BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028108
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 289 bits (739), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/194 (79%), Positives = 180/194 (92%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 36 IRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGE 95
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
SVAIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALD
Sbjct: 96 SVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALD 155
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
S+D+EEE +E+VDKVL+ IAGETAA+LP AVRKER +VPAQ+ASTS++E+A+AEGVDDEE
Sbjct: 156 SEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEE 215
Query: 200 ELEELRARLDKVRS 213
ELEE+RARL KVRS
Sbjct: 216 ELEEIRARLAKVRS 229
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/192 (71%), Positives = 163/192 (84%)
Query: 22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
DI+REE+NV K+IK+S KRND+ +AKALA+EI+ SR+ V RLYENKAQ+NSISMHLGES+
Sbjct: 9 DIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESI 68
Query: 82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
A A TVG+LSKS EVMKLVN+LMKAPE+AVTMQ FSKEMTK G+IEE V+D +D ALDS+
Sbjct: 69 ATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSE 128
Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEEL 201
DIEEE EE+VDKVL+ IAGETAA+LPEAVRK++ VPAQ+A T E AI EGVD EEEL
Sbjct: 129 DIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEEL 188
Query: 202 EELRARLDKVRS 213
E +R RL VRS
Sbjct: 189 EAIRYRLANVRS 200
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 105/151 (69%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQRE++ V++SIKESAK+ + + LAKE++ S+KAVN+LY +KA +NS+ M +
Sbjct: 34 IRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + NL+K PE+ TM+E SKEM KAGIIEEM+ DT + D
Sbjct: 94 QLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMED 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
D++EE+ E ++D++L E+ + P V
Sbjct: 154 QDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 105/151 (69%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQRE++ V++SIKESAK+ + + LAKE++ S+KAVN+LY +KA +NS+ M +
Sbjct: 34 IRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + NL+K PE+ TM++ SKEM KAGIIEEM+ DT + D
Sbjct: 94 QLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMED 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
D++EE+ E ++D++L EI + P V
Sbjct: 154 QDEMEEQAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 103/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EE E ++D++L EI + P V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 104/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EEE E ++D++L EI + P V
Sbjct: 154 QEEMEEEAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 103/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EE E ++D++L EI + P V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 104/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EEE E ++D++L EI + P V
Sbjct: 154 QEEMEEEAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 103/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EE E ++D++L EI + P V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 103/151 (68%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ DIQREE+ V++S+K++AK+ LAKE++ SRKAV++LY +KA +NS+ M +
Sbjct: 34 IRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+A+ R G L KSTEVMK + +L+K PE+ TM+E SKEM KAGIIEEM+ DT ++ D
Sbjct: 94 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
+++EE E ++D++L EI + P V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 103/149 (69%)
Query: 22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
DIQREE+ V++SIK++AK+ LAKE++ S++A+N+LY +KAQ+NS+ + + +
Sbjct: 36 DIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQL 95
Query: 82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
++ R G L KSTEVMK + +L+K PE+ TM++ SKEM KAGIIEEM+ DT++ D +
Sbjct: 96 SVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEE 155
Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAV 170
++EE E +VDK+L EI + P V
Sbjct: 156 EMEEAAEAEVDKILFEITAGALGKAPSKV 184
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 18/186 (9%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
I +EK + IKE K D SAK LAKEI+ SRKA R+Y KAQ+NS+SM L ++A
