BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028107
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
           Two Bound Peptides
          Length = 1019

 Score = 33.1 bits (74), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 169 DAHVGSWSDNPSVPDCSHWCL 189
           D H+GS SD P++P  SH+C 
Sbjct: 91  DVHIGSLSDPPNIPGLSHFCF 111


>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
          Length = 1019

 Score = 32.7 bits (73), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 169 DAHVGSWSDNPSVPDCSHWC 188
           D H+GS SD P++P  SH+C
Sbjct: 91  DVHIGSLSDPPNIPGLSHFC 110


>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
          Length = 978

 Score = 32.7 bits (73), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 169 DAHVGSWSDNPSVPDCSHWC 188
           D H+GS SD P++P  SH+C
Sbjct: 50  DVHIGSLSDPPNIPGLSHFC 69


>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
 pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
          Length = 990

 Score = 29.6 bits (65), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 169 DAHVGSWSDNPSVPDCSHWC 188
           D H+GS SD P++   SH+C
Sbjct: 62  DVHIGSLSDPPNIAGLSHFC 81


>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-40)
 pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-40)
 pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
 pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
 pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Glucagon
 pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Glucagon
 pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
           Enzyme In Complex With Insulin B Chain
 pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
           Enzyme In Complex With Insulin B Chain
 pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
           Complex With Insulin B Chain
 pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
           Complex With Insulin B Chain
 pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
           Complexed With Co-Purified Peptides.
 pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
           Complexed With Co-Purified Peptides.
 pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Transforming Growth Factor-Alpha
 pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Transforming Growth Factor-Alpha
          Length = 990

 Score = 29.6 bits (65), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 169 DAHVGSWSDNPSVPDCSHWC 188
           D H+GS SD P++   SH+C
Sbjct: 62  DVHIGSLSDPPNIAGLSHFC 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,895,697
Number of Sequences: 62578
Number of extensions: 278116
Number of successful extensions: 380
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 6
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)