Query 028107
Match_columns 213
No_of_seqs 134 out of 722
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 2E-69 4.3E-74 492.0 19.1 199 1-205 170-386 (387)
2 PF13839 PC-Esterase: GDSL/SGN 100.0 5.3E-39 1.1E-43 274.2 14.1 178 1-205 70-262 (263)
3 cd01842 SGNH_hydrolase_like_5 96.3 0.018 3.9E-07 48.2 7.6 102 43-164 51-152 (183)
4 cd01832 SGNH_hydrolase_like_1 85.6 4 8.6E-05 32.5 7.1 70 79-165 87-156 (185)
5 cd01833 XynB_like SGNH_hydrola 85.6 5.5 0.00012 30.8 7.8 78 79-174 59-143 (157)
6 cd01828 sialate_O-acetylestera 84.9 3.6 7.7E-05 32.4 6.4 68 79-164 67-134 (169)
7 cd01841 NnaC_like NnaC (CMP-Ne 83.1 6.1 0.00013 31.2 7.1 81 79-174 70-160 (174)
8 cd04502 SGNH_hydrolase_like_7 81.6 13 0.00029 29.2 8.6 78 79-174 69-157 (171)
9 cd01836 FeeA_FeeB_like SGNH_hy 73.3 7.2 0.00016 31.2 4.8 86 79-174 86-175 (191)
10 cd01827 sialate_O-acetylestera 68.6 33 0.0007 27.2 7.7 81 79-174 88-173 (188)
11 cd01844 SGNH_hydrolase_like_6 67.1 23 0.0005 28.1 6.5 30 81-112 75-104 (177)
12 cd01829 SGNH_hydrolase_peri2 S 64.8 18 0.00039 29.1 5.5 94 42-164 59-153 (200)
13 cd00229 SGNH_hydrolase SGNH_hy 61.3 65 0.0014 23.9 9.0 94 42-167 65-160 (187)
14 cd01821 Rhamnogalacturan_acety 60.7 41 0.00088 27.1 6.9 66 79-163 89-155 (198)
15 cd04501 SGNH_hydrolase_like_4 56.8 39 0.00084 26.7 6.1 72 79-165 78-149 (183)
16 cd01838 Isoamyl_acetate_hydrol 56.6 19 0.00042 28.5 4.3 81 79-165 87-167 (199)
17 cd04506 SGNH_hydrolase_YpmR_li 56.4 35 0.00076 27.5 5.9 81 79-173 101-190 (204)
18 cd01823 SEST_like SEST_like. A 52.0 39 0.00084 28.5 5.6 85 79-167 126-218 (259)
19 cd01834 SGNH_hydrolase_like_2 48.0 38 0.00082 26.5 4.7 74 79-164 84-157 (191)
20 cd01825 SGNH_hydrolase_peri1 S 47.6 1.1E+02 0.0024 23.9 7.4 73 79-165 76-148 (189)
21 cd01820 PAF_acetylesterase_lik 45.5 73 0.0016 26.2 6.2 79 79-174 108-196 (214)
22 cd00885 cinA Competence-damage 44.5 17 0.00037 29.7 2.2 25 181-205 140-164 (170)
23 cd01831 Endoglucanase_E_like E 44.4 1.5E+02 0.0033 23.1 9.0 75 79-174 76-154 (169)
24 cd01839 SGNH_arylesterase_like 44.2 66 0.0014 26.1 5.7 86 79-174 100-191 (208)
25 PRK03670 competence damage-ind 43.5 17 0.00038 31.8 2.2 23 182-204 150-172 (252)
26 cd01835 SGNH_hydrolase_like_3 36.2 1.1E+02 0.0023 24.4 5.6 66 79-164 94-159 (193)
27 PF09363 XFP_C: XFP C-terminal 36.1 44 0.00095 28.6 3.4 29 146-174 55-86 (203)
28 COG0180 TrpS Tryptophanyl-tRNA 34.0 38 0.00083 30.8 2.9 37 79-115 58-95 (314)
29 cd01830 XynE_like SGNH_hydrola 33.5 2.1E+02 0.0046 23.1 7.1 31 79-113 101-131 (204)
30 PF00919 UPF0004: Uncharacteri 28.7 1.3E+02 0.0028 22.3 4.6 41 41-107 35-75 (98)
31 PF13472 Lipase_GDSL_2: GDSL-l 28.4 1.4E+02 0.003 22.4 4.9 90 78-188 83-172 (179)
32 PF08331 DUF1730: Domain of un 23.9 1.8E+02 0.0039 20.4 4.4 30 77-106 47-76 (78)
33 PF11663 Toxin_YhaV: Toxin wit 22.7 39 0.00085 27.2 0.8 12 191-202 126-137 (140)
34 PRK03673 hypothetical protein; 21.7 65 0.0014 30.2 2.1 22 182-203 143-164 (396)
35 PRK00549 competence damage-ind 21.4 67 0.0014 30.1 2.2 21 182-202 142-162 (414)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=2e-69 Score=491.97 Aligned_cols=199 Identities=33% Similarity=0.680 Sum_probs=173.1
Q ss_pred CEEEEEecceeecCCCCCCCCCcceeeEEeccCccccccCCCCcEEEEecccccccceeeccceeeecCCeeccCCCHHH
Q 028107 1 MICLLMTVFLVQPGPVPRHAPKRVKSTLKLDQMDHISNEWTDTDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKLGMPTTT 80 (213)
Q Consensus 1 tv~~~wspfLV~~~~~~~~~~~~~~~~l~lD~~d~~~~~W~~~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (213)
||+||||||||++++++ + ..+|+||++|++++.|+++|||||||||||++.+.+..++|++.|+....+|++.+
T Consensus 170 TV~~ywspfLV~~~~~~---~---~~~l~LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~ 243 (387)
T PLN02629 170 SISFYKAPYLVDIDAVQ---G---KRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLV 243 (387)
T ss_pred EEEEEecceEEeeecCC---C---ceeEEecCcchhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHH
Confidence 79999999999987543 1 24799999999899999999999999999998877665567888888788999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccC---CCC-----CccccccccCCCCCCC-CcchHHHHHHHHHHhc
Q 028107 81 AFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSG---RNR-----NSCKVSRHPSLDTKGK-DRSSISDTIIDVVKKT 151 (213)
Q Consensus 81 A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g---~~G-----g~C~~~~~P~~~~~~~-~~~~~~~i~~~~~~~~ 151 (213)
||++||+||++||++++++.+++|||||+||+||+| |+| |+|++++.|+.+++.. .....+++++++++++
T Consensus 244 A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~ 323 (387)