Sbjct: 35 IDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLA 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ + G+L+KSTE+MK++N+L+K PE+ M EMTKAGI+EEM++D D + +D
Sbjct: 95 MTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD--MQGED 152
Query: 143 IEEETEEKVDKVLSEI--AGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEE 200
+EEE E +V+K++ EI +G + P T QQE+ + E +D E
Sbjct: 153 LEEEAEMEVNKIMDEILVSGPQVSSAP--------------LETHQQEEVVQEKQEDSEL 198
Query: 201 LEELRA 206
L+ L+A
Sbjct: 199 LDRLKA 204
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 111/182 (60%), Gaps = 12/182 (6%)
Query: 31 QKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHL 90
Q+ IK+SAK+ND+ + + AKE+ K +R+Y ++AQL+S+ M + E++ + +
Sbjct: 46 QQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQM 105
Query: 91 SKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD-SDDIEEETEE 149
+ S +M+ VN+L++ P++ TM E KE+ K+GII EMV+DT+++ D ++++E +E
Sbjct: 106 ADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDE 165
Query: 150 KVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIA-EGVDDEEE--LEELRA 206
+V+K++ + E + +VP + +++EQ I E VD+E + + E+R
Sbjct: 166 EVNKIVEQYTNEKFKNV--------DQVPTVELAANEEEQEIPDEKVDEEADRMVNEMRE 217
Query: 207 RL 208
RL
Sbjct: 218 RL 219
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 90/150 (60%), Gaps = 6/150 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMH---LGE 79
+Q +EK + IK+ AK+ M SAK +AK+++ +R + + YE K QL ++S+ L
Sbjct: 35 LQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQS 94
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
+ A+A + ++K+ M +N M P+ M EF ++ K + EEM+NDT+D ++
Sbjct: 95 TQAMAEAMKGVTKA---MITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVME 151
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEA 169
D EE+++E +++VL EI + A+QL +A
Sbjct: 152 QDGEEEQSQEILNQVLDEIGIDLASQLVDA 181
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++E+ ++ IK+ AK + + K LAK+++ RK NR Y +++ S+S +
Sbjct: 35 LEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D+ D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
EEE+++ V++VL EI E + ++ +A R +P+ ASTS+ A + DEE
Sbjct: 155 EEEESQDIVNQVLDEIGIEISGKMAKAPSAARG-LPS--ASTSK-----ASTISDEEIER 206
Query: 203 ELRA 206
+L+A
Sbjct: 207 QLKA 210
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 8/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + + LAK+++ RK R Y +++ S+S +
Sbjct: 35 LEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D+ D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
EEE+++ V++VL EI E + ++ +A + +P+ AS S G+ DEE
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAAKG-LPSTSASKS-------SGISDEEIER 206
Query: 203 ELRA 206
+L+A
Sbjct: 207 QLKA 210
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 8/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + K LAK+++ RK R Y +++ S+S +
Sbjct: 35 LEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D+ +
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASE 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
EEE+++ V++VL EI E + ++ +A + +P+ AS S G+ DEE
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAAKG-LPSASASKS-------TGISDEEIER 206
Query: 203 ELRA 206
+L+A
Sbjct: 207 QLKA 210
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + K LAK+++ RK R Y +++ S+S +
Sbjct: 35 LEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G ++ +T+ M+ VN M + T+Q F KE K + EEM+NDT+D +
Sbjct: 95 QMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSG 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQL---PEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
EEE+++ V++VL EI E + ++ P A RK S A+ A+G+ DE+
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAK-----------ADGISDED 203
Query: 200 ELEELRA 206
+L+A
Sbjct: 204 IERQLKA 210
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + + LAK+++ RK R Y +++ S+S +
Sbjct: 35 LEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + +EM+NDT+D D+ +
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASE 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
EEE+++ V++VL EI E + ++ +A + +P+ A+ S+ G+ DEE
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAAKG-LPSTSAAKSK-------GISDEEIER 206
Query: 203 ELRA 206
+L+A
Sbjct: 207 QLKA 210
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
