Query 028108
Match_columns 213
No_of_seqs 117 out of 621
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 8.4E-53 1.8E-57 346.7 22.4 208 2-212 3-222 (224)
2 KOG3229 Vacuolar sorting prote 100.0 2.4E-47 5.2E-52 316.5 23.1 206 8-213 22-227 (227)
3 KOG3231 Predicted assembly/vac 100.0 1.2E-41 2.7E-46 274.6 20.2 195 2-213 3-208 (208)
4 KOG3232 Vacuolar assembly/sort 100.0 4.5E-40 9.8E-45 266.9 21.9 185 13-213 18-202 (203)
5 PF03357 Snf7: Snf7; InterPro 99.9 5E-24 1.1E-28 172.8 10.8 163 8-172 5-169 (171)
6 COG5491 VPS24 Conserved protei 99.7 2.6E-15 5.6E-20 126.6 16.3 189 16-213 5-201 (204)
7 PTZ00464 SNF-7-like protein; P 99.5 1.1E-11 2.3E-16 105.6 18.9 169 2-172 4-191 (211)
8 PTZ00446 vacuolar sorting prot 99.3 1.4E-09 3E-14 91.2 19.6 146 1-154 3-173 (191)
9 KOG1656 Protein involved in gl 99.2 3.8E-09 8.3E-14 88.6 19.2 151 21-171 35-193 (221)
10 COG5491 VPS24 Conserved protei 98.7 1.4E-06 2.9E-11 73.9 16.5 141 23-166 5-152 (204)
11 KOG2910 Uncharacterized conser 98.7 1.2E-05 2.7E-10 67.1 21.0 149 13-172 25-177 (209)
12 KOG2911 Uncharacterized conser 98.2 0.00015 3.3E-09 67.2 18.7 143 13-161 242-385 (439)
13 KOG1655 Protein involved in va 98.1 0.00083 1.8E-08 56.5 18.1 141 15-159 30-175 (218)
14 PTZ00464 SNF-7-like protein; P 97.5 0.038 8.2E-07 47.3 19.5 86 8-93 22-117 (211)
15 KOG3229 Vacuolar sorting prote 97.0 0.18 3.8E-06 43.1 18.5 164 2-172 3-183 (227)
16 PF03357 Snf7: Snf7; InterPro 97.0 0.004 8.7E-08 50.1 7.8 149 11-166 1-157 (171)
17 PRK10698 phage shock protein P 96.3 0.63 1.4E-05 40.0 17.2 110 13-122 54-174 (222)
18 KOG3230 Vacuolar assembly/sort 95.5 0.88 1.9E-05 38.6 14.1 116 45-168 67-183 (224)
19 KOG3231 Predicted assembly/vac 93.9 2.6 5.7E-05 35.0 12.8 92 73-168 91-182 (208)
20 KOG3232 Vacuolar assembly/sort 93.7 3.7 8E-05 34.3 15.0 118 52-172 64-182 (203)
21 TIGR02977 phageshock_pspA phag 93.6 4.1 9E-05 34.6 17.1 109 14-122 55-174 (219)
22 PF03398 Ist1: Regulator of Vp 93.4 1.9 4.2E-05 35.3 11.4 139 20-161 15-164 (165)
23 PF04012 PspA_IM30: PspA/IM30 93.1 4.7 0.0001 34.0 18.1 54 12-65 52-105 (221)
24 PTZ00446 vacuolar sorting prot 87.2 17 0.00037 30.7 19.0 86 16-103 25-119 (191)
25 COG1937 Uncharacterized protei 84.0 14 0.0003 27.4 8.7 76 56-152 8-83 (89)
26 KOG2910 Uncharacterized conser 82.5 30 0.00064 29.4 16.5 118 2-135 4-130 (209)
27 COG1842 PspA Phage shock prote 72.4 63 0.0014 27.9 17.5 109 11-122 52-174 (225)
28 PF02583 Trns_repr_metal: Meta 70.2 39 0.00084 24.5 9.9 64 56-140 4-67 (85)
29 PRK15039 transcriptional repre 65.8 52 0.0011 24.4 8.8 47 56-102 8-54 (90)
30 PRK11352 regulator protein Frm 65.7 53 0.0011 24.3 9.3 47 56-102 8-54 (91)
31 KOG1656 Protein involved in gl 64.8 92 0.002 26.8 18.7 146 2-154 7-169 (221)
32 PF04521 Viral_P18: ssRNA posi 53.9 34 0.00074 26.8 5.0 41 11-51 72-112 (120)
33 PF09424 YqeY: Yqey-like prote 48.2 1.4E+02 0.003 23.8 10.2 36 118-161 75-110 (143)
34 COG3750 Uncharacterized protei 46.1 1.2E+02 0.0025 22.2 6.8 51 8-59 11-63 (85)
35 COG3783 CybC Soluble cytochrom 41.2 47 0.001 25.1 3.9 31 32-62 67-97 (100)
36 PRK05431 seryl-tRNA synthetase 39.0 3.3E+02 0.0072 25.5 10.1 63 11-79 35-98 (425)
37 PF07361 Cytochrom_B562: Cytoc 37.0 85 0.0018 23.6 4.8 34 31-64 69-102 (103)
38 PRK09720 cybC cytochrome b562; 36.2 75 0.0016 24.2 4.3 30 35-64 70-99 (100)
39 PF02416 MttA_Hcf106: mttA/Hcf 32.6 81 0.0017 20.9 3.6 34 2-36 16-49 (53)
40 PF13655 RVT_N: N-terminal dom 32.0 1.7E+02 0.0038 21.2 5.6 35 22-56 8-42 (84)
41 PF04977 DivIC: Septum formati 31.1 1.7E+02 0.0037 19.8 6.3 42 8-51 21-62 (80)
42 TIGR03752 conj_TIGR03752 integ 30.3 5.1E+02 0.011 25.0 10.1 33 7-39 62-94 (472)
43 PF02403 Seryl_tRNA_N: Seryl-t 29.4 2.3E+02 0.005 20.8 9.7 63 11-79 36-99 (108)
44 TIGR00414 serS seryl-tRNA synt 28.3 5E+02 0.011 24.3 10.2 64 12-79 38-101 (418)
45 PF10211 Ax_dynein_light: Axon 27.1 3.7E+02 0.0079 22.3 9.9 28 13-40 122-149 (189)
46 KOG2911 Uncharacterized conser 27.1 5.6E+02 0.012 24.5 14.0 88 13-103 235-325 (439)
47 PRK09343 prefoldin subunit bet 26.8 1.4E+02 0.0031 23.0 4.6 39 6-44 80-118 (121)
48 PRK14857 tatA twin arginine tr 26.2 1.4E+02 0.003 22.2 4.3 40 2-42 21-60 (90)
49 PRK00575 tatA twin arginine tr 25.0 63 0.0014 24.2 2.2 39 1-40 18-56 (92)
50 PF10475 DUF2450: Protein of u 24.1 4.9E+02 0.011 22.8 15.6 66 74-143 131-197 (291)
51 PRK05892 nucleoside diphosphat 23.6 3.9E+02 0.0086 21.5 8.3 64 8-80 8-73 (158)
52 PF06248 Zw10: Centromere/kine 23.1 7E+02 0.015 24.2 13.8 92 15-106 11-121 (593)
53 PRK15058 cytochrome b562; Prov 22.4 1.8E+02 0.0039 23.0 4.5 31 34-64 97-127 (128)
54 PF14257 DUF4349: Domain of un 22.4 5E+02 0.011 22.2 9.2 53 9-64 130-182 (262)
55 PF06120 Phage_HK97_TLTM: Tail 22.2 5.9E+02 0.013 23.0 13.1 26 10-35 80-105 (301)
56 PRK14861 tatA twin arginine tr 21.7 1.8E+02 0.0039 19.9 3.9 33 2-35 20-52 (61)
57 PF14712 Snapin_Pallidin: Snap 20.6 3.2E+02 0.007 19.4 9.0 68 10-79 13-82 (92)
58 PLN03086 PRLI-interacting fact 20.2 7.9E+02 0.017 24.3 9.3 66 16-87 5-70 (567)
59 PF10498 IFT57: Intra-flagella 20.0 7E+02 0.015 23.0 12.7 31 103-133 327-357 (359)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-53 Score=346.66 Aligned_cols=208 Identities=30% Similarity=0.431 Sum_probs=179.5
Q ss_pred chhhhhhhhHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 2 IFYAKKIHTGLLL-----------LLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQL 70 (213)
Q Consensus 2 ~~~~~~~~~~~~r-----------~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L 70 (213)
|||+|+.+.+.+| .|+|+..+++-+||++..+||+.||+|+++++||+||+|||+|+|+.+|+.++++|
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi 82 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI 82 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7898887766654 67888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHH
Q 028108 71 NSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEK 150 (213)
Q Consensus 71 ~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~ 150 (213)
.+|++++||.++...++.+|+++|+.|..||+.||+|+++++|++|++|++.||+.+|||+|++|++++++++|||+|++