T PLN02629 244 ALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGM 323 (387)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999997 665 4698888899865422 2233445889999999
Q ss_pred CCceEEEecCCcccCCCCCCCCCCCCC---------CCCCCcccccCCCcchHHHHHHHHHHH
Q 028107 152 AAPVTVLHVTPMGAFRGDAHVGSWSDN---------PSVPDCSHWCLPGVPDMWNEILFSYLL 205 (213)
Q Consensus 152 ~~~v~lLdiT~ls~~R~DgHps~y~~~---------~~~~DC~HWCLPGv~DtWNelL~~~L~ 205 (213)
+.+|+|||||+||++|||||||+|+++ ..++||+||||||||||||||||++|+
T Consensus 324 ~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 324 HNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred CCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence 999999999999999999999999642 357999999999999999999999997
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=100.00 E-value=5.3e-39 Score=274.23 Aligned_cols=178 Identities=33% Similarity=0.674 Sum_probs=136.8
Q ss_pred CEEEEEecceeecCCCCCCCCCcceeeEEeccCc-cccccCC----CCcEEEEecccccccceeeccceeeecCCeeccC
Q 028107 1 MICLLMTVFLVQPGPVPRHAPKRVKSTLKLDQMD-HISNEWT----DTDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKLG 75 (213)
Q Consensus 1 tv~~~wspfLV~~~~~~~~~~~~~~~~l~lD~~d-~~~~~W~----~~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~~ 75 (213)
||+|+|+|||++. +|.++ +.+..|. ..||||||+|+||.+.+.+..+ ++. .+
T Consensus 70 ~~~f~~~p~l~~~----------------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~~~~~~~-----~~~--~~ 126 (263)
T PF13839_consen 70 TLSFYWDPFLVDQ----------------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRRSGFIEW-----GDN--KE 126 (263)
T ss_pred EEEEecccccccc----------------ccccchhhhccccccccCCCEEEEEcchhhhhcchhccc-----CCC--cC
Confidence 6899999999976 33333 2344565 7899999999999977655433 222 45
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCC--ceEEEeeeccccccC---CCCCccccccccCCCCC-CCCcchHHHHHHHHHH
Q 028107 76 MPTTTAFKAALNTWASWVDTSINTNR--TSVFFRTFEASHWSG---RNRNSCKVSRHPSLDTK-GKDRSSISDTIIDVVK 149 (213)
Q Consensus 76 ~~~~~A~~~al~t~~~wv~~~~~~~~--~~vffRt~SP~Hf~g---~~Gg~C~~~~~P~~~~~-~~~~~~~~~i~~~~~~ 149 (213)
+...++|+.+|+++++|+.+.+++.+ ++||||+++|+||++ ++||.|...+ .... .....++++++.+++
T Consensus 127 ~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~~~~---~~~~~~~~~~~~~~~~~~~~- 202 (263)
T PF13839_consen 127 INPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCNPPR---REEITNEQIDELNEALREAL- 202 (263)
T ss_pred cchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcCccc---ccCCCHHHHHHHHHHHHHHh-
Confidence 56789999999999999988887766 899999999999998 5799998111 1110 111233444444444
Q ss_pred hcCCceEEEec-CCcccCCC-CCCCCCCCCCCC--CCCcccccCCCcchHHHHHHHHHHH
Q 028107 150 KTAAPVTVLHV-TPMGAFRG-DAHVGSWSDNPS--VPDCSHWCLPGVPDMWNEILFSYLL 205 (213)
Q Consensus 150 ~~~~~v~lLdi-T~ls~~R~-DgHps~y~~~~~--~~DC~HWCLPGv~DtWNelL~~~L~ 205 (213)
..+.++++||| |.++.+|+ |||||+|++... .+||+|||+|||+|+||+|||++|+
T Consensus 203 ~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~~~lc 262 (263)
T PF13839_consen 203 KKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLLNLLC 262 (263)
T ss_pred hcCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHHHHhh
Confidence 45789999999 99999999 999999987533 5999999999999999999999997
No 3
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.33 E-value=0.018 Score=48.16 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=60.6
Q ss_pred CcEEEEecccccccceeeccceeeecCCeeccCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCcc
Q 028107 43 TDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKLGMPTTTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSC 122 (213)
Q Consensus 43 ~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~~~~~~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C 122 (213)
.||+|||+|.|=. |++.. ...+-|++-|.+++.-+.+- -|.+++++|.|++|-= ++-+||-=
T Consensus 51 ~DVIi~Ns~LWDl--------~ry~~--------~~~~~Y~~NL~~Lf~rLk~~-lp~~allIW~tt~Pv~-~~~~ggfl 112 (183)
T cd01842 51 LDLVIMNSCLWDL--------SRYQR--------NSMKTYRENLERLFSKLDSV-LPIECLIVWNTAMPVA-EEIKGGFL 112 (183)
T ss_pred eeEEEEecceecc--------cccCC--------CCHHHHHHHHHHHHHHHHhh-CCCccEEEEecCCCCC-cCCcCcee
Confidence 5999999999821 11111 12578999999998766543 3667899999999972 22223311
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCcc
Q 028107 123 KVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVLHVTPMG 164 (213)
Q Consensus 123 ~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdiT~ls 164 (213)
..+-.++......+.-+.|.+.+++.++ ..+.++|...-.