+Q EEK + IK +AK + G+ K LA++++ R+ + L ++AQ+ I+ H A
Sbjct: 35 LQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHA 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ +T+ M ++ M + A M+EF K+ + + EM++D+ID ALD+D+
Sbjct: 95 HTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDE 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDD-EEEL 201
E+ETE+ ++VL EI + A+QL S P + + E + G+D+ E+ L
Sbjct: 155 AEDETEDLTNQVLDEIGIDIASQL--------SSAPKGKIGGKKAEDVGSSGIDELEKRL 206
Query: 202 EELR 205
LR
Sbjct: 207 AALR 210
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + K LAK+++ RK R + +++ S+S +
Sbjct: 35 LEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQ 186
EEE+++ V++VL EI E + ++ +A RS +P+ ASTS+
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAARS-LPS--ASTSK 195
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + K LAK+++ RK R + +++ S+S +
Sbjct: 35 LEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQ 186
EEE+++ V++VL EI E + ++ +A RS +P+ ASTS+
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAARS-LPS--ASTSK 195
>sp|O14296|VPS24_SCHPO Vacuolar protein sorting-associated protein 24
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps24 PE=3 SV=1
Length = 231
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 28 KNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV 87
K + +K+ AK++D+ + + LAKEI + + RL E+KA L S+S+ L + +A+ +
Sbjct: 43 KKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQ 102
Query: 88 GHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD---DIE 144
G + ST++M+ V++L++ P+++ TM+ S E+TKAG++EEM ++ D + D+
Sbjct: 103 GTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEEMRDEMFLPVEDDEELMDLA 162
Query: 145 EETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVD------DE 198
+E EE V ++L++ +P K + S Q +++ G+ DE
Sbjct: 163 DEDEE-VQEILTKYNV-----IPAPSEKAADAATHREQSLKQALPSLSNGIAKDSTEIDE 216
Query: 199 EELEELRARLDKVRS 213
E+L ++R +LD ++S
Sbjct: 217 EQLLDIRDKLDALKS 231
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + + LAK+++ RK R + +++ S+S +
Sbjct: 35 LEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
EEE+++ V++VL EI E + ++ +A RS +P+ ASTS+ + DEE
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAARS-LPS--ASTSK------STISDEEIER 205
Query: 203 ELRA 206
+L+A
Sbjct: 206 QLKA 209
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK ++ IK+ AK + + + LAK+++ RK R + +++ S+S +
Sbjct: 35 LEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNS 94
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ G +S + + M+ VN M + TMQ F KE K + EEM+NDT+D D D
Sbjct: 95 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD 154
Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQ 186
EEE+++ V++VL EI E + ++ +A RS +P+ ASTS+
Sbjct: 155 DEEESQDIVNQVLDEIGIEISGKMAKAPSAARS-LPS--ASTSK 195
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%)
Query: 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
+ +Q EEK + IK++AK + + K LA++++ R+ + L ++AQ+ ++ H
Sbjct: 32 ITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQA 91
Query: 80 SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
A + +T+ M +N M + A +++F K+ + + EM+++ ID LD
Sbjct: 92 LYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLD 151
Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEA 169
D+ EEETE+ ++VL EI A+QL A
Sbjct: 152 KDEAEEETEDLTNQVLDEIGVGVASQLSSA 181
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 109/194 (56%), Gaps = 11/194 (5%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
+Q +EK + IK++AK+ MG+ K +AK+++ +R + + Y+ K+QL +S+ + +++
Sbjct: 37 LQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLK 95
Query: 83 IARTVGHLSKS-TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
+ +G K T+ M +N M P + MQEF ++ K ++ E++ D ID AL+ D
Sbjct: 96 STQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGD 155
Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAE---GVDDE 198
+ EEETE+ V +VL EI + +L A + VPA + Q E AE G+D
Sbjct: 156 EEEEETEDLVSQVLDEIGIDINQELVNAPSGAVA-VPAAKNKVVQAEATGAEDSGGIDS- 213
Query: 199 EELEELRARLDKVR 212
+L+ARLD +R
Sbjct: 214 ----DLQARLDNLR 223
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 26 EEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR 85
++K + IK+SAK + +AK AK+++ +R + + KAQL +IS+ + + +
Sbjct: 42 QDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQ 101