T Consensus 83 qaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~l 162 (224)
T KOG3230|consen 83 QAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDL 162 (224)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcchhhhcCchhhhhhccccccccc-cchhHHhhhhccCCChHhHHHHHHHHHhhh
Q 028108 151 VDKVLSEIAGETAAQLPEAVRKERSRVPAQRA-STSQQEQAIAEGVDDEEELEELRARLDKVR 212 (213)
Q Consensus 151 v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr 212 (213)
|+|||||||++++++|.++|.. ..+.|+... -.+++..+..+. ..+.+ |+|++||++||
T Consensus 163 vnqVLDEiGvdl~~qL~~~P~~-~~~~~~a~~ig~~~a~~~gs~~-~~~~d-ddLqaRL~~Lr 222 (224)
T KOG3230|consen 163 VNQVLDEIGVDLASQLSSLPSA-AGSLPIAKTIGGKKAEAAGSEF-HSDAD-DDLQARLDNLR 222 (224)
T ss_pred HHHHHHHHcccHHHHhccCccc-ccccchhhccCCcccccccccc-CCCch-hHHHHHHHHHh
Confidence 9999999999999999998884 233332210 111011111111 12233 89999999998
No 2
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-47 Score=316.52 Aligned_cols=206 Identities=56% Similarity=0.747 Sum_probs=185.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV 87 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~ 87 (213)
.+|+.-|.|+|+++.|+++|++.+..||++||+||.++||+|||++|+.|+++.|+|..||||+||+++|..+.+|..++
T Consensus 22 kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~ 101 (227)
T KOG3229|consen 22 KIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVA 101 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHH
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCc
Q 028108 88 GHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLP 167 (213)
Q Consensus 88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp 167 (213)
|+|.+||.+|+.||++|.+|+|+.||++|++|++++||++||++|+|+++.|.++++|++|++|++||.+|..+..+++|
T Consensus 102 G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p 181 (227)
T KOG3229|consen 102 GSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAP 181 (227)
T ss_pred hhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108 168 EAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 168 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~ 213 (213)
.+|......+|.....+...+.+++++.++++++.+|+.||++|||
T Consensus 182 ~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 182 LAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred cchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 9888754455543222222334555565567789999999999997
No 3
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-41 Score=274.61 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=172.1
Q ss_pred chhhhhhhhHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 2 IFYAKKIHTGLLLL-----------LLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQL 70 (213)
Q Consensus 2 ~~~~~~~~~~~~r~-----------l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L 70 (213)
||+|| .+.+++|+ |+|.-++++++|++|+.+||+.|+.||.++||+|||+||..|||..|-|.+++++
T Consensus 3 iF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki 81 (208)
T KOG3231|consen 3 IFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKI 81 (208)
T ss_pred cccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 67665 66666655 4455556777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHH
Q 028108 71 NSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEK 150 (213)
Q Consensus 71 ~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~ 150 (213)
.+++.|-..+.++.+++++|+.+++.|+.||+.|+++++..+|++|++.+++|+|.+|||+|++|+.+|..+++||.+.+
T Consensus 82 ~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~ai 161 (208)
T KOG3231|consen 82 TSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAI 161 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcchhhhcCchhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108 151 VDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 151 v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~ 213 (213)
|+||||||||++++++.++|+..+ .|. .+. + ....+|+.+.|++||+
T Consensus 162 VNqVLDEIGIEisgKma~~P~a~s--~~~--~st---------~---kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 162 VNQVLDEIGIEISGKMAKAPSARS--LPS--AST---------S---KATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHhhhhhcchhccCCccCC--CCc--ccc---------C---CCcHHHHHHHHHHhcC
Confidence 999999999999999999997421 111 110 0 1234789999999996
No 4
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-40 Score=266.88 Aligned_cols=185 Identities=15% Similarity=0.255 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSK 92 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~ 92 (213)
.++|.|+.++|+++||..+.++|+|+++||++.|||||.+.||.+++.-+|+++.+++++|.+|+||+.+|.+++++|.+
T Consensus 18 sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~g 97 (203)
T KOG3232|consen 18 SKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAG 97 (203)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCchhhhh
Q 028108 93 STEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRK 172 (213)
Q Consensus 93 s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~~p~~ 172 (213)
+++.|....+.|||++|+.+|+.|++||+.+++..++|+++|++++....|++++|.++.+|+||+|++++..||+-..+
T Consensus 98 VvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~ 177 (203)
T KOG3232|consen 98 VVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVP 177 (203)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999974221
Q ss_pred hccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108 173 ERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~ 213 (213)
.+.++ +.+..+++ |+|.+||++||+
T Consensus 178 -a~~~~--------------t~~~~~e~-d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 178 -AISVK--------------TSAVVDEE-DDLTQRLAALRA 202 (203)
T ss_pred -CcCCC--------------Cccccchh-hHHHHHHHHHhc
Confidence 11111 11112344 899999999995
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.91 E-value=5e-24 Score=172.83 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=132.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV 87 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~ 87 (213)
-.+.+.+.|++++.+|+.+.+++..+||+++++|+...|++|++..++.+++..+++.+..+|++|..+++++..+..+.