T Consensus 113 ~~~~~~~~~~lr~dv~eaN~~A~~va~~--~~~dVlDLh~~f 152 (183)
T cd01842 113 LPELHDLSKSLRYDVLEGNFYSATLAKC--YGFDVLDLHYHF 152 (183)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHH--cCceeeehHHHH
Confidence 1110011111112334566666677665 478899987766
No 4
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=85.65 E-value=4 Score=32.45 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++++++.+. .....|++-|..|.- . .. |+.........+++++++++.++ ..+.++
T Consensus 87 ~~~~~~~~~~~i~~i~----~~~~~vil~~~~~~~-~---------~~-~~~~~~~~~~~~~n~~l~~~a~~--~~v~~v 149 (185)
T cd01832 87 PDTYRADLEEAVRRLR----AAGARVVVFTIPDPA-V---------LE-PFRRRVRARLAAYNAVIRAVAAR--YGAVHV 149 (185)
T ss_pred HHHHHHHHHHHHHHHH----hCCCEEEEecCCCcc-c---------cc-hhHHHHHHHHHHHHHHHHHHHHH--cCCEEE
Confidence 4568888888777663 235578887765541 0 01 22111001123456666666654 468899
Q ss_pred ecCCccc
Q 028107 159 HVTPMGA 165 (213)
Q Consensus 159 diT~ls~ 165 (213)
|+..+..
T Consensus 150 d~~~~~~ 156 (185)
T cd01832 150 DLWEHPE 156 (185)
T ss_pred ecccCcc
Confidence 9987754
No 5
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=85.61 E-value=5.5 Score=30.85 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhc---CCce
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKT---AAPV 155 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~---~~~v 155 (213)
.+.|+..++++++.+.+. ..+.++++-+..|.-.. .. .....++++++.++.++. +..+
T Consensus 59 ~~~~~~~~~~~i~~i~~~--~p~~~ii~~~~~p~~~~-----~~-----------~~~~~~~n~~l~~~~~~~~~~~~~v 120 (157)
T cd01833 59 PDTAPDRLRALIDQMRAA--NPDVKIIVATLIPTTDA-----SG-----------NARIAEYNAAIPGVVADLRTAGSPV 120 (157)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCeEEEEEeCCCCCCc-----ch-----------hHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 367778888777766433 23566777776553210 00 112235677777666543 3679
Q ss_pred EEEecCCcc---cCCCCC-CCCC
Q 028107 156 TVLHVTPMG---AFRGDA-HVGS 174 (213)
Q Consensus 156 ~lLdiT~ls---~~R~Dg-Hps~ 174 (213)
.++|+.... .+.+|| ||+.
T Consensus 121 ~~vd~~~~~~~~~~~~Dg~Hpn~ 143 (157)
T cd01833 121 VLVDMSTGYTTADDLYDGLHPND 143 (157)
T ss_pred EEEecCCCCCCcccccCCCCCch
Confidence 999999886 578888 9874
No 6
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.88 E-value=3.6 Score=32.43 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|++.++++++.+.+. ..+.+|++-+..|.. +.. + .......+++++++++.++ .++.++
T Consensus 67 ~~~~~~~l~~li~~~~~~--~~~~~vi~~~~~p~~------~~~-----~---~~~~~~~~~n~~l~~~a~~--~~~~~i 128 (169)
T cd01828 67 DEDIVANYRTILEKLRKH--FPNIKIVVQSILPVG------ELK-----S---IPNEQIEELNRQLAQLAQQ--EGVTFL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEecCCcC------ccC-----c---CCHHHHHHHHHHHHHHHHH--CCCEEE
Confidence 367888888888776443 235679999888865 100 0 0001223567777776663 578899
Q ss_pred ecCCcc
Q 028107 159 HVTPMG 164 (213)
Q Consensus 159 diT~ls 164 (213)
|+....
T Consensus 129 d~~~~~ 134 (169)
T cd01828 129 DLWAVF 134 (169)
T ss_pred echhhh
Confidence 987654
No 7
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=83.10 E-value=6.1 Score=31.16 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++++++-+.+. ..+++|++-+..|.... +. .. .........++++++++.++. .+.++
T Consensus 70 ~~~~~~~~~~l~~~~~~~--~p~~~vi~~~~~p~~~~------~~-~~----~~~~~~~~~~n~~l~~~a~~~--~~~~i 134 (174)
T cd01841 70 SNQFIKWYRDIIEQIREE--FPNTKIYLLSVLPVLEE------DE-IK----TRSNTRIQRLNDAIKELAPEL--GVTFI 134 (174)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEEEeeCCcCcc------cc-cc----cCCHHHHHHHHHHHHHHHHHC--CCEEE
Confidence 356777777777665432 23567999898887621 10 00 000112345667777766554 48899
Q ss_pred ecCCcc---------cCCCCC-CCCC
Q 028107 159 HVTPMG---------AFRGDA-HVGS 174 (213)
Q Consensus 159 diT~ls---------~~R~Dg-Hps~ 174 (213)
|+..+. .+-+|| ||+.
T Consensus 135 d~~~~~~~~~~~~~~~~~~DglH~n~ 160 (174)
T cd01841 135 DLNDVLVDEFGNLKKEYTTDGLHFNP 160 (174)
T ss_pred EcHHHHcCCCCCccccccCCCcccCH
Confidence 988764 344677 7753
No 8
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=81.57 E-value=13 Score=29.22 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++++++-+.+.. .++++++-+..|.- . . . .. ......+++++++..++ ...+.++
T Consensus 69 ~~~~~~~~~~lv~~i~~~~--~~~~iil~~~~p~~-~------~--~--~~----~~~~~~~n~~~~~~a~~-~~~v~~v 130 (171)
T cd04502 69 PEEVLRDFRELVNRIRAKL--PDTPIAIISIKPSP-A------R--W--AL----RPKIRRFNALLKELAET-RPNLTYI 130 (171)
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCcEEEEEecCCC-c------c--h--hh----HHHHHHHHHHHHHHHhc-CCCeEEE
Confidence 4667778887777664432 24567777765532 0 0 0 00 00122455555555432 3478999
Q ss_pred ecCCcc----------cCCCCC-CCCC
Q 028107 159 HVTPMG----------AFRGDA-HVGS 174 (213)
Q Consensus 159 diT~ls----------~~R~Dg-Hps~ 174 (213)
|+.... .+.+|| ||+.