Query: 86 TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEE 145
+S++T ++ +N M P++ EF K+ G +E +++ ID + + E+
Sbjct: 102 MTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDED 161
Query: 146 ETEEK-VDKVLSEIAGETAAQL 166
E ++ V+KVL EI + +QL
Sbjct: 162 EEADEIVNKVLDEIGVDLNSQL 183
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 76/137 (55%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK + IK+ AK+ M + K +AK+++ +R+ V + +A + ++S+ + +
Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKS 95
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
+ T+ M +N +K P++ M EF K+ + EEM+ND ID A+ +D
Sbjct: 96 NNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDED 155
Query: 143 IEEETEEKVDKVLSEIA 159
EEE++ V +VL E+
Sbjct: 156 DEEESDAVVSQVLDELG 172
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK + IK+ AK+ M + K +AK+++ +R+ V + +A + ++S+ + +
Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKS 95
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTI 134
+ T+ M +N +K P++ M EF K+ + EEM+ND I
Sbjct: 96 NNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAI 147
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%)
Query: 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
++++EK + IK+ AK+ M + K +AK+++ +R+ V + +A + ++S+ + +
Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKS 95
Query: 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTI 134
+ T+ M +N +K P++ M EF ++ + EEM+ND I
Sbjct: 96 NNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAI 147
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 26 EEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR 85
+EK + IK+ AK+ M + + +AK+++ +R+ V + +A + ++S+ + +
Sbjct: 39 QEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNS 98
Query: 86 TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTI 134
+ T+ M +N +K P++ M EF ++ + EEM+ND I
Sbjct: 99 MAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAI 147
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 26 EEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR 85
+EK + IK+ AK+ M + + +AK+++ +R+ V + +A + ++S+ + +
Sbjct: 39 QEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNS 98
Query: 86 TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTI 134
+ T+ M +N +K P++ M EF ++ + EEM+ND I
Sbjct: 99 MAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAI 147
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 24 QREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAI 83
QRE +Q+ IK SAK + G+A+ A++++ R + ++ K QL +IS+ L
Sbjct: 41 QRERALIQE-IKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTS 99
Query: 84 ARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDI 143
+ + + +T ++ +N M P +A Q+F +E +EM+++ +D A +D
Sbjct: 100 EQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDA-LEEDD 158
Query: 144 EEETEEKVDKVLSEIAGETAAQLPEAV 170
EEE +E V+KVL EI + + LP+A
Sbjct: 159 EEEADELVNKVLDEIGVDLSQGLPDAA 185
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 16/130 (12%)
Query: 38 AKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHL-----GESVAIARTVGHLSK 92
AK+ M + K +AK+++ +R+ V + +A + ++S+ + S+A+A +
Sbjct: 51 AKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKG 105
Query: 93 STEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGII---EEMVNDTIDTALDSDDIEEETEE 149
T+ M +N +K P++ M EF K+ AGI+ EE++ND ID A+ +D EEE++
Sbjct: 106 VTKAMATMNRQLKLPQIQKIMMEFEKQ---AGIMDMKEELMNDAIDDAMGDEDDEEESDA 162
Query: 150 KVDKVLSEIA 159
V +VL E+
Sbjct: 163 VVSQVLDELG 172
>sp|Q9MTH5|YCF1_OENEH Putative membrane protein ycf1 OS=Oenothera elata subsp. hookeri
GN=ycf1 PE=3 SV=3
Length = 2463
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 113 MQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRK 172
+QEF + + ++ + +++ D D+ + + E+K ++ +E + L EA R+
Sbjct: 367 LQEFKQGVVESYLAKQVAKDANQIQAQKDEKQIQAEQKARRIRAEQVVQYTFWLIEAQRR 426
Query: 173 E------RSRVPAQRASTSQQEQAIAEGVDDEEE 200
E R+ A + + QE + EGV +++E
Sbjct: 427 EMEIEAARAMQEAYKGMLAAQEGYVEEGVQEKQE 460
>sp|Q9PJF7|GP6R_CHLMU Virulence plasmid protein pGP6-D-related protein OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=TC_0872 PE=3 SV=1
Length = 262
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 145 EETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIA 192
E T+EK + ++ GET +L E +RKE +P R T ++A