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~ 84 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVV 84 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchh--hhc
Q 028108 88 GHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGET--AAQ 165 (213)
Q Consensus 88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~--~~~ 165 (213)
.+|+.++++|+.+|+.++++++..+|++|..+++.++.++++|++.++.. ++.++++.+++++++++|++.+. ...
T Consensus 85 ~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~ 162 (171)
T PF03357_consen 85 KALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQ 162 (171)
T ss_dssp SS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999998754 23456788999999999999988 889
Q ss_pred Cchhhhh
Q 028108 166 LPEAVRK 172 (213)
Q Consensus 166 lp~~p~~ 172 (213)
||++|++
T Consensus 163 lp~~P~~ 169 (171)
T PF03357_consen 163 LPSVPST 169 (171)
T ss_dssp SS---HH
T ss_pred CCcCCCC
Confidence 9999986
No 6
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.67 E-value=2.6e-15 Score=126.57 Aligned_cols=189 Identities=22% Similarity=0.231 Sum_probs=122.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 16 LLCCVLDIQREEKNVQKSIKESAKRN--DMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKS 93 (213)
Q Consensus 16 l~R~i~~l~~eEkkl~~~IKkaakkg--~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s 93 (213)
++|++.++-++.|...+....+.++- +....++|++.+++.|++..|+...+++|+++...+.....|..+.+-
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~---- 80 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGD---- 80 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 44555554444444443333333222 556688999999998888888887777777777766666666655555
Q ss_pred HHHHHHHHhhCC-hHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhccC--CCChhHHHHHHHHHHHHHHcchhhhcCc
Q 028108 94 TEVMKLVNNLMK-APEVAVTMQEFSKEMTKAGIIE---EMVNDTIDTALD--SDDIEEETEEKVDKVLSEIAGETAAQLP 167 (213)
Q Consensus 94 ~~~M~~~n~~m~-l~~l~~~M~~f~ke~~~~~~~~---emm~d~~d~~~~--~~~~eee~d~~v~kVldE~g~~~~~~lp 167 (213)
|..++..|| ++.|.++|+.|+.++.-++... |+|.+.++..++ ..++.+++|++|++|++|+|+++.....
T Consensus 81 ---~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 81 ---MAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 455566666 8899999999999998899998 788777776664 4457789999999999999999884444
Q ss_pred hhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108 168 EAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 168 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~ 213 (213)
++|...-.+.+.++...|++..+..+. +....+.|++||..|++
T Consensus 158 ~~~~~~~~~~~~~a~~~~ea~~ileea--~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVSPEARKILEEA--EKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccChhhhhhHHHH--HhhHHHHHHHHHHhccc
Confidence 333310001111222222222222211 12234899999999874
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.46 E-value=1.1e-11 Score=105.58 Aligned_cols=169 Identities=12% Similarity=0.122 Sum_probs=120.4
Q ss_pred chhhhh-----hhhHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHcCC---hhhHHHHHHHHHHHHHHHH----HHHHH
Q 028108 2 IFYAKK-----IHTGLLLLLLCCVLDIQREEKNVQKS---IKESAKRND---MGSAKALAKEILMSRKAVN----RLYEN 66 (213)
Q Consensus 2 ~~~~~~-----~~~~~~r~l~R~i~~l~~eEkkl~~~---IKkaakkg~---~~~arilAkelvr~Rk~~~----~l~~~ 66 (213)
|||+++ ..+..+..|......+++..+++..+ .|+.++++. ....|.-|..++|.||... +++..
T Consensus 4 lFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q 83 (211)
T PTZ00464 4 LFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQ 83 (211)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788765 44445555555555555555554443 233333221 1235888999999888544 57888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHH
Q 028108 67 KAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEE 146 (213)
Q Consensus 67 ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee 146 (213)
..+|..+...+.++.....+..+|+.++++|+.+|+.|++.+|..+|.++.-+++..+=+++++...+... ++.+|+|
T Consensus 84 ~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdE 161 (211)
T PTZ00464 84 QFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999988888888755311 1234556
Q ss_pred HHHHHHHHHHHHcc----hhhhcCchhhhh
Q 028108 147 TEEKVDKVLSEIAG----ETAAQLPEAVRK 172 (213)
Q Consensus 147 ~d~~v~kVldE~g~----~~~~~lp~~p~~ 172 (213)
.+++++.+..|... ...+..|++|+.
T Consensus 162 Le~ELe~Le~e~~~e~~~~~l~~~~~~p~~ 191 (211)
T PTZ00464 162 MLGELDALDFDMEKEADASYLADALAVPGT 191 (211)
T ss_pred HHHHHHHHHHHHhccccchhhhccccCCCC
Confidence 66666666666533 223456777775
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.26 E-value=1.4e-09 Score=91.25 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=107.2
Q ss_pred Cchhhhhh--------------hhHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHcCChhhHHHHHHHHHHHHHH
Q 028108 1 MIFYAKKI--------------HTGLLLLLLCCVLDIQREEKNVQKSI-------KESAKRNDMGSAKALAKEILMSRKA 59 (213)
Q Consensus 1 ~~~~~~~~--------------~~~~~r~l~R~i~~l~~eEkkl~~~I-------Kkaakkg~~~~arilAkelvr~Rk~ 59 (213)
++|||+|. +.+.|-.|-.++..|++.++.|..+| |+.+++|+.. -|..+.|.||.
T Consensus 3 ~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrKK~ 78 (191)
T PTZ00446 3 FWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRKKL 78 (191)
T ss_pred cccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHH
Confidence 47888763 55677777777777777776666655 4455666643 36777777665
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 60 V----NRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 60 ~----~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
. .+++....+|+.+...+..+.....+..+|+.++++|+.+|+.|++.++..+|.++.-+++..+=+++++...+.
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~ 158 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4 445555666666777788999999999999999999999999999999999999999999998888888875432
Q ss_pred hccCCCChhHHHHHHHHHH
Q 028108 136 TALDSDDIEEETEEKVDKV 154 (213)
Q Consensus 136 ~~~~~~~~eee~d~~v~kV 154 (213)
+.. +|+|.+++++..
