. .+.++.++++++
T Consensus 93 pv~v~~~~----l~~~~~~l~~~~~i~Y~l~g~l 122 (151)
T 1xo8_A 93 PVVVPYSI----LFNLARDVGVDWDIDYELQIGL 122 (151)
T ss_dssp CCCEEHHH----HHHHHHHHHHHSEEEEEEEEEE
T ss_pred EEEEEHHH----HHHHHHhcccCCcccEEEEEEE
Confidence 88766433 234455553 456666654444
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.42 E-value=2.6e-06 Score=65.13 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=61.5
Q ss_pred eEEEEEEEEEEcCCceEEEEcceEEEEEECCEEEeeeEe-CCCccCCCCeEEEEEEEEEcceeeccchHHHHhhhhcC
Q 028106 89 DLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRS-HGGRVRARGSSYVNASLKLNGLEVIHDVIYLIEDLIKG 165 (213)
Q Consensus 89 ~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~~~~r~tt~v~~~v~~~~~~l~~~~~~l~~D~~~G 165 (213)
...|.+.+++.|||.+++.+++.+..++.+|..+|++.. ..+.+++.+++.+.+++.++..++.. .+.+.+.+|
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~---~~~~hi~ng 91 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE---WWVTHIANG 91 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT---HHHHHHHTT
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH---HHHHHhhcC
Confidence 456889999999999999999999999999999999985 67899999999999998888655433 345555555
No 4
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=44.65 E-value=82 Score=22.41 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCeEEEEEEEEcceeecCCCCceeeEEEEEEEEEEcCCceEEEEcceEEEEEECCEEEeeeEeCCCccCCCCeEEEEEEE
Q 028106 65 DPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRSHGGRVRARGSSYVNASL 144 (213)
Q Consensus 65 ~P~~~V~~~~l~~f~~~~~p~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~~~~r~tt~v~~~v 144 (213)
.|++.|.++.-.. +.-.-..+++++|+|.-... =.+..+.++.+|..++...+++ +.++.++.+.++.
T Consensus 2 ~PDL~vt~itP~~--------~~~~~~~ti~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~w 69 (114)
T 2l0d_A 2 IPDLVPVSLTPVT--------VVPNTVNTMTATIENQGNKD--STSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFHW 69 (114)
T ss_dssp CCCEEEEEEECSE--------ECTTSEEEEEEEEEECSSSC--BCCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEEE
T ss_pred CCCcEEEeccCCC--------cCCCCeEEEEEEEEECCCCC--CCCEEEEEEECCEEEcceeccc--ccCCCEEEEEEEE
Confidence 4777777763221 12334557788999987432 1456777888999999887765 4455555555543
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=26.68 E-value=15 Score=24.34 Aligned_cols=13 Identities=0% Similarity=0.268 Sum_probs=3.6
Q ss_pred EEEEEEEEEcCCc
Q 028106 91 SFSLVVKVHNRDF 103 (213)
Q Consensus 91 ~l~~~v~v~NPN~ 103 (213)
..++.++++|||+
T Consensus 9 gv~lki~ir~pnk 21 (89)
T 2kj1_A 9 GVNMKIRIKGPNK 21 (89)
T ss_dssp ---------CCCH
T ss_pred cCceEEEecCCCH
Confidence 4577899999996
No 6
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=28.00 E-value=18 Score=20.97 Aligned_cols=14 Identities=7% Similarity=0.600 Sum_probs=9.5
Q ss_pred heeeEEecCCCeEE
Q 028106 56 VLVFIFYPSDPYLQ 69 (213)
Q Consensus 56 ~~~~v~~P~~P~~~ 69 (213)
++.++.|-+.|+++
T Consensus 26 IiLi~~w~qKPrYe 39 (39)
T 2l6w_A 26 IILIMLWQKKPRYE 39 (39)
Confidence 35566688888763
No 7
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=21.21 E-value=20 Score=29.94 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=0.0
Q ss_pred CcceehhHHHHHHHHHh-heeeEEecCC
Q 028106 39 NLSRCLCTAAAIASLLA-VLVFIFYPSD 65 (213)
Q Consensus 39 ~~~~c~~~~~~~l~ll~-~~~~v~~P~~ 65 (213)
+.|.|++.+++++++++ ++.+++||+.