T Consensus 131 D~~~~~~~~~~~~~~~~~~~DGlH~n~ 157 (171)
T cd04502 131 DVASPMLDADGKPRAELFQEDGLHLND 157 (171)
T ss_pred ECcHHHhCCCCCcChhhcCCCCCCCCH
Confidence 988642 246776 8764
No 9
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.34 E-value=7.2 Score=31.25 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++++++-+.+. ...++||+-+..|..-.. .. ..++..........++++++++.++. ..+.++
T Consensus 86 ~~~~~~~l~~li~~i~~~--~~~~~iiv~~~p~~~~~~----~~---~~~~~~~~~~~~~~~n~~~~~~a~~~-~~~~~i 155 (191)
T cd01836 86 IARWRKQLAELVDALRAK--FPGARVVVTAVPPLGRFP----AL---PQPLRWLLGRRARLLNRALERLASEA-PRVTLL 155 (191)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCEEEEECCCCcccCC----CC---cHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEE
Confidence 456777777777666442 135678888876644100 00 00000000001123445555554432 479999
Q ss_pred ecCCcc---cCCCCC-CCCC
Q 028107 159 HVTPMG---AFRGDA-HVGS 174 (213)
Q Consensus 159 diT~ls---~~R~Dg-Hps~ 174 (213)
|+.... .+-.|| ||+.
T Consensus 156 d~~~~~~~~~~~~DglHpn~ 175 (191)
T cd01836 156 PATGPLFPALFASDGFHPSA 175 (191)
T ss_pred ecCCccchhhccCCCCCCCh
Confidence 999874 556676 8864
No 10
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.61 E-value=33 Score=27.21 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++.+++.+.+. ..+.++++.|..|...... . +.... .....+++.++++.++ ..+.++
T Consensus 88 ~~~~~~~l~~li~~i~~~--~~~~~iil~t~~p~~~~~~---~------~~~~~--~~~~~~~~~~~~~a~~--~~~~~v 152 (188)
T cd01827 88 KDDFKKDYETMIDSFQAL--PSKPKIYICYPIPAYYGDG---G------FINDN--IIKKEIQPMIDKIAKK--LNLKLI 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEeCCcccccCC---C------ccchH--HHHHHHHHHHHHHHHH--cCCcEE
Confidence 467888888888776432 2355788888777542110 0 10000 0012344555555444 467888
Q ss_pred ecCCccc----CCCCC-CCCC
Q 028107 159 HVTPMGA----FRGDA-HVGS 174 (213)
Q Consensus 159 diT~ls~----~R~Dg-Hps~ 174 (213)
|+...+. +=+|+ ||+.
T Consensus 153 D~~~~~~~~~~~~~Dg~Hpn~ 173 (188)
T cd01827 153 DLHTPLKGKPELVPDWVHPNE 173 (188)
T ss_pred EccccccCCccccCCCCCcCH
Confidence 9876543 34588 8874
No 11
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=67.08 E-value=23 Score=28.14 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeeeccc
Q 028107 81 AFKAALNTWASWVDTSINTNRTSVFFRTFEAS 112 (213)
Q Consensus 81 A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~ 112 (213)
.|+..++.+++.+.+.. .++.+++-+..|.
T Consensus 75 ~~~~~~~~~i~~i~~~~--p~~~iil~~~~~~ 104 (177)
T cd01844 75 MVRERLGPLVKGLRETH--PDTPILLVSPRYC 104 (177)
T ss_pred HHHHHHHHHHHHHHHHC--cCCCEEEEecCCC
Confidence 57777777777775432 2567888776554
No 12
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.82 E-value=18 Score=29.07 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCcEEEEecccccccceeeccceeeecCCeecc-CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCC
Q 028107 42 DTDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKL-GMPTTTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRN 120 (213)
Q Consensus 42 ~~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~-~~~~~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg 120 (213)
..|++|++.|..=..... .+ +..... .-...++|+..++.+++.+.+ .+.+|++-+..|.+-.
T Consensus 59 ~pd~vii~~G~ND~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~lv~~~~~----~~~~vili~~pp~~~~----- 122 (200)
T cd01829 59 KPDVVVVFLGANDRQDIR--DG-----DGYLKFGSPEWEEEYRQRIDELLNVARA----KGVPVIWVGLPAMRSP----- 122 (200)
T ss_pred CCCEEEEEecCCCCcccc--CC-----CceeecCChhHHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCCCh-----
Confidence 579999999876321100 00 000000 012357888888888766532 3567888888776510
Q ss_pred ccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCcc
Q 028107 121 SCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVLHVTPMG 164 (213)
Q Consensus 121 ~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdiT~ls 164 (213)
.+. ....+++++++++.++. .+.++|++.+.
T Consensus 123 ~~~-----------~~~~~~~~~~~~~a~~~--~~~~id~~~~~ 153 (200)
T cd01829 123 KLS-----------ADMVYLNSLYREEVAKA--GGEFVDVWDGF 153 (200)
T ss_pred hHh-----------HHHHHHHHHHHHHHHHc--CCEEEEhhHhh
Confidence 010 11234667777776654 48999998764
No 13
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=61.33 E-value=65 Score=23.88 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCcEEEEecccccccceeeccceeeecCCeeccCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCc
Q 028107 42 DTDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKLGMPTTTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNS 121 (213)
Q Consensus 42 ~~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~~~~~~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~ 121 (213)
..|++|+..|..-.-... ......+...++..++.+.+ .....+|++=+..|..-
T Consensus 65 ~~d~vil~~G~ND~~~~~----------------~~~~~~~~~~~~~~i~~~~~--~~~~~~vv~~~~~~~~~------- 119 (187)
T cd00229 65 KPDLVIIELGTNDLGRGG----------------DTSIDEFKANLEELLDALRE--RAPGAKVILITPPPPPP------- 119 (187)
T ss_pred CCCEEEEEeccccccccc----------------ccCHHHHHHHHHHHHHHHHH--HCCCCcEEEEeCCCCCC-------
Confidence 568888887764321100 01234555555555554432 23455676666655441
Q ss_pred cccccccCCCCCCCCcchHHHHHHHHHHhcC--CceEEEecCCcccCC
Q 028107 122 CKVSRHPSLDTKGKDRSSISDTIIDVVKKTA--APVTVLHVTPMGAFR 167 (213)
Q Consensus 122 C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~--~~v~lLdiT~ls~~R 167 (213)
+.. ........+++.+++..+..+ ..+.++|+.......