T Consensus 159 ~~~----DEdELe~ELe~L 173 (191)
T PTZ00446 159 NNV----DDDEIDKELDLL 173 (191)
T ss_pred CCC----CHHHHHHHHHHH
Confidence 222 344445544443
No 9
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.8e-09 Score=88.60 Aligned_cols=151 Identities=16% Similarity=0.250 Sum_probs=109.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 028108 21 LDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMH---LGESVAIARTVGHLSKSTEVM 97 (213)
Q Consensus 21 ~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~---lqt~~s~~~~~~sm~~s~~~M 97 (213)
.+=+--++++..++...|++.-+..-|.--..|-|+|.+-..|...-..|..+..| |..+.+...+..+|+..+++|
T Consensus 35 KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~Am 114 (221)
T KOG1656|consen 35 KKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAM 114 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 33344577888888887887777766665556666666667776666666666666 677888889999999999999
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCCCChhHHHHHHHHHHHHHHcchhhh---cCchhhh
Q 028108 98 KLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID--TALDSDDIEEETEEKVDKVLSEIAGETAA---QLPEAVR 171 (213)
Q Consensus 98 ~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d--~~~~~~~~eee~d~~v~kVldE~g~~~~~---~lp~~p~ 171 (213)
+.+.+.||..++..+|++...|.+.+.-+.+.|+.=+. ..+|+++...|-|++=+..||.--+++.. .||++|+
T Consensus 115 K~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 115 KAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred HHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 99999999999999999999999999888888887653 22554444455555555555544443332 4555554
No 10
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.70 E-value=1.4e-06 Score=73.92 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVN--RLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLV 100 (213)
Q Consensus 23 l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~--~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~ 100 (213)
++++-++....+|...++|.....++-.+.-.+.|.... ++..++++|+.+.+||++..++-....+|..+ =+.+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v---~~~~ 81 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQV---SGDM 81 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH
Confidence 788889999999999999988665555566666666655 99999999999999999999888887766655 3333
Q ss_pred HhhCChHHHHHHHHHHHHHHHHhhhHHHHHh---hhhhhccCCCC--hhHHHHHHHHHHHHHHcchhhhcC
Q 028108 101 NNLMKAPEVAVTMQEFSKEMTKAGIIEEMVN---DTIDTALDSDD--IEEETEEKVDKVLSEIAGETAAQL 166 (213)
Q Consensus 101 n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~---d~~d~~~~~~~--~eee~d~~v~kVldE~g~~~~~~l 166 (213)
-+..-+-.=-..+..+.+.++.+-..=|.+. ++++..++... +..+.++.++..+..+-=+++-.|
T Consensus 82 ~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel 152 (204)
T COG5491 82 AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLEL 152 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhh
Confidence 3321111111334466777888777777777 66665555544 333444555555555544444333
No 11
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=98.68 E-value=1.2e-05 Score=67.09 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHH
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRL-YENKAQLNSISMHLGES---VAIARTVG 88 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l-~~~ka~L~sV~~~lqt~---~s~~~~~~ 88 (213)
.++|-+..++++......+...|++++.|..+.|+.+ ++.+++...| -+..-||..|.-.+++. .-..+++.
T Consensus 25 Rdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlll----LKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~ 100 (209)
T KOG2910|consen 25 RDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLL----LKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVME 100 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666677888888888776654 4455554444 34556676666555543 33447889
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCch
Q 028108 89 HLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPE 168 (213)
Q Consensus 89 sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~ 168 (213)
.++.-+.+++.+|+.|++..+.++|++-....+-.+-+++|+.+.|.. ++++++.++++-+..|.-.+ .++|.
T Consensus 101 gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~~~e--~e~Pe 173 (209)
T KOG2910|consen 101 GLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESELEVE--AELPE 173 (209)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHhhhh--hhcCC
Confidence 999999999999999999999999999999999999999999998873 34556777777776666554 67899
Q ss_pred hhhh
Q 028108 169 AVRK 172 (213)
Q Consensus 169 ~p~~ 172 (213)
+|+.
T Consensus 174 vPs~ 177 (209)
T KOG2910|consen 174 VPST 177 (209)
T ss_pred CCCC
Confidence 9886
No 12
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00015 Score=67.25 Aligned_cols=143 Identities=12% Similarity=0.152 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSK 92 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~ 92 (213)
.-.|.|++..|+++=++...+.+.+.|.|...-|..|.+..-+.-|...+.....-+|.+|-.++.++.+..-+-.+++.
T Consensus 242 ~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks 321 (439)
T KOG2911|consen 242 RAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS 321 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcch
Q 028108 93 STEVMKLVNN-LMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGE 161 (213)
Q Consensus 93 s~~~M~~~n~-~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~ 161 (213)
.+.+|+..+. -..+.++..+|.+..--+....- ++++|.+..-.. .+..|+.+.+=|+++-.|
T Consensus 322 Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~E----V~~~la~~~~~~--~d~~de~lEkEL~~L~~D 385 (439)
T KOG2911|consen 322 GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEE----VEDALASYNVNN--IDFEDEDLEKELEDLEAD 385 (439)
T ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHH----HHHHHhcCCCCC--CccchHHHHHHHHHHHhc
Confidence 9999999999 45667799999998877776444 455555433221 112344445555555433
No 13
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00083 Score=56.53 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=104.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 15 LLLCCVLDIQREEKNVQKSIKESAKRND-MGSAKALAKEILMSRKAV----NRLYENKAQLNSISMHLGESVAIARTVGH 89 (213)
Q Consensus 15 ~l~R~i~~l~~eEkkl~~~IKkaakkg~-~~~arilAkelvr~Rk~~----~~l~~~ka~L~sV~~~lqt~~s~~~~~~s 89 (213)
.++.-|.+|+.+=-+++.+|++. .-|. ..+.|--|=.+++.||.. ..|+.-+=.|+.+.+-.++...+...+.+
T Consensus 30 Sve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~A 108 (218)
T KOG1655|consen 30 SVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAA 108 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888877 4444 456676666666666543 33444555566777777777888888899
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHc
Q 028108 90 LSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIA 159 (213)
Q Consensus 90 m~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g 159 (213)
|+..++.|+..-+.+|..+|...=+++.-=++..+-++|.+.-....- +.++++.+.+++-..+|.-
T Consensus 109 mK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---eide~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 109 MKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---DIDEADLDAELDALGQELD 175 (218)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CcCHHHHHHHHHHHHhHhh
Confidence 999999999999999999999888888777888888888888776543 2345566777777766653
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.49 E-value=0.038 Score=47.30 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKES---AKRND-------MGSAKALAKEILMSRKAVNRLYENKAQLNSISMHL 77 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKka---akkg~-------~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~l 77 (213)
-.++.+..|++.|.+|+.+..+.+..|++. ++.+. ...-|.|=+++-+..++..++-.....|+......
T Consensus 22 ~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~ 101 (211)
T PTZ00464 22 RIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTK 101 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665555555554322 11111 11234555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 028108 78 GESVAIARTVGHLSKS 93 (213)
Q Consensus 78 qt~~s~~~~~~sm~~s 93 (213)
.+..+|..-+.+|+..
T Consensus 102 ~vv~amk~g~kaLK~~ 117 (211)
T PTZ00464 102 VQVDAMKQAAKTLKKQ 117 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666655
No 15
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.18 Score=43.08 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=89.8
Q ss_pred chhh--hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---
Q 028108 2 IFYA--KKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAK--EILMSRKAVNRLYENKAQLNSIS--- 74 (213)
Q Consensus 2 ~~~~--~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAk--elvr~Rk~~~~l~~~ka~L~sV~--- 74 (213)
+|++ ++-+..++|.+.+-||+=.|.=.+....|+..=++- ....|-.|| ++.-.|-..+-+++.+-+++-+-
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv-~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sK 81 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKV-QKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESK 81 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6777 778888888887777764443333333332221111 112222332 33444444555666655554332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH---------HHHHHHHHhhhHHHHHhhhhhhccCCCChhH
Q 028108 75 MHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQ---------EFSKEMTKAGIIEEMVNDTIDTALDSDDIEE 145 (213)
Q Consensus 75 ~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~---------~f~ke~~~~~~~~emm~d~~d~~~~~~~~ee 145 (213)
.+|. .+.-.|+..-.+..-.+.+=+-.++-+.|+ .--++|.+==++..+|++++|++++.-++.+
T Consensus 82 Aqln------Sv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~e 155 (227)
T KOG3229|consen 82 AQLN------SVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSE 155 (227)
T ss_pred HHHh------hHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 2333 233333333333333333222222222222 2234555555777899999999999888888
Q ss_pred HHHHHHHHHHHHHcchh-hhcCchhhhh
Q 028108 146 ETEEKVDKVLSEIAGET-AAQLPEAVRK 172 (213)
Q Consensus 146 e~d~~v~kVldE~g~~~-~~~lp~~p~~ 172 (213)
+-++.++.-.|.|--.+ +..+|.+|..