T Consensus 10 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 37 (278)
T 3p5s_A 10 KLCWCVLLFFLVAGITGGAIGIYKWHYS 37 (278)
T ss_dssp ----------------------------
T ss_pred EEeehHHHHHHHHHHHhheeeEEeccCC
Confidence 34445444433333223 3445556654
No 8
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=18.23 E-value=1.2e+02 Score=21.04 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=12.4
Q ss_pred EEEEEEEEcCCc-e-EEEE
Q 028106 92 FSLVVKVHNRDF-F-SLNY 108 (213)
Q Consensus 92 l~~~v~v~NPN~-~-~i~y 108 (213)
+++.++.||+++ . .|+|
T Consensus 3 v~LvLRlRn~~rELnDIrF 21 (96)
T 2v3s_A 3 ISLVLRLRNSKKELNDIRF 21 (96)
T ss_dssp EEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEeccccchhcceEE
Confidence 467899999996 3 4444
No 9
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=18.12 E-value=1.8e+02 Score=27.64 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=34.5
Q ss_pred eeEEecCCCeEEEEEEEEcceeecCCCCceeeEEEEEEEEEEcCCceEEEEcceEEEEEECCEEEeeeEeCC
Q 028106 58 VFIFYPSDPYLQLARIHLNHIRVNSSPQPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRGRELGSVRSHG 129 (213)
Q Consensus 58 ~~v~~P~~P~~~V~~~~l~~f~~~~~p~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~ 129 (213)
-+.+.|..|.. ...+++. +.+.. -.+.|+++||+... .....+.-+|+.+....+|-
T Consensus 741 ~L~i~P~LP~~-w~~~~~~-~~~~g---------~~~~I~v~~~~~~~----~~~~~~~~dg~~~~~~~i~~ 797 (811)
T 3qde_A 741 GLKIDPCIPKA-WDGYKVT-RYFRG---------STYEITVKNPNHVS----KGVAKITVDGNEISGNILPV 797 (811)
T ss_dssp EEEECCBCCTT-CCEEEEE-EEETT---------EEEEEEEECTTCCS----BCEEEEEETTEECSSSBCCC
T ss_pred EEEEeCcCCcc-cCcEEEE-EEECC---------EEEEEEEEccCCCC----CCcEEEEECCEECcCCeeee
Confidence 45567877776 5566665 34432 14578889998532 22355667888875545553
No 10
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=17.32 E-value=90 Score=22.57 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred ceeecCCC-CceeeEEEEEEEEEEcCCceEEEEcceEEEEEECC-----EEEeeeEeCCCccCCCCeEEEEEEEE
Q 028106 77 HIRVNSSP-QPTLDLSFSLVVKVHNRDFFSLNYDSLDVSIGYRG-----RELGSVRSHGGRVRARGSSYVNASLK 145 (213)
Q Consensus 77 ~f~~~~~p-~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g-----~~lg~~~~p~f~~~~r~tt~v~~~v~ 145 (213)
++.++..| ++.-.-.++++++|+|---.... +..+.++.+| ..+|...+ ..+.++.++.+.+++.
T Consensus 2 ~~~is~sP~~p~~g~~vTvsatVkN~Gt~~s~--a~~V~~yl~~p~~gg~~vgt~tv--~~LaaG~s~t~~v~~~ 72 (122)
T 2kut_A 2 DLPITLSKETPFEGEEITVSARVTNRGAAEAH--NVPVAVYLGNPAQGGVEIGRDTI--SRIPVGGTGLARVQWK 72 (122)
T ss_dssp CCSEECCTTSCCTTCEEEEEEEEECCSSSCBC--CCCEEECSSCTTTCCCCCBCCCC--SCBCTTCEEECCEEEE
T ss_pred CcceecCCCCCCCCCeEEEEEEEEeCCCcccC--cEEEEEEeCCCccCCeEEeeEEc--cccCCCCeEEEEEEEe
Done!