T Consensus 120 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 160 (187)
T cd00229 120 REG-------LLGRALPRYNEAIKAVAAENPAPSGVDLVDLAALLGDE 160 (187)
T ss_pred Cch-------hhHHHHHHHHHHHHHHHHHcCCCcceEEEEhhhhhCCC
Confidence 100 000011234455555555433 258999999876543
No 14
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=60.68 E-value=41 Score=27.11 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccc-cccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEAS-HWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTV 157 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~-Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~l 157 (213)
.+.|+..|+++++-+.+ .+..+++-|..|. .|. .+.+ .......++++++++.++. .+.+
T Consensus 89 ~~~~~~nl~~ii~~~~~----~~~~~il~tp~~~~~~~-----~~~~--------~~~~~~~~~~~~~~~a~~~--~~~~ 149 (198)
T cd01821 89 YTTYKEYLRRYIAEARA----KGATPILVTPVTRRTFD-----EGGK--------VEDTLGDYPAAMRELAAEE--GVPL 149 (198)
T ss_pred HHHHHHHHHHHHHHHHH----CCCeEEEECCccccccC-----CCCc--------ccccchhHHHHHHHHHHHh--CCCE
Confidence 46788888888766533 2456676554442 111 0100 0112345677778777764 4667
Q ss_pred EecCCc
Q 028107 158 LHVTPM 163 (213)
Q Consensus 158 LdiT~l 163 (213)
+|+..+
T Consensus 150 vD~~~~ 155 (198)
T cd01821 150 IDLNAA 155 (198)
T ss_pred EecHHH
Confidence 887665
No 15
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=56.77 E-value=39 Score=26.68 Aligned_cols=72 Identities=10% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|.+.++++++.+.+ ....+++-+..|.--. ..+ |-..........++++++++.++. .+.++
T Consensus 78 ~~~~~~~~~~li~~~~~----~~~~~il~~~~p~~~~----~~~-----~~~~~~~~~~~~~n~~~~~~a~~~--~v~~v 142 (183)
T cd04501 78 LEMIKDNIRSMVELAEA----NGIKVILASPLPVDDY----PWK-----PQWLRPANKLKSLNRWLKDYAREN--GLLFL 142 (183)
T ss_pred HHHHHHHHHHHHHHHHH----CCCcEEEEeCCCcCcc----ccc-----hhhcchHHHHHHHHHHHHHHHHHc--CCCEE
Confidence 45678888888877633 2446777776663200 000 000000012234566666666553 58899
Q ss_pred ecCCccc
Q 028107 159 HVTPMGA 165 (213)
Q Consensus 159 diT~ls~ 165 (213)
|+.....
T Consensus 143 d~~~~~~ 149 (183)
T cd04501 143 DFYSPLL 149 (183)
T ss_pred echhhhh
Confidence 9888643
No 16
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=56.61 E-value=19 Score=28.46 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++.+++-+.+. ..+++|++-|..|..... ....|.... +...........+++++++..++. .+.++
T Consensus 87 ~~~~~~~~~~~i~~~~~~--~~~~~ii~~t~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~--~~~~i 160 (199)
T cd01838 87 LDEYKENLRKIVSHLKSL--SPKTKVILITPPPVDEEA-WEKSLEDGG-SQPGRTNELLKQYAEACVEVAEEL--GVPVI 160 (199)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCeEEEeCCCCCCHHH-Hhhhhcccc-CCccccHHHHHHHHHHHHHHHHHh--CCcEE
Confidence 467888888887766432 135678888887754211 000110000 000000011223455555555543 58899
Q ss_pred ecCCccc
Q 028107 159 HVTPMGA 165 (213)
Q Consensus 159 diT~ls~ 165 (213)
|+...+.
T Consensus 161 D~~~~~~ 167 (199)
T cd01838 161 DLWTAMQ 167 (199)
T ss_pred EHHHHHH
Confidence 9876544
No 17
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=56.40 E-value=35 Score=27.54 Aligned_cols=81 Identities=7% Similarity=0.048 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeec-cccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFE-ASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTV 157 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~S-P~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~l 157 (213)
.+.|+..|+++++-+.+. . .+.+|++-++. |.- . .. |..........+++++++++.++ ...+.+
T Consensus 101 ~~~~~~~l~~~i~~ir~~-~-p~~~Ivv~~~~~p~~--~----~~-----~~~~~~~~~~~~~n~~~~~~a~~-~~~v~~ 166 (204)
T cd04506 101 EETYQNNLKKIFKEIRKL-N-PDAPIFLVGLYNPFY--V----YF-----PNITEINDIVNDWNEASQKLASQ-YKNAYF 166 (204)
T ss_pred HHHHHHHHHHHHHHHHHH-C-CCCeEEEEecCCccc--c----cc-----chHHHHHHHHHHHHHHHHHHHHh-CCCeEE
Confidence 467888899888777432 2 34566666542 311 0 00 10000000112455555555543 234999
Q ss_pred EecCCcccCC-------CCC-CCC
Q 028107 158 LHVTPMGAFR-------GDA-HVG 173 (213)
Q Consensus 158 LdiT~ls~~R-------~Dg-Hps 173 (213)
+|+..++.-. +|| ||+
T Consensus 167 vd~~~~~~~~~~~~~~~~Dg~Hpn 190 (204)
T cd04506 167 VPIFDLFSDGQNKYLLTSDHFHPN 190 (204)
T ss_pred EehHHhhcCCcccccccccCcCCC
Confidence 9998776544 466 775
No 18
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=52.03 E-value=39 Score=28.46 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCcccccc---ccCCCCCC----CCcchHHHHHHHHHHhc
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSR---HPSLDTKG----KDRSSISDTIIDVVKKT 151 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~---~P~~~~~~----~~~~~~~~i~~~~~~~~ 151 (213)
.+.|+..|+.+++-+.+ . ..+++|++-++.|-- . +.++.|.... .|+..... .....++++++++.++.