T Consensus 156 emeEe~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 156 EMEEEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred hHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 89999999999997654 4557777775
No 16
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=96.97 E-value=0.004 Score=50.06 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKES---AKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV 87 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKka---akkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~ 87 (213)
+.+..|...++.|+++.+++..+|++. +++--...-+..|+.+.+.++...+.+ .++.....+|.+.......+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~---~~~~~~~~~l~~~~~~ie~a 77 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQL---EKLLNQLSNLESVLLQIETA 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998864 444445566788888888887765544 46677778888888888888
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHH-----HHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchh
Q 028108 88 GHLSKSTEVMKLVNNLMKAPEVAVTMQ-----EFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGET 162 (213)
Q Consensus 88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~-----~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~ 162 (213)
.....++.+|...++. +.++.+.|. ++-.++...--..+.++++|.+.+ ....+..|++++..|+++.-+.
T Consensus 78 ~~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~ 153 (171)
T PF03357_consen 78 QSNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEI 153 (171)
T ss_dssp HHHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHH
Confidence 8888888888888877 555554443 222222222222222333333210 1114556678888888887766
Q ss_pred hhcC
Q 028108 163 AAQL 166 (213)
Q Consensus 163 ~~~l 166 (213)
....
T Consensus 154 ~~~~ 157 (171)
T PF03357_consen 154 EEEE 157 (171)
T ss_dssp CTTS
T ss_pred hhhh
Confidence 5554
No 17
>PRK10698 phage shock protein PspA; Provisional
Probab=96.28 E-value=0.63 Score=39.98 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKA-------LAKEILMSRKAVNRLYE----NKAQLNSISMHLGESV 81 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~ari-------lAkelvr~Rk~~~~l~~----~ka~L~sV~~~lqt~~ 81 (213)
-+.+.|++..++..-.+...+-..|+.+|+-+-||- |+..+...+.+....-. ++.++..+..+++.+.
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888889999999999999998888 88777777666554433 3555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 028108 82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK 122 (213)
Q Consensus 82 s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~ 122 (213)
+-...-.+=..++.....+|..+.--.....|..|++=-++
T Consensus 134 ~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k 174 (222)
T PRK10698 134 ARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 55555555555566666666665554455666666653333
No 18
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.88 Score=38.63 Aligned_cols=116 Identities=11% Similarity=0.253 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH-HHh
Q 028108 45 SAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEM-TKA 123 (213)
Q Consensus 45 ~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~-~~~ 123 (213)
-.|-|.+.+...|-+ +...+.+++.+-+.-+-+.+|.-++++|....+-|.--. +.+|..-...-+..+ ++-
T Consensus 67 RtR~~i~kf~~~kaq---iqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~ 139 (224)
T KOG3230|consen 67 RTRRYIKKFQNMKAQ---IQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKE 139 (224)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHH
Confidence 456777777766544 556677888888887778888888888887765554322 344433333333333 346
Q ss_pred hhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCch
Q 028108 124 GIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPE 168 (213)
Q Consensus 124 ~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~ 168 (213)
+|+.+-|+|+|++.-++++-|+-+...++.|==.++-+++ .+|+
T Consensus 140 Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~-~~P~ 183 (224)
T KOG3230|consen 140 EMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLS-SLPS 183 (224)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhc-cCcc
Confidence 7788999999987777777778888888887666765544 4554
No 19
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=2.6 Score=34.97 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHH
Q 028108 73 ISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVD 152 (213)
Q Consensus 73 V~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~ 152 (213)
..+++.-+-+|.....+|+...+.|.-=--.-+...+++. ++..++ .-+|++..++|.||..-|.++.+.-+...++
T Consensus 91 M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~a--nmKMem-TeEMiNDTLDdild~sgDeeEs~aiVNqVLD 167 (208)
T KOG3231|consen 91 MNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKA--NMKMEM-TEEMINDTLDDILDGSGDEEESQAIVNQVLD 167 (208)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHH--HHHhhh-HHHHHHhhHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3444444444444444555444445433333334444432 233333 2367889999999988888888888899999
Q ss_pred HHHHHHcchhhhcCch
Q 028108 153 KVLSEIAGETAAQLPE 168 (213)
Q Consensus 153 kVldE~g~~~~~~lp~ 168 (213)
.|=-|+...+. +.|+
T Consensus 168 EIGIEisgKma-~~P~ 182 (208)
T KOG3231|consen 168 EIGIEISGKMA-KAPS 182 (208)
T ss_pred Hhhhhhcchhc-cCCc
Confidence 99999987654 5553
No 20
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=3.7 Score=34.34 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHh
Q 028108 52 EILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVN 131 (213)
Q Consensus 52 elvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~ 131 (213)
+.++.=+-..|+-...++++.-...-+-..+|..+..+|.++ |+.||=..=-.=+-++=.+|+-=--..++.+.+|.
T Consensus 64 e~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~MDkFE~qFedldvqt~~me~~m~ 140 (203)
T KOG3232|consen 64 EAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMS 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhcc
Confidence 334444445566666666665554444555666777777666 55555332222223444455555555666667776
Q ss_pred hhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcC-chhhhh
Q 028108 132 DTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQL-PEAVRK 172 (213)
Q Consensus 132 d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~l-p~~p~~ 172 (213)
++-.-.+..++.+.-....-+.-=-|+..++.... |..|.+
T Consensus 141 ~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~ 182 (203)
T KOG3232|consen 141 GSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVK 182 (203)
T ss_pred CcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCC
Confidence 65544444444444444444444445554444444 455554
No 21
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.57 E-value=4.1 Score=34.64 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=59.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 028108 14 LLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAV-----------NRLYENKAQLNSISMHLGESVA 82 (213)
Q Consensus 14 r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~-----------~~l~~~ka~L~sV~~~lqt~~s 82 (213)
+.++|++..++..-.+...+.+.|+++|+-+-||-.+..-.....+. ...-.++.+|..+..++..+.+
T Consensus 55 k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 55 KELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888999999999999887764432222222222 1122333444444444555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 028108 83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK 122 (213)
Q Consensus 83 ~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~ 122 (213)
....-.+=..++.....+|..+.--.+...+..|++=-++
T Consensus 135 k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 135 RQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4443222233444455555554433344555555554433
No 22
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=93.36 E-value=1.9 Score=35.28 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=85.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028108 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR----TVGHLSKSTE 95 (213)
Q Consensus 20 i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~----~~~sm~~s~~ 95 (213)
-++-...-++...+|-..++.|+.+.||+-+.++|+-.+...=|--+-.-.+-+..++........ +-.++.+.