Sbjct: 160 EGTQEKKEAIIRNYQGETKGELLEIIRKEFPLLPTDRRHTPLSQKAFT 207
>sp|Q5UQ88|UBC3_MIMIV Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1
Length = 1441
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 93 STEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIE---EMVNDTIDTALDSDDIEEETEE 149
+ E+++LV + V ++QE ++E + +E E+ +++ +EE +E
Sbjct: 425 TEELIQLVADEPVQETVKDSVQEVAEESVQETTVEAVQEIAEESVQQV-----VEESVQE 479
Query: 150 KVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEE 203
+ + E+A E Q+ E +E + P Q + +Q +AE +E EE
Sbjct: 480 TTVEPVQEVAEEAVQQVVEESVQETTVEPVQEVAEEPVQQEVAEEPVQQEVAEE 533
>sp|B2UTX2|HSLU_HELPS ATP-dependent protease ATPase subunit HslU OS=Helicobacter pylori
(strain Shi470) GN=hslU PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 94 TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTA--LDSDDIEEETEEKV 151
TE+ + + +MK P V V ++++ +E MV D ++ + L ++ +E+ ++K+
Sbjct: 66 TEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
Query: 152 DK-VLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
++ V+ +IA + LP V +E+ + A S + +Q I +G D E+E
Sbjct: 126 EEAVIEKIAKKLLPPLPNGVSEEKKQEYAN--SLLKMQQRIVQGELDSREIE 175
>sp|Q9ZLW1|HSLU_HELPJ ATP-dependent protease ATPase subunit HslU OS=Helicobacter pylori
(strain J99) GN=hslU PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 94 TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTA--LDSDDIEEETEEKV 151
TE+ + + +MK P V V ++++ +E MV D ++ + L ++ +E ++K+
Sbjct: 66 TEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKERLKDKI 125
Query: 152 DK-VLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
++ V+ +IA + LP V +E+ + A S + +Q IA+G D E+E
Sbjct: 126 EEAVVEKIAKKLLPPLPSGVSEEKKQEYAN--SLLKMQQRIAQGELDSREIE 175
>sp|B5Z6N9|HSLU_HELPG ATP-dependent protease ATPase subunit HslU OS=Helicobacter pylori
(strain G27) GN=hslU PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 94 TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTA--LDSDDIEEETEEKV 151
TE+ + + +M+ P V V ++++ +E MV D ++ + L ++ +E+ ++K+
Sbjct: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
Query: 152 DK-VLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
++ V+ +IA + LP V +E+ + A S + +Q IA+G D E+E
Sbjct: 126 EEAVIEKIAKKLLPPLPNGVSEEKKQEYAN--SLLKMQQRIAQGELDNREIE 175
>sp|B6JL98|HSLU_HELP2 ATP-dependent protease ATPase subunit HslU OS=Helicobacter pylori
(strain P12) GN=hslU PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 94 TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTA--LDSDDIEEETEEKV 151
TE+ + + +M+ P V V ++++ +E MV D ++ + L ++ +E+ ++K+
Sbjct: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
Query: 152 DK-VLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
++ V+ +IA + LP V +E+ + A S + +Q IA+G D E+E
Sbjct: 126 EEAVIEKIAKKLLPPLPSGVSEEKKQEYAN--SLLKMQQRIAQGELDSREIE 175
>sp|O25254|HSLU_HELPY ATP-dependent protease ATPase subunit HslU OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=hslU PE=3 SV=1
Length = 443
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 94 TEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTA--LDSDDIEEETEEKV 151
TE+ + + +M+ P V V ++++ +E MV D ++ + L ++ +E+ ++K+
Sbjct: 66 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 125
Query: 152 DK-VLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELE 202
++ V+ +IA + LP V +E+ + A S + +Q IA+G D E+E
Sbjct: 126 EEAVIEKIAKKLLPPLPNGVSEEKKQEYAN--SLLKMQQRIAQGELDSREIE 175
>sp|Q7U3D7|PPK_SYNPX Polyphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ppk
PE=3 SV=1
Length = 712
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 101 NNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLS--EI 158
++LM A E + + E+ + + +M D ++ ++ +EEE ++D L ++
Sbjct: 250 DDLMLALEQGLRKRRMGGEVVRLEVPNDMPEDVVEMLMNGLAVEEEDLYRIDGPLGLDDL 309
Query: 159 AGETAAQLPEAVRKERS-RVPAQRASTSQQEQAIAEGVDDEEELEEL 204
G A LP+ K+ S + P A T Q+ I EG EE E +
Sbjct: 310 FGLMALPLPKLKDKQHSGQTPTVLART--QQHLIDEGAIKPEEFESI 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,236,039
Number of Sequences: 539616
Number of extensions: 2400768
Number of successful extensions: 16253
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 496
Number of HSP's that attempted gapping in prelim test: 15829
Number of HSP's gapped (non-prelim): 869
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)