T Consensus 126 ~~~~~~~l~~~l~~i~~-~-~p~a~I~~~gyp~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~~ 201 (259)
T cd01823 126 LDEVGARLKAVLDRIRE-R-APNARVVVVGYPRLF-P-PDGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAADA 201 (259)
T ss_pred HHHHHHHHHHHHHHHHh-h-CCCcEEEEecccccc-c-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777665533 1 246789999875532 2 1223333211 01111000 01123455555555543
Q ss_pred C-CceEEEecCCcccCC
Q 028107 152 A-APVTVLHVTPMGAFR 167 (213)
Q Consensus 152 ~-~~v~lLdiT~ls~~R 167 (213)
+ .++.++|+.....-+
T Consensus 202 ~~~~v~fvD~~~~f~~~ 218 (259)
T cd01823 202 GDYKVRFVDTDAPFAGH 218 (259)
T ss_pred CCceEEEEECCCCcCCC
Confidence 3 459999998876544
No 19
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.05 E-value=38 Score=26.54 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..|+++++.+.+ ......|++-+.-|.- . ..+.. |...........++++++++.++ ..+.++
T Consensus 84 ~~~~~~~l~~~v~~~~~--~~~~~~ii~~~p~~~~--~---~~~~~---~~~~~~~~~~~~~n~~l~~~a~~--~~~~~i 151 (191)
T cd01834 84 LEKFKTNLRRLIDRLKN--KESAPRIVLVSPIAYE--A---NEDPL---PDGAEYNANLAAYADAVRELAAE--NGVAFV 151 (191)
T ss_pred HHHHHHHHHHHHHHHHc--ccCCCcEEEECCcccC--C---CCCCC---CChHHHHHHHHHHHHHHHHHHHH--cCCeEE
Confidence 46788888888776632 1234556665533321 1 01100 11000001122345555555544 468999
Q ss_pred ecCCcc
Q 028107 159 HVTPMG 164 (213)
Q Consensus 159 diT~ls 164 (213)
|+...+
T Consensus 152 D~~~~~ 157 (191)
T cd01834 152 DLFTPM 157 (191)
T ss_pred ecHHHH
Confidence 998765
No 20
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.62 E-value=1.1e+02 Score=23.90 Aligned_cols=73 Identities=7% Similarity=0.025 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++++++.+.+. ..+.+|++.+..|.-+... +.+... .....+.++.++++.++. .+.++
T Consensus 76 ~~~~~~~~~~li~~i~~~--~~~~~iv~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~a~~~--~v~~v 141 (189)
T cd01825 76 ASEYRQQLREFIKRLRQI--LPNASILLVGPPDSLQKTG--AGRWRT--------PPGLDAVIAAQRRVAKEE--GIAFW 141 (189)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEcCCchhccCC--CCCccc--------CCcHHHHHHHHHHHHHHc--CCeEE
Confidence 467888888888777432 2367889888776532111 111110 112334566667776654 48899
Q ss_pred ecCCccc
Q 028107 159 HVTPMGA 165 (213)
Q Consensus 159 diT~ls~ 165 (213)
|+...+.
T Consensus 142 d~~~~~~ 148 (189)
T cd01825 142 DLYAAMG 148 (189)
T ss_pred eHHHHhC
Confidence 9987654
No 21
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=45.46 E-value=73 Score=26.16 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|...++.+++-+.+.. .++.|++-+..|..-. ..++. .....+++.+++..++ ..++.++
T Consensus 108 ~~~~~~~l~~ii~~l~~~~--P~~~Iil~~~~p~~~~----------~~~~~----~~~~~~n~~l~~~~~~-~~~v~~v 170 (214)
T cd01820 108 AEEIAEGILAIVEEIREKL--PNAKILLLGLLPRGQN----------PNPLR----ERNAQVNRLLAVRYDG-LPNVTFL 170 (214)
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCeEEEEeccCCCCC----------chhHH----HHHHHHHHHHHHHhcC-CCCEEEE
Confidence 3456667777776654321 3467888887775410 00110 0112334444333322 3479999
Q ss_pred ecCCccc---------CCCCC-CCCC
Q 028107 159 HVTPMGA---------FRGDA-HVGS 174 (213)
Q Consensus 159 diT~ls~---------~R~Dg-Hps~ 174 (213)
|+..... +-.|| ||+.
T Consensus 171 d~~~~~~~~~g~~~~~~~~DGlHpn~ 196 (214)
T cd01820 171 DIDKGFVQSDGTISHHDMPDYLHLTA 196 (214)
T ss_pred eCchhhcccCCCcCHhhcCCCCCCCH
Confidence 9987642 22477 8864
No 22
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=44.50 E-value=17 Score=29.72 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCCcccccCCCcchHHHHHHHHHHH
Q 028107 181 VPDCSHWCLPGVPDMWNEILFSYLL 205 (213)
Q Consensus 181 ~~DC~HWCLPGv~DtWNelL~~~L~ 205 (213)
.++|...||||||..-..||-+.+.
