Query 028107
Match_columns 213
No_of_seqs 134 out of 722
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 10:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o14a2 c.23.10.8 (A:160-367) 53.9 15 0.0011 26.3 6.4 69 79-164 92-160 (208)
2 d1k7ca_ c.23.10.4 (A:) Rhamnog 46.8 28 0.002 24.7 7.0 36 138-175 149-199 (233)
3 d2hsja1 c.23.10.3 (A:1-211) Un 46.2 18 0.0013 26.3 5.8 74 81-164 103-176 (211)
4 d3dc7a1 c.23.10.9 (A:18-224) U 42.2 42 0.0031 23.1 7.2 27 139-167 144-170 (207)
5 d2j49a1 d.379.1.1 (A:149-282) 24.5 4.7 0.00034 28.9 -1.2 33 81-113 3-60 (134)
6 d1fxwf_ c.23.10.3 (F:) Platele 23.9 49 0.0036 23.9 4.8 30 81-112 108-137 (212)
7 d1es9a_ c.23.10.3 (A:) Platele 22.0 88 0.0064 22.3 6.0 68 80-164 107-174 (212)
8 d1qk7a_ g.3.6.2 (A:) Lectin SH 18.1 14 0.001 19.7 0.2 7 186-192 24-31 (32)
9 d1itua_ c.1.9.7 (A:) Renal dip 16.4 1.1E+02 0.008 24.8 5.9 11 106-116 145-155 (369)
10 d2imja1 d.17.4.23 (A:5-159) Hy 12.8 29 0.0021 25.3 0.9 10 164-173 140-149 (155)
No 1
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=53.91 E-value=15 Score=26.26 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 028107 79 TTAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVL 158 (213)
Q Consensus 79 ~~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lL 158 (213)
.+.|+..|+++++-+.+ . ...+++-+. |.++.... . .. +. .....+++++++++.++. .+.++
T Consensus 92 ~~~~~~~l~~li~~~~~---~-~~~~vl~~~-~~~~~~~~---~--~~-~~----~~~~~~~~~~~~~~a~~~--~v~~v 154 (208)
T d2o14a2 92 EAEFKEVMRDMIRQVKA---K-GADVILSTP-QGRATDFT---S--EG-IH----SSVNRWYRASILALAEEE--KTYLI 154 (208)
T ss_dssp HHHHHHHHHHHHHHHHT---T-TCEEEEECC-CCCTTCBC---T--TS-CB----CCTTSTTHHHHHHHHHHT--TCEEE
T ss_pred HHHHHHHHHHHHHHHHh---c-CCceeeccc-cccccccc---c--cc-ch----HHHHHHHHHHHHHhhccC--CcEEe
Confidence 56788888888765532 2 233444332 22221100 0 00 00 112234667777777654 57789
Q ss_pred ecCCcc
Q 028107 159 HVTPMG 164 (213)
Q Consensus 159 diT~ls 164 (213)
|+..++
T Consensus 155 D~~~~~ 160 (208)
T d2o14a2 155 DLNVLS 160 (208)
T ss_dssp CHHHHH
T ss_pred ccHHHH
Confidence 986654
No 2
>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=46.77 E-value=28 Score=24.70 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHhcCCceEEEecCCcc--------------cCCCCC-CCCCC
Q 028107 138 SSISDTIIDVVKKTAAPVTVLHVTPMG--------------AFRGDA-HVGSW 175 (213)
Q Consensus 138 ~~~~~i~~~~~~~~~~~v~lLdiT~ls--------------~~R~Dg-Hps~y 175 (213)
..+++.++++.++. .+.++|+..++ .+.+|+ ||+..
T Consensus 149 ~~~~~~~~~~a~~~--~v~~iDl~~~~~~~~~~~~~~~~~~~~~~DgiHpn~~ 199 (233)
T d1k7ca_ 149 TRFVEYAELAAEVA--GVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPA 199 (233)
T ss_dssp CHHHHHHHHHHHHH--TCEEECHHHHHHHHHHHHCHHHHHHTCSSSSSCCCHH
T ss_pred HHHHHHHHHHHHHc--CCCeeeHHHHHHHHHHHcCchhhhhhcCCCCcCCCHH
Confidence 35667777776654 57888986654 266898 99854
No 3
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=46.23 E-value=18 Score=26.30 Aligned_cols=74 Identities=7% Similarity=-0.048 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 028107 81 AFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVLHV 160 (213)
Q Consensus 81 A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdi 160 (213)
.+...++.+++-+.+. ..++.|++-|..|.-. .+.....+.... .....++++.+++..++ ...+.++|+
T Consensus 103 ~~~~~~~~li~~i~~~--~p~~~i~v~~~~P~~~------~~~~~~~~~~~~-~~~i~~~n~~~~~~a~~-~~~v~~iD~ 172 (211)
T d2hsja1 103 EALNNLEAIIQSVARD--YPLTEIKLLSILPVNE------REEYQQAVYIRS-NEKIQNWNQAYQELASA-YMQVEFVPV 172 (211)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCEEEEECCCCCCC------SGGGHHHHTTCC-HHHHHHHHHHHHHHHTT-CTTEEEECC
T ss_pred HHHHhhhhhhhhhccc--cccceEEEeeecCCCc------ccccchhhhhhH-HHHHHHHHHHHHHHHHh-hCCeeEeeh
Confidence 3444455555444332 2356788888877541 111111000000 00012344444444332 357999999
Q ss_pred CCcc
Q 028107 161 TPMG 164 (213)
Q Consensus 161 T~ls 164 (213)
...+
T Consensus 173 ~~~~ 176 (211)
T d2hsja1 173 FDCL 176 (211)
T ss_dssp GGGS
T ss_pred hHHH
Confidence 7654
No 4
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]}
Probab=42.18 E-value=42 Score=23.14 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCCceEEEecCCcccCC
Q 028107 139 SISDTIIDVVKKTAAPVTVLHVTPMGAFR 167 (213)
Q Consensus 139 ~~~~i~~~~~~~~~~~v~lLdiT~ls~~R 167 (213)
.++++++++.++ ..+.++|+...+..+
T Consensus 144 ~~~~~~~~~a~~--~~~~~id~~~~~~~~ 170 (207)
T d3dc7a1 144 DYEAAIAQMTAD--YGVPHLSLYRDAGMT 170 (207)
T ss_dssp HHHHHHHHHHHH--HTCCEEEHHHHSSCC
T ss_pred HHHHHHHHHHHh--ceeeeeehhhhhhcc
Confidence 455666665554 357788876555433
No 5
>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=24.49 E-value=4.7 Score=28.94 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-------------------------ceEEEeeecccc
Q 028107 81 AFKAALNTWASWVDTSINTNR-------------------------TSVFFRTFEASH 113 (213)
Q Consensus 81 A~~~al~t~~~wv~~~~~~~~-------------------------~~vffRt~SP~H 113 (213)
.|+++...+.+||++++|..| ++-||+.+++.|
T Consensus 3 ~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~A~~F~~~f~~~~ 60 (134)
T d2j49a1 3 NYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFSPDF 60 (134)
T ss_dssp THHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhhHHH
Confidence 467777778888888888777 677999999988
No 6
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]}
Probab=23.90 E-value=49 Score=23.87 Aligned_cols=30 Identities=3% Similarity=0.134 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeeeccc
Q 028107 81 AFKAALNTWASWVDTSINTNRTSVFFRTFEAS 112 (213)
Q Consensus 81 A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~ 112 (213)
.+...++.+++.+.+. ..+++|++-+..|.
T Consensus 108 ~~~~~~~~~i~~i~~~--~p~~~Ii~~~~~P~ 137 (212)
T d1fxwf_ 108 EVAGGIEAIVQLINTR--QPQAKIIVLGLLPR 137 (212)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHH--hccccccceeeccc
Confidence 3445566666655433 23567888887664
No 7
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]}
Probab=22.00 E-value=88 Score=22.29 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeeeccccccCCCCCccccccccCCCCCCCCcchHHHHHHHHHHhcCCceEEEe
Q 028107 80 TAFKAALNTWASWVDTSINTNRTSVFFRTFEASHWSGRNRNSCKVSRHPSLDTKGKDRSSISDTIIDVVKKTAAPVTVLH 159 (213)
Q Consensus 80 ~A~~~al~t~~~wv~~~~~~~~~~vffRt~SP~Hf~g~~Gg~C~~~~~P~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLd 159 (213)
+-+...++++++-+.+. ..++.|++-+..|.=. ... +.. .....+++.+++.+++ ..++.++|
T Consensus 107 ~~~~~~~~~ii~~l~~~--~p~~~Ii~~~~~p~~~---------~~~-~~~----~~~~~~n~~~~~~~a~-~~~~~~id 169 (212)
T d1es9a_ 107 EQVTGGIKAIVQLVNER--QPQARVVVLGLLPRGQ---------HPN-PLR----EKNRRVNELVRAALAG-HPRAHFLD 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCEEEEECCCCCSS---------SCC-HHH----HHHHHHHHHHHHHHHS-CTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHh--hccccccceeeeeccc---------chh-hHH----HHHHHHHHHHHHHHhh-cCceeecc
Confidence 34445566666555332 2356788877666310 000 000 0012234444444432 46799999
Q ss_pred cCCcc
Q 028107 160 VTPMG 164 (213)
Q Consensus 160 iT~ls 164 (213)
+....
T Consensus 170 ~~~~~ 174 (212)
T d1es9a_ 170 ADPGF 174 (212)
T ss_dssp CCCCC
T ss_pred chHHH
Confidence 98754
No 8
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=18.12 E-value=14 Score=19.66 Aligned_cols=7 Identities=57% Similarity=1.683 Sum_probs=4.1
Q ss_pred ccc-CCCc
Q 028107 186 HWC-LPGV 192 (213)
Q Consensus 186 HWC-LPGv 192 (213)
.|| +|||
T Consensus 24 kwcv~~gp 31 (32)
T d1qk7a_ 24 KWCVLAGP 31 (32)
T ss_dssp CBEEECCC
T ss_pred eeeeccCC
Confidence 466 4665
No 9
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.43 E-value=1.1e+02 Score=24.82 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=7.2
Q ss_pred EeeeccccccC
Q 028107 106 FRTFEASHWSG 116 (213)
Q Consensus 106 fRt~SP~Hf~g 116 (213)
+|.++|+|+..
T Consensus 145 vR~i~Lt~n~~ 155 (369)
T d1itua_ 145 MRYLTLTHSCN 155 (369)
T ss_dssp EEEEESCSSSC
T ss_pred ceEEEeccCCC
Confidence 36777888554
No 10
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=12.85 E-value=29 Score=25.25 Aligned_cols=10 Identities=40% Similarity=0.375 Sum_probs=8.3
Q ss_pred ccCCCCCCCC
Q 028107 164 GAFRGDAHVG 173 (213)
Q Consensus 164 s~~R~DgHps 173 (213)
.--|||.|||
T Consensus 140 ~G~RPddhpg 149 (155)
T d2imja1 140 LGRRPDDHPG 149 (155)
T ss_dssp SSSCCTTSCC
T ss_pred CCCCCCCCCC
Confidence 3569999998
Done!