T Consensus 15 ~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~si-- 92 (165)
T PF03398_consen 15 QNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSI-- 92 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHH--
Confidence 344455677888999999999999999999999999999999888888888888888776655432 33344433
Q ss_pred HHHHHHhhCChHHHHHH----HHHHHHHHHHhhhH--HHHHhhhhhhccCCCC-hhHHHHHHHHHHHHHHcch
Q 028108 96 VMKLVNNLMKAPEVAVT----MQEFSKEMTKAGII--EEMVNDTIDTALDSDD-IEEETEEKVDKVLSEIAGE 161 (213)
Q Consensus 96 ~M~~~n~~m~l~~l~~~----M~~f~ke~~~~~~~--~emm~d~~d~~~~~~~-~eee~d~~v~kVldE~g~~ 161 (213)
+=...+.-++|++..+ +..|.++|...-+- ...+++-+-.-+.... .++.++..+..|+.|+|++
T Consensus 93 -iyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~ 164 (165)
T PF03398_consen 93 -IYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP 164 (165)
T ss_dssp -HHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred -HHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 6666666788888654 44455555432111 2222222211121111 2345566666666666653
No 23
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.14 E-value=4.7 Score=33.98 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHH
Q 028108 12 LLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYE 65 (213)
Q Consensus 12 ~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~ 65 (213)
..+.+.+++..+++.-.+...+.+.|+++|+-+.||-++........++..|-.
T Consensus 52 ~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888889999999999999999999888877777666655543
No 24
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=87.24 E-value=17 Score=30.71 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 028108 16 LLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKA--VNRLYE-------NKAQLNSISMHLGESVAIART 86 (213)
Q Consensus 16 l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~--~~~l~~-------~ka~L~sV~~~lqt~~s~~~~ 86 (213)
..+-|.+|......|....+..=++ ++.....|+.+++..+- +.++++ ...++.+-...|.++..+..-
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~k--Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKK--IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888877777776665443 33344556766655442 333333 233344444445555555554
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028108 87 VGHLSKSTEVMKLVNNL 103 (213)
Q Consensus 87 ~~sm~~s~~~M~~~n~~ 103 (213)
...=..+..+|+..|+.
T Consensus 103 a~~~~ev~~aLk~g~~a 119 (191)
T PTZ00446 103 MHLHKIAVNALSYAANT 119 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555666666655
No 25
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.96 E-value=14 Score=27.45 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
.++...|+-+...|+.+|..-+..-.-...+...+..+..++..++.. +.++-+.+.+.
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~---------------------vl~~hl~~cv~ 66 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE---------------------VLEEHLKECVK 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 567888999999999999988888777777777777776556555543 56777777775
Q ss_pred hccCCCChhHHHHHHHH
Q 028108 136 TALDSDDIEEETEEKVD 152 (213)
Q Consensus 136 ~~~~~~~~eee~d~~v~ 152 (213)
....+.+.++..+++++
T Consensus 67 ~a~~~~~~~~~i~el~~ 83 (89)
T COG1937 67 RAVEDGDEEESIDELIK 83 (89)
T ss_pred HHhhccchHhHHHHHHH
Confidence 54443333444444443
No 26
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=82.47 E-value=30 Score=29.45 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=70.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHH
Q 028108 2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSR-KAVNRLYENKAQ-----LNSISM 75 (213)
Q Consensus 2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~R-k~~~~l~~~ka~-----L~sV~~ 75 (213)
+|+|+ ..|-.-||.|..|.++.-++.+=.|+..+ ..+.=|.+|++|||-. |-..+|+-=+-+ |+.+.-
T Consensus 4 lfsK~----~~Itd~DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~ 77 (209)
T KOG2910|consen 4 LFSKK----SRITDQDRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDN 77 (209)
T ss_pred cccCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56662 33456688888888888888777776654 3566789999999863 333333222222 333333
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 76 H---LGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 76 ~---lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
+ |..+.+....+.-=+.+...++.-|.. +.+++..|. .+=.+.+|+|+=+
T Consensus 78 qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~--------ideV~rimddt~e 130 (209)
T KOG2910|consen 78 QLINLEQMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFD--------IDEVDRIMDDTQE 130 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC--------HHHHHHHHHhHHH
Confidence 3 445555555666666677777777776 555554332 1225556666544
No 27
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.42 E-value=63 Score=27.88 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNR-----------LYENKAQLNSISMHLG- 78 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~-----------l~~~ka~L~sV~~~lq- 78 (213)
...+.|+|++.++...-.++..+-+.|+.+|+.+-||-.+...-..-+.... .-.++.++..+..++.
T Consensus 52 a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 52 ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999976666444333332222221 1223333333443333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 028108 79 --ESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK 122 (213)
Q Consensus 79 --t~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~ 122 (213)
+...+.....+..+++.-|..+...++. ...|..|++--++
T Consensus 132 ~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~k 174 (225)
T COG1842 132 LRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEK 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHH
Confidence 3334444445555555555555555554 6677777765555
No 28
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=70.18 E-value=39 Score=24.50 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
.++...||.+...|+.+|..=+..=.....+...+..+-.++..++.. +.++.+...|.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456678899999999999987777777777777777776666666654 56677777776
Q ss_pred hccCC
Q 028108 136 TALDS 140 (213)
Q Consensus 136 ~~~~~ 140 (213)
....+
T Consensus 63 ~~~~~ 67 (85)
T PF02583_consen 63 EAIQD 67 (85)
T ss_dssp CHCCT
T ss_pred hHhcC
Confidence 55544
No 29
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=65.80 E-value=52 Score=24.37 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNN 102 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~ 102 (213)
.++...||-+...|+.+|..-+..-.....+...+..+-.++..++.
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~ 54 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMR 54 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999998777666666666666655444444443
No 30
>PRK11352 regulator protein FrmR; Provisional
Probab=65.65 E-value=53 Score=24.33 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNN 102 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~ 102 (213)
.++-..||.+...|+.+|..-+..-.....+...+..+..++..+..