T Consensus 140 ~~~~~i~~lPG~P~e~~~m~~~~~~ 164 (170)
T cd00885 140 HNGKNVFLLPGVPSEMKPMLEEEVL 164 (170)
T ss_pred eCCeEEEEECCChHHHHHHHHHHHH
Confidence 3579999999999998888876543
No 23
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=44.41 E-value=1.5e+02 Score=23.12 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcC-CceEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTA-APVTV 157 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~-~~v~l 157 (213)
...|+.+++.+++-+.+. . .++++|+-+..+.. . +. . ..++.+.+.+++++.+ .++.+
T Consensus 76 ~~~~~~~~~~li~~i~~~-~-p~~~i~~~~~~~~~--~-----------~~----~--~~~~~~~~~~~~~~~~~~~v~~ 134 (169)
T cd01831 76 GEDFTNAYVEFIEELRKR-Y-PDAPIVLMLGPMLF--G-----------PY----G--TEEEIKRVAEAFKDQKSKKVHY 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHH-C-CCCeEEEEecCccc--c-----------cc----c--cHHHHHHHHHHHHhcCCceEEE
Confidence 456777777776655432 2 34556664422211 0 00 0 0234455566555432 57999
Q ss_pred EecCCcc--cCCCCC-CCCC
Q 028107 158 LHVTPMG--AFRGDA-HVGS 174 (213)
Q Consensus 158 LdiT~ls--~~R~Dg-Hps~ 174 (213)
+|..... .+-+|+ ||+.
T Consensus 135 id~~~~~~~~~~~DgiHPn~ 154 (169)
T cd01831 135 FDTPGILQHNDIGCDWHPTV 154 (169)
T ss_pred EecccccCCCCcCCCCCCCH
Confidence 9987643 234566 7763
No 24
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.19 E-value=66 Score=26.07 Aligned_cols=86 Identities=7% Similarity=0.071 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCCceEEEeeeccccccC-CCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCc
Q 028107 79 TTAFKAALNTWASWVDTSIN---TNRTSVFFRTFEASHWSG-RNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAP 154 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~---~~~~~vffRt~SP~Hf~g-~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~ 154 (213)
.+.|+..++++++-+.+... ...++|++-+..|- ... .....+.. .......+++++++++.++. .
T Consensus 100 ~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~--~ 169 (208)
T cd01839 100 AAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPI-RTPKGSLAGKFA-------GAEEKSKGLADAYRALAEEL--G 169 (208)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCcc-Cccccchhhhhc-------cHHHHHHHHHHHHHHHHHHh--C
Confidence 36788888887776644221 13566777766553 000 00000000 00001234566666666654 5
Q ss_pred eEEEecCCcc-cCCCCC-CCCC
Q 028107 155 VTVLHVTPMG-AFRGDA-HVGS 174 (213)
Q Consensus 155 v~lLdiT~ls-~~R~Dg-Hps~ 174 (213)
+.++|+..+. .+-+|| ||+.
T Consensus 170 ~~~iD~~~~~~~~~~DGvH~~~ 191 (208)
T cd01839 170 CHFFDAGSVGSTSPVDGVHLDA 191 (208)
T ss_pred CCEEcHHHHhccCCCCccCcCH
Confidence 7889986643 344677 8764
No 25
>PRK03670 competence damage-inducible protein A; Provisional
Probab=43.51 E-value=17 Score=31.76 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCcccccCCCcchHHHHHHHHHH
Q 028107 182 PDCSHWCLPGVPDMWNEILFSYL 204 (213)
Q Consensus 182 ~DC~HWCLPGv~DtWNelL~~~L 204 (213)
+.|.+.||||||-....||-..+
T Consensus 150 ~~~~v~~lPGvP~e~~~M~~~~v 172 (252)
T PRK03670 150 KGTKIFVLPGMPREMKAMLEKEV 172 (252)
T ss_pred CCeEEEEeCCChHHHHHHHHHHH
Confidence 56899999999999999987744
No 26
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.19 E-value=1.1e+02 Score=24.41 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..++.+++.+. .++.|++-+..|.- . ...|.. .....++++.++++.++ ..+.++
T Consensus 94 ~~~~~~~~~~ii~~~~-----~~~~vi~~~~~p~~--~--------~~~~~~---~~~~~~~n~~~~~~a~~--~~~~~v 153 (193)
T cd01835 94 ARAFLFGLNQLLEEAK-----RLVPVLVVGPTPVD--E--------AKMPYS---NRRIARLETAFAEVCLR--RDVPFL 153 (193)
T ss_pred HHHHHHHHHHHHHHHh-----cCCcEEEEeCCCcc--c--------cccchh---hHHHHHHHHHHHHHHHH--cCCCeE
Confidence 4688888888876553 24567777765532 0 000110 01123456666666654 367899
Q ss_pred ecCCcc
Q 028107 159 HVTPMG 164 (213)
Q Consensus 159 diT~ls 164 (213)
|+....
T Consensus 154 d~~~~~ 159 (193)
T cd01835 154 DTFTPL 159 (193)
T ss_pred eCccch
Confidence 987643
No 27
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=36.14 E-value=44 Score=28.59 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHhc--CCceEEEecCCcccCCC-CCCCCC
Q 028107 146 DVVKKT--AAPVTVLHVTPMGAFRG-DAHVGS 174 (213)
Q Consensus 146 ~~~~~~--~~~v~lLdiT~ls~~R~-DgHps~ 174 (213)
+.+++. ..||+++||+.|+.+++ +.||-.
T Consensus 55 ~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhg 86 (203)
T PF09363_consen 55 SLLREHFPELKIRVVNVVDLMKLQPPSEHPHG 86 (203)
T ss_dssp HHHHHT--T--EEEEEESBGGGGS-TTT-TTS
T ss_pred HHHHHhccCceEEEEEEeEccccCCCCCCCCc
Confidence 345554 68999999999999976 558853
No 28
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.04 E-value=38 Score=30.78 Aligned_cols=37 Identities=11% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCCceEEEeeecccccc
Q 028107 79 TTAFKAAL-NTWASWVDTSINTNRTSVFFRTFEASHWS 115 (213)
Q Consensus 79 ~~A~~~al-~t~~~wv~~~~~~~~~~vffRt~SP~Hf~ 115 (213)
.++.+.+. ..++.|+..-+||.|+.+|+.|--|.|.+
T Consensus 58 ~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~e 95 (314)
T COG0180 58 EEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAE 95 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHH
Confidence 36677664 46788888889999999999999999954
No 29
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.46 E-value=2.1e+02 Score=23.08 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeecccc
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASH 113 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~H 113 (213)
.+.|+..|+++++.+.+ ...+|++-|..|..