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~ 54 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMA 54 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999998888777777776666666555555443
No 31
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.77 E-value=92 Score=26.79 Aligned_cols=146 Identities=12% Similarity=0.129 Sum_probs=88.1
Q ss_pred chhhh-----hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 028108 2 IFYAK-----KIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAK----EILMSRKAVNRLYENKAQLNS 72 (213)
Q Consensus 2 ~~~~~-----~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAk----elvr~Rk~~~~l~~~ka~L~s 72 (213)
+||+. -++.+.|-.|.--..=|.+.+.=|..+|-.-.+. .||.|+. -.+..=+-+.+|-.-=+|+++
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG 82 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDG 82 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56654 2445567777666667777777777777766543 2555543 345555666777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH--HHHHH----HHHhhhHHHHHhhhhhhccCC--CChh
Q 028108 73 ISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQ--EFSKE----MTKAGIIEEMVNDTIDTALDS--DDIE 144 (213)
Q Consensus 73 V~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~--~f~ke----~~~~~~~~emm~d~~d~~~~~--~~~e 144 (213)
+.+.|.-+..+-.-+++-..+..+|+..-+. +..+++.|+ +...= .+..++. +-|+|+|+.-++. +-+|
T Consensus 83 ~l~tie~Qr~alEnA~~n~Evl~~m~~~A~A--mK~~h~~mDiDkVdd~MdeI~eQqe~a-~eIseAiS~Pvg~~a~~DE 159 (221)
T KOG1656|consen 83 TLSTIEFQREALENANTNTEVLDAMGSAAKA--MKAAHKNMDIDKVDDLMDEIAEQQEVA-EEISEAISAPVGFGADFDE 159 (221)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHH--HHHHHhccChhHHHHHHHHHHHHHHHH-HHHHHHHhCccccccccCH
Confidence 9999988888777777777787788888777 445544432 11111 1222222 3356677766642 2233
Q ss_pred HHHHHHHHHH
Q 028108 145 EETEEKVDKV 154 (213)
Q Consensus 145 ee~d~~v~kV 154 (213)
+|-..+++..
T Consensus 160 DEL~~ELdeL 169 (221)
T KOG1656|consen 160 DELMAELDEL 169 (221)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 32
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=53.94 E-value=34 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAK 51 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAk 51 (213)
.+++.++-++..|++++..|+.+|+...+..+...+-.+++
T Consensus 72 ~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~~~ 112 (120)
T PF04521_consen 72 AQLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVYVP 112 (120)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Confidence 47899999999999999999999999888777665555544
No 33
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=48.16 E-value=1.4e+02 Score=23.78 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=21.5
Q ss_pred HHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcch
Q 028108 118 KEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGE 161 (213)
Q Consensus 118 ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~ 161 (213)
++.....++++++=-.++ ++|....|..++.++|..
T Consensus 75 ~e~~Ei~iL~~yLP~~ls--------eeEi~~~v~~~i~e~ga~ 110 (143)
T PF09424_consen 75 KEQAEIEILEEYLPKQLS--------EEEIEAIVEEAIAELGAS 110 (143)
T ss_dssp HHHHHHHHHGGGS-------------HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhCcCCCC--------HHHHHHHHHHHHHHhCCC
Confidence 344455666666554332 578999999999999865
No 34
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.10 E-value=1.2e+02 Score=22.25 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCChhhHHHHHHHHHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAK--RNDMGSAKALAKEILMSRKA 59 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaak--kg~~~~arilAkelvr~Rk~ 59 (213)
+..+|+|.+---|..|+.+.+-+-.+||.--+ +|+-=.+|++ +.+||.||.
T Consensus 11 va~~QLrafIerIERlEeEk~~i~~dikdvy~eakg~GFDvKa~-r~iirlrK~ 63 (85)
T COG3750 11 VAAGQLRAFIERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAV-RTIIRLRKL 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHHHhh
Confidence 45689999988889999888888888885433 4443233333 567888875
No 35
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=41.20 E-value=47 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHH
Q 028108 32 KSIKESAKRNDMGSAKALAKEILMSRKAVNR 62 (213)
Q Consensus 32 ~~IKkaakkg~~~~arilAkelvr~Rk~~~~ 62 (213)
-++.+.|..|+.+.|+.-|+.+..+|+..-+
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999997644
No 36
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.03 E-value=3.3e+02 Score=25.52 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKESAKRN-DMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg-~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt 79 (213)
.+.|++..++..|..+.+++-++|++..+.+ +.+..+. +.+.-..++-.+..++..+..++..
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777788888888888888866665 3332222 2333344455556666666665544
No 37
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=37.03 E-value=85 Score=23.56 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 31 QKSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 31 ~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
...++.++..|+.+.|+..++.+-.+|+..=+.+
T Consensus 69 id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 69 IDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 3456788999999999999999999999876654
No 38
>PRK09720 cybC cytochrome b562; Provisional
Probab=36.15 E-value=75 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 35 KESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 35 Kkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
...+..|..+.|+..|++|..+|+..-+-|
T Consensus 70 ~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 70 LKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999876544
No 39
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=32.63 E-value=81 Score=20.87 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=19.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 028108 2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKE 36 (213)
Q Consensus 2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKk 36 (213)
+||-+|++ +..|.+-+-+++..+.-+..+.++++
T Consensus 16 lfGp~kLP-~~~r~lG~~ir~fk~~~~~~~~~~~~ 49 (53)
T PF02416_consen 16 LFGPKKLP-ELARSLGKAIREFKKAINEAKEEIEK 49 (53)
T ss_dssp HS-TTTHH-HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HhCchHHH-HHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 68888876 56666666666666655555555443
No 40
>PF13655 RVT_N: N-terminal domain of reverse transcriptase
Probab=31.96 E-value=1.7e+02 Score=21.24 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 028108 22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMS 56 (213)
Q Consensus 22 ~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~ 56 (213)
++++.=.+|+..|-+|.+.||...++-|-+-|++.
T Consensus 8 k~~~~V~rLQ~RI~kA~~~g~~~~v~~LQklL~~S 42 (84)
T PF13655_consen 8 KVERKVFRLQKRIYKASQEGDWKKVRKLQKLLLRS 42 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45566678889999999999999999999999887
No 41
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.09 E-value=1.7e+02 Score=19.84 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAK 51 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAk 51 (213)
-.+.++..+++++.++..+-.+++.+|+.. ++|.+...-+|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l--~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL--KNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 345667777777777777777777777665 246666666665
No 42
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.28 E-value=5.1e+02 Score=25.03 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 028108 7 KIHTGLLLLLLCCVLDIQREEKNVQKSIKESAK 39 (213)
Q Consensus 7 ~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaak 39 (213)
++...++|++.+++..+.++-+.++.+-...-+
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888877777777777665544
No 43
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.36 E-value=2.3e+02 Score=20.78 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKESAKRN-DMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg-~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt 79 (213)
.+.|.+..++..+..+.+.+-.+|.++.+.| +.+..+-- .+.-...+-.+..++..+..++..
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e------~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAE------VKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888889999999999988 33333222 233334455555666666665554
No 44
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.32 E-value=5e+02 Score=24.29 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 12 LLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79 (213)
Q Consensus 12 ~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt 79 (213)
..|++..++..|..+.+++-++|++..+.++.. +. .-+.+.+.-..++..+..++..+..++..
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~-~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGKAKGQKKDK-IE---EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777888888887765555310 11 11123444445566666666666666554
No 45
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.12 E-value=3.7e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKR 40 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakk 40 (213)
...+...|..|+.+-..+..++...-.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555555544433
No 46
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.09 E-value=5.6e+02 Score=24.48 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDM---GSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGH 89 (213)
Q Consensus 13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~---~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~s 89 (213)
+-.|-+-..+|.++-..|.++|++.-++=.. +.-|-+|....|.|+-..+-+ .++.+-..+|.+..+...-+.+
T Consensus 235 V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~---er~~~~l~~l~~vl~~Id~s~~ 311 (439)
T KOG2911|consen 235 VADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDL---ERKVSSLNNLETVLSQIDNSQT 311 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 3345555666666666677777666554441 234566777777776655543 3445555566666666665555
Q ss_pred HHHHHHHHHHHHhh
Q 028108 90 LSKSTEVMKLVNNL 103 (213)
Q Consensus 90 m~~s~~~M~~~n~~ 103 (213)
=+-+-.+|+.-+..