T Consensus 101 ~~~~~~~l~~ii~~~~~----~~~~vil~t~~P~~ 131 (204)
T cd01830 101 AEELIAGYRQLIRRAHA----RGIKVIGATITPFE 131 (204)
T ss_pred HHHHHHHHHHHHHHHHH----CCCeEEEecCCCCC
Confidence 46788888888776643 24678888888865
No 30
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=28.69 E-value=1.3e+02 Score=22.27 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCcEEEEecccccccceeeccceeeecCCeeccCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 028107 41 TDTDVLIFNSGHWWTRTKLFEMGCYFQVGGSLKLGMPTTTAFKAALNTWASWVDTSINTNRTSVFFR 107 (213)
Q Consensus 41 ~~~DvlV~ntGhWw~~~~~~~~g~~~~~~~~~~~~~~~~~A~~~al~t~~~wv~~~~~~~~~~vffR 107 (213)
..||++|+|| |.+ ...|=+++++.+.++...+ ..+.+|++-
T Consensus 35 e~AD~iiiNT-------------C~V-----------~~~Ae~k~~~~i~~l~~~~--~~~~~ivv~ 75 (98)
T PF00919_consen 35 EEADVIIINT-------------CTV-----------RESAEQKSRNRIRKLKKLK--KPGAKIVVT 75 (98)
T ss_pred ccCCEEEEEc-------------CCC-----------CcHHHHHHHHHHHHHHHhc--CCCCEEEEE
Confidence 5789999999 532 1356677777777766443 234455554
No 31
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=28.38 E-value=1.4e+02 Score=22.40 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 028107 78 TTTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTV 157 (213)
Q Consensus 78 ~~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~l 157 (213)
..+.|+.+|+++++.+. + .+.|++-++.|..... +..+ ..........++++++++.++. .+.+
T Consensus 83 ~~~~~~~~l~~~i~~~~----~-~~~vi~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~a~~~--~~~~ 146 (179)
T PF13472_consen 83 SPEQYEQNLRRIIEQLR----P-HGPVILVSPPPRGPDP--RDPK-------QDYLNRRIDRYNQAIRELAKKY--GVPF 146 (179)
T ss_dssp HHHHHHHHHHHHHHHHH----T-TSEEEEEE-SCSSSST--TTTH-------TTCHHHHHHHHHHHHHHHHHHC--TEEE
T ss_pred cHHHHHHHHHHHHHhhc----c-cCcEEEecCCCccccc--cccc-------chhhhhhHHHHHHHHHHHHHHc--CCEE
Confidence 35678888888776552 2 2378888888776221 1111 0000011234566666666543 8999
Q ss_pred EecCCcccCCCCCCCCCCCCCCCCCCccccc
Q 028107 158 LHVTPMGAFRGDAHVGSWSDNPSVPDCSHWC 188 (213)
Q Consensus 158 LdiT~ls~~R~DgHps~y~~~~~~~DC~HWC 188 (213)
+|+.....- .+ . +.......|.+|..
T Consensus 147 id~~~~~~~-~~---~-~~~~~~~~D~~Hp~ 172 (179)
T PF13472_consen 147 IDLFDAFDD-HD---G-WFPKYYFSDGVHPN 172 (179)
T ss_dssp EEHHHHHBT-TT---S-CBHTCTBTTSSSBB
T ss_pred EECHHHHcc-cc---c-cchhhcCCCCCCcC
Confidence 999988552 11 1 11111247888864
No 32
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=23.89 E-value=1.8e+02 Score=20.39 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCceEEE
Q 028107 77 PTTTAFKAALNTWASWVDTSINTNRTSVFF 106 (213)
Q Consensus 77 ~~~~A~~~al~t~~~wv~~~~~~~~~~vff 106 (213)
+.-...++.|+.+++||.+.....+.++|+
T Consensus 47 DYH~vlk~~L~~l~~~i~~~~~~~~~r~~V 76 (78)
T PF08331_consen 47 DYHKVLKKKLEQLAEWIRELGPDFEYRIFV 76 (78)
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCeEEee
Confidence 567889999999999998776445566654
No 33
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=22.68 E-value=39 Score=27.19 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.6
Q ss_pred CcchHHHHHHHH
Q 028107 191 GVPDMWNEILFS 202 (213)
Q Consensus 191 Gv~DtWNelL~~ 202 (213)
-|||.||+||-+
T Consensus 126 ~pPddW~~Ll~~ 137 (140)
T PF11663_consen 126 NPPDDWDALLKE 137 (140)
T ss_pred CCCccHHHHHHH
Confidence 368999999864
No 34
>PRK03673 hypothetical protein; Provisional
Probab=21.69 E-value=65 Score=30.17 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.2
Q ss_pred CCcccccCCCcchHHHHHHHHH
Q 028107 182 PDCSHWCLPGVPDMWNEILFSY 203 (213)
Q Consensus 182 ~DC~HWCLPGv~DtWNelL~~~ 203 (213)
++|..+||||||-.-..|+-+.
T Consensus 143 ~~~~i~~LPGvP~Emk~M~~~~ 164 (396)
T PRK03673 143 NRCLMFFTPGVPSEFKVMVEQE 164 (396)
T ss_pred CCEEEEEECCChHHHHHHHHHH
Confidence 6799999999999887777553
No 35
>PRK00549 competence damage-inducible protein A; Provisional
Probab=21.43 E-value=67 Score=30.08 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.9
Q ss_pred CCcccccCCCcchHHHHHHHH
Q 028107 182 PDCSHWCLPGVPDMWNEILFS 202 (213)
Q Consensus 182 ~DC~HWCLPGv~DtWNelL~~ 202 (213)
+.|..+||||||-.-..||-.
T Consensus 142 ~~~~i~~lPGvP~Em~~m~~~ 162 (414)
T PRK00549 142 DGKTYIVLPGPPSELKPMFEE 162 (414)
T ss_pred CCEEEEEeCCCcHHHHHHHHH
Confidence 679999999999987777755
Done!