T Consensus 312 nkvvl~AyksGs~a 325 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEA 325 (439)
T ss_pred cHHHHHHHHHhHHH
Confidence 55555556555544
No 47
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.84 E-value=1.4e+02 Score=22.98 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh
Q 028108 6 KKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMG 44 (213)
Q Consensus 6 ~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~ 44 (213)
..+....+..|+++...++..=+.+...|+.+...|...
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455667777788888888877788888888888877654
No 48
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=26.20 E-value=1.4e+02 Score=22.19 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=29.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q 028108 2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRND 42 (213)
Q Consensus 2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~ 42 (213)
+||.+|++ +..|.+-|-++.+.+.-...+.++...+++-.
T Consensus 21 vfGP~KLP-~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~ 60 (90)
T PRK14857 21 VFGPKKLP-EIGRSLGKTLKGFQEASKEFENEIKREMAEPE 60 (90)
T ss_pred HcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78989887 46777888777777766667777777666433
No 49
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=24.99 E-value=63 Score=24.19 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=28.7
Q ss_pred CchhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 028108 1 MIFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKR 40 (213)
Q Consensus 1 ~~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakk 40 (213)
+|||.||++ +..|.|-+.++...+.-+..+.++++...+
T Consensus 18 llFGpkKLP-el~r~lGk~ir~fK~a~~~~~~e~~~~~~~ 56 (92)
T PRK00575 18 LLFGAKKLP-DAARSLGKSLRIFKSEVKEMQSDNKAEASA 56 (92)
T ss_pred HhccchHHH-HHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 479999987 477888888888877776676666655544
No 50
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.14 E-value=4.9e+02 Score=22.80 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH-hhhHHHHHhhhhhhccCCCCh
Q 028108 74 SMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK-AGIIEEMVNDTIDTALDSDDI 143 (213)
Q Consensus 74 ~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~-~~~~~emm~d~~d~~~~~~~~ 143 (213)
...++...+.+...+++.-....=..+.....+..+ +++..++.. ...++++|+..|.......++
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~----~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~ 197 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV----RHLSSQLQETLELIEEQLDSDLSKVCQDFDP 197 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 355666666777777766554444444443334333 445555544 677888888888766555554
No 51
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.61 E-value=3.9e+02 Score=21.52 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCh-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDM-GSA-KALAKEILMSRKAVNRLYENKAQLNSISMHLGES 80 (213)
Q Consensus 8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~-~~a-rilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~ 80 (213)
+...-...|..++..|..+-..+...|+.|...||. +.| ...||+ ++-...++|.-+..+|.++
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~---------~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRAD---------ELARLDDRINELDRRLRTG 73 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHH---------HHHHHHHHHHHHHHHHHhC
Confidence 566677899999999988777788999999999985 333 444443 2333455666666655544
No 52
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=23.09 E-value=7e+02 Score=24.21 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCh-------------hhHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHH
Q 028108 15 LLLCCVLDIQREEKNVQKSIKESAKRNDM-------------GSAKALAKEI--LMS----RKAVNRLYENKAQLNSISM 75 (213)
Q Consensus 15 ~l~R~i~~l~~eEkkl~~~IKkaakkg~~-------------~~arilAkel--vr~----Rk~~~~l~~~ka~L~sV~~ 75 (213)
.|...|.+|.++-.+++.+|...+.+... .-.+.+++++ +.. .....++....+.+..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~ 90 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKR 90 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777665542 2233444444 211 1123344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 028108 76 HLGESVAIARTVGHLSKSTEVMKLVNNLMKA 106 (213)
Q Consensus 76 ~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l 106 (213)
++........+...+......+..++..++-
T Consensus 91 eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~ 121 (593)
T PF06248_consen 91 ELEENEQLLEVLEQLQEIDELLEEVEEALKE 121 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5665555666666666666666655544433
No 53
>PRK15058 cytochrome b562; Provisional
Probab=22.44 E-value=1.8e+02 Score=23.03 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 34 IKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 34 IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
....+..|+.+.||.-++++..+|++.-+-|
T Consensus 97 a~~la~~GkL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 97 ALKLANEGKVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999875543
No 54
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.38 E-value=5e+02 Score=22.24 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 9 HTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 9 ~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
++.+...++..++.++.++.++..-++ +.++++..--+-++|-+.|-++..+.
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~---ka~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLE---KAKTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888777766 44577666666666666666655543
No 55
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.24 E-value=5.9e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028108 10 TGLLLLLLCCVLDIQREEKNVQKSIK 35 (213)
Q Consensus 10 ~~~~r~l~R~i~~l~~eEkkl~~~IK 35 (213)
+..|....+.|.+++++-..++..|+
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677766666666664
No 56
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=21.68 E-value=1.8e+02 Score=19.91 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=22.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028108 2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIK 35 (213)
Q Consensus 2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IK 35 (213)
+||.+|++. ..|.+-+.+++..+.-+..+.++.
T Consensus 20 vfGp~kLP~-l~r~~G~~~~~fk~~~~~~~~~~~ 52 (61)
T PRK14861 20 IFGPKKLPE-LGKALGKTLREFKKATKELTDDDF 52 (61)
T ss_pred hcCchHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789898875 677777777776665555555544
No 57
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.56 E-value=3.2e+02 Score=19.37 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 10 TGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKA--LAKEILMSRKAVNRLYENKAQLNSISMHLGE 79 (213)
Q Consensus 10 ~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~ari--lAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt 79 (213)
.-.+..++-.+..+..-...+...|.....+= ....- ...+.+..=++..|+..++.+|..+..+++.
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L--~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~ 82 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKL--KELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQK 82 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888887777777776655321 11111 1111221222555566666666666555543
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.19 E-value=7.9e+02 Score=24.30 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 16 LLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV 87 (213)
Q Consensus 16 l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~ 87 (213)
|.+-..|++++.++=+.+.|.-+.+ =|-.-.++.+.|-.+....+.+ +|++++.++.....|..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLER-----ERKAKEEAAKQREAIEAAQRSR-RLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555566666655554444433322 2222234455566666665555 8888888887666555543
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.03 E-value=7e+02 Score=23.03 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=23.7
Q ss_pred hCChHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 028108 103 LMKAPEVAVTMQEFSKEMTKAGIIEEMVNDT 133 (213)
Q Consensus 103 ~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~ 133 (213)
.-.+-+|...+..+..|.-.|++.-.+++-+
T Consensus 327 ~sPlv~IKqAl~kLk~EI~qMdvrIGVleh~ 357 (359)
T PF10498_consen 327 GSPLVKIKQALTKLKQEIKQMDVRIGVLEHT 357 (359)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 3445678888899999999888887776654
Done!